AlfalfaGEDB | MS.gene79195

M. sativa cultivar XinJiangDaYe / MS.gene79195

KEGG: K11254
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF15511.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79195.t1	KCW52694.1	100	103	0	0	1	103	4	106	7.50E-48	199.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79195.t1	P62785	100.0	103	0	0	1	103	1	103	1.8e-50	199.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79195.t1	M5VRN0	100.0	103	0	0	1	103	1	103	5.4e-48	199.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene79195	0.82845	8.93E-55	-1.69E-46
MS.gene049159	MS.gene79195	0.854536	1.15E-61	-1.69E-46
MS.gene049255	MS.gene79195	0.802656	5.06E-49	-1.69E-46
MS.gene049404	MS.gene79195	0.803918	2.77E-49	-1.69E-46
MS.gene049501	MS.gene79195	0.800002	1.77E-48	-1.69E-46
MS.gene049821	MS.gene79195	0.882595	9.13E-71	-1.69E-46
MS.gene049850	MS.gene79195	0.8024	5.71E-49	-1.69E-46
MS.gene050020	MS.gene79195	0.828743	7.59E-55	-1.69E-46
MS.gene050807	MS.gene79195	0.824723	6.92E-54	-1.69E-46
MS.gene050808	MS.gene79195	0.808302	3.31E-50	-1.69E-46
MS.gene050815	MS.gene79195	0.819469	1.14E-52	-1.69E-46
MS.gene050901	MS.gene79195	0.841235	5.37E-58	-1.69E-46
MS.gene051198	MS.gene79195	0.811775	5.91E-51	-1.69E-46
MS.gene051247	MS.gene79195	0.853429	2.40E-61	-1.69E-46
MS.gene051328	MS.gene79195	0.843547	1.31E-58	-1.69E-46
MS.gene05134	MS.gene79195	0.818638	1.77E-52	-1.69E-46
MS.gene05157	MS.gene79195	0.825304	5.04E-54	-1.69E-46
MS.gene051594	MS.gene79195	0.814451	1.53E-51	-1.69E-46
MS.gene051700	MS.gene79195	0.812313	4.51E-51	-1.69E-46
MS.gene051719	MS.gene79195	0.846642	1.91E-59	-1.69E-46
MS.gene051720	MS.gene79195	0.85017	2.02E-60	-1.69E-46
MS.gene051744	MS.gene79195	0.805016	1.64E-49	-1.69E-46
MS.gene052012	MS.gene79195	0.800589	1.34E-48	-1.69E-46
MS.gene052020	MS.gene79195	0.805579	1.25E-49	-1.69E-46
MS.gene052133	MS.gene79195	0.803274	3.77E-49	-1.69E-46
MS.gene052516	MS.gene79195	0.825248	5.20E-54	-1.69E-46
MS.gene052519	MS.gene79195	0.816851	4.47E-52	-1.69E-46
MS.gene052665	MS.gene79195	0.819203	1.31E-52	-1.69E-46
MS.gene052773	MS.gene79195	0.809181	2.15E-50	-1.69E-46
MS.gene052863	MS.gene79195	0.80431	2.30E-49	-1.69E-46
MS.gene052947	MS.gene79195	0.804355	2.25E-49	-1.69E-46
MS.gene053008	MS.gene79195	0.823352	1.45E-53	-1.69E-46
MS.gene053122	MS.gene79195	0.812706	3.71E-51	-1.69E-46
MS.gene053226	MS.gene79195	0.847102	1.43E-59	-1.69E-46
MS.gene053581	MS.gene79195	0.82371	1.20E-53	-1.69E-46
MS.gene05364	MS.gene79195	0.80025	1.57E-48	-1.69E-46
MS.gene053883	MS.gene79195	0.812055	5.14E-51	-1.69E-46
MS.gene054236	MS.gene79195	0.820734	5.87E-53	-1.69E-46
MS.gene054651	MS.gene79195	0.818169	2.26E-52	-1.69E-46
MS.gene054775	MS.gene79195	0.831064	2.06E-55	-1.69E-46
MS.gene055465	MS.gene79195	0.855968	4.42E-62	-1.69E-46
MS.gene055466	MS.gene79195	0.873041	2.00E-67	-1.69E-46
