Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34916.t1 | RHN42401.1 | 98.4 | 364 | 6 | 0 | 2 | 365 | 1 | 364 | 2.50E-199 | 704.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34916.t1 | Q9LRR9 | 74.8 | 365 | 89 | 1 | 4 | 365 | 3 | 367 | 1.8e-153 | 543.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34916.t1 | A0A396GQE5 | 98.4 | 364 | 6 | 0 | 2 | 365 | 1 | 364 | 1.8e-199 | 704.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene34916 | 0.822745 | 2.01E-53 | -1.69E-46 |
| MS.gene049171 | MS.gene34916 | 0.801976 | 6.98E-49 | -1.69E-46 |
| MS.gene049173 | MS.gene34916 | 0.808429 | 3.11E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene34916 | 0.837003 | 6.71E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene34916 | 0.847459 | 1.14E-59 | -1.69E-46 |
| MS.gene049232 | MS.gene34916 | 0.832647 | 8.39E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene34916 | 0.831989 | 1.22E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene34916 | 0.841472 | 4.65E-58 | -1.69E-46 |
| MS.gene049356 | MS.gene34916 | 0.86027 | 2.32E-63 | -1.69E-46 |
| MS.gene049369 | MS.gene34916 | 0.864912 | 8.64E-65 | -1.69E-46 |
| MS.gene049396 | MS.gene34916 | 0.850768 | 1.37E-60 | -1.69E-46 |
| MS.gene049427 | MS.gene34916 | 0.824393 | 8.27E-54 | -1.69E-46 |
| MS.gene049609 | MS.gene34916 | 0.816741 | 4.73E-52 | -1.69E-46 |
| MS.gene049633 | MS.gene34916 | 0.801904 | 7.22E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene34916 | 0.857267 | 1.83E-62 | -1.69E-46 |
| MS.gene049828 | MS.gene34916 | 0.808367 | 3.21E-50 | -1.69E-46 |
| MS.gene049907 | MS.gene34916 | 0.812792 | 3.55E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene34916 | 0.827662 | 1.38E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene34916 | 0.810258 | 1.26E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene34916 | 0.81676 | 4.68E-52 | -1.69E-46 |
| MS.gene050432 | MS.gene34916 | 0.805483 | 1.31E-49 | -1.69E-46 |
| MS.gene050499 | MS.gene34916 | 0.807568 | 4.74E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene34916 | 0.827962 | 1.17E-54 | -1.69E-46 |
| MS.gene050518 | MS.gene34916 | 0.821277 | 4.40E-53 | -1.69E-46 |
| MS.gene050520 | MS.gene34916 | 0.80684 | 6.77E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene34916 | 0.803022 | 4.25E-49 | -1.69E-46 |
| MS.gene050662 | MS.gene34916 | 0.80064 | 1.31E-48 | -1.69E-46 |
| MS.gene050670 | MS.gene34916 | 0.808548 | 2.93E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene34916 | 0.801318 | 9.53E-49 | -1.69E-46 |
| MS.gene050686 | MS.gene34916 | 0.821264 | 4.43E-53 | -1.69E-46 |
| MS.gene050747 | MS.gene34916 | 0.841665 | 4.14E-58 | -1.69E-46 |
| MS.gene050767 | MS.gene34916 | 0.823331 | 1.47E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene34916 | 0.824249 | 8.94E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene34916 | 0.850743 | 1.39E-60 | -1.69E-46 |
| MS.gene05080 | MS.gene34916 | 0.849815 | 2.54E-60 | -1.69E-46 |
| MS.gene050868 | MS.gene34916 | 0.819915 | 9.04E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene34916 | 0.821843 | 3.25E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene34916 | 0.829847 | 4.09E-55 | -1.69E-46 |
| MS.gene05100 | MS.gene34916 | 0.810494 | 1.12E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene34916 | 0.826508 | 2.61E-54 | -1.69E-46 |
| MS.gene051228 | MS.gene34916 | 0.839314 | 1.71E-57 | -1.69E-46 |
| MS.gene051387 | MS.gene34916 | 0.802231 | 6.19E-49 | -1.69E-46 |
| MS.gene051509 | MS.gene34916 | 0.836917 | 7.07E-57 | -1.69E-46 |
| MS.gene051551 | MS.gene34916 | 0.801614 | 8.29E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene34916 | 0.873025 | 2.02E-67 | -1.69E-46 |
| MS.gene051692 | MS.gene34916 | 0.809309 | 2.02E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene34916 | 0.806314 | 8.73E-50 | -1.69E-46 |
| MS.gene051734 | MS.gene34916 | 0.817171 | 3.79E-52 | -1.69E-46 |
| MS.gene051858 | MS.gene34916 | 0.800758 | 1.24E-48 | -1.69E-46 |
| MS.gene051874 | MS.gene34916 | 0.851976 | 6.25E-61 | -1.69E-46 |
| MS.gene052164 | MS.gene34916 | 0.860842 | 1.56E-63 | -1.69E-46 |
| MS.gene052188 | MS.gene34916 | 0.812668 | 3.78E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene34916 | 0.812798 | 3.54E-51 | -1.69E-46 |
| MS.gene052290 | MS.gene34916 | 0.806022 | 1.01E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene34916 | 0.820375 | 7.09E-53 | -1.69E-46 |
| MS.gene052421 | MS.gene34916 | 0.850545 | 1.58E-60 | -1.69E-46 |
| MS.gene052615 | MS.gene34916 | 0.805598 | 1.24E-49 | -1.69E-46 |
| MS.gene052916 | MS.gene34916 | 0.808309 | 3.30E-50 | -1.69E-46 |
| MS.gene053009 | MS.gene34916 | 0.853087 | 3.01E-61 | -1.69E-46 |
| MS.gene053018 | MS.gene34916 | 0.802505 | 5.43E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene34916 | 0.834234 | 3.37E-56 | -1.69E-46 |
| MS.gene053104 | MS.gene34916 | 0.85009 | 2.13E-60 | -1.69E-46 |
| MS.gene053207 | MS.gene34916 | 0.804284 | 2.33E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene34916 | 0.830925 | 2.23E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene34916 | 0.826509 | 2.61E-54 | -1.69E-46 |
| MS.gene053322 | MS.gene34916 | 0.826828 | 2.19E-54 | -1.69E-46 |
| MS.gene053436 | MS.gene34916 | 0.801506 | 8.72E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene34916 | 0.801462 | 8.90E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene34916 | 0.866332 | 3.08E-65 | -1.69E-46 |
