Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46645.t1 | XP_003599263.1 | 99.3 | 301 | 2 | 0 | 6 | 306 | 80 | 380 | 2.70E-170 | 607.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46645.t1 | Q9SFB3 | 76.4 | 305 | 72 | 0 | 2 | 306 | 70 | 374 | 8.1e-139 | 494.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46645.t1 | G7IWV1 | 99.3 | 301 | 2 | 0 | 6 | 306 | 80 | 380 | 2.0e-170 | 607.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene46645 | 0.873195 | 1.77E-67 | -1.69E-46 |
| MS.gene049222 | MS.gene46645 | 0.826096 | 3.27E-54 | -1.69E-46 |
| MS.gene049351 | MS.gene46645 | 0.826188 | 3.11E-54 | -1.69E-46 |
| MS.gene049356 | MS.gene46645 | 0.855706 | 5.27E-62 | -1.69E-46 |
| MS.gene049369 | MS.gene46645 | 0.8259 | 3.64E-54 | -1.69E-46 |
| MS.gene049427 | MS.gene46645 | 0.820538 | 6.51E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene46645 | 0.860752 | 1.66E-63 | -1.69E-46 |
| MS.gene049805 | MS.gene46645 | 0.866119 | 3.60E-65 | -1.69E-46 |
| MS.gene050301 | MS.gene46645 | 0.802307 | 5.97E-49 | -1.69E-46 |
| MS.gene050397 | MS.gene46645 | 0.80155 | 8.54E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene46645 | -0.805914 | 1.06E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene46645 | 0.802249 | 6.14E-49 | -1.69E-46 |
| MS.gene050507 | MS.gene46645 | 0.808932 | 2.43E-50 | -1.69E-46 |
| MS.gene050520 | MS.gene46645 | 0.800727 | 1.26E-48 | -1.69E-46 |
| MS.gene050529 | MS.gene46645 | 0.822797 | 1.95E-53 | -1.69E-46 |
| MS.gene050538 | MS.gene46645 | 0.832215 | 1.07E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene46645 | 0.861695 | 8.56E-64 | -1.69E-46 |
| MS.gene050670 | MS.gene46645 | 0.908978 | 9.46E-82 | -1.69E-46 |
| MS.gene050747 | MS.gene46645 | 0.860061 | 2.68E-63 | -1.69E-46 |
| MS.gene050772 | MS.gene46645 | 0.849192 | 3.79E-60 | -1.69E-46 |
| MS.gene05080 | MS.gene46645 | 0.824675 | 7.10E-54 | -1.69E-46 |
| MS.gene050812 | MS.gene46645 | 0.858784 | 6.49E-63 | -1.69E-46 |
| MS.gene05081 | MS.gene46645 | 0.805018 | 1.63E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene46645 | 0.843753 | 1.15E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene46645 | 0.898918 | 3.31E-77 | -1.69E-46 |
| MS.gene051387 | MS.gene46645 | 0.863255 | 2.84E-64 | -1.69E-46 |
| MS.gene051525 | MS.gene46645 | 0.834984 | 2.18E-56 | -1.69E-46 |
| MS.gene051582 | MS.gene46645 | 0.805495 | 1.30E-49 | -1.69E-46 |
| MS.gene051605 | MS.gene46645 | 0.803713 | 3.06E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene46645 | 0.891879 | 2.65E-74 | -1.69E-46 |
| MS.gene051734 | MS.gene46645 | 0.807193 | 5.70E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene46645 | 0.848161 | 7.31E-60 | -1.69E-46 |
| MS.gene051858 | MS.gene46645 | 0.816088 | 6.62E-52 | -1.69E-46 |
| MS.gene051874 | MS.gene46645 | 0.814831 | 1.26E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene46645 | 0.803695 | 3.08E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene46645 | 0.864966 | 8.31E-65 | -1.69E-46 |
| MS.gene052253 | MS.gene46645 | 0.83717 | 6.09E-57 | -1.69E-46 |
| MS.gene052310 | MS.gene46645 | 0.846932 | 1.59E-59 | -1.69E-46 |
| MS.gene052322 | MS.gene46645 | 0.828257 | 9.94E-55 | -1.69E-46 |
| MS.gene052340 | MS.gene46645 | 0.818397 | 2.00E-52 | -1.69E-46 |
| MS.gene052346 | MS.gene46645 | 0.831258 | 1.85E-55 | -1.69E-46 |
| MS.gene05240 | MS.gene46645 | -0.806481 | 8.05E-50 | -1.69E-46 |
| MS.gene052414 | MS.gene46645 | 0.839378 | 1.64E-57 | -1.69E-46 |
| MS.gene052421 | MS.gene46645 | 0.865479 | 5.73E-65 | -1.69E-46 |
| MS.gene052481 | MS.gene46645 | 0.84333 | 1.50E-58 | -1.69E-46 |
| MS.gene052484 | MS.gene46645 | 0.829599 | 4.70E-55 | -1.69E-46 |
| MS.gene052485 | MS.gene46645 | 0.861334 | 1.10E-63 | -1.69E-46 |
| MS.gene052501 | MS.gene46645 | 0.851419 | 8.98E-61 | -1.69E-46 |
| MS.gene052503 | MS.gene46645 | 0.807056 | 6.09E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene46645 | 0.844468 | 7.42E-59 | -1.69E-46 |
| MS.gene052615 | MS.gene46645 | 0.826584 | 2.50E-54 | -1.69E-46 |
| MS.gene052870 | MS.gene46645 | 0.804 | 2.66E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene46645 | 0.800378 | 1.48E-48 | -1.69E-46 |
| MS.gene052982 | MS.gene46645 | 0.863449 | 2.47E-64 | -1.69E-46 |
| MS.gene053103 | MS.gene46645 | 0.825596 | 4.30E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene46645 | 0.823791 | 1.14E-53 | -1.69E-46 |
| MS.gene053107 | MS.gene46645 | 0.816652 | 4.95E-52 | -1.69E-46 |
| MS.gene053169 | MS.gene46645 | 0.804845 | 1.78E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene46645 | 0.840763 | 7.15E-58 | -1.69E-46 |
| MS.gene053209 | MS.gene46645 | 0.833746 | 4.47E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene46645 | 0.808687 | 2.74E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene46645 | 0.809084 | 2.25E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene46645 | 0.807011 | 6.23E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene46645 | 0.807121 | 5.90E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene46645 | 0.837896 | 3.97E-57 | -1.69E-46 |
| MS.gene053579 | MS.gene46645 | 0.823347 | 1.45E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene46645 | 0.803494 | 3.39E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene46645 | 0.839403 | 1.62E-57 | -1.69E-46 |
| MS.gene053824 | MS.gene46645 | 0.823927 | 1.06E-53 | -1.69E-46 |
| MS.gene053912 | MS.gene46645 | 0.800551 | 1.37E-48 | -1.69E-46 |
| MS.gene053916 | MS.gene46645 | 0.836617 | 8.42E-57 | -1.69E-46 |
| MS.gene054123 | MS.gene46645 | 0.826523 | 2.59E-54 | -1.69E-46 |
| MS.gene054408 | MS.gene46645 | 0.821056 | 4.94E-53 | -1.69E-46 |