MS.gene055468	MS.gene79195	0.865474	5.75E-65	-1.69E-46
MS.gene055469	MS.gene79195	0.809101	2.24E-50	-1.69E-46
MS.gene055513	MS.gene79195	0.821801	3.33E-53	-1.69E-46
MS.gene055580	MS.gene79195	-0.828973	6.68E-55	-1.69E-46
MS.gene055608	MS.gene79195	0.820309	7.34E-53	-1.69E-46
MS.gene055778	MS.gene79195	0.831586	1.53E-55	-1.69E-46
MS.gene055818	MS.gene79195	0.819394	1.19E-52	-1.69E-46
MS.gene056043	MS.gene79195	-0.813311	2.73E-51	-1.69E-46
MS.gene056174	MS.gene79195	0.837976	3.78E-57	-1.69E-46
MS.gene056215	MS.gene79195	0.853414	2.43E-61	-1.69E-46
MS.gene056308	MS.gene79195	0.825932	3.58E-54	-1.69E-46
MS.gene056498	MS.gene79195	0.80903	2.31E-50	-1.69E-46
MS.gene056553	MS.gene79195	0.800292	1.54E-48	-1.69E-46
MS.gene056595	MS.gene79195	0.817821	2.70E-52	-1.69E-46
MS.gene057294	MS.gene79195	0.803706	3.07E-49	-1.69E-46
MS.gene057444	MS.gene79195	0.828763	7.50E-55	-1.69E-46
MS.gene057693	MS.gene79195	0.853446	2.38E-61	-1.69E-46
MS.gene057694	MS.gene79195	0.816612	5.06E-52	-1.69E-46
MS.gene057705	MS.gene79195	0.800669	1.29E-48	-1.69E-46
MS.gene058084	MS.gene79195	0.806725	7.16E-50	-1.69E-46
MS.gene058339	MS.gene79195	0.806181	9.32E-50	-1.69E-46
MS.gene05847	MS.gene79195	0.809441	1.89E-50	-1.69E-46
MS.gene058625	MS.gene79195	0.813464	2.53E-51	-1.69E-46
MS.gene059084	MS.gene79195	0.814037	1.89E-51	-1.69E-46
MS.gene059625	MS.gene79195	0.829303	5.55E-55	-1.69E-46
MS.gene059842	MS.gene79195	0.841526	4.50E-58	-1.69E-46
MS.gene059937	MS.gene79195	0.818688	1.72E-52	-1.69E-46
MS.gene060310	MS.gene79195	0.821236	4.50E-53	-1.69E-46
MS.gene060429	MS.gene79195	0.853171	2.85E-61	-1.69E-46
MS.gene060587	MS.gene79195	0.825502	4.53E-54	-1.69E-46
MS.gene060803	MS.gene79195	0.822409	2.41E-53	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene79195	MS.gene012390	PPI
MS.gene056215	MS.gene79195	PPI
MS.gene022946	MS.gene79195	PPI
MS.gene79195	MS.gene04434	PPI
MS.gene79195	MS.gene070907	PPI
MS.gene79195	MS.gene04392	PPI
MS.gene061876	MS.gene79195	PPI
MS.gene79195	MS.gene010219	PPI
MS.gene012391	MS.gene79195	PPI
MS.gene09871	MS.gene79195	PPI
MS.gene035897	MS.gene79195	PPI
MS.gene79195	MS.gene68545	PPI
MS.gene060463	MS.gene79195	PPI
MS.gene79195	MS.gene016624	PPI
MS.gene79195	MS.gene048746	PPI
MS.gene04392	MS.gene79195	PPI
MS.gene04068	MS.gene79195	PPI
MS.gene04434	MS.gene79195	PPI
MS.gene79195	MS.gene035897	PPI
MS.gene79195	MS.gene049705	PPI
MS.gene08121	MS.gene79195	PPI
MS.gene022932	MS.gene79195	PPI
MS.gene88681	MS.gene79195	PPI
MS.gene79195	MS.gene05608	PPI
MS.gene070244	MS.gene79195	PPI
MS.gene035896	MS.gene79195	PPI
MS.gene64920	MS.gene79195	PPI
MS.gene009027	MS.gene79195	PPI
MS.gene79195	MS.gene82546	PPI
MS.gene31196	MS.gene79195	PPI
MS.gene79195	MS.gene60093	PPI
MS.gene79195	MS.gene08122	PPI
MS.gene060465	MS.gene79195	PPI
MS.gene79195	MS.gene09873	PPI
MS.gene05623	MS.gene79195	PPI
MS.gene043967	MS.gene79195	PPI