| MS.gene053626 | MS.gene34916 | 0.865045 | 7.85E-65 | -1.69E-46 |
| MS.gene053632 | MS.gene34916 | 0.853042 | 3.10E-61 | -1.69E-46 |
| MS.gene053813 | MS.gene34916 | 0.825714 | 4.03E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene34916 | 0.816059 | 6.72E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene34916 | 0.858233 | 9.48E-63 | -1.69E-46 |
| MS.gene053916 | MS.gene34916 | 0.89635 | 4.02E-76 | -1.69E-46 |
| MS.gene054003 | MS.gene34916 | 0.829282 | 5.62E-55 | -1.69E-46 |
| MS.gene054123 | MS.gene34916 | 0.802898 | 4.51E-49 | -1.69E-46 |
| MS.gene054408 | MS.gene34916 | 0.801073 | 1.07E-48 | -1.69E-46 |
| MS.gene054595 | MS.gene34916 | 0.826105 | 3.26E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene34916 | 0.853762 | 1.93E-61 | -1.69E-46 |
| MS.gene054954 | MS.gene34916 | 0.807643 | 4.57E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene34916 | 0.879249 | 1.45E-69 | -1.69E-46 |
| MS.gene055224 | MS.gene34916 | 0.816876 | 4.41E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene34916 | 0.809222 | 2.10E-50 | -1.69E-46 |
| MS.gene055397 | MS.gene34916 | 0.833507 | 5.13E-56 | -1.69E-46 |
| MS.gene055499 | MS.gene34916 | 0.811284 | 7.56E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene34916 | 0.82327 | 1.52E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene34916 | 0.818787 | 1.63E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene34916 | 0.852342 | 4.92E-61 | -1.69E-46 |
| MS.gene055748 | MS.gene34916 | 0.809916 | 1.49E-50 | -1.69E-46 |
| MS.gene055750 | MS.gene34916 | 0.819513 | 1.12E-52 | -1.69E-46 |
| MS.gene055751 | MS.gene34916 | 0.803599 | 3.23E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene34916 | 0.806686 | 7.29E-50 | -1.69E-46 |
| MS.gene055911 | MS.gene34916 | 0.805085 | 1.58E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene34916 | 0.848973 | 4.35E-60 | -1.69E-46 |
| MS.gene055941 | MS.gene34916 | 0.833696 | 4.60E-56 | -1.69E-46 |
| MS.gene056166 | MS.gene34916 | 0.814264 | 1.68E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene34916 | 0.817504 | 3.19E-52 | -1.69E-46 |
| MS.gene056422 | MS.gene34916 | 0.869743 | 2.46E-66 | -1.69E-46 |
| MS.gene056448 | MS.gene34916 | 0.801312 | 9.56E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene34916 | 0.809685 | 1.67E-50 | -1.69E-46 |
| MS.gene056487 | MS.gene34916 | 0.823456 | 1.37E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene34916 | 0.802767 | 4.80E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene34916 | 0.814148 | 1.79E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene34916 | 0.839963 | 1.16E-57 | -1.69E-46 |
| MS.gene05664 | MS.gene34916 | 0.840652 | 7.64E-58 | -1.69E-46 |
| MS.gene056657 | MS.gene34916 | 0.839299 | 1.72E-57 | -1.69E-46 |
| MS.gene05666 | MS.gene34916 | 0.830585 | 2.70E-55 | -1.69E-46 |
| MS.gene056897 | MS.gene34916 | 0.815673 | 8.20E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene34916 | 0.805185 | 1.51E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene34916 | 0.828154 | 1.05E-54 | -1.69E-46 |
| MS.gene057086 | MS.gene34916 | 0.821306 | 4.33E-53 | -1.69E-46 |
| MS.gene057129 | MS.gene34916 | 0.84726 | 1.29E-59 | -1.69E-46 |
| MS.gene057146 | MS.gene34916 | 0.837559 | 4.84E-57 | -1.69E-46 |
| MS.gene05735 | MS.gene34916 | 0.847332 | 1.24E-59 | -1.69E-46 |
| MS.gene057416 | MS.gene34916 | 0.848007 | 8.06E-60 | -1.69E-46 |
| MS.gene057537 | MS.gene34916 | 0.840701 | 7.42E-58 | -1.69E-46 |
| MS.gene057734 | MS.gene34916 | 0.870453 | 1.44E-66 | -1.69E-46 |
| MS.gene05787 | MS.gene34916 | 0.814819 | 1.27E-51 | -1.69E-46 |
| MS.gene057926 | MS.gene34916 | 0.841935 | 3.51E-58 | -1.69E-46 |
| MS.gene058019 | MS.gene34916 | 0.817817 | 2.71E-52 | -1.69E-46 |
| MS.gene058075 | MS.gene34916 | 0.838488 | 2.79E-57 | -1.69E-46 |
| MS.gene058120 | MS.gene34916 | 0.811959 | 5.39E-51 | -1.69E-46 |
| MS.gene058130 | MS.gene34916 | 0.842383 | 2.67E-58 | -1.69E-46 |
| MS.gene058293 | MS.gene34916 | 0.813106 | 3.03E-51 | -1.69E-46 |
| MS.gene058323 | MS.gene34916 | 0.805398 | 1.36E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene34916 | 0.840085 | 1.08E-57 | -1.69E-46 |
| MS.gene058459 | MS.gene34916 | 0.866804 | 2.18E-65 | -1.69E-46 |
| MS.gene058544 | MS.gene34916 | 0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene34916 | 0.800913 | 1.15E-48 | -1.69E-46 |
| MS.gene058723 | MS.gene34916 | 0.813567 | 2.40E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene34916 | 0.808217 | 3.45E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene34916 | 0.812302 | 4.54E-51 | -1.69E-46 |
| MS.gene05913 | MS.gene34916 | 0.850539 | 1.59E-60 | -1.69E-46 |
| MS.gene059305 | MS.gene34916 | 0.827322 | 1.67E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene34916 | 0.830237 | 3.29E-55 | -1.69E-46 |
| MS.gene059366 | MS.gene34916 | 0.814266 | 1.68E-51 | -1.69E-46 |
| MS.gene059367 | MS.gene34916 | 0.865014 | 8.03E-65 | -1.69E-46 |
| MS.gene059368 | MS.gene34916 | 0.862215 | 5.94E-64 | -1.69E-46 |
| MS.gene059536 | MS.gene34916 | 0.831034 | 2.10E-55 | -1.69E-46 |
| MS.gene059667 | MS.gene34916 | 0.806061 | 9.88E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene34916 | 0.800366 | 1.49E-48 | -1.69E-46 |
| MS.gene059677 | MS.gene34916 | 0.803271 | 3.77E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene34916 | 0.834462 | 2.96E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene34916 | 0.814245 | 1.70E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene34916 | 0.820741 | 5.84E-53 | -1.69E-46 |
