AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45975

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45975.t1 MTR_7g066580 82.743 226 34 1 98 318 171 396 2.24e-131 382
MS.gene45975.t1 MTR_7g066580 77.358 106 11 2 20 115 1 103 2.40e-44 157
MS.gene45975.t1 MTR_1g014060 40.563 355 124 10 23 318 9 335 5.66e-69 220
MS.gene45975.t1 MTR_2g029400 43.280 372 147 12 1 316 1 364 6.82e-69 221
MS.gene45975.t1 MTR_7g066680 56.345 197 75 4 121 316 70 256 4.40e-61 198
MS.gene45975.t1 MTR_7g066570 51.232 203 88 3 118 318 238 431 5.15e-56 191
MS.gene45975.t1 MTR_7g066570 66.387 119 30 1 1 109 1 119 4.46e-42 153
MS.gene45975.t1 MTR_7g058710 50.521 192 89 2 127 318 243 428 1.86e-54 185
MS.gene45975.t1 MTR_7g058710 63.366 101 35 1 10 110 8 106 1.40e-34 132
MS.gene45975.t1 MTR_7g012680 44.550 211 89 3 108 318 214 396 1.30e-47 166
MS.gene45975.t1 MTR_7g012680 69.565 115 25 1 1 105 1 115 3.41e-44 157
MS.gene45975.t1 MTR_7g066260 46.193 197 65 3 125 317 253 412 1.55e-44 159
MS.gene45975.t1 MTR_7g066260 67.544 114 27 1 2 105 3 116 9.54e-42 151
MS.gene45975.t1 MTR_7g066360 66.387 119 30 1 1 109 1 119 1.05e-41 151
MS.gene45975.t1 MTR_7g066360 39.720 214 77 6 108 317 234 399 4.07e-30 119
MS.gene45975.t1 MTR_1g041315 44.059 202 69 4 120 318 258 418 3.52e-40 147
MS.gene45975.t1 MTR_1g041315 60.504 119 37 1 1 109 1 119 7.18e-39 143
MS.gene45975.t1 MTR_7g066350 66.055 109 27 1 10 108 5 113 4.28e-39 144
MS.gene45975.t1 MTR_7g066350 38.158 228 92 6 98 318 215 400 3.55e-34 130
MS.gene45975.t1 MTR_7g066340 63.025 119 32 2 1 109 1 117 4.59e-39 144
MS.gene45975.t1 MTR_7g066340 44.221 199 70 4 119 317 246 403 6.89e-38 140
MS.gene45975.t1 MTR_7g066310 43.646 181 62 3 137 317 193 333 6.58e-37 137
MS.gene45975.t1 MTR_7g066310 61.468 109 32 1 11 109 4 112 1.05e-33 128
MS.gene45975.t1 MTR_7g066400 39.801 201 86 3 120 318 221 388 1.23e-36 137
MS.gene45975.t1 MTR_7g066400 49.091 110 30 2 10 109 8 101 5.32e-22 96.3
MS.gene45975.t1 MTR_7g066430 40.196 204 102 4 124 318 244 436 2.62e-36 137
MS.gene45975.t1 MTR_7g066430 55.238 105 37 1 15 109 5 109 4.03e-30 119
MS.gene45975.t1 MTR_7g066290 62.281 114 33 1 2 105 3 116 5.31e-36 135
MS.gene45975.t1 MTR_7g066290 46.988 166 71 3 108 272 238 387 4.82e-33 127
MS.gene45975.t1 MTR_7g058700 42.857 182 43 2 137 318 752 872 3.24e-34 133
MS.gene45975.t1 MTR_7g058700 68.235 85 23 1 26 110 531 611 7.28e-29 117
MS.gene45975.t1 MTR_7g066410 58.491 106 34 1 14 109 10 115 3.45e-34 131
MS.gene45975.t1 MTR_7g066410 41.146 192 93 4 136 318 283 463 2.79e-31 123
MS.gene45975.t1 MTR_7g066280 37.688 199 104 3 134 317 147 340 4.45e-32 124
MS.gene45975.t1 MTR_7g063900 59.048 105 33 1 15 109 11 115 3.16e-30 120