| MS.gene054556 | MS.gene46645 | 0.807789 | 4.26E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene46645 | 0.815846 | 7.50E-52 | -1.69E-46 |
| MS.gene054884 | MS.gene46645 | -0.801705 | 7.94E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene46645 | 0.8266 | 2.48E-54 | -1.69E-46 |
| MS.gene05494 | MS.gene46645 | 0.824419 | 8.15E-54 | -1.69E-46 |
| MS.gene054955 | MS.gene46645 | 0.80285 | 4.61E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene46645 | 0.872042 | 4.31E-67 | -1.69E-46 |
| MS.gene055116 | MS.gene46645 | 0.859969 | 2.86E-63 | -1.69E-46 |
| MS.gene055206 | MS.gene46645 | 0.829942 | 3.88E-55 | -1.69E-46 |
| MS.gene055224 | MS.gene46645 | 0.835886 | 1.29E-56 | -1.69E-46 |
| MS.gene055289 | MS.gene46645 | 0.814026 | 1.90E-51 | -1.69E-46 |
| MS.gene055369 | MS.gene46645 | 0.816957 | 4.23E-52 | -1.69E-46 |
| MS.gene055412 | MS.gene46645 | 0.819725 | 9.99E-53 | -1.69E-46 |
| MS.gene055539 | MS.gene46645 | 0.870951 | 9.90E-67 | -1.69E-46 |
| MS.gene05553 | MS.gene46645 | 0.803529 | 3.34E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene46645 | 0.829341 | 5.43E-55 | -1.69E-46 |
| MS.gene055722 | MS.gene46645 | 0.827468 | 1.54E-54 | -1.69E-46 |
| MS.gene055741 | MS.gene46645 | 0.855508 | 6.02E-62 | -1.69E-46 |
| MS.gene055744 | MS.gene46645 | 0.858129 | 1.02E-62 | -1.69E-46 |
| MS.gene055909 | MS.gene46645 | 0.815257 | 1.01E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene46645 | 0.816643 | 4.98E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene46645 | 0.824184 | 9.26E-54 | -1.69E-46 |
| MS.gene055941 | MS.gene46645 | 0.829504 | 4.96E-55 | -1.69E-46 |
| MS.gene05602 | MS.gene46645 | 0.843787 | 1.13E-58 | -1.69E-46 |
| MS.gene056407 | MS.gene46645 | 0.855773 | 5.04E-62 | -1.69E-46 |
| MS.gene056410 | MS.gene46645 | 0.803055 | 4.18E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene46645 | 0.801106 | 1.05E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene46645 | 0.853419 | 2.42E-61 | -1.69E-46 |
| MS.gene056609 | MS.gene46645 | 0.80526 | 1.45E-49 | -1.69E-46 |
| MS.gene05664 | MS.gene46645 | 0.837577 | 4.79E-57 | -1.69E-46 |
| MS.gene056659 | MS.gene46645 | 0.84462 | 6.75E-59 | -1.69E-46 |
| MS.gene05666 | MS.gene46645 | 0.837547 | 4.88E-57 | -1.69E-46 |
| MS.gene056796 | MS.gene46645 | 0.840484 | 8.46E-58 | -1.69E-46 |
| MS.gene056897 | MS.gene46645 | 0.816717 | 4.79E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene46645 | 0.809065 | 2.27E-50 | -1.69E-46 |
| MS.gene057019 | MS.gene46645 | 0.803531 | 3.34E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene46645 | 0.832463 | 9.32E-56 | -1.69E-46 |
| MS.gene057124 | MS.gene46645 | 0.879815 | 9.16E-70 | -1.69E-46 |
| MS.gene057129 | MS.gene46645 | 0.811744 | 6.01E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene46645 | 0.830798 | 2.40E-55 | -1.69E-46 |
| MS.gene057331 | MS.gene46645 | 0.825614 | 4.26E-54 | -1.69E-46 |
| MS.gene057332 | MS.gene46645 | 0.804948 | 1.69E-49 | -1.69E-46 |
| MS.gene05735 | MS.gene46645 | 0.822403 | 2.41E-53 | -1.69E-46 |
| MS.gene057396 | MS.gene46645 | 0.811647 | 6.31E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene46645 | 0.830871 | 2.30E-55 | -1.69E-46 |
| MS.gene057658 | MS.gene46645 | 0.82912 | 6.15E-55 | -1.69E-46 |
| MS.gene057734 | MS.gene46645 | 0.837762 | 4.29E-57 | -1.69E-46 |
| MS.gene057749 | MS.gene46645 | 0.818241 | 2.17E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene46645 | 0.83548 | 1.64E-56 | -1.69E-46 |
| MS.gene057856 | MS.gene46645 | 0.810543 | 1.09E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene46645 | 0.800744 | 1.25E-48 | -1.69E-46 |
| MS.gene058006 | MS.gene46645 | 0.832646 | 8.40E-56 | -1.69E-46 |
| MS.gene058007 | MS.gene46645 | 0.831594 | 1.53E-55 | -1.69E-46 |
| MS.gene058019 | MS.gene46645 | 0.836312 | 1.01E-56 | -1.69E-46 |
| MS.gene058082 | MS.gene46645 | 0.818539 | 1.86E-52 | -1.69E-46 |
| MS.gene058090 | MS.gene46645 | 0.817201 | 3.73E-52 | -1.69E-46 |
| MS.gene058120 | MS.gene46645 | 0.835589 | 1.54E-56 | -1.69E-46 |
| MS.gene058130 | MS.gene46645 | 0.827157 | 1.83E-54 | -1.69E-46 |
| MS.gene058233 | MS.gene46645 | 0.801949 | 7.07E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene46645 | 0.86385 | 1.85E-64 | -1.69E-46 |
| MS.gene058323 | MS.gene46645 | 0.820676 | 6.05E-53 | -1.69E-46 |
| MS.gene058365 | MS.gene46645 | 0.837168 | 6.09E-57 | -1.69E-46 |
| MS.gene058376 | MS.gene46645 | 0.833552 | 4.99E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene46645 | 0.804913 | 1.72E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene46645 | 0.826818 | 2.20E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene46645 | 0.841228 | 5.40E-58 | -1.69E-46 |
| MS.gene058700 | MS.gene46645 | 0.859287 | 4.59E-63 | -1.69E-46 |
| MS.gene058723 | MS.gene46645 | 0.803979 | 2.69E-49 | -1.69E-46 |
| MS.gene058748 | MS.gene46645 | 0.820379 | 7.08E-53 | -1.69E-46 |
| MS.gene058787 | MS.gene46645 | 0.822192 | 2.70E-53 | -1.69E-46 |
| MS.gene058788 | MS.gene46645 | 0.814921 | 1.20E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene46645 | 0.847269 | 1.29E-59 | -1.69E-46 |
| MS.gene058928 | MS.gene46645 | 0.814029 | 1.90E-51 | -1.69E-46 |
| MS.gene058948 | MS.gene46645 | 0.86942 | 3.14E-66 | -1.69E-46 |
| MS.gene058993 | MS.gene46645 | 0.801818 | 7.52E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene46645 | 0.817752 | 2.80E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene46645 | 0.800205 | 1.61E-48 | -1.69E-46 |
| MS.gene059141 | MS.gene46645 | 0.803197 | 3.91E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene46645 | 0.858857 | 6.18E-63 | -1.69E-46 |
| MS.gene059366 | MS.gene46645 | 0.830691 | 2.55E-55 | -1.69E-46 |