| MS.gene059711 | MS.gene34916 | 0.857955 | 1.15E-62 | -1.69E-46 |
| MS.gene059718 | MS.gene34916 | 0.836241 | 1.05E-56 | -1.69E-46 |
| MS.gene059807 | MS.gene34916 | 0.820794 | 5.68E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene34916 | 0.831575 | 1.54E-55 | -1.69E-46 |
| MS.gene05986 | MS.gene34916 | 0.818745 | 1.67E-52 | -1.69E-46 |
| MS.gene059960 | MS.gene34916 | 0.820561 | 6.43E-53 | -1.69E-46 |
| MS.gene060356 | MS.gene34916 | 0.825817 | 3.81E-54 | -1.69E-46 |
| MS.gene060482 | MS.gene34916 | 0.840672 | 7.55E-58 | -1.69E-46 |
| MS.gene060762 | MS.gene34916 | 0.819547 | 1.10E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene34916 | 0.852398 | 4.74E-61 | -1.69E-46 |
| MS.gene060818 | MS.gene34916 | 0.85097 | 1.20E-60 | -1.69E-46 |
| MS.gene060835 | MS.gene34916 | 0.826765 | 2.27E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene34916 | 0.860352 | 2.19E-63 | -1.69E-46 |
| MS.gene06092 | MS.gene34916 | 0.819818 | 9.51E-53 | -1.69E-46 |
| MS.gene06097 | MS.gene34916 | 0.862544 | 4.70E-64 | -1.69E-46 |
| MS.gene061041 | MS.gene34916 | 0.860626 | 1.81E-63 | -1.69E-46 |
| MS.gene061134 | MS.gene34916 | 0.825137 | 5.52E-54 | -1.69E-46 |
| MS.gene061150 | MS.gene34916 | 0.818877 | 1.56E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene34916 | 0.859323 | 4.48E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34916.t1 | MTR_2g070420 | 75.824 | 364 | 85 | 1 | 4 | 364 | 4 | 367 | 0.0 | 563 |
| MS.gene34916.t1 | MTR_1g072440 | 58.824 | 85 | 33 | 1 | 10 | 94 | 4 | 86 | 2.24e-25 | 98.6 |
| MS.gene34916.t1 | MTR_3g076640 | 51.471 | 68 | 30 | 2 | 1 | 67 | 1 | 66 | 7.52e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34916.t1 | AT3G14420 | 74.795 | 365 | 89 | 1 | 4 | 365 | 3 | 367 | 0.0 | 554 |
| MS.gene34916.t1 | AT3G14420 | 74.795 | 365 | 89 | 1 | 4 | 365 | 3 | 367 | 0.0 | 554 |
| MS.gene34916.t1 | AT3G14420 | 74.521 | 365 | 90 | 1 | 4 | 365 | 3 | 367 | 0.0 | 551 |
| MS.gene34916.t1 | AT4G18360 | 71.588 | 359 | 99 | 1 | 4 | 359 | 3 | 361 | 0.0 | 546 |
| MS.gene34916.t1 | AT4G18360 | 71.588 | 359 | 99 | 1 | 4 | 359 | 3 | 361 | 0.0 | 546 |
| MS.gene34916.t1 | AT3G14415 | 73.425 | 365 | 94 | 1 | 4 | 365 | 3 | 367 | 0.0 | 545 |
| MS.gene34916.t1 | AT3G14415 | 73.425 | 365 | 94 | 1 | 4 | 365 | 3 | 367 | 0.0 | 545 |
| MS.gene34916.t1 | AT3G14415 | 71.968 | 371 | 95 | 1 | 4 | 365 | 3 | 373 | 0.0 | 541 |
| MS.gene34916.t1 | AT3G14420 | 74.425 | 348 | 86 | 1 | 21 | 365 | 1 | 348 | 0.0 | 524 |
| MS.gene34916.t1 | AT3G14420 | 73.832 | 321 | 81 | 1 | 48 | 365 | 40 | 360 | 2.15e-167 | 471 |
| MS.gene34916.t1 | AT3G14420 | 73.832 | 321 | 81 | 1 | 48 | 365 | 46 | 366 | 8.39e-167 | 470 |
| MS.gene34916.t1 | AT4G18360 | 71.704 | 311 | 85 | 1 | 4 | 311 | 3 | 313 | 1.42e-166 | 468 |
| MS.gene34916.t1 | AT3G14130 | 57.542 | 358 | 146 | 2 | 4 | 358 | 4 | 358 | 2.71e-145 | 416 |
| MS.gene34916.t1 | AT3G14130 | 57.542 | 358 | 146 | 2 | 4 | 358 | 4 | 358 | 2.71e-145 | 416 |
| MS.gene34916.t1 | AT3G14150 | 57.263 | 358 | 147 | 2 | 4 | 358 | 4 | 358 | 3.53e-144 | 413 |
| MS.gene34916.t1 | AT3G14150 | 57.263 | 358 | 147 | 2 | 4 | 358 | 4 | 358 | 3.53e-144 | 413 |
| MS.gene34916.t1 | AT3G14130 | 57.643 | 314 | 127 | 2 | 48 | 358 | 4 | 314 | 6.06e-125 | 362 |
| MS.gene34916.t1 | AT4G18360 | 69.583 | 240 | 70 | 1 | 4 | 240 | 3 | 242 | 1.09e-120 | 349 |
| MS.gene34916.t1 | AT3G14130 | 57.937 | 252 | 100 | 2 | 110 | 358 | 2 | 250 | 3.82e-100 | 297 |
| MS.gene34916.t1 | AT3G14150 | 56.044 | 273 | 114 | 2 | 89 | 358 | 3 | 272 | 4.14e-99 | 295 |
| MS.gene34916.t1 | AT3G14150 | 56.044 | 273 | 114 | 2 | 89 | 358 | 3 | 272 | 4.14e-99 | 295 |
| MS.gene34916.t1 | AT3G14150 | 56.044 | 273 | 114 | 2 | 89 | 358 | 3 | 272 | 4.14e-99 | 295 |
| MS.gene34916.t1 | AT3G14150 | 56.349 | 252 | 104 | 2 | 110 | 358 | 2 | 250 | 6.69e-97 | 288 |
| MS.gene34916.t1 | AT3G14150 | 56.349 | 252 | 104 | 2 | 110 | 358 | 2 | 250 | 6.69e-97 | 288 |
Find 85 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGATAGGCATTGATATTT+TGG | 0.101254 | 4.1:-16040413 | None:intergenic |
| CTATGTCTCTGCAACTATTA+TGG | 0.217196 | 4.1:+16042764 | MS.gene34916:CDS |
| CTCTGCAACTATTATGGCTT+TGG | 0.314427 | 4.1:+16042770 | MS.gene34916:CDS |
| CATAACCTAGGAGCAATTCT+AGG | 0.358275 | 4.1:-16043565 | None:intergenic |
| AGTCCCGCCTCCGTTATTAA+TGG | 0.374315 | 4.1:+16042322 | MS.gene34916:CDS |
| CTTGTAAACAGGATGTAAAA+TGG | 0.377123 | 4.1:+16042485 | MS.gene34916:intron |
| ATGTGGTTGCCGTTCACTTA+AGG | 0.387309 | 4.1:+16043504 | MS.gene34916:CDS |
| GTTGAGGAGGTTGCTTCAAC+AGG | 0.395753 | 4.1:+16041036 | MS.gene34916:CDS |
| GATTTGACGACAACTGTATT+CGG | 0.401313 | 4.1:+16040388 | MS.gene34916:CDS |
| GGAATCATTGTTTCCAATCA+TGG | 0.403221 | 4.1:+16042726 | MS.gene34916:CDS |
| GCTATACAAGCTGGAGCTGC+TGG | 0.411827 | 4.1:+16042705 | MS.gene34916:CDS |
| AGCTGAAAATGCTGGTTTCA+AGG | 0.413087 | 4.1:+16041975 | MS.gene34916:CDS |
| GCTAGAGCAGCATCAGCAGC+TGG | 0.429151 | 4.1:+16040596 | MS.gene34916:CDS |
| CAGGGTGAGCCATCTGATGC+TGG | 0.429724 | 4.1:-16040450 | None:intergenic |
| CAAAATATCAATGCCTATCA+TGG | 0.437565 | 4.1:+16040414 | MS.gene34916:CDS |
| CCTATCATGGTTGCTCCTAC+AGG | 0.442082 | 4.1:+16040427 | MS.gene34916:CDS |
| GTAATATACTCACATATAGT+TGG | 0.443062 | 4.1:-16041077 | None:intergenic |