MS.gene45975.t1 MTR_7g063900 32.308 195 106 6 137 318 252 433 4.43e-21 94.0
MS.gene45975.t1 MTR_7g063880 56.303 119 39 2 1 109 1 116 7.05e-30 119
MS.gene45975.t1 MTR_7g063880 31.892 185 110 6 135 318 244 413 1.36e-15 77.4
MS.gene45975.t1 MTR_7g100420 30.564 337 175 12 15 319 40 349 1.78e-29 116
MS.gene45975.t1 MTR_7g063830 40.351 171 86 2 8 168 4 168 3.51e-29 116
MS.gene45975.t1 MTR_7g063830 44.340 106 58 1 137 242 254 358 3.14e-21 94.0
MS.gene45975.t1 MTR_7g066480 56.075 107 37 1 13 109 15 121 1.04e-28 115
MS.gene45975.t1 MTR_7g066480 52.564 78 36 1 138 214 264 341 5.33e-16 78.6
MS.gene45975.t1 MTR_7g062280 33.014 209 107 4 121 318 250 436 3.81e-28 114
MS.gene45975.t1 MTR_7g062280 51.754 114 43 2 6 109 4 115 4.67e-27 111
MS.gene45975.t1 MTR_7g063720 35.263 190 90 5 129 315 15 174 3.96e-28 109
MS.gene45975.t1 MTR_7g066490 54.128 109 40 1 14 112 16 124 6.06e-28 112
MS.gene45975.t1 MTR_7g066490 48.101 79 39 1 129 207 243 319 1.30e-14 74.3
MS.gene45975.t1 MTR_7g063660 54.369 103 37 1 15 107 10 112 3.43e-27 111
MS.gene45975.t1 MTR_7g063660 30.097 206 122 4 114 318 238 422 2.01e-22 97.8
MS.gene45975.t1 MTR_7g062300 50.877 114 46 1 6 109 4 117 4.61e-27 110
MS.gene45975.t1 MTR_7g062300 30.769 208 111 5 121 318 240 424 8.47e-25 104
MS.gene45975.t1 MTR_3g065200 36.313 179 93 5 140 318 215 372 2.37e-26 108
MS.gene45975.t1 MTR_3g065200 44.068 118 43 3 12 119 1 105 1.78e-19 89.0
MS.gene45975.t1 MTR_7g063840 50.781 128 47 4 1 116 1 124 3.25e-26 108
MS.gene45975.t1 MTR_7g063840 31.351 185 108 5 137 318 250 418 3.02e-20 91.3
MS.gene45975.t1 MTR_7g063890 53.774 106 39 1 14 109 27 132 6.88e-26 107
MS.gene45975.t1 MTR_7g063890 32.979 188 110 6 145 324 276 455 6.04e-16 78.6
MS.gene45975.t1 MTR_7g063920 46.043 139 61 3 1 129 1 135 1.22e-25 106
MS.gene45975.t1 MTR_7g063920 30.220 182 110 2 137 318 217 381 6.96e-21 92.8
MS.gene45975.t1 MTR_7g063820 48.780 123 50 2 8 121 4 122 1.57e-25 106
MS.gene45975.t1 MTR_7g063820 33.158 190 118 3 125 313 242 423 5.13e-24 102
MS.gene45975.t1 MTR_7g062270 50.000 106 43 1 14 109 10 115 2.82e-23 99.4
MS.gene45975.t1 MTR_3g007740 55.789 95 38 2 14 107 9 100 2.35e-22 97.4
MS.gene45975.t1 MTR_3g007740 33.684 190 83 5 137 321 244 395 6.59e-20 90.1
MS.gene45975.t1 MTR_7g063670 45.669 127 64 3 10 135 13 135 9.17e-21 92.8
MS.gene45975.t1 MTR_7g063670 32.240 183 92 4 138 320 253 403 9.87e-16 77.8
MS.gene45975.t1 MTR_4g019310 30.645 186 120 4 134 318 263 440 1.13e-20 92.8
MS.gene45975.t1 MTR_4g019310 44.144 111 44 3 17 109 11 121 6.63e-20 90.5
MS.gene45975.t1 MTR_4g017410 42.500 120 49 4 8 107 3 122 5.12e-19 87.8
MS.gene45975.t1 MTR_4g017470 38.710 124 56 3 10 113 8 131 9.09e-19 87.0