| MS.gene059368 | MS.gene46645 | 0.809405 | 1.92E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene46645 | 0.837035 | 6.59E-57 | -1.69E-46 |
| MS.gene059536 | MS.gene46645 | 0.815093 | 1.10E-51 | -1.69E-46 |
| MS.gene05959 | MS.gene46645 | 0.812605 | 3.90E-51 | -1.69E-46 |
| MS.gene059667 | MS.gene46645 | 0.806775 | 6.98E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene46645 | 0.845868 | 3.11E-59 | -1.69E-46 |
| MS.gene059688 | MS.gene46645 | 0.87155 | 6.28E-67 | -1.69E-46 |
| MS.gene059692 | MS.gene46645 | 0.859465 | 4.06E-63 | -1.69E-46 |
| MS.gene059695 | MS.gene46645 | 0.864344 | 1.30E-64 | -1.69E-46 |
| MS.gene059718 | MS.gene46645 | 0.826692 | 2.36E-54 | -1.69E-46 |
| MS.gene059902 | MS.gene46645 | 0.812194 | 4.79E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene46645 | 0.841853 | 3.69E-58 | -1.69E-46 |
| MS.gene060193 | MS.gene46645 | 0.812899 | 3.36E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene46645 | 0.807619 | 4.63E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene46645 | 0.860852 | 1.55E-63 | -1.69E-46 |
| MS.gene060804 | MS.gene46645 | 0.850022 | 2.22E-60 | -1.69E-46 |
| MS.gene060818 | MS.gene46645 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene060835 | MS.gene46645 | 0.838827 | 2.28E-57 | -1.69E-46 |
| MS.gene060837 | MS.gene46645 | 0.847309 | 1.25E-59 | -1.69E-46 |
| MS.gene06090 | MS.gene46645 | 0.819416 | 1.17E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene46645 | 0.859442 | 4.12E-63 | -1.69E-46 |
| MS.gene061041 | MS.gene46645 | 0.84183 | 3.74E-58 | -1.69E-46 |
| MS.gene061051 | MS.gene46645 | -0.813966 | 1.96E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene46645 | 0.810292 | 1.24E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene46645 | 0.862762 | 4.03E-64 | -1.69E-46 |
| MS.gene061200 | MS.gene46645 | 0.824774 | 6.73E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46645.t1 | MTR_3g030950 | 99.344 | 305 | 2 | 0 | 2 | 306 | 76 | 380 | 0.0 | 622 |
| MS.gene46645.t1 | MTR_3g030975 | 99.528 | 212 | 1 | 0 | 95 | 306 | 1 | 212 | 2.58e-153 | 427 |
| MS.gene46645.t1 | MTR_8g104810 | 89.062 | 64 | 7 | 0 | 28 | 91 | 43 | 106 | 2.84e-35 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46645.t1 | AT3G08010 | 76.393 | 305 | 72 | 0 | 2 | 306 | 70 | 374 | 1.71e-178 | 498 |
Find 69 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAGATTGTATTGGCTTC+TGG | 0.208718 | 3.3:+23534278 | MS.gene46645:CDS |
| CTAAAGAAGCGAATGTTTCT+AGG | 0.224379 | 3.3:-23529743 | None:intergenic |
| ATACTATTAATAACATTATT+AGG | 0.258304 | 3.3:-23529668 | None:intergenic |
| AATCATACTCACCCGTTTAC+TGG | 0.258872 | 3.3:-23531328 | None:intergenic |
| GAAAGATTTGGATATGGTTC+TGG | 0.270200 | 3.3:+23533288 | MS.gene46645:CDS |
| CTAGAAACATTCGCTTCTTT+AGG | 0.283849 | 3.3:+23529744 | MS.gene46645:CDS |
| TGGGCTAGATCTTGATTTAT+TGG | 0.288153 | 3.3:+23533308 | MS.gene46645:CDS |
| GGGCTAGATCTTGATTTATT+GGG | 0.315434 | 3.3:+23533309 | MS.gene46645:CDS |
| ATACTGTCAGGATCAGCTTC+TGG | 0.321460 | 3.3:-23529530 | None:intergenic |
| TGTTGCTATTTGTGATGAAT+TGG | 0.332766 | 3.3:+23529709 | MS.gene46645:CDS |
| CTTCAGAATCTAACTCATCT+TGG | 0.371396 | 3.3:-23534261 | None:intergenic |
| ATGCTAGAGGAAAGAAACTT+TGG | 0.380045 | 3.3:+23529594 | MS.gene46645:CDS |
| TCTCGTGCTAAAATATTATC+AGG | 0.382198 | 3.3:+23533381 | MS.gene46645:CDS |
| TCAGAGGAAAGATTTGGATA+TGG | 0.386627 | 3.3:+23533282 | MS.gene46645:CDS |
| GAAGCAGCTAAGAAAGCTTC+TGG | 0.387670 | 3.3:+23534217 | MS.gene46645:CDS |
| TTTCCTCTAGCATCAAGAAT+TGG | 0.395207 | 3.3:-23529584 | None:intergenic |
| TAAGAGCTCTTCCCAGTAAA+CGG | 0.396897 | 3.3:+23531316 | MS.gene46645:CDS |
| GTCGCAAAAGGATTGTCTAA+TGG | 0.411685 | 3.3:-23532888 | None:intergenic |
| TCAGCCTCAGAGGAAAGATT+TGG | 0.414247 | 3.3:+23533276 | MS.gene46645:CDS |
| TTAGATTCTGAAGATTGTAT+TGG | 0.414494 | 3.3:+23534271 | MS.gene46645:CDS |
| GAAGATGCAACAGCCAATCC+TGG | 0.417168 | 3.3:-23533360 | None:intergenic |
| AGATAACATGTTTCAGCAGT+TGG | 0.424045 | 3.3:-23529503 | None:intergenic |
| AATGATTTGTACGATTATAC+AGG | 0.426901 | 3.3:-23534325 | None:intergenic |
| TACTGTCAGGATCAGCTTCT+GGG | 0.430219 | 3.3:-23529529 | None:intergenic |
| AAAGATTTGGATATGGTTCT+GGG | 0.430953 | 3.3:+23533289 | MS.gene46645:CDS |
| GAAACATCCTGGATTTCAAA+AGG | 0.431524 | 3.3:+23532848 | MS.gene46645:CDS |
| AACTAAAGAAGCTGAAGCTT+GGG | 0.435084 | 3.3:+23534195 | MS.gene46645:CDS |
| TCTGGAAGTTTCGTCGCAAA+AGG | 0.443913 | 3.3:-23532900 | None:intergenic |
| GATAACATGTTTCAGCAGTT+GGG | 0.444982 | 3.3:-23529502 | None:intergenic |
| AATTATTACAAAAGCATGTA+AGG | 0.453031 | 3.3:+23531284 | MS.gene46645:CDS |
| GCGTGCAGTGTCCGTTTCAA+TGG | 0.453511 | 3.3:-23534101 | None:intergenic |
| CAACTAAAGAAGCTGAAGCT+TGG | 0.463491 | 3.3:+23534194 | MS.gene46645:CDS |
| ATCCTGACAGTATATTAAGC+TGG | 0.466941 | 3.3:+23529540 | MS.gene46645:CDS |
| CTGATGACTTTACCTGAGTA+AGG | 0.468010 | 3.3:-23532960 | None:intergenic |
| GTCTAATGGCAAAAGAGGCT+TGG | 0.468563 | 3.3:-23532874 | None:intergenic |
| CTAACTCATCTTGGATTGCT+AGG | 0.473543 | 3.3:-23534252 | None:intergenic |
| TGCTAGAGGAAAGAAACTTT+GGG | 0.479591 | 3.3:+23529595 | MS.gene46645:CDS |
| AAGAGCTCTTCCCAGTAAAC+GGG | 0.480174 | 3.3:+23531317 | MS.gene46645:CDS |
| AACAGCCAATCCTGGGATCA+AGG | 0.490579 | 3.3:-23533352 | None:intergenic |
| TCCCAGCTTAATATACTGTC+AGG | 0.490831 | 3.3:-23529542 | None:intergenic |
| ACTGTATACACGAAACATCC+TGG | 0.491501 | 3.3:+23532837 | MS.gene46645:CDS |
| AAATCTTTCCTCTGAGGCTG+AGG | 0.496486 | 3.3:-23533274 | None:intergenic |
| GGAGCTCTGTTCCATTGAAA+CGG | 0.498099 | 3.3:+23534090 | MS.gene46645:CDS |
| AAATTCCAACTGAAAGAGTC+AGG | 0.502775 | 3.3:-23534129 | None:intergenic |
| CAGTATATTAAGCTGGGAGT+TGG | 0.503857 | 3.3:+23529547 | MS.gene46645:CDS |