MS.gene028629	MS.gene79195	PPI
MS.gene79195	MS.gene04972	PPI
MS.gene79195	MS.gene004121	PPI
MS.gene79195	MS.gene62520	PPI
MS.gene79195	MS.gene018578	PPI
MS.gene04067	MS.gene79195	PPI
MS.gene71215	MS.gene79195	PPI
MS.gene061870	MS.gene79195	PPI
MS.gene79195	MS.gene04064	PPI
MS.gene79195	MS.gene018580	PPI
MS.gene79195	MS.gene004124	PPI
MS.gene035718	MS.gene79195	PPI
MS.gene66225	MS.gene79195	PPI
MS.gene071136	MS.gene79195	PPI
MS.gene79195	MS.gene04052	PPI
MS.gene79195	MS.gene84536	PPI
MS.gene79195	MS.gene061866	PPI
MS.gene79195	MS.gene64650	PPI
MS.gene78578	MS.gene79195	PPI
MS.gene79195	MS.gene048705	PPI
MS.gene035721	MS.gene79195	PPI
MS.gene79195	MS.gene061874	PPI
MS.gene79195	MS.gene04576	PPI
MS.gene79195	MS.gene061869	PPI
MS.gene064557	MS.gene79195	PPI
MS.gene038469	MS.gene79195	PPI
MS.gene04433	MS.gene79195	PPI
MS.gene04452	MS.gene79195	PPI
MS.gene035787	MS.gene79195	PPI
MS.gene79195	MS.gene061867	PPI
MS.gene89487	MS.gene79195	PPI
MS.gene79195	MS.gene008276	PPI
MS.gene035719	MS.gene79195	PPI
MS.gene79195	MS.gene05619	PPI
MS.gene79195	MS.gene73136	PPI
MS.gene58854	MS.gene79195	PPI
MS.gene79195	MS.gene049821	PPI
MS.gene79195	MS.gene04068	PPI
MS.gene70955	MS.gene79195	PPI
MS.gene040383	MS.gene79195	PPI
MS.gene79195	MS.gene05623	PPI
MS.gene070242	MS.gene79195	PPI
MS.gene79195	MS.gene89488	PPI
MS.gene072493	MS.gene79195	PPI
MS.gene30920	MS.gene79195	PPI
MS.gene048746	MS.gene79195	PPI
MS.gene010220	MS.gene79195	PPI
MS.gene08053	MS.gene79195	PPI
MS.gene061872	MS.gene79195	PPI
MS.gene79195	MS.gene035720	PPI
MS.gene79195	MS.gene61017	PPI
MS.gene88680	MS.gene79195	PPI
MS.gene79195	MS.gene09871	PPI
MS.gene070241	MS.gene79195	PPI

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79195.t1	MTR_7g029510	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_7g099610	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_5g063620	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_4g061827	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_4g061920	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_3g462400	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_3g054380	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_3g462730	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_3g462510	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_3g070920	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_3g061440	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_3g462410	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_2g096100	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_8g038460	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene79195.t1	MTR_4g128150	100.000	102	0	1	102	1	102	1.67e-66	204
MS.gene79195.t1	MTR_7g029520	84.000	50	8	27	76	1	50	2.15e-21	87.0