| AACTATTATGGCTTTGGAAG+AGG | 0.451225 | 4.1:+16042776 | MS.gene34916:CDS |
| TATATGACCGATCACTCAAC+TGG | 0.451960 | 4.1:+16042347 | MS.gene34916:CDS |
| TTGGCTGCTGACGGTGAAGC+TGG | 0.458711 | 4.1:+16043427 | MS.gene34916:CDS |
| GAATCCTTGAGAATGCATTT+CGG | 0.463806 | 4.1:-16040251 | None:intergenic |
| ATGAAGGCATGGGTCTTGAC+AGG | 0.467582 | 4.1:+16042186 | MS.gene34916:CDS |
| AGTACACCCTTGAGTATGAT+TGG | 0.468235 | 4.1:-16042529 | None:intergenic |
| GTCATATATGCCATTAATAA+CGG | 0.486179 | 4.1:-16042332 | None:intergenic |
| GCATTGGCTCTTGGAGCAGC+TGG | 0.487248 | 4.1:+16043085 | MS.gene34916:CDS |
| CTTACGTCAATAAGAATTCG+TGG | 0.491455 | 4.1:-16040358 | None:intergenic |
| CCTGTAGGAGCAACCATGAT+AGG | 0.494745 | 4.1:-16040427 | None:intergenic |
| CATCCGGAGCAGAAGATGAA+TGG | 0.497546 | 4.1:+16040214 | MS.gene34916:CDS |
| AGTCCATTCATCTTCTGCTC+CGG | 0.506553 | 4.1:-16040217 | None:intergenic |
| AAGTTGGCGAGCACCATGAT+TGG | 0.508320 | 4.1:-16042739 | None:intergenic |
| TAGTGGTCATAAATCATCTT+CGG | 0.509596 | 4.1:-16040189 | None:intergenic |
| ATTTATGACCACTATGCATC+CGG | 0.514790 | 4.1:+16040198 | MS.gene34916:CDS |
| CTTGAGTATGATTGGCAATG+AGG | 0.521559 | 4.1:-16042521 | None:intergenic |
| TGAAGCAATTGCGAAGCAAA+AGG | 0.525383 | 4.1:+16040164 | MS.gene34916:CDS |
| GCTAGGTTAGCTATACAAGC+TGG | 0.532846 | 4.1:+16042696 | MS.gene34916:intron |
| TAGTTCTTCAATCTCACGTA+TGG | 0.533005 | 4.1:-16042164 | None:intergenic |
| CTCATTGCCAATCATACTCA+AGG | 0.542575 | 4.1:+16042522 | MS.gene34916:CDS |
| ATTGAAGAACTATGAAGGCA+TGG | 0.545026 | 4.1:+16042175 | MS.gene34916:CDS |
| TCCTACAGGCCAGCATCAGA+TGG | 0.549915 | 4.1:+16040441 | MS.gene34916:CDS |
| CATCAGATGGCTCACCCTGA+AGG | 0.551255 | 4.1:+16040454 | MS.gene34916:CDS |
| GTGAGAAGAGCTGAAAATGC+TGG | 0.552801 | 4.1:+16041967 | MS.gene34916:CDS |
| TCACCTTCCAGTTGAGTGAT+CGG | 0.557754 | 4.1:-16042354 | None:intergenic |
| ATCAGCAGCTGGCACCATCA+TGG | 0.558759 | 4.1:+16040607 | MS.gene34916:CDS |
| AGCTCTTCTCACAAGTTGAG+TGG | 0.562053 | 4.1:-16041956 | None:intergenic |
| TTGCAGAGACATAGTCAAGT+TGG | 0.563204 | 4.1:-16042755 | None:intergenic |
| CAACACATAATATACCTTCA+GGG | 0.566358 | 4.1:-16040468 | None:intergenic |
| ATGGATGGTGGAGTCCGCCG+TGG | 0.569125 | 4.1:+16043046 | MS.gene34916:CDS |
| GTGAGATTGAAGAACTATGA+AGG | 0.571383 | 4.1:+16042170 | MS.gene34916:CDS |
| ATGCCATTAATAACGGAGGC+GGG | 0.574334 | 4.1:-16042325 | None:intergenic |
| GCCATCTGATGCTGGCCTGT+AGG | 0.574499 | 4.1:-16040442 | None:intergenic |
| AGTTGGAGGAAACGAATGCC+AGG | 0.577016 | 4.1:-16041060 | None:intergenic |
| TAGGTTGTACAAGCTGCAGA+TGG | 0.586843 | 4.1:+16043007 | MS.gene34916:intron |
| TTGAAGAACTATGAAGGCAT+GGG | 0.587736 | 4.1:+16042176 | MS.gene34916:CDS |
| AAACTGCAGAGTCTGCAGTA+AGG | 0.591132 | 4.1:-16042005 | None:intergenic |
| TTCTTCAATCTCACGTATGG+CGG | 0.592020 | 4.1:-16042161 | None:intergenic |
| GCAGCCAATGCGTACACCAC+AGG | 0.593845 | 4.1:-16043412 | None:intergenic |
| CTGTGACAGACACTAGCCAC+AGG | 0.596253 | 4.1:+16041000 | MS.gene34916:intron |
| AGAACCGAAATGCATTCTCA+AGG | 0.600628 | 4.1:+16040247 | MS.gene34916:CDS |
| AATAAACTTACTATCTTCAG+CGG | 0.608699 | 4.1:-16042554 | None:intergenic |
| ATATACTCACATATAGTTGG+AGG | 0.614105 | 4.1:-16041074 | None:intergenic |
| GAGGTTGCTTCAACAGGACC+TGG | 0.614445 | 4.1:+16041042 | MS.gene34916:CDS |
| TATGCCATTAATAACGGAGG+CGG | 0.617104 | 4.1:-16042326 | None:intergenic |
| TGGATGGTGGAGTCCGCCGT+GGG | 0.619520 | 4.1:+16043047 | MS.gene34916:CDS |
| CGATCATGTTGTAACAGAGT+GGG | 0.619905 | 4.1:+16043537 | MS.gene34916:CDS |
| ACCGTCCTAGAATTGCTCCT+AGG | 0.620601 | 4.1:+16043560 | MS.gene34916:CDS |
| TGACCGATCACTCAACTGGA+AGG | 0.625791 | 4.1:+16042351 | MS.gene34916:CDS |
| GATGTTTAAAGACAGAAATG+TGG | 0.626344 | 4.1:+16041933 | MS.gene34916:intron |
| GAGTTATGTCCTTAAGTGAA+CGG | 0.633425 | 4.1:-16043513 | None:intergenic |
| TGTGACAGACACTAGCCACA+GGG | 0.633960 | 4.1:+16041001 | MS.gene34916:intron |
| TGGCGGAAACCATACCATGA+TGG | 0.636148 | 4.1:-16040621 | None:intergenic |
| ACCTAGGAGCAATTCTAGGA+CGG | 0.641673 | 4.1:-16043561 | None:intergenic |
| TGAAGGCATGGGTCTTGACA+GGG | 0.645088 | 4.1:+16042187 | MS.gene34916:CDS |
| CTTCTGCTCCGGATGCATAG+TGG | 0.647437 | 4.1:-16040206 | None:intergenic |
| AGACTGATATCTCATAACCT+AGG | 0.651330 | 4.1:-16043577 | None:intergenic |
| AAGACCTGTGGTGTACGCAT+TGG | 0.656184 | 4.1:+16043408 | MS.gene34916:CDS |
| GCGATCATGTTGTAACAGAG+TGG | 0.657974 | 4.1:+16043536 | MS.gene34916:CDS |
| TCATTGCCAATCATACTCAA+GGG | 0.658676 | 4.1:+16042523 | MS.gene34916:CDS |
| GTGTACGCATTGGCTGCTGA+CGG | 0.667917 | 4.1:+16043418 | MS.gene34916:CDS |
| GAAATAACCATGGCACTATG+TGG | 0.673264 | 4.1:+16043487 | MS.gene34916:CDS |
| TGATGAGCTTGAAATAACCA+TGG | 0.677579 | 4.1:+16043477 | MS.gene34916:CDS |
| ACGGCAACCACATAGTGCCA+TGG | 0.678893 | 4.1:-16043494 | None:intergenic |
| ATATATGCCATTAATAACGG+AGG | 0.679840 | 4.1:-16042329 | None:intergenic |
| ATATCAGATTGGAAGACCTG+TGG | 0.689539 | 4.1:+16043396 | MS.gene34916:intron |
| AACACTAAAAGTAGCCCCTG+TGG | 0.698154 | 4.1:-16041016 | None:intergenic |
| GTGACAGACACTAGCCACAG+GGG | 0.743558 | 4.1:+16041002 | MS.gene34916:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAATTATTATTAGTA+AGG | - | chr4.1:16042924-16042943 | None:intergenic | 10.0% |
| !! | AAAAATTAAAAAATTGCTAT+CGG | + | chr4.1:16043245-16043264 | MS.gene34916:intron | 10.0% |
| !! | TTATTAACAAACTTTAAATT+TGG | - | chr4.1:16043223-16043242 | None:intergenic | 10.0% |