| ATCATACTCACCCGTTTACT+GGG | 0.505577 | 3.3:-23531327 | None:intergenic |
| AGCTTCAGCTTCTTTAGTTG+AGG | 0.517831 | 3.3:-23534191 | None:intergenic |
| ACAAAAGCATGTAAGGAGCT+TGG | 0.520013 | 3.3:+23531291 | MS.gene46645:CDS |
| TTTGTTCAGTTACCTTACTC+AGG | 0.530705 | 3.3:+23532948 | MS.gene46645:CDS |
| GAAGACCTTGATCCCAGGAT+TGG | 0.531133 | 3.3:+23533347 | MS.gene46645:CDS |
| AGACCAATTCTTGATGCTAG+AGG | 0.533980 | 3.3:+23529581 | MS.gene46645:CDS |
| AAGCGAATGTTTCTAGGCAC+AGG | 0.539819 | 3.3:-23529737 | None:intergenic |
| GGATTGTCTAATGGCAAAAG+AGG | 0.539986 | 3.3:-23532879 | None:intergenic |
| TCCTGACAGTATATTAAGCT+GGG | 0.544833 | 3.3:+23529541 | MS.gene46645:CDS |
| TACGATTATACAGGTGGAGG+TGG | 0.552896 | 3.3:-23534316 | None:intergenic |
| AAACATCCTGGATTTCAAAA+GGG | 0.557929 | 3.3:+23532849 | MS.gene46645:CDS |
| GACGAGAAGACCTTGATCCC+AGG | 0.562521 | 3.3:+23533342 | MS.gene46645:CDS |
| TCAGCTTCTTTAGTTGAGGT+AGG | 0.564251 | 3.3:-23534187 | None:intergenic |
| TATTAATAGTATCACTCTCA+AGG | 0.566789 | 3.3:+23529679 | MS.gene46645:CDS |
| TATTATAGCGGTTCGAGAGG+AGG | 0.570894 | 3.3:+23533251 | MS.gene46645:intron |
| AAGATGCAACAGCCAATCCT+GGG | 0.585967 | 3.3:-23533359 | None:intergenic |
| TTGTACGATTATACAGGTGG+AGG | 0.590003 | 3.3:-23534319 | None:intergenic |
| AGAGGAGGCCTCAGCCTCAG+AGG | 0.611276 | 3.3:+23533266 | MS.gene46645:CDS |
| GATTTGTACGATTATACAGG+TGG | 0.612404 | 3.3:-23534322 | None:intergenic |
| TTTCAGTTGGAATTTCGACT+CGG | 0.613028 | 3.3:+23534137 | MS.gene46645:CDS |
| TCTAACCTGACTCTTTCAGT+TGG | 0.624714 | 3.3:+23534124 | MS.gene46645:CDS |
| CTATATTATAGCGGTTCGAG+AGG | 0.629632 | 3.3:+23533248 | MS.gene46645:intron |
| ATATCCAAATCTTTCCTCTG+AGG | 0.661900 | 3.3:-23533280 | None:intergenic |
| GCAGCTAAGAAAGCTTCTGG+AGG | 0.687768 | 3.3:+23534220 | MS.gene46645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAGAAAAGAAAAAAA+AGG | + | chr3.3:23532054-23532073 | MS.gene46645:intron | 10.0% |
| !! | ATACTATTAATAACATTATT+AGG | - | chr3.3:23529671-23529690 | None:intergenic | 10.0% |
| !!! | ATTTTCAATAATTTTACTTT+GGG | + | chr3.3:23531545-23531564 | MS.gene46645:intron | 10.0% |
| !! | ATAAATATTGAATGAGTTAA+TGG | + | chr3.3:23531834-23531853 | MS.gene46645:intron | 15.0% |
| !! | TATTATATATTGTTAGAGTA+AGG | + | chr3.3:23531212-23531231 | MS.gene46645:intron | 15.0% |
| !!! | AATTTTGTGAATTTTCAAAA+AGG | + | chr3.3:23531663-23531682 | MS.gene46645:intron | 15.0% |
| !!! | CATTTTCAATAATTTTACTT+TGG | + | chr3.3:23531544-23531563 | MS.gene46645:intron | 15.0% |
| !!! | TAAAAGTCATTTTTAAAACA+AGG | - | chr3.3:23533536-23533555 | None:intergenic | 15.0% |
| !!! | TCAACAATAATTTTTTGTTT+TGG | + | chr3.3:23532268-23532287 | MS.gene46645:intron | 15.0% |
| !! | AAACTAAACACAGAAAATAA+AGG | - | chr3.3:23531045-23531064 | None:intergenic | 20.0% |
| !! | AAAGAAAAGAAAAAAAAGGT+CGG | + | chr3.3:23532058-23532077 | MS.gene46645:intron | 20.0% |
| !! | AAATGTTCTTAGAAAGTAAA+TGG | - | chr3.3:23531529-23531548 | None:intergenic | 20.0% |
| !! | AAGATGAAAAAAGAAACAAA+TGG | - | chr3.3:23532495-23532514 | None:intergenic | 20.0% |
| !! | AATGTTCTTAGAAAGTAAAT+GGG | - | chr3.3:23531528-23531547 | None:intergenic | 20.0% |
| !! | ACAAATTATAAACATGTCAT+AGG | - | chr3.3:23533836-23533855 | None:intergenic | 20.0% |
| !! | ACACTTTATAAACTCTATTT+AGG | - | chr3.3:23530920-23530939 | None:intergenic | 20.0% |
| !! | ACTATGTCATATATCTTTAT+TGG | + | chr3.3:23530857-23530876 | MS.gene46645:intron | 20.0% |
| !! | AGATGAAAAAAGAAACAAAT+GGG | - | chr3.3:23532494-23532513 | None:intergenic | 20.0% |
| !! | ATATGGTATAACATGAAAAA+TGG | - | chr3.3:23531911-23531930 | None:intergenic | 20.0% |
| !! | CTACTTAATTGTTTATGTTA+CGG | + | chr3.3:23529784-23529803 | MS.gene46645:intron | 20.0% |
| !! | TAAAGTGATTAAACTGAATA+TGG | - | chr3.3:23532027-23532046 | None:intergenic | 20.0% |
| !! | TGAATTATGAAATGTTCATA+AGG | + | chr3.3:23529897-23529916 | MS.gene46645:intron | 20.0% |
| !! | TTAAGTTAGCATACAAAATT+TGG | + | chr3.3:23532461-23532480 | MS.gene46645:intron | 20.0% |
| !! | TTATGTTTGGTACATATTAA+AGG | - | chr3.3:23531176-23531195 | None:intergenic | 20.0% |
| !!! | AATTATTACAAAAGCATGTA+AGG | + | chr3.3:23531284-23531303 | MS.gene46645:CDS | 20.0% |
| !!! | ATACTTTGAGAATTAAATTG+AGG | - | chr3.3:23530532-23530551 | None:intergenic | 20.0% |
| !!! | TACTTTGAGAATTAAATTGA+GGG | - | chr3.3:23530531-23530550 | None:intergenic | 20.0% |
| !!! | TTTAAAGCGTATTTTCAAAA+CGG | + | chr3.3:23531697-23531716 | MS.gene46645:intron | 20.0% |
| ! | AAAAATTATTGTTGAGCGTT+TGG | - | chr3.3:23532263-23532282 | None:intergenic | 25.0% |
| ! | AAATTTGTGAACAACTGAAA+GGG | + | chr3.3:23532119-23532138 | MS.gene46645:intron | 25.0% |
| ! | AATATGTACCAAACATAACA+TGG | + | chr3.3:23531178-23531197 | MS.gene46645:intron | 25.0% |
| ! | AATGACTTCTTATACTTAAG+CGG | + | chr3.3:23530690-23530709 | MS.gene46645:intron | 25.0% |
| ! | ATAAAAAAAACATTATGCCG+TGG | + | chr3.3:23530404-23530423 | MS.gene46645:intron | 25.0% |
| ! | ATATACGTTAGAGACTAAAT+TGG | + | chr3.3:23530728-23530747 | MS.gene46645:intron | 25.0% |
| ! | ATTCCACAAATAAGTACATA+TGG | - | chr3.3:23531765-23531784 | None:intergenic | 25.0% |
| ! | ATTTCTTTCATAAACTGTCT+TGG | - | chr3.3:23530168-23530187 | None:intergenic | 25.0% |
| ! | CACTTTCATAAGTTAATTAG+AGG | - | chr3.3:23531805-23531824 | None:intergenic | 25.0% |
| ! | CTCTAATTAACTTATGAAAG+TGG | + | chr3.3:23531803-23531822 | MS.gene46645:intron | 25.0% |
| ! | GATGAAAAAAGAAACAAATG+GGG | - | chr3.3:23532493-23532512 | None:intergenic | 25.0% |
| ! | TAACTTATGCATAAACACTT+CGG | + | chr3.3:23533788-23533807 | MS.gene46645:intron | 25.0% |
| ! | TAAGGTAATTCTACAATCAA+AGG | - | chr3.3:23533928-23533947 | None:intergenic | 25.0% |
