AlfalfaGEDB | MS.gene72784

M. sativa cultivar XinJiangDaYe / MS.gene72784

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72784.t1	XP_003612548.1	92.6	135	9	1	1	134	1	135	6.90E-62	246.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72784.t1	G7K5F6	92.6	135	9	1	1	134	1	135	5.0e-62	246.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene72784	0.841564	4.40E-58	-1.69E-46
MS.gene049217	MS.gene72784	0.86331	2.73E-64	-1.69E-46
MS.gene049222	MS.gene72784	0.854519	1.17E-61	-1.69E-46
MS.gene049232	MS.gene72784	0.851544	8.28E-61	-1.69E-46
MS.gene049285	MS.gene72784	0.878947	1.86E-69	-1.69E-46
MS.gene049320	MS.gene72784	0.880502	5.21E-70	-1.69E-46
MS.gene049609	MS.gene72784	0.836998	6.74E-57	-1.69E-46
MS.gene049627	MS.gene72784	0.807716	4.41E-50	-1.69E-46
MS.gene049805	MS.gene72784	0.823512	1.33E-53	-1.69E-46
MS.gene05010	MS.gene72784	0.8441	9.32E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72784.t1	MTR_5g026290	92.593	135	9	1	1	134	1	135	1.96e-90	258

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 18 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGGGTCATCACATGAAAA+AGG	0.380796	5.1:-16853700	MS.gene72784:CDS
AGCACAAAAGCTTCACAGGT+TGG	0.529568	5.1:-16853650	MS.gene72784:CDS
ATATTTGTACTTTGTTAATT+TGG	0.112303	5.1:+16853478	None:intergenic
ATGCATTGTGCAGCTTCTTA+TGG	0.341347	5.1:-16853832	MS.gene72784:CDS
ATTCACTAGCAACATCTCCA+AGG	0.613391	5.1:+16853560	None:intergenic
CCATCTCGTCGCAAAAGCTA+TGG	0.544204	5.1:-16853787	MS.gene72784:CDS
CTCAAGCACAAAAGCTTCAC+AGG	0.495602	5.1:-16853654	MS.gene72784:CDS
CTGCACAATGCATTAGTGTT+TGG	0.388403	5.1:+16853842	None:intergenic
CTTTGAAGTTGCTTTCTTCA+GGG	0.422990	5.1:+16853734	None:intergenic
CTTTGTTAATTTGGAATAAC+TGG	0.189219	5.1:+16853487	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAACTGGAACGGAAAAATA+TGG	+	chr5.1:16853867-16853886	None:intergenic	30.0%
AAGGGGTCATCACATGAAAA+AGG	-	chr5.1:16853666-16853685	MS.gene72784:CDS	40.0%
ATGCATTGTGCAGCTTCTTA+TGG	-	chr5.1:16853534-16853553	MS.gene72784:CDS	40.0%
ATTCACTAGCAACATCTCCA+AGG	+	chr5.1:16853809-16853828	None:intergenic	40.0%
CTGCACAATGCATTAGTGTT+TGG	+	chr5.1:16853527-16853546	None:intergenic	40.0%
GAGATGTTGCTAGTGAATCA+AGG	-	chr5.1:16853811-16853830	MS.gene72784:CDS	40.0%
GCTAGTGAATCAAGGATGAT+GGG	-	chr5.1:16853819-16853838	MS.gene72784:CDS	40.0%
TGCTAGTGAATCAAGGATGA+TGG	-	chr5.1:16853818-16853837	MS.gene72784:CDS	40.0%
AGCACAAAAGCTTCACAGGT+TGG	-	chr5.1:16853716-16853735	MS.gene72784:CDS	45.0%
CTCAAGCACAAAAGCTTCAC+AGG	-	chr5.1:16853712-16853731	MS.gene72784:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	16853492	16853896	16853492	ID=MS.gene72784
chr5.1	mRNA	16853492	16853896	16853492	ID=MS.gene72784.t1;Parent=MS.gene72784
chr5.1	exon	16853492	16853896	16853492	ID=MS.gene72784.t1.exon1;Parent=MS.gene72784.t1
chr5.1	CDS	16853492	16853896	16853492	ID=cds.MS.gene72784.t1;Parent=MS.gene72784.t1

Gene Sequence

>MS.gene72784

ATGGCTTCACAACTTGTTAGTGATGTCAAATGCCAAACACTAATGCATTGTGCAGCTTCTTATGGTGAAAGAGGAAGCAAACCAACACCATCTCGTCGCAAAAGCTATGGCTACTGTCGAGTAGAGAATAGCATCGTCTACCCTGAAGAAAGCAACTTCAAAGAACAAAAAAACAAGGGGTCATCACATGAAAAAGGTGTAAAACGTAACACAAATCTAGCTCAAGCACAAAAGCTTCACAGGTTGGGATTCTCTTACATTGCAACATCTTTTCTTTACATGGTAATTAAGGTTAAAGCATTTTACAATGGTTTCCTTGGAGATGTTGCTAGTGAATCAAGGATGATGGGAATTGATGCACCAATGGCAGAACCATATTTTTCCGTTCCAGTTATTCCAAATTAA

Protein sequence

>MS.gene72784.t1

MASQLVSDVKCQTLMHCAASYGERGSKPTPSRRKSYGYCRVENSIVYPEESNFKEQKNKGSSHEKGVKRNTNLAQAQKLHRLGFSYIATSFLYMVIKVKAFYNGFLGDVASESRMMGIDAPMAEPYFSVPVIPN