MS.gene45975.t1 MTR_4g017470 27.136 199 123 6 136 321 233 422 3.53e-11 64.3
MS.gene45975.t1 MTR_4g017610 44.954 109 42 4 17 107 16 124 3.50e-18 85.5
MS.gene45975.t1 MTR_4g017610 28.511 235 131 9 98 323 227 433 1.98e-12 68.2
MS.gene45975.t1 MTR_7g063850 32.240 183 108 5 137 318 66 233 6.42e-18 82.8
MS.gene45975.t1 MTR_4g017440 40.310 129 55 3 1 107 1 129 9.19e-18 84.3
MS.gene45975.t1 MTR_4g019340 41.593 113 45 2 15 106 39 151 1.04e-17 84.0
MS.gene45975.t1 MTR_4g019340 31.148 183 100 4 137 316 303 462 1.19e-14 74.7
MS.gene45975.t1 MTR_4g017830 40.171 117 54 3 6 106 4 120 1.32e-16 80.9
MS.gene45975.t1 MTR_4g017830 28.272 191 117 6 137 315 267 449 8.44e-12 66.2
MS.gene45975.t1 MTR_7g063690 66.667 48 16 0 15 62 13 60 3.40e-13 68.6
MS.gene45975.t1 MTR_2g067310 64.000 50 18 0 25 74 58 107 5.28e-13 68.2
MS.gene45975.t1 MTR_4g019240 33.621 116 55 3 10 106 9 121 4.27e-12 64.3
MS.gene45975.t1 MTR_1g115440 27.225 191 118 5 137 318 11 189 1.70e-11 63.5
MS.gene45975.t1 MTR_7g063870 40.659 91 42 2 17 95 34 124 5.97e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45975.t1 AT3G09110 48.544 103 43 1 17 109 12 114 1.70e-23 99.4
MS.gene45975.t1 AT3G09120 42.017 119 56 2 15 124 7 121 3.48e-22 95.1
MS.gene45975.t1 AT5G01120 41.176 119 55 2 1 109 1 114 1.21e-21 95.5
MS.gene45975.t1 AT5G43240 43.810 105 49 1 15 109 10 114 6.39e-21 93.6
MS.gene45975.t1 AT5G43240 43.810 105 49 1 15 109 10 114 6.39e-21 93.6
MS.gene45975.t1 AT5G43240 43.810 105 49 1 15 109 10 114 6.39e-21 93.6
MS.gene45975.t1 AT5G01150 46.602 103 45 1 17 109 12 114 1.28e-19 89.7
MS.gene45975.t1 AT3G09140 45.631 103 46 1 17 109 12 114 2.68e-19 89.0
MS.gene45975.t1 AT3G09140 45.631 103 46 1 17 109 12 114 3.14e-19 88.6
MS.gene45975.t1 AT5G01130 45.098 102 46 1 15 106 10 111 1.55e-17 83.2
MS.gene45975.t1 AT5G37320 40.206 97 47 2 24 109 19 115 5.77e-14 72.8
MS.gene45975.t1 AT5G01140 36.975 119 49 2 17 125 12 114 2.39e-11 64.7

Find 64 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTCAATTTCAAATTC+TGG 0.137417 7.2:-44391396 None:intergenic
CAAATTCAGATTGGTGTCTT+AGG 0.270386 7.2:-44391889 None:intergenic
AGACATTTGTCTAAATTCAT+AGG 0.310299 7.2:-44391930 None:intergenic
GGTAAGGAAGCTGCAGATAT+TGG 0.326373 7.2:-44392223 None:intergenic
TCAGAATGACAATAATAAAT+AGG 0.328273 7.2:-44392244 None:intergenic
ATGTCAAAATTATCAAGTTC+TGG 0.355949 7.2:+44392394 MS.gene45975:CDS
TATGCAACACTCCTCCTAAT+AGG 0.358205 7.2:-44392045 None:intergenic
AATGTTCAATTTCAAATTCT+GGG 0.366748 7.2:-44391395 None:intergenic
AACACAATCACTTGTATACT+TGG 0.374361 7.2:-44392326 None:intergenic
AGTTTCTTAACATTGCCTTT+AGG 0.386977 7.2:+44391238 MS.gene45975:CDS