| !! | AAAAAATGAAATCGTTAAAA+AGG | + | chr4.1:16040862-16040881 | MS.gene34916:intron | 15.0% |
| !! | AAAAAGGATTTAGATTTAAA+TGG | + | chr4.1:16040878-16040897 | MS.gene34916:intron | 15.0% |
| !! | AAAATTCAAACAAAAATCAA+AGG | - | chr4.1:16042622-16042641 | None:intergenic | 15.0% |
| !! | AAGTAAATAAGTACAATAAA+AGG | - | chr4.1:16040757-16040776 | None:intergenic | 15.0% |
| !! | AATATTAAATAGCAACATTA+AGG | - | chr4.1:16042265-16042284 | None:intergenic | 15.0% |
| !! | TAAATAATCTAATTGTAATG+TGG | + | chr4.1:16043155-16043174 | MS.gene34916:intron | 15.0% |
| !! | TTCATAAAGTTAAATTAACA+AGG | - | chr4.1:16041575-16041594 | None:intergenic | 15.0% |
| !!! | AATGTTGCTATTTAATATTT+GGG | + | chr4.1:16042266-16042285 | MS.gene34916:intron | 15.0% |
| !!! | TAATGTTGCTATTTAATATT+TGG | + | chr4.1:16042265-16042284 | MS.gene34916:intron | 15.0% |
| !!! | TAGTTCATATCATTAATTTT+AGG | - | chr4.1:16041683-16041702 | None:intergenic | 15.0% |
| !! | AAAACTTCATCAAAATATTC+AGG | - | chr4.1:16042125-16042144 | None:intergenic | 20.0% |
| !! | AAAATAACTTAAAGAATTGC+AGG | + | chr4.1:16041648-16041667 | MS.gene34916:intron | 20.0% |
| !! | AACATACAAGGTTAAATTAA+AGG | - | chr4.1:16040319-16040338 | None:intergenic | 20.0% |
| !! | ACATACAAGGTTAAATTAAA+GGG | - | chr4.1:16040318-16040337 | None:intergenic | 20.0% |
| !! | ATGAAAAATAAATCTTGGAA+TGG | - | chr4.1:16042891-16042910 | None:intergenic | 20.0% |
| !! | CTATTTAATATTTGGGAAAT+TGG | + | chr4.1:16042273-16042292 | MS.gene34916:intron | 20.0% |
| !! | GAAAAGTAAATCTATAATAC+AGG | - | chr4.1:16043367-16043386 | None:intergenic | 20.0% |
| !! | TATAATGAGTTTGCAAATTA+AGG | + | chr4.1:16041281-16041300 | MS.gene34916:intron | 20.0% |
| !! | TATAGCATTATTACTATAAG+TGG | - | chr4.1:16041265-16041284 | None:intergenic | 20.0% |
| !! | TATCTTACTCTAATATAGAA+TGG | + | chr4.1:16040710-16040729 | MS.gene34916:intron | 20.0% |
| !! | TATTGTACTTATTTACTTGT+TGG | + | chr4.1:16040759-16040778 | MS.gene34916:intron | 20.0% |
| !! | TTATTATTAGTAAGGAAACA+AGG | - | chr4.1:16042916-16042935 | None:intergenic | 20.0% |
| !!! | ATGTTTTGCTATTAAAATGA+TGG | - | chr4.1:16041807-16041826 | None:intergenic | 20.0% |
| !!! | TGTAATATTTTTTACAACCT+GGG | + | chr4.1:16040959-16040978 | MS.gene34916:intron | 20.0% |
| !!! | TTCATTTGTGTTTTGTTAAA+GGG | + | chr4.1:16043178-16043197 | MS.gene34916:intron | 20.0% |
| !!! | TTGTAATATTTTTTACAACC+TGG | + | chr4.1:16040958-16040977 | MS.gene34916:intron | 20.0% |
| ! | AAACTTAAATGTCAAATGAC+TGG | - | chr4.1:16040497-16040516 | None:intergenic | 25.0% |
| ! | AAGCAATATACTTCTTGATT+TGG | - | chr4.1:16040673-16040692 | None:intergenic | 25.0% |
| ! | AATAAACTTACTATCTTCAG+CGG | - | chr4.1:16042557-16042576 | None:intergenic | 25.0% |
| ! | ACTAGAGTAGAGAATAAATA+TGG | - | chr4.1:16040644-16040663 | None:intergenic | 25.0% |
| ! | AGGCAATGAAAAATAAATCT+TGG | - | chr4.1:16042896-16042915 | None:intergenic | 25.0% |
| ! | ATAAAATAAGATAAAGACCG+TGG | + | chr4.1:16041770-16041789 | MS.gene34916:intron | 25.0% |
| ! | CAAACAAAAATCAAAGGATA+AGG | - | chr4.1:16042616-16042635 | None:intergenic | 25.0% |
| ! | CAATAGCATAAAAAATCATC+TGG | - | chr4.1:16042239-16042258 | None:intergenic | 25.0% |
| ! | CCTATTCAAGGTAAAAAAAT+TGG | - | chr4.1:16042991-16043010 | None:intergenic | 25.0% |
| ! | GTAATATACTCACATATAGT+TGG | - | chr4.1:16041080-16041099 | None:intergenic | 25.0% |
| ! | GTCATATATGCCATTAATAA+CGG | - | chr4.1:16042335-16042354 | None:intergenic | 25.0% |
| ! | TAAAATAAGATAAAGACCGT+GGG | + | chr4.1:16041771-16041790 | MS.gene34916:intron | 25.0% |
| ! | TATTCTATTAGAACAACAGA+TGG | - | chr4.1:16042958-16042977 | None:intergenic | 25.0% |
| ! | TCTATAATGAAAGATAGAAC+TGG | + | chr4.1:16041545-16041564 | MS.gene34916:intron | 25.0% |
| ! | TGAGAAATTACAAAACTTGA+AGG | + | chr4.1:16043291-16043310 | MS.gene34916:intron | 25.0% |
| ! | TTTAATACAATCGTGCAATT+TGG | + | chr4.1:16041401-16041420 | MS.gene34916:intron | 25.0% |
| !! | AAAAACAGGTTGAATATCAT+TGG | + | chr4.1:16042051-16042070 | MS.gene34916:intron | 25.0% |
| !! | AGATTTAAATGGTTTGTCAA+TGG | + | chr4.1:16040889-16040908 | MS.gene34916:intron | 25.0% |
| !! | CTATCGGAATAACATTTTAA+AGG | + | chr4.1:16043261-16043280 | MS.gene34916:intron | 25.0% |
| !! | TAGTTACCTGTGATTTTTAA+GGG | + | chr4.1:16041347-16041366 | MS.gene34916:intron | 25.0% |
| !! | TTAGTTACCTGTGATTTTTA+AGG | + | chr4.1:16041346-16041365 | MS.gene34916:intron | 25.0% |
| !!! | AAAATTCCTGTTTTTATGGA+TGG | + | chr4.1:16043031-16043050 | MS.gene34916:CDS | 25.0% |
| !!! | ATGTTTTTGTTTCTCCAAAT+TGG | - | chr4.1:16041608-16041627 | None:intergenic | 25.0% |
| !!! | CCAATTTTTTTACCTTGAAT+AGG | + | chr4.1:16042988-16043007 | MS.gene34916:intron | 25.0% |
| !!! | GTTCATTTGTGTTTTGTTAA+AGG | + | chr4.1:16043177-16043196 | MS.gene34916:intron | 25.0% |
| !!! | TGGAAAAATTCCTGTTTTTA+TGG | + | chr4.1:16043027-16043046 | MS.gene34916:CDS | 25.0% |
| AAAACATCCGAATTCCAAAT+TGG | + | chr4.1:16041510-16041529 | MS.gene34916:intron | 30.0% | |
| AACATAACTTGGTTTAACTC+AGG | + | chr4.1:16041196-16041215 | MS.gene34916:intron | 30.0% | |
| AGAGTAGAGAATAAATATGG+CGG | - | chr4.1:16040641-16040660 | None:intergenic | 30.0% | |
| ATATACTCACATATAGTTGG+AGG | - | chr4.1:16041077-16041096 | None:intergenic | 30.0% | |
| ATATATGCCATTAATAACGG+AGG | - | chr4.1:16042332-16042351 | None:intergenic | 30.0% | |
| ATGAGTTTGCAAATTAAGGT+TGG | + | chr4.1:16041285-16041304 | MS.gene34916:intron | 30.0% | |
| CAAAATATCAATGCCTATCA+TGG | + | chr4.1:16040414-16040433 | MS.gene34916:CDS | 30.0% | |
| CAACACATAATATACCTTCA+GGG | - | chr4.1:16040471-16040490 | None:intergenic | 30.0% | |
| CGAATGTTAAATGACCTATT+TGG | + | chr4.1:16041713-16041732 | MS.gene34916:intron | 30.0% | |
| CTTGATGAGTAAACATAACT+TGG | + | chr4.1:16041185-16041204 | MS.gene34916:intron | 30.0% | |
| CTTGTAAACAGGATGTAAAA+TGG | + | chr4.1:16042485-16042504 | MS.gene34916:intron | 30.0% | |
| GATGTTTAAAGACAGAAATG+TGG | + | chr4.1:16041933-16041952 | MS.gene34916:intron | 30.0% | |
| TAGTGGTCATAAATCATCTT+CGG | - | chr4.1:16040192-16040211 | None:intergenic | 30.0% | |
| TCATCTCGAATATATCAGAT+TGG | + | chr4.1:16043385-16043404 | MS.gene34916:intron | 30.0% | |
| TGAAAGTTGAAAGACCAATT+TGG | + | chr4.1:16041591-16041610 | MS.gene34916:intron | 30.0% | |
| TTGTTGGCAAATGTAATGTA+AGG | + | chr4.1:16040775-16040794 | MS.gene34916:intron | 30.0% | |
| ! | CATTTTACATCCTGTTTACA+AGG | - | chr4.1:16042487-16042506 | None:intergenic | 30.0% |
| ! | TCTTCTTCTTTTCTCCAAAT+AGG | - | chr4.1:16041730-16041749 | None:intergenic | 30.0% |
| ! | TTGTTTGCCAATTTGGAATT+CGG | - | chr4.1:16041520-16041539 | None:intergenic | 30.0% |
| !! | AATACAGGAAAAATTTGCTG+CGG | - | chr4.1:16043352-16043371 | None:intergenic | 30.0% |
| !! | GATGATTTTGTTTGCCAATT+TGG | - | chr4.1:16041527-16041546 | None:intergenic | 30.0% |
| !!! | CATGATAGGCATTGATATTT+TGG | - | chr4.1:16040416-16040435 | None:intergenic | 30.0% |
| !!! | GACAGATGTTTTTAAAGCAT+TGG | + | chr4.1:16043069-16043088 | MS.gene34916:CDS | 30.0% |
| AAAGGACCCTTAAAAATCAC+AGG | - | chr4.1:16041356-16041375 | None:intergenic | 35.0% | |
| AAATGTTCTTTCGTTCAACG+AGG | - | chr4.1:16041164-16041183 | None:intergenic | 35.0% | |
| AACGCACTAAGTTAGATTCA+TGG | - | chr4.1:16040925-16040944 | None:intergenic | 35.0% | |
| AATCGTGCAATTTGGACTAT+TGG | + | chr4.1:16041409-16041428 | MS.gene34916:intron | 35.0% | |
| ACCTAGCTACATAATTAGCA+TGG | - | chr4.1:16042683-16042702 | None:intergenic | 35.0% | |
| ACTAGAGTCTTTATTCTGCA+AGG | - | chr4.1:16042305-16042324 | None:intergenic | 35.0% | |
| AGGTTAGAATTCAAGTGAAG+TGG | + | chr4.1:16040795-16040814 | MS.gene34916:intron | 35.0% | |
| AGTCAAAACTACTACTTGTG+TGG | - | chr4.1:16041847-16041866 | None:intergenic | 35.0% | |
| ATTAGCATGGAATCAGATTG+TGG | - | chr4.1:16042670-16042689 | None:intergenic | 35.0% | |
| ATTGAAGAACTATGAAGGCA+TGG | + | chr4.1:16042175-16042194 | MS.gene34916:CDS | 35.0% | |
| ATTTATGACCACTATGCATC+CGG | + | chr4.1:16040198-16040217 | MS.gene34916:CDS | 35.0% | |
| CAATCATGCAATTCTTATGC+AGG | + | chr4.1:16040560-16040579 | MS.gene34916:intron | 35.0% | |
| CTATGTCTCTGCAACTATTA+TGG | + | chr4.1:16042764-16042783 | MS.gene34916:CDS | 35.0% | |
| CTGCATAAGAATTGCATGAT+TGG | - | chr4.1:16040562-16040581 | None:intergenic | 35.0% | |
| CTTACGTCAATAAGAATTCG+TGG | - | chr4.1:16040361-16040380 | None:intergenic | 35.0% | |
| CTTATGAAAATGAATCTCCC+AGG | - | chr4.1:16040979-16040998 | None:intergenic | 35.0% | |
| GAATCCTTGAGAATGCATTT+CGG | - | chr4.1:16040254-16040273 | None:intergenic | 35.0% | |
| GAGTTATGTCCTTAAGTGAA+CGG | - | chr4.1:16043516-16043535 | None:intergenic | 35.0% | |
| GATTTGACGACAACTGTATT+CGG | + | chr4.1:16040388-16040407 | MS.gene34916:CDS | 35.0% | |
| GCAACACATAATATACCTTC+AGG | - | chr4.1:16040472-16040491 | None:intergenic | 35.0% | |
| GGAATCATTGTTTCCAATCA+TGG | + | chr4.1:16042726-16042745 | MS.gene34916:CDS | 35.0% | |
| GGTTAGAATTCAAGTGAAGT+GGG | + | chr4.1:16040796-16040815 | MS.gene34916:intron | 35.0% | |
| GTGAGATTGAAGAACTATGA+AGG | + | chr4.1:16042170-16042189 | MS.gene34916:CDS | 35.0% | |
| TACATTCAATGTCAGGTACT+AGG | - | chr4.1:16042439-16042458 | None:intergenic | 35.0% | |
| TAGTTCTTCAATCTCACGTA+TGG | - | chr4.1:16042167-16042186 | None:intergenic | 35.0% | |
| TCATAGCAAACCTTGTAAAC+AGG | + | chr4.1:16042474-16042493 | MS.gene34916:intron | 35.0% | |
| TCATTGCCAATCATACTCAA+GGG | + | chr4.1:16042523-16042542 | MS.gene34916:CDS | 35.0% | |
| TCCATGCTAATTATGTAGCT+AGG | + | chr4.1:16042679-16042698 | MS.gene34916:intron | 35.0% | |
| TGAAAATGGAGTAGTGTATG+AGG | + | chr4.1:16040819-16040838 | MS.gene34916:intron | 35.0% | |
| TGACTTCTACATTCAATGTC+AGG | - | chr4.1:16042446-16042465 | None:intergenic | 35.0% | |
| TGATGAGCTTGAAATAACCA+TGG | + | chr4.1:16043477-16043496 | MS.gene34916:CDS | 35.0% | |
| ! | CTGTTTTCAGCAAACATACA+AGG | - | chr4.1:16040331-16040350 | None:intergenic | 35.0% |
| ! | CTTTAAAAACATCTGTCCCA+CGG | - | chr4.1:16043066-16043085 | None:intergenic | 35.0% |
| ! | TGTTTGCTGAAAACAGATTC+AGG | + | chr4.1:16040335-16040354 | MS.gene34916:intron | 35.0% |
| ! | TTGAAGAACTATGAAGGCAT+GGG | + | chr4.1:16042176-16042195 | MS.gene34916:CDS | 35.0% |
| !! | AACTATTATGGCTTTGGAAG+AGG | + | chr4.1:16042776-16042795 | MS.gene34916:CDS | 35.0% |
| !!! | ATTCCTGTTTTTATGGATGG+TGG | + | chr4.1:16043034-16043053 | MS.gene34916:CDS | 35.0% |
| !!! | GTTTTTAAAGCATTGGCTCT+TGG | + | chr4.1:16043076-16043095 | MS.gene34916:CDS | 35.0% |
| AAGTGTGATTCATTGACAGC+AGG | - | chr4.1:16041382-16041401 | None:intergenic | 40.0% | |
| AATAAGATAAAGACCGTGGG+AGG | + | chr4.1:16041774-16041793 | MS.gene34916:intron | 40.0% | |
| AATTCACCAAAGTCGGAATG+TGG | - | chr4.1:16041451-16041470 | None:intergenic | 40.0% | |
| ACTCCACCATCCATAAAAAC+AGG | - | chr4.1:16043040-16043059 | None:intergenic | 40.0% | |