| ! | TAATTAACTTATGAAAGTGG+AGG | + | chr3.3:23531806-23531825 | MS.gene46645:intron | 25.0% |
| ! | TAATTGGCAATAAAACTAAG+TGG | + | chr3.3:23531459-23531478 | MS.gene46645:intron | 25.0% |
| ! | TACTTCAGAAACTAAATTGA+TGG | + | chr3.3:23530760-23530779 | MS.gene46645:intron | 25.0% |
| ! | TATAAATGTTGACAAAAAGC+TGG | + | chr3.3:23533681-23533700 | MS.gene46645:intron | 25.0% |
| ! | TATACATAGCTTACTTTCAA+TGG | + | chr3.3:23533224-23533243 | MS.gene46645:intron | 25.0% |
| ! | TATTAATAGTATCACTCTCA+AGG | + | chr3.3:23529679-23529698 | MS.gene46645:CDS | 25.0% |
| ! | TTCGATAAACTGATTAACTA+TGG | + | chr3.3:23529935-23529954 | MS.gene46645:intron | 25.0% |
| ! | TTTGTCTACAAATTCTATTC+AGG | - | chr3.3:23533715-23533734 | None:intergenic | 25.0% |
| !! | ACATGGTTTTTCATGTATTT+AGG | + | chr3.3:23533013-23533032 | MS.gene46645:intron | 25.0% |
| !! | ACGAGTTTTCATATACTTTA+GGG | + | chr3.3:23530658-23530677 | MS.gene46645:intron | 25.0% |
| !! | ACTCTGTATTTTCGAATATA+TGG | - | chr3.3:23531928-23531947 | None:intergenic | 25.0% |
| !! | ATAAGTATTGTCAAACTGTT+TGG | + | chr3.3:23529996-23530015 | MS.gene46645:intron | 25.0% |
| !! | CATGGTTTTTCATGTATTTA+GGG | + | chr3.3:23533014-23533033 | MS.gene46645:intron | 25.0% |
| !! | GTGTTTAGTTTCTTATGAAA+AGG | + | chr3.3:23531054-23531073 | MS.gene46645:intron | 25.0% |
| !! | TAAACTGAATATGGATTTTC+AGG | - | chr3.3:23532018-23532037 | None:intergenic | 25.0% |
| !! | TAAGTATTGTCAAACTGTTT+GGG | + | chr3.3:23529997-23530016 | MS.gene46645:intron | 25.0% |
| !! | TTAAAGCGTATTTTCAAAAC+GGG | + | chr3.3:23531698-23531717 | MS.gene46645:intron | 25.0% |
| !! | TTAGATTCTGAAGATTGTAT+TGG | + | chr3.3:23534271-23534290 | MS.gene46645:CDS | 25.0% |
| !!! | AATTACTGATTTCAACAAGA+TGG | - | chr3.3:23532586-23532605 | None:intergenic | 25.0% |
| !!! | AGCTTTTGAATGTTTTTAAG+AGG | + | chr3.3:23532664-23532683 | MS.gene46645:intron | 25.0% |
| !!! | ATATGGATCTTCTTTGTTTT+TGG | - | chr3.3:23532559-23532578 | None:intergenic | 25.0% |
| !!! | ATTACTGATTTCAACAAGAT+GGG | - | chr3.3:23532585-23532604 | None:intergenic | 25.0% |
| !!! | TATGGATCTTCTTTGTTTTT+GGG | - | chr3.3:23532558-23532577 | None:intergenic | 25.0% |
| AAAAGAAAAAAAAGGTCGGA+AGG | + | chr3.3:23532062-23532081 | MS.gene46645:intron | 30.0% | |
| AAACATCCTGGATTTCAAAA+GGG | + | chr3.3:23532849-23532868 | MS.gene46645:CDS | 30.0% | |
| AAACCTTGGATCAAAAACTT+AGG | + | chr3.3:23531500-23531519 | MS.gene46645:intron | 30.0% | |
| AAAGAAAAAAAAGGTCGGAA+GGG | + | chr3.3:23532063-23532082 | MS.gene46645:intron | 30.0% | |
| AAAGATTTGGATATGGTTCT+GGG | + | chr3.3:23533289-23533308 | MS.gene46645:CDS | 30.0% | |
| AACCTTGGATCAAAAACTTA+GGG | + | chr3.3:23531501-23531520 | MS.gene46645:intron | 30.0% | |
| AATACTGTCTGAAAGCAATT+TGG | + | chr3.3:23530997-23531016 | MS.gene46645:intron | 30.0% | |
| AATTTGTGAACAACTGAAAG+GGG | + | chr3.3:23532120-23532139 | MS.gene46645:intron | 30.0% | |
| AGTTGTTCACAAATTTCTAC+AGG | - | chr3.3:23532115-23532134 | None:intergenic | 30.0% | |
| ATAAAAGCTGTGACAGTAAA+TGG | - | chr3.3:23534061-23534080 | None:intergenic | 30.0% | |
| ATCATTTACTTTGCTTACAC+TGG | + | chr3.3:23533072-23533091 | MS.gene46645:intron | 30.0% | |
| ATGTAACATGTGTCTTAATG+TGG | + | chr3.3:23532620-23532639 | MS.gene46645:intron | 30.0% | |
| ATGTACTTATTTGTGGAATG+TGG | + | chr3.3:23531766-23531785 | MS.gene46645:intron | 30.0% | |
| ATTGATCAAAGAGAAGTGAT+AGG | - | chr3.3:23533633-23533652 | None:intergenic | 30.0% | |
| GAAATTTGTGAACAACTGAA+AGG | + | chr3.3:23532118-23532137 | MS.gene46645:intron | 30.0% | |
| GCAAACTAATCCATTTCTAT+TGG | - | chr3.3:23531415-23531434 | None:intergenic | 30.0% | |
| GTACATATGGAACCTATTAT+TGG | - | chr3.3:23531752-23531771 | None:intergenic | 30.0% | |
| GTAGATATTTGATTGTGATG+TGG | + | chr3.3:23532085-23532104 | MS.gene46645:intron | 30.0% | |
| GTTAAGAAATATGCATACTC+CGG | - | chr3.3:23533772-23533791 | None:intergenic | 30.0% | |
| GTTATTGTTTACTTACTCAC+TGG | + | chr3.3:23530276-23530295 | MS.gene46645:intron | 30.0% | |
| GTTCCATATGTACTTATTTG+TGG | + | chr3.3:23531759-23531778 | MS.gene46645:intron | 30.0% | |
| GTTGTTCACAAATTTCTACA+GGG | - | chr3.3:23532114-23532133 | None:intergenic | 30.0% | |
| TAAGTAAGCACTTGTGTATA+AGG | - | chr3.3:23533946-23533965 | None:intergenic | 30.0% | |
| TAGATGAAGGTTCCAATAAT+AGG | + | chr3.3:23531737-23531756 | MS.gene46645:intron | 30.0% | |
| TATGTAAGCCATGTTATGTT+TGG | - | chr3.3:23531189-23531208 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr3.3:23529818-23529837 | None:intergenic | 30.0% | |
| TCTCGTGCTAAAATATTATC+AGG | + | chr3.3:23533381-23533400 | MS.gene46645:CDS | 30.0% | |
| TGTAACATGTGTCTTAATGT+GGG | + | chr3.3:23532621-23532640 | MS.gene46645:intron | 30.0% | |
| TGTGATTCTCCGTAATATTA+AGG | - | chr3.3:23530331-23530350 | None:intergenic | 30.0% | |
| TGTTAGTTGTTACACTGATA+GGG | + | chr3.3:23530495-23530514 | MS.gene46645:intron | 30.0% | |
| TTATTGGAACCTTCATCTAA+TGG | - | chr3.3:23531736-23531755 | None:intergenic | 30.0% | |
| TTCAATGGCCTATATTATAG+CGG | + | chr3.3:23533239-23533258 | MS.gene46645:intron | 30.0% | |
| TTCTCCAAGACAGTTTAAAA+GGG | + | chr3.3:23530081-23530100 | MS.gene46645:intron | 30.0% | |
| TTGTTAGTTGTTACACTGAT+AGG | + | chr3.3:23530494-23530513 | MS.gene46645:intron | 30.0% | |
| ! | AAACTTCCAGAAGATCTTTT+TGG | + | chr3.3:23532912-23532931 | MS.gene46645:CDS | 30.0% |
| ! | AACTTCCAGAAGATCTTTTT+GGG | + | chr3.3:23532913-23532932 | MS.gene46645:CDS | 30.0% |
| ! | AGATAGAGAGAATGCATTTT+AGG | + | chr3.3:23531617-23531636 | MS.gene46645:intron | 30.0% |
| ! | AGTACTGGGATTTCAAATTA+AGG | + | chr3.3:23532167-23532186 | MS.gene46645:intron | 30.0% |
| ! | GACGAGTTTTCATATACTTT+AGG | + | chr3.3:23530657-23530676 | MS.gene46645:intron | 30.0% |