Query id	Subject id	identity %	alignment length	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79195.t1	AT5G59970	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene79195.t1	AT5G59690	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene79195.t1	AT5G59970	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene79195.t1	AT3G46320	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene79195.t1	AT3G45930	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene79195.t1	AT3G53730	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene79195.t1	AT2G28740	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene79195.t1	AT1G07660	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene79195.t1	AT1G07820	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene79195.t1	AT1G07820	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene79195.t1	AT1G07660	83.495	103	1	1	103	1	86	4.34e-51	155

Find 29 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCGCCAATCGACGAATTGC+TGG	0.286958	7.2:+68578205	None:intergenic
AGACAAGGAAGAACCCTCTA+TGG	0.419030	7.2:-68578025	MS.gene79195:CDS
GGAAAGGGAGGTAAAGGATT+AGG	0.430594	7.2:-68578289	MS.gene79195:CDS
AGGTGTGTTGAAGATCTTCT+TGG	0.431919	7.2:-68578134	MS.gene79195:CDS
GGAAGAACCCTCTATGGTTT+CGG	0.453170	7.2:-68578019	MS.gene79195:CDS
CTTCTTGGAGAATGTGATAA+GGG	0.464768	7.2:-68578119	MS.gene79195:CDS
TCTTCTTGGAGAATGTGATA+AGG	0.492723	7.2:-68578120	MS.gene79195:CDS
TTCAACCACCGAAACCATAG+AGG	0.495992	7.2:+68578011	None:intergenic
AAAATGTCTGGTCGTGGAAA+GGG	0.502849	7.2:-68578304	MS.gene79195:CDS
AAAGCCAGCAATTCGTCGAT+TGG	0.524127	7.2:-68578209	MS.gene79195:CDS
CGTCGATTGGCGAGAAGAGG+AGG	0.528177	7.2:-68578196	MS.gene79195:CDS
GAGGAAAACTGTGACTGCTA+TGG	0.528299	7.2:-68578068	MS.gene79195:CDS
GGTCGTGGAAAGGGAGGTAA+AGG	0.529255	7.2:-68578295	MS.gene79195:CDS
GTTCTCCGTGACAACATTCA+AGG	0.535706	7.2:-68578238	MS.gene79195:CDS
GGAGGTAAAGGATTAGGAAA+GGG	0.542976	7.2:-68578283	MS.gene79195:CDS
GGGAGGTAAAGGATTAGGAA+AGG	0.547562	7.2:-68578284	MS.gene79195:CDS
ATTCGTCGATTGGCGAGAAG+AGG	0.562203	7.2:-68578199	MS.gene79195:CDS
AATCAGCGGTTTGATCTATG+AGG	0.565644	7.2:-68578164	MS.gene79195:CDS
GGTAAAGGATTAGGAAAGGG+AGG	0.605777	7.2:-68578280	MS.gene79195:CDS
TGATTCCTTGAATGTTGTCA+CGG	0.606759	7.2:+68578233	None:intergenic
AGAACCCTCTATGGTTTCGG+TGG	0.621954	7.2:-68578016	MS.gene79195:CDS
TTACTTACACTGAGCATGCG+AGG	0.631466	7.2:-68578090	MS.gene79195:CDS
GTTTATGCTCTTAAGAGACA+AGG	0.637955	7.2:-68578040	MS.gene79195:CDS
ATGTCTGGTCGTGGAAAGGG+AGG	0.640958	7.2:-68578301	MS.gene79195:CDS
TTGATCTATGAGGAAACAAG+AGG	0.655856	7.2:-68578154	MS.gene79195:CDS
AGGTGCAAAGAGACATCGCA+AGG	0.665418	7.2:-68578260	MS.gene79195:CDS
TCAACCACCGAAACCATAGA+GGG	0.678652	7.2:+68578012	None:intergenic
GGAGGTGTGAAAAGAATCAG+CGG	0.710972	7.2:-68578178	MS.gene79195:CDS
CTTACACTGAGCATGCGAGG+AGG	0.750750	7.2:-68578087	MS.gene79195:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	CTTCTTGGAGAATGTGATAA+GGG	-	chr7.2:68578194-68578213	MS.gene79195:CDS	35.0%