CACCAATCTGAATTTGTGAT+TGG 0.388924 7.2:+44391896 MS.gene45975:CDS
CTCCGCCCACATTCTTCAAT+TGG 0.396856 7.2:-44392267 None:intergenic
CCATGTTCGGCTGAGAGTTA+TGG 0.399544 7.2:+44391150 MS.gene45975:CDS
CTGCAGATATTGGTAATATC+TGG 0.404394 7.2:-44392213 None:intergenic
TCAAAATGTGCGGCACATAG+AGG 0.406628 7.2:-44392181 None:intergenic
TGAAGAATGTGGGCGGAGTC+AGG 0.420799 7.2:+44392272 MS.gene45975:CDS
GCCCGAGCTCACTGTATCTC+TGG 0.428762 7.2:+44391317 MS.gene45975:CDS
TTGAACAAGTTAACCATGTT+CGG 0.430354 7.2:+44391137 MS.gene45975:CDS
TCCGTCACCATGAACATTGA+TGG 0.433900 7.2:-44392433 None:intergenic
AACATGGTTAACTTGTTCAA+TGG 0.434502 7.2:-44391134 None:intergenic
TAAAGGACCATCAATGTTCA+TGG 0.463503 7.2:+44392426 MS.gene45975:CDS
TAAACTTCCATGGAGTTCCT+TGG 0.474151 7.2:-44391370 None:intergenic
GTCCAGAGATACAGTGAGCT+CGG 0.488957 7.2:-44391319 None:intergenic
GGAGTGTTGCATATGCTTCA+AGG 0.493604 7.2:+44392055 MS.gene45975:CDS
TTTCTCACTTTCCTATTAGG+AGG 0.503851 7.2:+44392034 MS.gene45975:CDS
CTCCAATCACAAATTCAGAT+TGG 0.505283 7.2:-44391898 None:intergenic
GAGTTATGGTGGACAGAGAA+AGG 0.517359 7.2:+44391164 MS.gene45975:CDS
GACATTTGTCTAAATTCATA+GGG 0.518859 7.2:-44391929 None:intergenic
TCCAGAGATACAGTGAGCTC+GGG 0.534946 7.2:-44391318 None:intergenic
TTCTGACCAATTGAAGAATG+TGG 0.542497 7.2:+44392261 MS.gene45975:CDS
GGGTGTAGAAGTCAGAGTAC+CGG 0.544567 7.2:-44392305 None:intergenic
AAAGTTGTGTATGCTGAGGC+AGG 0.545247 7.2:+44391190 MS.gene45975:CDS
GGTGTAGAAGTCAGAGTACC+GGG 0.545472 7.2:-44392304 None:intergenic
AGATAGATATTTGATGTCAC+AGG 0.549085 7.2:+44392135 MS.gene45975:CDS
AGTCTTGCAATAGTTCCTAA+AGG 0.549323 7.2:-44391253 None:intergenic
AGTTCTGGAGAATATGCTAA+AGG 0.554471 7.2:+44392409 MS.gene45975:CDS
ATTCTGGGAATAAACTTCCA+TGG 0.555061 7.2:-44391380 None:intergenic
ATGACAATAATAAATAGGTA+AGG 0.557594 7.2:-44392239 None:intergenic
TGAACTCAACGCAGTCATGC+TGG 0.559537 7.2:-44392113 None:intergenic
GTTCATGGTGACGGACGACT+TGG 0.561904 7.2:+44392441 MS.gene45975:CDS
AATATCGAAGCAGTAGCAGT+TGG 0.565733 7.2:+44391292 MS.gene45975:CDS
ACCATCAATGTTCATGGTGA+CGG 0.566339 7.2:+44392432 MS.gene45975:CDS
TCTCTGGACATATGCTTGCA+AGG 0.566382 7.2:+44391333 MS.gene45975:CDS
CCATAACTCTCAGCCGAACA+TGG 0.566993 7.2:-44391150 None:intergenic
CAAAATGTGCGGCACATAGA+GGG 0.570378 7.2:-44392180 None:intergenic
TGTGTATGCTGAGGCAGGCA+AGG 0.577105 7.2:+44391195 MS.gene45975:CDS
GAGTTAGTTACAGAAGACAT+TGG 0.579980 7.2:-44392472 None:intergenic
ACAAATGTCTGTGAAAGTAC+TGG 0.585912 7.2:+44391943 MS.gene45975:CDS
GGAGTCAGGAGGCTTGTCCC+CGG 0.590425 7.2:+44392286 MS.gene45975:CDS
GGTGTCTTAGGCTACTATGA+AGG 0.595126 7.2:-44391877 None:intergenic
ACACAATCACTTGTATACTT+GGG 0.596628 7.2:-44392325 None:intergenic