| ! | TAAGTTTTTGATCCAAGGTT+TGG | - | chr3.3:23531501-23531520 | None:intergenic | 30.0% |
| ! | TCTTTAAGAATTGCATGACA+TGG | + | chr3.3:23532996-23533015 | MS.gene46645:intron | 30.0% |
| ! | TTAACTTGACCATTAGATGA+AGG | + | chr3.3:23531724-23531743 | MS.gene46645:intron | 30.0% |
| ! | TTTTCGTGACTGATATATTG+TGG | + | chr3.3:23532369-23532388 | MS.gene46645:intron | 30.0% |
| !! | AGTGCTTGTCATTACTTTTA+TGG | + | chr3.3:23532796-23532815 | MS.gene46645:intron | 30.0% |
| !! | ATAGAAATGGATTAGTTTGC+TGG | + | chr3.3:23531415-23531434 | MS.gene46645:intron | 30.0% |
| !! | GTCATTACTTTTATGGTTAG+AGG | + | chr3.3:23532803-23532822 | MS.gene46645:CDS | 30.0% |
| !! | TGACTCTACTTACTTTTCAA+AGG | + | chr3.3:23532733-23532752 | MS.gene46645:intron | 30.0% |
| !! | TGTTGCTATTTGTGATGAAT+TGG | + | chr3.3:23529709-23529728 | MS.gene46645:CDS | 30.0% |
| !!! | ATGGATCTTCTTTGTTTTTG+GGG | - | chr3.3:23532557-23532576 | None:intergenic | 30.0% |
| !!! | ATTCCTCTTGTTTTAGTACA+AGG | + | chr3.3:23533163-23533182 | MS.gene46645:intron | 30.0% |
| AAATTCCAACTGAAAGAGTC+AGG | - | chr3.3:23534132-23534151 | None:intergenic | 35.0% | |
| AACATTCAAAAGCTGATGTC+AGG | - | chr3.3:23532658-23532677 | None:intergenic | 35.0% | |
| AACTAAAGAAGCTGAAGCTT+GGG | + | chr3.3:23534195-23534214 | MS.gene46645:CDS | 35.0% | |
| ACAAATTCTATTCAGGACAC+TGG | - | chr3.3:23533708-23533727 | None:intergenic | 35.0% | |
| ACCTTGGATCAAAAACTTAG+GGG | + | chr3.3:23531502-23531521 | MS.gene46645:intron | 35.0% | |
| AGATAACATGTTTCAGCAGT+TGG | - | chr3.3:23529506-23529525 | None:intergenic | 35.0% | |
| ATAGTTGAGTAGATGACGTA+TGG | - | chr3.3:23530842-23530861 | None:intergenic | 35.0% | |
| ATATCCAAATCTTTCCTCTG+AGG | - | chr3.3:23533283-23533302 | None:intergenic | 35.0% | |
| ATCCTGACAGTATATTAAGC+TGG | + | chr3.3:23529540-23529559 | MS.gene46645:CDS | 35.0% | |
| ATGCTAGAGGAAAGAAACTT+TGG | + | chr3.3:23529594-23529613 | MS.gene46645:CDS | 35.0% | |
| ATTTGTGAACAACTGAAAGG+GGG | + | chr3.3:23532121-23532140 | MS.gene46645:intron | 35.0% | |
| CAAGTAGGTACTTATTCTGT+TGG | + | chr3.3:23530464-23530483 | MS.gene46645:intron | 35.0% | |
| CATAAACTGTCTTGGAGAAA+TGG | - | chr3.3:23530160-23530179 | None:intergenic | 35.0% | |
| CTAAAGAAGCGAATGTTTCT+AGG | - | chr3.3:23529746-23529765 | None:intergenic | 35.0% | |
| CTAATCCATTTCTATTGGCA+AGG | - | chr3.3:23531410-23531429 | None:intergenic | 35.0% | |
| CTACAATCAAAGGAGGAATT+TGG | - | chr3.3:23533918-23533937 | None:intergenic | 35.0% | |
| CTAGAAACATTCGCTTCTTT+AGG | + | chr3.3:23529744-23529763 | MS.gene46645:CDS | 35.0% | |
| CTTCAGAATCTAACTCATCT+TGG | - | chr3.3:23534264-23534283 | None:intergenic | 35.0% | |
| GAAAAATGGAAGCTTCTCAT+TGG | - | chr3.3:23531897-23531916 | None:intergenic | 35.0% | |
| GAAACATCCTGGATTTCAAA+AGG | + | chr3.3:23532848-23532867 | MS.gene46645:CDS | 35.0% | |
| GAAAGATTTGGATATGGTTC+TGG | + | chr3.3:23533288-23533307 | MS.gene46645:CDS | 35.0% | |
| GATAACATGTTTCAGCAGTT+GGG | - | chr3.3:23529505-23529524 | None:intergenic | 35.0% | |
| GCTAGAGTGACATTTAGTTA+TGG | + | chr3.3:23531567-23531586 | MS.gene46645:intron | 35.0% | |
| GCTGTATCACTAATTAACAC+GGG | - | chr3.3:23530898-23530917 | None:intergenic | 35.0% | |
| GGCTGTATCACTAATTAACA+CGG | - | chr3.3:23530899-23530918 | None:intergenic | 35.0% | |
| GGGCTAGATCTTGATTTATT+GGG | + | chr3.3:23533309-23533328 | MS.gene46645:CDS | 35.0% | |
| GGTAATTCTACAATCAAAGG+AGG | - | chr3.3:23533925-23533944 | None:intergenic | 35.0% | |
| GTAACATGTGTCTTAATGTG+GGG | + | chr3.3:23532622-23532641 | MS.gene46645:intron | 35.0% | |
| GTTCTCCAAGACAGTTTAAA+AGG | + | chr3.3:23530080-23530099 | MS.gene46645:intron | 35.0% | |
| TAACATGTGTCTTAATGTGG+GGG | + | chr3.3:23532623-23532642 | MS.gene46645:intron | 35.0% | |
| TCAGAGGAAAGATTTGGATA+TGG | + | chr3.3:23533282-23533301 | MS.gene46645:CDS | 35.0% | |
| TCCTGACAGTATATTAAGCT+GGG | + | chr3.3:23529541-23529560 | MS.gene46645:CDS | 35.0% | |
| TGATTAACTATGGACCTGTT+TGG | + | chr3.3:23529945-23529964 | MS.gene46645:intron | 35.0% | |
| TGCTACAAACTATCCCTAAA+AGG | + | chr3.3:23530612-23530631 | MS.gene46645:intron | 35.0% | |
| TGCTAGAGGAAAGAAACTTT+GGG | + | chr3.3:23529595-23529614 | MS.gene46645:CDS | 35.0% | |
| TGCTCAGCAGAAAACTATAT+AGG | + | chr3.3:23531381-23531400 | MS.gene46645:intron | 35.0% | |
| TTCAACAAGATGGGCAAATA+TGG | - | chr3.3:23532576-23532595 | None:intergenic | 35.0% | |
| TTTCAGTTGGAATTTCGACT+CGG | + | chr3.3:23534137-23534156 | MS.gene46645:CDS | 35.0% | |
| TTTCCTCTAGCATCAAGAAT+TGG | - | chr3.3:23529587-23529606 | None:intergenic | 35.0% | |
| TTTGTAGCATCTCAACAACA+AGG | - | chr3.3:23530601-23530620 | None:intergenic | 35.0% | |
| TTTGTTCAGTTACCTTACTC+AGG | + | chr3.3:23532948-23532967 | MS.gene46645:CDS | 35.0% | |
| ! | ACTGTCACAGCTTTTATGAA+TGG | + | chr3.3:23534064-23534083 | MS.gene46645:intron | 35.0% |
| ! | ACTTCCAGAAGATCTTTTTG+GGG | + | chr3.3:23532914-23532933 | MS.gene46645:CDS | 35.0% |
| ! | CACAGCTTTTATGAATGGAT+TGG | + | chr3.3:23534069-23534088 | MS.gene46645:intron | 35.0% |
| ! | CGTAGCATCTTTTCCTTTTA+GGG | - | chr3.3:23530628-23530647 | None:intergenic | 35.0% |
| ! | GGGTTTGAAATAAAGCTTTG+CGG | - | chr3.3:23530442-23530461 | None:intergenic | 35.0% |
| ! | TACCAGACAGTGTTTGAAAT+TGG | - | chr3.3:23532415-23532434 | None:intergenic | 35.0% |
| ! | TCGTAGCATCTTTTCCTTTT+AGG | - | chr3.3:23530629-23530648 | None:intergenic | 35.0% |
| ! | TGACAATCTGAGACACTAAT+TGG | + | chr3.3:23531443-23531462 | MS.gene46645:intron | 35.0% |
| ! | TGAGGTAGGACTTTTCTTAT+AGG | - | chr3.3:23534176-23534195 | None:intergenic | 35.0% |
| ! | TGGGCTAGATCTTGATTTAT+TGG | + | chr3.3:23533308-23533327 | MS.gene46645:CDS | 35.0% |