| AGAACCGAAATGCATTCTCA+AGG | + | chr4.1:16040247-16040266 | MS.gene34916:CDS | 40.0% | |
| AGTACACCCTTGAGTATGAT+TGG | - | chr4.1:16042532-16042551 | None:intergenic | 40.0% | |
| AGTGTGATTCATTGACAGCA+GGG | - | chr4.1:16041381-16041400 | None:intergenic | 40.0% | |
| ATAAGATAAAGACCGTGGGA+GGG | + | chr4.1:16041775-16041794 | MS.gene34916:intron | 40.0% | |
| ATATCAGATTGGAAGACCTG+TGG | + | chr4.1:16043396-16043415 | MS.gene34916:intron | 40.0% | |
| ATTCACCAAAGTCGGAATGT+GGG | - | chr4.1:16041450-16041469 | None:intergenic | 40.0% | |
| CAGCTTGTACAACCTATTCA+AGG | - | chr4.1:16043003-16043022 | None:intergenic | 40.0% | |
| CATAACCTAGGAGCAATTCT+AGG | - | chr4.1:16043568-16043587 | None:intergenic | 40.0% | |
| CGATCATGTTGTAACAGAGT+GGG | + | chr4.1:16043537-16043556 | MS.gene34916:CDS | 40.0% | |
| CTCATTGCCAATCATACTCA+AGG | + | chr4.1:16042522-16042541 | MS.gene34916:CDS | 40.0% | |
| CTCTGCAACTATTATGGCTT+TGG | + | chr4.1:16042770-16042789 | MS.gene34916:CDS | 40.0% | |
| CTTGAGTATGATTGGCAATG+AGG | - | chr4.1:16042524-16042543 | None:intergenic | 40.0% | |
| GAAATAACCATGGCACTATG+TGG | + | chr4.1:16043487-16043506 | MS.gene34916:CDS | 40.0% | |
| GGAACTCAATTCACCAAAGT+CGG | - | chr4.1:16041458-16041477 | None:intergenic | 40.0% | |
| GGGAGGCTAACATAAAAAAC+AGG | + | chr4.1:16042037-16042056 | MS.gene34916:CDS | 40.0% | |
| TATATGACCGATCACTCAAC+TGG | + | chr4.1:16042347-16042366 | MS.gene34916:CDS | 40.0% | |
| TCAAGTGAAGTGGGTGAAAA+TGG | + | chr4.1:16040805-16040824 | MS.gene34916:intron | 40.0% | |
| TGAAGCAATTGCGAAGCAAA+AGG | + | chr4.1:16040164-16040183 | MS.gene34916:CDS | 40.0% | |
| TTCATTGACAGCAGGGAAAA+AGG | - | chr4.1:16041374-16041393 | None:intergenic | 40.0% | |
| TTCTTCAATCTCACGTATGG+CGG | - | chr4.1:16042164-16042183 | None:intergenic | 40.0% | |
| TTGCAGAGACATAGTCAAGT+TGG | - | chr4.1:16042758-16042777 | None:intergenic | 40.0% | |
| ! | AGGAAGCATGTTAGTAAGCA+TGG | - | chr4.1:16040737-16040756 | None:intergenic | 40.0% |
| ! | CTTTGGAAGAGGTCTGATTT+AGG | + | chr4.1:16042787-16042806 | MS.gene34916:intron | 40.0% |
| ! | GTATGGCGGAAATGTAAATC+TGG | - | chr4.1:16042150-16042169 | None:intergenic | 40.0% |
| ! | TATGCCATTAATAACGGAGG+CGG | - | chr4.1:16042329-16042348 | None:intergenic | 40.0% |
| !! | AGCTGAAAATGCTGGTTTCA+AGG | + | chr4.1:16041975-16041994 | MS.gene34916:CDS | 40.0% |
| AAACTGCAGAGTCTGCAGTA+AGG | - | chr4.1:16042008-16042027 | None:intergenic | 45.0% | |
| AACACTAAAAGTAGCCCCTG+TGG | - | chr4.1:16041019-16041038 | None:intergenic | 45.0% | |
| AACCATGAAGATAGCACCAG+AGG | - | chr4.1:16042813-16042832 | None:intergenic | 45.0% | |
| AGACATACGTCTCAGCTCTA+TGG | - | chr4.1:16041479-16041498 | None:intergenic | 45.0% | |
| AGTCCATTCATCTTCTGCTC+CGG | - | chr4.1:16040220-16040239 | None:intergenic | 45.0% | |
| ATGTGGTTGCCGTTCACTTA+AGG | + | chr4.1:16043504-16043523 | MS.gene34916:CDS | 45.0% | |
| GCGATCATGTTGTAACAGAG+TGG | + | chr4.1:16043536-16043555 | MS.gene34916:CDS | 45.0% | |
| GTGAGAAGAGCTGAAAATGC+TGG | + | chr4.1:16041967-16041986 | MS.gene34916:CDS | 45.0% | |
| TAAAAACATCTGTCCCACGG+CGG | - | chr4.1:16043063-16043082 | None:intergenic | 45.0% | |
| TAGGTTGTACAAGCTGCAGA+TGG | + | chr4.1:16043007-16043026 | MS.gene34916:intron | 45.0% | |
| TCACCTTCCAGTTGAGTGAT+CGG | - | chr4.1:16042357-16042376 | None:intergenic | 45.0% | |
| TGTTCTTTCGTTCAACGAGG+AGG | - | chr4.1:16041161-16041180 | None:intergenic | 45.0% | |
| ! | ACCTAGGAGCAATTCTAGGA+CGG | - | chr4.1:16043564-16043583 | None:intergenic | 45.0% |
| ! | ACTGCAGACTCTGCAGTTTT+TGG | + | chr4.1:16042009-16042028 | MS.gene34916:CDS | 45.0% |
| ! | AGCTCTTCTCACAAGTTGAG+TGG | - | chr4.1:16041959-16041978 | None:intergenic | 45.0% |
| ! | ATGCCATTAATAACGGAGGC+GGG | - | chr4.1:16042328-16042347 | None:intergenic | 45.0% |
| ! | GCTAGGTTAGCTATACAAGC+TGG | + | chr4.1:16042696-16042715 | MS.gene34916:intron | 45.0% |
| !! | ACAGGAAAAATTTGCTGCGG+AGG | - | chr4.1:16043349-16043368 | None:intergenic | 45.0% |
| !!! | AGGGGCTACTTTTAGTGTTG+AGG | + | chr4.1:16041020-16041039 | MS.gene34916:CDS | 45.0% |
| !!! | GGCTACTTTTAGTGTTGAGG+AGG | + | chr4.1:16041023-16041042 | MS.gene34916:CDS | 45.0% |
| AAGACCTGTGGTGTACGCAT+TGG | + | chr4.1:16043408-16043427 | MS.gene34916:CDS | 50.0% | |
| AAGTTGGCGAGCACCATGAT+TGG | - | chr4.1:16042742-16042761 | None:intergenic | 50.0% | |
| ACCGTCCTAGAATTGCTCCT+AGG | + | chr4.1:16043560-16043579 | MS.gene34916:CDS | 50.0% | |
| AGAGGTCTGATTTAGGCCTC+TGG | + | chr4.1:16042794-16042813 | MS.gene34916:intron | 50.0% | |
| AGTCCCGCCTCCGTTATTAA+TGG | + | chr4.1:16042322-16042341 | MS.gene34916:CDS | 50.0% | |
| AGTTGGAGGAAACGAATGCC+AGG | - | chr4.1:16041063-16041082 | None:intergenic | 50.0% | |
| CATCCGGAGCAGAAGATGAA+TGG | + | chr4.1:16040214-16040233 | MS.gene34916:CDS | 50.0% | |
| CCTATCATGGTTGCTCCTAC+AGG | + | chr4.1:16040427-16040446 | MS.gene34916:CDS | 50.0% | |
| CCTGTAGGAGCAACCATGAT+AGG | - | chr4.1:16040430-16040449 | None:intergenic | 50.0% | |
| CTACTTGTGTGGCTGTAGCA+AGG | - | chr4.1:16041836-16041855 | None:intergenic | 50.0% | |
| GTTGAGGAGGTTGCTTCAAC+AGG | + | chr4.1:16041036-16041055 | MS.gene34916:CDS | 50.0% | |
| TGACCGATCACTCAACTGGA+AGG | + | chr4.1:16042351-16042370 | MS.gene34916:CDS | 50.0% | |
| TGATGGCAAAAACCCTCCCA+CGG | - | chr4.1:16041790-16041809 | None:intergenic | 50.0% | |
| TGGCGGAAACCATACCATGA+TGG | - | chr4.1:16040624-16040643 | None:intergenic | 50.0% | |
| TGTGACAGACACTAGCCACA+GGG | + | chr4.1:16041001-16041020 | MS.gene34916:intron | 50.0% | |
| ! | ATGAAGGCATGGGTCTTGAC+AGG | + | chr4.1:16042186-16042205 | MS.gene34916:CDS | 50.0% |
| ! | TGAAGGCATGGGTCTTGACA+GGG | + | chr4.1:16042187-16042206 | MS.gene34916:CDS | 50.0% |
| !!! | ACTCTGCAGTTTTTGGTCGC+AGG | + | chr4.1:16042016-16042035 | MS.gene34916:CDS | 50.0% |
| !!! | CTCTGCAGTTTTTGGTCGCA+GGG | + | chr4.1:16042017-16042036 | MS.gene34916:CDS | 50.0% |
| ACGGCAACCACATAGTGCCA+TGG | - | chr4.1:16043497-16043516 | None:intergenic | 55.0% | |
| ATCAGCAGCTGGCACCATCA+TGG | + | chr4.1:16040607-16040626 | MS.gene34916:CDS | 55.0% | |
| CAGCTGGCACCATCATGGTA+TGG | + | chr4.1:16040612-16040631 | MS.gene34916:intron | 55.0% | |
| CATCAGATGGCTCACCCTGA+AGG | + | chr4.1:16040454-16040473 | MS.gene34916:CDS | 55.0% | |
| CTGTGACAGACACTAGCCAC+AGG | + | chr4.1:16041000-16041019 | MS.gene34916:intron | 55.0% | |
| CTTCTGCTCCGGATGCATAG+TGG | - | chr4.1:16040209-16040228 | None:intergenic | 55.0% | |
| GACGACCCACATTCCGACTT+TGG | + | chr4.1:16041442-16041461 | MS.gene34916:intron | 55.0% | |
| GAGCTGAGACGTATGTCTGC+TGG | + | chr4.1:16041481-16041500 | MS.gene34916:intron | 55.0% | |
| GAGGTTGCTTCAACAGGACC+TGG | + | chr4.1:16041042-16041061 | MS.gene34916:CDS | 55.0% | |
| GCAAGCAGTGAATTTCCCCG+TGG | - | chr4.1:16041324-16041343 | None:intergenic | 55.0% | |
| GCTATACAAGCTGGAGCTGC+TGG | + | chr4.1:16042705-16042724 | MS.gene34916:CDS | 55.0% | |
| GTGACAGACACTAGCCACAG+GGG | + | chr4.1:16041002-16041021 | MS.gene34916:intron | 55.0% | |
| TCCTACAGGCCAGCATCAGA+TGG | + | chr4.1:16040441-16040460 | MS.gene34916:CDS | 55.0% | |
| !! | GGCCTCTGGTGCTATCTTCA+TGG | + | chr4.1:16042808-16042827 | MS.gene34916:intron | 55.0% |
| !! | GTGTACGCATTGGCTGCTGA+CGG | + | chr4.1:16043418-16043437 | MS.gene34916:CDS | 55.0% |
| !!! | TGCAGTTTTTGGTCGCAGGG+AGG | + | chr4.1:16042020-16042039 | MS.gene34916:CDS | 55.0% |
| ATTTCCCCGTGGCAGCATGC+AGG | - | chr4.1:16041313-16041332 | None:intergenic | 60.0% | |
| CAGGGTGAGCCATCTGATGC+TGG | - | chr4.1:16040453-16040472 | None:intergenic | 60.0% | |
| GCAGCCAATGCGTACACCAC+AGG | - | chr4.1:16043415-16043434 | None:intergenic | 60.0% | |
| GCTAGAGCAGCATCAGCAGC+TGG | + | chr4.1:16040596-16040615 | MS.gene34916:CDS | 60.0% | |
| TTGGCTCCTGCATGCTGCCA+CGG | + | chr4.1:16041304-16041323 | MS.gene34916:intron | 60.0% | |
| TTGGCTGCTGACGGTGAAGC+TGG | + | chr4.1:16043427-16043446 | MS.gene34916:CDS | 60.0% | |
| ! | GCCATCTGATGCTGGCCTGT+AGG | - | chr4.1:16040445-16040464 | None:intergenic | 60.0% |
| !! | GCATTGGCTCTTGGAGCAGC+TGG | + | chr4.1:16043085-16043104 | MS.gene34916:CDS | 60.0% |
| TGGCTCCTGCATGCTGCCAC+GGG | + | chr4.1:16041305-16041324 | MS.gene34916:intron | 65.0% | |
| !! | ATGGATGGTGGAGTCCGCCG+TGG | + | chr4.1:16043046-16043065 | MS.gene34916:CDS | 65.0% |
| !! | TGGATGGTGGAGTCCGCCGT+GGG | + | chr4.1:16043047-16043066 | MS.gene34916:CDS | 65.0% |
| GGCTCCTGCATGCTGCCACG+GGG | + | chr4.1:16041306-16041325 | MS.gene34916:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 16040135 | 16043588 | 16040135 | ID=MS.gene34916 |
| chr4.1 | mRNA | 16040135 | 16043588 | 16040135 | ID=MS.gene34916.t1;Parent=MS.gene34916 |
| chr4.1 | exon | 16040135 | 16040274 | 16040135 | ID=MS.gene34916.t1.exon1;Parent=MS.gene34916.t1 |
| chr4.1 | CDS | 16040135 | 16040274 | 16040135 | ID=cds.MS.gene34916.t1;Parent=MS.gene34916.t1 |
| chr4.1 | exon | 16040351 | 16040475 | 16040351 | ID=MS.gene34916.t1.exon2;Parent=MS.gene34916.t1 |
| chr4.1 | CDS | 16040351 | 16040475 | 16040351 | ID=cds.MS.gene34916.t1;Parent=MS.gene34916.t1 |
| chr4.1 | exon | 16040582 | 16040628 | 16040582 | ID=MS.gene34916.t1.exon3;Parent=MS.gene34916.t1 |
| chr4.1 | CDS | 16040582 | 16040628 | 16040582 | ID=cds.MS.gene34916.t1;Parent=MS.gene34916.t1 |
| chr4.1 | exon | 16041009 | 16041086 | 16041009 | ID=MS.gene34916.t1.exon4;Parent=MS.gene34916.t1 |
| chr4.1 | CDS | 16041009 | 16041086 | 16041009 | ID=cds.MS.gene34916.t1;Parent=MS.gene34916.t1 |
| chr4.1 | exon | 16041934 | 16042058 | 16041934 | ID=MS.gene34916.t1.exon5;Parent=MS.gene34916.t1 |
| chr4.1 | CDS | 16041934 | 16042058 | 16041934 | ID=cds.MS.gene34916.t1;Parent=MS.gene34916.t1 |
| chr4.1 | exon | 16042151 | 16042208 | 16042151 | ID=MS.gene34916.t1.exon6;Parent=MS.gene34916.t1 |
| chr4.1 | CDS | 16042151 | 16042208 | 16042151 | ID=cds.MS.gene34916.t1;Parent=MS.gene34916.t1 |
| chr4.1 | exon | 16042310 | 16042372 | 16042310 | ID=MS.gene34916.t1.exon7;Parent=MS.gene34916.t1 |
| chr4.1 | CDS | 16042310 | 16042372 | 16042310 | ID=cds.MS.gene34916.t1;Parent=MS.gene34916.t1 |
| chr4.1 | exon | 16042496 | 16042565 | 16042496 | ID=MS.gene34916.t1.exon8;Parent=MS.gene34916.t1 |
| chr4.1 | CDS | 16042496 | 16042565 | 16042496 | ID=cds.MS.gene34916.t1;Parent=MS.gene34916.t1 |
| chr4.1 | exon | 16042697 | 16042797 | 16042697 | ID=MS.gene34916.t1.exon9;Parent=MS.gene34916.t1 |
| chr4.1 | CDS | 16042697 | 16042797 | 16042697 | ID=cds.MS.gene34916.t1;Parent=MS.gene34916.t1 |
| chr4.1 | exon | 16043010 | 16043114 | 16043010 | ID=MS.gene34916.t1.exon10;Parent=MS.gene34916.t1 |
| chr4.1 | CDS | 16043010 | 16043114 | 16043010 | ID=cds.MS.gene34916.t1;Parent=MS.gene34916.t1 |
| chr4.1 | exon | 16043403 | 16043588 | 16043403 | ID=MS.gene34916.t1.exon11;Parent=MS.gene34916.t1 |
| chr4.1 | CDS | 16043403 | 16043588 | 16043403 | ID=cds.MS.gene34916.t1;Parent=MS.gene34916.t1 |
| Gene Sequence |
| Protein sequence |