TAACAGAGGAAATACTTCAT+GGG 0.596922 7.2:-44391430 None:intergenic
TCTGACCAATTGAAGAATGT+GGG 0.604057 7.2:+44392262 MS.gene45975:CDS
ACTCAAGCCAAGGAACTCCA+TGG 0.606428 7.2:+44391363 MS.gene45975:CDS
AGGAACTATTGCAAGACTAG+TGG 0.610083 7.2:+44391258 MS.gene45975:CDS
AGGAAATGCTACTCAAGCCA+AGG 0.613846 7.2:+44391353 MS.gene45975:CDS
TGTTCGGCTGAGAGTTATGG+TGG 0.642853 7.2:+44391153 MS.gene45975:CDS
GAACAAAGTTGTGTATGCTG+AGG 0.649264 7.2:+44391186 MS.gene45975:CDS
TTAGGATCAACGAAAGACAA+TGG 0.661238 7.2:-44392364 None:intergenic
GACCAATTGAAGAATGTGGG+CGG 0.664114 7.2:+44392265 MS.gene45975:CDS
GGTGAGAAGATCAACAAGAG+AGG 0.688693 7.2:+44391964 MS.gene45975:CDS
AGAATGTGGGCGGAGTCAGG+AGG 0.700371 7.2:+44392275 MS.gene45975:CDS
GTTCCTGAGCTCAAAATGTG+CGG 0.718106 7.2:-44392191 None:intergenic
GTGTAGAAGTCAGAGTACCG+GGG 0.770380 7.2:-44392303 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAATATAAAATCAGTTAA+AGG - chr7.2:44391842-44391861 None:intergenic 15.0%
!!! AATTTTGACATACAAAATTT+AGG - chr7.2:44392385-44392404 None:intergenic 15.0%
!!! CTTTAACTGATTTTATATTT+AGG + chr7.2:44391840-44391859 MS.gene45975:intron 15.0%
!! AATGTTCAATTTCAAATTCT+GGG - chr7.2:44391398-44391417 None:intergenic 20.0%
!! ATGACAATAATAAATAGGTA+AGG - chr7.2:44392242-44392261 None:intergenic 20.0%
!! TCAGAATGACAATAATAAAT+AGG - chr7.2:44392247-44392266 None:intergenic 20.0%
!! TTAATAACAAAGATATGTAC+AGG - chr7.2:44391728-44391747 None:intergenic 20.0%
!!! ACTGATTTTATATTTAGGAA+TGG + chr7.2:44391845-44391864 MS.gene45975:intron 20.0%
! AGACATTTGTCTAAATTCAT+AGG - chr7.2:44391933-44391952 None:intergenic 25.0%
! ATGTCAAAATTATCAAGTTC+TGG + chr7.2:44392394-44392413 MS.gene45975:CDS 25.0%
! CAATGTTCAATTTCAAATTC+TGG - chr7.2:44391399-44391418 None:intergenic 25.0%
! GACATTTGTCTAAATTCATA+GGG - chr7.2:44391932-44391951 None:intergenic 25.0%
!!! GTTTGATATTTGATTTGTGT+AGG + chr7.2:44391778-44391797 MS.gene45975:intron 25.0%
AACACAATCACTTGTATACT+TGG - chr7.2:44392329-44392348 None:intergenic 30.0%
AAGAATCAAAATTGCTCTTG+TGG + chr7.2:44391502-44391521 MS.gene45975:intron 30.0%
ACACAATCACTTGTATACTT+GGG - chr7.2:44392328-44392347 None:intergenic 30.0%
AGATAGATATTTGATGTCAC+AGG + chr7.2:44392135-44392154 MS.gene45975:CDS 30.0%
AGTATTTCCTCTGTTAGAAT+CGG + chr7.2:44391437-44391456 MS.gene45975:intron 30.0%
AGTTTCTTAACATTGCCTTT+AGG + chr7.2:44391238-44391257 MS.gene45975:CDS 30.0%
TAACAGAGGAAATACTTCAT+GGG - chr7.2:44391433-44391452 None:intergenic 30.0%
TATGTCATCCCTAATGTTAT+CGG + chr7.2:44391603-44391622 MS.gene45975:intron 30.0%
TTGAACAAGTTAACCATGTT+CGG + chr7.2:44391137-44391156 MS.gene45975:CDS 30.0%
! AGTTTTCTCACTTTCCTATT+AGG + chr7.2:44392031-44392050 MS.gene45975:CDS 30.0%
! TGTTTTTCTTGTAGTAGAAG+TGG + chr7.2:44391463-44391482 MS.gene45975:intron 30.0%
!! AACATGGTTAACTTGTTCAA+TGG - chr7.2:44391137-44391156 None:intergenic 30.0%
ACACTTGTTCCGATAACATT+AGG - chr7.2:44391615-44391634 None:intergenic 35.0%
ACAGGACCTTAAAAACAAAC+TGG + chr7.2:44392153-44392172 MS.gene45975:CDS 35.0%
AGTCTTGCAATAGTTCCTAA+AGG - chr7.2:44391256-44391275 None:intergenic 35.0%
CACCAATCTGAATTTGTGAT+TGG + chr7.2:44391896-44391915 MS.gene45975:CDS 35.0%
CACTTGTTCCGATAACATTA+GGG - chr7.2:44391614-44391633 None:intergenic 35.0%
CTAACAGAGGAAATACTTCA+TGG - chr7.2:44391434-44391453 None:intergenic 35.0%
CTCCAATCACAAATTCAGAT+TGG - chr7.2:44391901-44391920 None:intergenic 35.0%
CTTGAATGTTTCAAACTCCA+AGG - chr7.2:44391653-44391672 None:intergenic 35.0%
GAGATAAGTTCTTTCCTGAA+TGG - chr7.2:44391676-44391695 None:intergenic 35.0%
GAGTTAGTTACAGAAGACAT+TGG - chr7.2:44392475-44392494 None:intergenic 35.0%
TAAAGGACCATCAATGTTCA+TGG + chr7.2:44392426-44392445 MS.gene45975:CDS 35.0%
TCTGACCAATTGAAGAATGT+GGG + chr7.2:44392262-44392281 MS.gene45975:CDS 35.0%
TTAGGATCAACGAAAGACAA+TGG - chr7.2:44392367-44392386 None:intergenic 35.0%
TTATCTCATCAGCGTAAAAG+AGG + chr7.2:44391689-44391708 MS.gene45975:intron 35.0%
TTCTGACCAATTGAAGAATG+TGG + chr7.2:44392261-44392280 MS.gene45975:CDS 35.0%
TTGAAACATTCAAGCCATTC+AGG + chr7.2:44391659-44391678 MS.gene45975:intron 35.0%
TTTCTCACTTTCCTATTAGG+AGG + chr7.2:44392034-44392053 MS.gene45975:CDS 35.0%
! ACAAATGTCTGTGAAAGTAC+TGG + chr7.2:44391943-44391962 MS.gene45975:CDS 35.0%
! ATTCTGGGAATAAACTTCCA+TGG - chr7.2:44391383-44391402 None:intergenic 35.0%
! CAAATTCAGATTGGTGTCTT+AGG - chr7.2:44391892-44391911 None:intergenic 35.0%
! CTGCAGATATTGGTAATATC+TGG - chr7.2:44392216-44392235 None:intergenic 35.0%
! TCTGGTTTGATTCAAGCAAA+CGG + chr7.2:44391556-44391575 MS.gene45975:intron 35.0%
!! AGTTCTGGAGAATATGCTAA+AGG + chr7.2:44392409-44392428 MS.gene45975:CDS 35.0%
!!! GGTTCACCAGTTTGTTTTTA+AGG - chr7.2:44392162-44392181 None:intergenic 35.0%
AACAAGTGTTCGTCTACTTC+AGG + chr7.2:44391626-44391645 MS.gene45975:intron 40.0%
AATATCGAAGCAGTAGCAGT+TGG + chr7.2:44391292-44391311 MS.gene45975:CDS 40.0%
AATGGACAGAGTAGTAATCC+CGG + chr7.2:44391531-44391550 MS.gene45975:intron 40.0%
ACCATCAATGTTCATGGTGA+CGG + chr7.2:44392432-44392451 MS.gene45975:CDS 40.0%
AGGAACTATTGCAAGACTAG+TGG + chr7.2:44391258-44391277 MS.gene45975:CDS 40.0%
CTTGAATCAAACCAGAATCC+GGG - chr7.2:44391552-44391571 None:intergenic 40.0%
GAACAAAGTTGTGTATGCTG+AGG + chr7.2:44391186-44391205 MS.gene45975:CDS 40.0%
GCTTGAATCAAACCAGAATC+CGG - chr7.2:44391553-44391572 None:intergenic 40.0%
TAAACTTCCATGGAGTTCCT+TGG - chr7.2:44391373-44391392 None:intergenic 40.0%
TATGCAACACTCCTCCTAAT+AGG - chr7.2:44392048-44392067 None:intergenic 40.0%
TCAAGCAAACGGATATGTCA+AGG + chr7.2:44391567-44391586 MS.gene45975:intron 40.0%
TTGCTCTTGTGGAAGAGTAA+TGG + chr7.2:44391513-44391532 MS.gene45975:intron 40.0%
! AACAAGACCGATTCTAACAG+AGG - chr7.2:44391447-44391466 None:intergenic 40.0%
!! GGTTTTGTATGCTAAAGCTG+AGG + chr7.2:44391985-44392004 MS.gene45975:CDS 40.0%
AAAGTTGTGTATGCTGAGGC+AGG + chr7.2:44391190-44391209 MS.gene45975:CDS 45.0%
AGAGTAGTAATCCCGGATTC+TGG + chr7.2:44391538-44391557 MS.gene45975:intron 45.0%
AGGAAATGCTACTCAAGCCA+AGG + chr7.2:44391353-44391372 MS.gene45975:CDS 45.0%
CAAAATGTGCGGCACATAGA+GGG - chr7.2:44392183-44392202 None:intergenic 45.0%
GACCAATTGAAGAATGTGGG+CGG + chr7.2:44392265-44392284 MS.gene45975:CDS 45.0%
GGTAAGGAAGCTGCAGATAT+TGG - chr7.2:44392226-44392245 None:intergenic 45.0%
GGTGAGAAGATCAACAAGAG+AGG + chr7.2:44391964-44391983 MS.gene45975:CDS 45.0%
GGTGTCTTAGGCTACTATGA+AGG - chr7.2:44391880-44391899 None:intergenic 45.0%
GTTCCTGAGCTCAAAATGTG+CGG - chr7.2:44392194-44392213 None:intergenic 45.0%
TCAAAATGTGCGGCACATAG+AGG - chr7.2:44392184-44392203 None:intergenic 45.0%
TCCGTCACCATGAACATTGA+TGG - chr7.2:44392436-44392455 None:intergenic 45.0%
TCTCTGGACATATGCTTGCA+AGG + chr7.2:44391333-44391352 MS.gene45975:CDS 45.0%
!! GAGTTATGGTGGACAGAGAA+AGG + chr7.2:44391164-44391183 MS.gene45975:CDS 45.0%
!! GGAGTGTTGCATATGCTTCA+AGG + chr7.2:44392055-44392074 MS.gene45975:CDS 45.0%
!!! AATTAATTATTTTATATTTG+AGG + chr7.2:44391756-44391775 MS.gene45975:intron 5.0%
ACTCAAGCCAAGGAACTCCA+TGG + chr7.2:44391363-44391382 MS.gene45975:CDS 50.0%
CCATAACTCTCAGCCGAACA+TGG - chr7.2:44391153-44391172 None:intergenic 50.0%
CCATGTTCGGCTGAGAGTTA+TGG + chr7.2:44391150-44391169 MS.gene45975:CDS 50.0%
CTCCGCCCACATTCTTCAAT+TGG - chr7.2:44392270-44392289 None:intergenic 50.0%
GGGTGTAGAAGTCAGAGTAC+CGG - chr7.2:44392308-44392327 None:intergenic 50.0%
GTCCAGAGATACAGTGAGCT+CGG - chr7.2:44391322-44391341 None:intergenic 50.0%
GTTCGTCTACTTCAGGACCT+TGG + chr7.2:44391633-44391652 MS.gene45975:intron 50.0%
TCCAGAGATACAGTGAGCTC+GGG - chr7.2:44391321-44391340 None:intergenic 50.0%
TGAACTCAACGCAGTCATGC+TGG - chr7.2:44392116-44392135 None:intergenic 50.0%
TGTTCGGCTGAGAGTTATGG+TGG + chr7.2:44391153-44391172 MS.gene45975:CDS 50.0%
! GGTGTAGAAGTCAGAGTACC+GGG - chr7.2:44392307-44392326 None:intergenic 50.0%
!! GTGTAGAAGTCAGAGTACCG+GGG - chr7.2:44392306-44392325 None:intergenic 50.0%
TGAAGAATGTGGGCGGAGTC+AGG + chr7.2:44392272-44392291 MS.gene45975:CDS 55.0%
TGTGTATGCTGAGGCAGGCA+AGG + chr7.2:44391195-44391214 MS.gene45975:CDS 55.0%
! GTGCCGCACATTTTGAGCTC+AGG + chr7.2:44392188-44392207 MS.gene45975:CDS 55.0%
!! GTTCATGGTGACGGACGACT+TGG + chr7.2:44392441-44392460 MS.gene45975:CDS 55.0%
AGAATGTGGGCGGAGTCAGG+AGG + chr7.2:44392275-44392294 MS.gene45975:CDS 60.0%
GCCCGAGCTCACTGTATCTC+TGG + chr7.2:44391317-44391336 MS.gene45975:CDS 60.0%
GGAGTCAGGAGGCTTGTCCC+CGG + chr7.2:44392286-44392305 MS.gene45975:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 44391112 44392510 44391112 ID=MS.gene45975
chr7.2 mRNA 44391112 44392510 44391112 ID=MS.gene45975.t1;Parent=MS.gene45975
chr7.2 exon 44391112 44391437 44391112 ID=MS.gene45975.t1.exon1;Parent=MS.gene45975.t1
chr7.2 CDS 44391112 44391437 44391112 ID=cds.MS.gene45975.t1;Parent=MS.gene45975.t1
chr7.2 exon 44391862 44392510 44391862 ID=MS.gene45975.t1.exon2;Parent=MS.gene45975.t1
chr7.2 CDS 44391862 44392510 44391862 ID=cds.MS.gene45975.t1;Parent=MS.gene45975.t1
Gene Sequence

>MS.gene45975

ATGGCAGATAATTATACTCGATCCATTGAACAAGTTAACCATGTTCGGCTGAGAGTTATGGTGGACAGAGAAAGGAACAAAGTTGTGTATGCTGAGGCAGGCAAGGATTTTGTTGATGTTCTTTTGAGTTTCTTAACATTGCCTTTAGGAACTATTGCAAGACTAGTGGCTAAGCAGTCAAATATCGAAGCAGTAGCAGTTGGAAGCCCGAGCTCACTGTATCTCTGGACATATGCTTGCAAGGAAATGCTACTCAAGCCAAGGAACTCCATGGAAGTTTATTCCCAGAATTTGAAATTGAACATTGACGACACTGAACCCATGAAGTATTTCCTCTGTTAGAATCGGTCTTGTTTTTCTTGTAGTAGAAGTGGCTTTTTGAGCACTTTTAAGAATCAAAATTGCTCTTGTGGAAGAGTAATGGACAGAGTAGTAATCCCGGATTCTGGTTTGATTCAAGCAAACGGATATGTCAAGGTTGTGATGATCTTTATGTCATCCCTAATGTTATCGGAACAAGTGTTCGTCTACTTCAGGACCTTGGAGTTTGAAACATTCAAGCCATTCAGGAAAGAACTTATCTCATCAGCGTAAAAGAGGCACGCTTTCTTAGCCTGTACATATCTTTGTTATTAATTATTTTTAATTAATTATTTTATATTTGAGGTTTGATATTTGATTTGTGTAGGTACTTGATCTTCTCAAGTTGTCAATGCTCTCAAATACTCCTTTAACTGATTTTATATTTAGGAATGGTAATCAGTTCCTTCATAGTAGCCTAAGACACCAATCTGAATTTGTGATTGGAGATGTATCACCCTATGAATTTAGACAAATGTCTGTGAAAGTACTGGTGAGAAGATCAACAAGAGAGGTTTTGTATGCTAAAGCTGAGGAAGATTTTGCGAACTTTCTTTTGAGTTTTCTCACTTTCCTATTAGGAGGAGTGTTGCATATGCTTCAAGGATTTTCTTCTATAAGCTGCATTGATAATTTATACACCAGCATGACTGCGTTGAGTTCAGATAGATATTTGATGTCACAGGACCTTAAAAACAAACTGGTGAACCCTCTATGTGCCGCACATTTTGAGCTCAGGAACCAGATATTACCAATATCTGCAGCTTCCTTACCTATTTATTATTGTCATTCTGACCAATTGAAGAATGTGGGCGGAGTCAGGAGGCTTGTCCCCGGTACTCTGACTTCTACACCCAAGTATACAAGTGATTGTGTTAGTCAAGAAAATACACCATTGTCTTTCGTTGATCCTAAATTTTGTATGTCAAAATTATCAAGTTCTGGAGAATATGCTAAAGGACCATCAATGTTCATGGTGACGGACGACTTGGTTGTGACTCCAATGTCTTCTGTAACTAACTCTTTCACATCTAATTAG
Protein sequence

>MS.gene45975.t1

MADNYTRSIEQVNHVRLRVMVDRERNKVVYAEAGKDFVDVLLSFLTLPLGTIARLVAKQSNIEAVAVGSPSSLYLWTYACKEMLLKPRNSMEVYSQNLKLNIDDTEPMKNGNQFLHSSLRHQSEFVIGDVSPYEFRQMSVKVLVRRSTREVLYAKAEEDFANFLLSFLTFLLGGVLHMLQGFSSISCIDNLYTSMTALSSDRYLMSQDLKNKLVNPLCAAHFELRNQILPISAASLPIYYCHSDQLKNVGGVRRLVPGTLTSTPKYTSDCVSQENTPLSFVDPKFCMSKLSSSGEYAKGPSMFMVTDDLVVTPMSSVTNSFTSN