| ! | TTTGCCCTTTTAAACTGTCT+TGG | - | chr3.3:23530088-23530107 | None:intergenic | 35.0% |
| !! | AAGATCTTTTTGGGGAAAGA+TGG | + | chr3.3:23532922-23532941 | MS.gene46645:CDS | 35.0% |
| !! | ACTTACTTTTCAAAGGTGCA+CGG | + | chr3.3:23532740-23532759 | MS.gene46645:intron | 35.0% |
| !! | AGACTTTAGAGTGTCAATTG+TGG | + | chr3.3:23530793-23530812 | MS.gene46645:intron | 35.0% |
| !! | AGATCTTTTTGGGGAAAGAT+GGG | + | chr3.3:23532923-23532942 | MS.gene46645:CDS | 35.0% |
| !! | AGTAATGACAAGCACTGAAA+AGG | - | chr3.3:23532792-23532811 | None:intergenic | 35.0% |
| !! | GATGTGTAGTTTGTTTGGAT+TGG | + | chr3.3:23532225-23532244 | MS.gene46645:intron | 35.0% |
| !! | GCAAAGCTTTATTTCAAACC+CGG | + | chr3.3:23530441-23530460 | MS.gene46645:intron | 35.0% |
| !!! | GTGGTTTTAAATAGTGGTTG+CGG | + | chr3.3:23530304-23530323 | MS.gene46645:intron | 35.0% |
| !!! | TTCTTTGTTTTTGGGGATTC+TGG | - | chr3.3:23532550-23532569 | None:intergenic | 35.0% |
| AATAGCTAGGCATCAAGTAC+TGG | + | chr3.3:23532152-23532171 | MS.gene46645:intron | 40.0% | |
| AATCATACTCACCCGTTTAC+TGG | - | chr3.3:23531331-23531350 | None:intergenic | 40.0% | |
| ACAGTTTAAAAGGGCAAACC+CGG | + | chr3.3:23530090-23530109 | MS.gene46645:intron | 40.0% | |
| ACGTATGGTGTCCTATGTTA+AGG | - | chr3.3:23530827-23530846 | None:intergenic | 40.0% | |
| ACTCAACTCCACAAACTGAT+TGG | - | chr3.3:23530960-23530979 | None:intergenic | 40.0% | |
| ACTGTATACACGAAACATCC+TGG | + | chr3.3:23532837-23532856 | MS.gene46645:CDS | 40.0% | |
| AGAATAAGTACCTACTTGCC+GGG | - | chr3.3:23530462-23530481 | None:intergenic | 40.0% | |
| AGACCAATTCTTGATGCTAG+AGG | + | chr3.3:23529581-23529600 | MS.gene46645:CDS | 40.0% | |
| AGCTTCAGCTTCTTTAGTTG+AGG | - | chr3.3:23534194-23534213 | None:intergenic | 40.0% | |
| AGTACTTGATGCCTAGCTAT+TGG | - | chr3.3:23532153-23532172 | None:intergenic | 40.0% | |
| AGTTGCATTGCAGTTGTTGT+AGG | + | chr3.3:23532200-23532219 | MS.gene46645:intron | 40.0% | |
| ATAGCTAGGCATCAAGTACT+GGG | + | chr3.3:23532153-23532172 | MS.gene46645:intron | 40.0% | |
| ATCATACTCACCCGTTTACT+GGG | - | chr3.3:23531330-23531349 | None:intergenic | 40.0% | |
| CAACACTTTGTAGTTAGCAC+CGG | - | chr3.3:23532440-23532459 | None:intergenic | 40.0% | |
| CAACTAAAGAAGCTGAAGCT+TGG | + | chr3.3:23534194-23534213 | MS.gene46645:CDS | 40.0% | |
| CAGAATAAGTACCTACTTGC+CGG | - | chr3.3:23530463-23530482 | None:intergenic | 40.0% | |
| CAGTATATTAAGCTGGGAGT+TGG | + | chr3.3:23529547-23529566 | MS.gene46645:CDS | 40.0% | |
| CGCTAATAAAGCAAACACAC+TGG | + | chr3.3:23532320-23532339 | MS.gene46645:intron | 40.0% | |
| CTAACTCATCTTGGATTGCT+AGG | - | chr3.3:23534255-23534274 | None:intergenic | 40.0% | |
| CTATATTATAGCGGTTCGAG+AGG | + | chr3.3:23533248-23533267 | MS.gene46645:intron | 40.0% | |
| CTCCAATTTCAAACACTGTC+TGG | + | chr3.3:23532410-23532429 | MS.gene46645:intron | 40.0% | |
| CTCTCGAACCGCTATAATAT+AGG | - | chr3.3:23533250-23533269 | None:intergenic | 40.0% | |
| CTGATGACTTTACCTGAGTA+AGG | - | chr3.3:23532963-23532982 | None:intergenic | 40.0% | |
| CTTTCCCCAAAAAGATCTTC+TGG | - | chr3.3:23532921-23532940 | None:intergenic | 40.0% | |
| GGATTGTCTAATGGCAAAAG+AGG | - | chr3.3:23532882-23532901 | None:intergenic | 40.0% | |
| GGTTGCGGTCCTTAATATTA+CGG | + | chr3.3:23530319-23530338 | MS.gene46645:intron | 40.0% | |
| GGTTTCCTTGCCAATAGAAA+TGG | + | chr3.3:23531402-23531421 | MS.gene46645:intron | 40.0% | |
| GTCGCAAAAGGATTGTCTAA+TGG | - | chr3.3:23532891-23532910 | None:intergenic | 40.0% | |
| TAAGAGCTCTTCCCAGTAAA+CGG | + | chr3.3:23531316-23531335 | MS.gene46645:CDS | 40.0% | |
| TAAGCAGTGAGATAAGCGTT+TGG | + | chr3.3:23533741-23533760 | MS.gene46645:intron | 40.0% | |
| TATGATTTCTGACTCTGCTG+TGG | + | chr3.3:23531344-23531363 | MS.gene46645:intron | 40.0% | |
| TCAGCTTCTTTAGTTGAGGT+AGG | - | chr3.3:23534190-23534209 | None:intergenic | 40.0% | |
| TCAGCTTTCCAATCAGTTTG+TGG | + | chr3.3:23530949-23530968 | MS.gene46645:intron | 40.0% | |
| TCCCAGCTTAATATACTGTC+AGG | - | chr3.3:23529545-23529564 | None:intergenic | 40.0% | |
| TCTAACCTGACTCTTTCAGT+TGG | + | chr3.3:23534124-23534143 | MS.gene46645:CDS | 40.0% | |
| TTATTTCAAACCCGGCAAGT+AGG | + | chr3.3:23530449-23530468 | MS.gene46645:intron | 40.0% | |
| TTCAAAAGCTGATGTCAGGA+AGG | - | chr3.3:23532654-23532673 | None:intergenic | 40.0% | |
| ! | ACAAAAGCATGTAAGGAGCT+TGG | + | chr3.3:23531291-23531310 | MS.gene46645:CDS | 40.0% |
| ! | CAGCCTTGTACTAAAACAAG+AGG | - | chr3.3:23533169-23533188 | None:intergenic | 40.0% |
| ! | GTGTATTTCTGTTGCGTTGT+AGG | + | chr3.3:23531247-23531266 | MS.gene46645:intron | 40.0% |
| ! | TGAAAAGGCATGTTCATGTG+TGG | + | chr3.3:23531069-23531088 | MS.gene46645:intron | 40.0% |
| ! | TGGTGCTAAGTCCTTAACAT+AGG | + | chr3.3:23530813-23530832 | MS.gene46645:intron | 40.0% |
| !! | AGATAAGCGTTTGGTCTTAC+CGG | + | chr3.3:23533750-23533769 | MS.gene46645:intron | 40.0% |
| !! | AGGTCGATGTGTAGTTTGTT+TGG | + | chr3.3:23532220-23532239 | MS.gene46645:intron | 40.0% |
| !! | CTGAAGATTGTATTGGCTTC+TGG | + | chr3.3:23534278-23534297 | MS.gene46645:CDS | 40.0% |
| !! | GTTTGGATTGGCTTCAGAAA+AGG | + | chr3.3:23532237-23532256 | MS.gene46645:intron | 40.0% |
| !! | TGGTGTCTTTAAGACTTGCA+GGG | + | chr3.3:23531089-23531108 | MS.gene46645:intron | 40.0% |
| !! | TTACGGTGTTACTTGCTGTT+TGG | + | chr3.3:23529801-23529820 | MS.gene46645:intron | 40.0% |
| !!! | GCAGTCGTGGTTTTAAATAG+TGG | + | chr3.3:23530298-23530317 | MS.gene46645:intron | 40.0% |
| !!! | TTGGATCCCTTTTGAAATCC+AGG | - | chr3.3:23532858-23532877 | None:intergenic | 40.0% |
| AAGAGCTCTTCCCAGTAAAC+GGG | + | chr3.3:23531317-23531336 | MS.gene46645:CDS | 45.0% | |
| AAGATGCAACAGCCAATCCT+GGG | - | chr3.3:23533362-23533381 | None:intergenic | 45.0% | |
| AAGCTTTGCGGCCAAAATCT+AGG | - | chr3.3:23530430-23530449 | None:intergenic | 45.0% | |
| AGACTTGCAGGGATTTCACA+TGG | + | chr3.3:23531100-23531119 | MS.gene46645:intron | 45.0% | |
| AGCTGTGACAGTAAATGGTG+AGG | - | chr3.3:23534056-23534075 | None:intergenic | 45.0% | |
| ATACTGTCAGGATCAGCTTC+TGG | - | chr3.3:23529533-23529552 | None:intergenic | 45.0% | |
| ATGTGTCTTAATGTGGGGGA+AGG | + | chr3.3:23532627-23532646 | MS.gene46645:intron | 45.0% | |
| CACTCTCTCTAACACTCTAG+TGG | - | chr3.3:23533594-23533613 | None:intergenic | 45.0% | |
| CTGCAATGCAACCACAATTG+AGG | - | chr3.3:23530374-23530393 | None:intergenic | 45.0% | |
| GAAGCAGCTAAGAAAGCTTC+TGG | + | chr3.3:23534217-23534236 | MS.gene46645:CDS | 45.0% | |
| GACTGATGAAGCCTCAATTG+TGG | + | chr3.3:23530360-23530379 | MS.gene46645:intron | 45.0% | |
| GACTTGCAGGGATTTCACAT+GGG | + | chr3.3:23531101-23531120 | MS.gene46645:intron | 45.0% | |
| GCTGTGACAGTAAATGGTGA+GGG | - | chr3.3:23534055-23534074 | None:intergenic | 45.0% | |
| GGAGCTCTGTTCCATTGAAA+CGG | + | chr3.3:23534090-23534109 | MS.gene46645:CDS | 45.0% | |
| GTCTAATGGCAAAAGAGGCT+TGG | - | chr3.3:23532877-23532896 | None:intergenic | 45.0% | |
| TACTGTCAGGATCAGCTTCT+GGG | - | chr3.3:23529532-23529551 | None:intergenic | 45.0% | |
| TATTATAGCGGTTCGAGAGG+AGG | + | chr3.3:23533251-23533270 | MS.gene46645:intron | 45.0% | |
| TCAAACACTGTCTGGTAGAC+CGG | + | chr3.3:23532418-23532437 | MS.gene46645:intron | 45.0% | |
| TCAGCCTCAGAGGAAAGATT+TGG | + | chr3.3:23533276-23533295 | MS.gene46645:CDS | 45.0% | |
| TCAGTTTGTGGAGTTGAGTC+AGG | + | chr3.3:23530961-23530980 | MS.gene46645:intron | 45.0% | |
| TCTGGAAGTTTCGTCGCAAA+AGG | - | chr3.3:23532903-23532922 | None:intergenic | 45.0% | |
| TTGTGGCTGATCACATTACG+AGG | + | chr3.3:23532386-23532405 | MS.gene46645:intron | 45.0% | |
| ! | CGGTGCTAACTACAAAGTGT+TGG | + | chr3.3:23532438-23532457 | MS.gene46645:intron | 45.0% |
| ! | GCCCCTAAGTTTTTGATCCA+AGG | - | chr3.3:23531506-23531525 | None:intergenic | 45.0% |
| ! | TTATGCCGTGGCCTAGATTT+TGG | + | chr3.3:23530416-23530435 | MS.gene46645:intron | 45.0% |
| !! | AAATCTTTCCTCTGAGGCTG+AGG | - | chr3.3:23533277-23533296 | None:intergenic | 45.0% |
| !! | AAGCGAATGTTTCTAGGCAC+AGG | - | chr3.3:23529740-23529759 | None:intergenic | 45.0% |
| !! | GTGGTGTCTTTAAGACTTGC+AGG | + | chr3.3:23531088-23531107 | MS.gene46645:intron | 45.0% |
| AACAGCCAATCCTGGGATCA+AGG | - | chr3.3:23533355-23533374 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATATGC+AGG | + | chr3.3:23530116-23530135 | MS.gene46645:intron | 50.0% | |
| CTAAAGCTCCCGCATATGCA+GGG | + | chr3.3:23530117-23530136 | MS.gene46645:intron | 50.0% | |
| GAAGACCTTGATCCCAGGAT+TGG | + | chr3.3:23533347-23533366 | MS.gene46645:CDS | 50.0% | |
| GAAGATGCAACAGCCAATCC+TGG | - | chr3.3:23533363-23533382 | None:intergenic | 50.0% | |
| GCAGCTAAGAAAGCTTCTGG+AGG | + | chr3.3:23534220-23534239 | MS.gene46645:CDS | 50.0% | |
| GGGGGAAAATGCCAATAGCT+AGG | + | chr3.3:23532139-23532158 | MS.gene46645:intron | 50.0% | |
| GTAACGTGCATGCCAAACCT+TGG | + | chr3.3:23531486-23531505 | MS.gene46645:intron | 50.0% | |
| TACTTACTCACTGGCAGTCG+TGG | + | chr3.3:23530285-23530304 | MS.gene46645:intron | 50.0% | |
| !!! | GTTTTGGCGCTGACATGCTA+TGG | + | chr3.3:23532284-23532303 | MS.gene46645:intron | 50.0% |
| CATATGCAGGGTTCGGGAAG+GGG | + | chr3.3:23530129-23530148 | MS.gene46645:intron | 55.0% | |
| CTTCCCGAACCCTGCATATG+CGG | - | chr3.3:23530129-23530148 | None:intergenic | 55.0% | |
| GACGAGAAGACCTTGATCCC+AGG | + | chr3.3:23533342-23533361 | MS.gene46645:CDS | 55.0% | |
| GCATATGCAGGGTTCGGGAA+GGG | + | chr3.3:23530128-23530147 | MS.gene46645:intron | 55.0% | |
| GCGTGCAGTGTCCGTTTCAA+TGG | - | chr3.3:23534104-23534123 | None:intergenic | 55.0% | |
| TGCGGCCAAAATCTAGGCCA+CGG | - | chr3.3:23530424-23530443 | None:intergenic | 55.0% | |
| TTCCCGAACCCTGCATATGC+GGG | - | chr3.3:23530128-23530147 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr3.3:23530112-23530131 | None:intergenic | 55.0% |
| CGCATATGCAGGGTTCGGGA+AGG | + | chr3.3:23530127-23530146 | MS.gene46645:intron | 60.0% | |
| CTCCCGCATATGCAGGGTTC+GGG | + | chr3.3:23530123-23530142 | MS.gene46645:intron | 60.0% | |
| GCTCCCGCATATGCAGGGTT+CGG | + | chr3.3:23530122-23530141 | MS.gene46645:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr3.3:23530111-23530130 | None:intergenic | 60.0% |
| AGAGGAGGCCTCAGCCTCAG+AGG | + | chr3.3:23533266-23533285 | MS.gene46645:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 23529491 | 23534333 | 23529491 | ID=MS.gene46645 |
| chr3.3 | mRNA | 23529491 | 23534333 | 23529491 | ID=MS.gene46645.t1;Parent=MS.gene46645 |
| chr3.3 | exon | 23529491 | 23529765 | 23529491 | ID=MS.gene46645.t1.exon1;Parent=MS.gene46645.t1 |
| chr3.3 | CDS | 23529491 | 23529765 | 23529491 | ID=cds.MS.gene46645.t1;Parent=MS.gene46645.t1 |
| chr3.3 | exon | 23531269 | 23531338 | 23531269 | ID=MS.gene46645.t1.exon2;Parent=MS.gene46645.t1 |
| chr3.3 | CDS | 23531269 | 23531338 | 23531269 | ID=cds.MS.gene46645.t1;Parent=MS.gene46645.t1 |
| chr3.3 | exon | 23532798 | 23532969 | 23532798 | ID=MS.gene46645.t1.exon3;Parent=MS.gene46645.t1 |
| chr3.3 | CDS | 23532798 | 23532969 | 23532798 | ID=cds.MS.gene46645.t1;Parent=MS.gene46645.t1 |
| chr3.3 | exon | 23533259 | 23533402 | 23533259 | ID=MS.gene46645.t1.exon4;Parent=MS.gene46645.t1 |
| chr3.3 | CDS | 23533259 | 23533402 | 23533259 | ID=cds.MS.gene46645.t1;Parent=MS.gene46645.t1 |
| chr3.3 | exon | 23534074 | 23534333 | 23534074 | ID=MS.gene46645.t1.exon5;Parent=MS.gene46645.t1 |
| chr3.3 | CDS | 23534074 | 23534333 | 23534074 | ID=cds.MS.gene46645.t1;Parent=MS.gene46645.t1 |
| Gene Sequence |
| Protein sequence |