	GTTTATGCTCTTAAGAGACA+AGG	-	chr7.2:68578273-68578292	MS.gene79195:CDS	35.0%
	TCTTCTTGGAGAATGTGATA+AGG	-	chr7.2:68578193-68578212	MS.gene79195:CDS	35.0%
	TGATTCCTTGAATGTTGTCA+CGG	+	chr7.2:68578083-68578102	None:intergenic	35.0%
	TTGATCTATGAGGAAACAAG+AGG	-	chr7.2:68578159-68578178	MS.gene79195:CDS	35.0%
	AATCAGCGGTTTGATCTATG+AGG	-	chr7.2:68578149-68578168	MS.gene79195:CDS	40.0%
	AGGTGTGTTGAAGATCTTCT+TGG	-	chr7.2:68578179-68578198	MS.gene79195:CDS	40.0%
	GGAGGTAAAGGATTAGGAAA+GGG	-	chr7.2:68578030-68578049	MS.gene79195:CDS	40.0%
	AAAGCCAGCAATTCGTCGAT+TGG	-	chr7.2:68578104-68578123	MS.gene79195:CDS	45.0%
	AGACAAGGAAGAACCCTCTA+TGG	-	chr7.2:68578288-68578307	MS.gene79195:CDS	45.0%
	GAGGAAAACTGTGACTGCTA+TGG	-	chr7.2:68578245-68578264	MS.gene79195:CDS	45.0%
	GGAAAGGGAGGTAAAGGATT+AGG	-	chr7.2:68578024-68578043	MS.gene79195:CDS	45.0%
	GGAAGAACCCTCTATGGTTT+CGG	-	chr7.2:68578294-68578313	MS.gene79195:CDS	45.0%
	GGGAGGTAAAGGATTAGGAA+AGG	-	chr7.2:68578029-68578048	MS.gene79195:CDS	45.0%
	GGTAAAGGATTAGGAAAGGG+AGG	-	chr7.2:68578033-68578052	MS.gene79195:CDS	45.0%
	GTTCTCCGTGACAACATTCA+AGG	-	chr7.2:68578075-68578094	MS.gene79195:CDS	45.0%
	TCAACCACCGAAACCATAGA+GGG	+	chr7.2:68578304-68578323	None:intergenic	45.0%
	TTACTTACACTGAGCATGCG+AGG	-	chr7.2:68578223-68578242	MS.gene79195:CDS	45.0%
!	GGAGGTGTGAAAAGAATCAG+CGG	-	chr7.2:68578135-68578154	MS.gene79195:CDS	45.0%
	AGAACCCTCTATGGTTTCGG+TGG	-	chr7.2:68578297-68578316	MS.gene79195:CDS	50.0%
	AGGTGCAAAGAGACATCGCA+AGG	-	chr7.2:68578053-68578072	MS.gene79195:CDS	50.0%
!	ATTCGTCGATTGGCGAGAAG+AGG	-	chr7.2:68578114-68578133	MS.gene79195:CDS	50.0%
	ATGTCTGGTCGTGGAAAGGG+AGG	-	chr7.2:68578012-68578031	MS.gene79195:CDS	55.0%
	CTCGCCAATCGACGAATTGC+TGG	+	chr7.2:68578111-68578130	None:intergenic	55.0%
	CTTACACTGAGCATGCGAGG+AGG	-	chr7.2:68578226-68578245	MS.gene79195:CDS	55.0%
	GGTCGTGGAAAGGGAGGTAA+AGG	-	chr7.2:68578018-68578037	MS.gene79195:CDS	55.0%
!	CGTCGATTGGCGAGAAGAGG+AGG	-	chr7.2:68578117-68578136	MS.gene79195:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	68578012	68578323	68578012	ID=MS.gene79195
chr7.2	mRNA	68578012	68578323	68578012	ID=MS.gene79195.t1;Parent=MS.gene79195
chr7.2	exon	68578012	68578323	68578012	ID=MS.gene79195.t1.exon1;Parent=MS.gene79195.t1
chr7.2	CDS	68578012	68578323	68578012	ID=cds.MS.gene79195.t1;Parent=MS.gene79195.t1

Gene Sequence	>MS.gene79195 ATGTCTGGTCGTGGAAAGGGAGGTAAAGGATTAGGAAAGGGAGGTGCAAAGAGACATCGCAAGGTTCTCCGTGACAACATTCAAGGAATCACAAAGCCAGCAATTCGTCGATTGGCGAGAAGAGGAGGTGTGAAAAGAATCAGCGGTTTGATCTATGAGGAAACAAGAGGTGTGTTGAAGATCTTCTTGGAGAATGTGATAAGGGATGCTGTTACTTACACTGAGCATGCGAGGAGGAAAACTGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACCCTCTATGGTTTCGGTGGTTGA
Protein sequence	>MS.gene79195.t1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG