AlfalfaGEDB | MS.gene72784

M. sativa cultivar XinJiangDaYe / MS.gene72784

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72784.t1	XP_003612548.1	92.6	135	9	1	1	134	1	135	6.90E-62	246.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72784.t1	G7K5F6	92.6	135	9	1	1	134	1	135	5.0e-62	246.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene72784	0.841564	4.40E-58	-1.69E-46
MS.gene049217	MS.gene72784	0.86331	2.73E-64	-1.69E-46
MS.gene049222	MS.gene72784	0.854519	1.17E-61	-1.69E-46
MS.gene049232	MS.gene72784	0.851544	8.28E-61	-1.69E-46
MS.gene049285	MS.gene72784	0.878947	1.86E-69	-1.69E-46
MS.gene049320	MS.gene72784	0.880502	5.21E-70	-1.69E-46
MS.gene049609	MS.gene72784	0.836998	6.74E-57	-1.69E-46
MS.gene049627	MS.gene72784	0.807716	4.41E-50	-1.69E-46
MS.gene049805	MS.gene72784	0.823512	1.33E-53	-1.69E-46
MS.gene05010	MS.gene72784	0.8441	9.32E-59	-1.69E-46
MS.gene050163	MS.gene72784	0.840669	7.56E-58	-1.69E-46
MS.gene050165	MS.gene72784	0.82614	3.19E-54	-1.69E-46
MS.gene050216	MS.gene72784	0.811193	7.91E-51	-1.69E-46
MS.gene050323	MS.gene72784	0.817066	4.00E-52	-1.69E-46
MS.gene050325	MS.gene72784	-0.819088	1.40E-52	-1.69E-46
MS.gene050327	MS.gene72784	-0.819897	9.13E-53	-1.69E-46
MS.gene050333	MS.gene72784	0.828316	9.62E-55	-1.69E-46
MS.gene050381	MS.gene72784	-0.815497	8.97E-52	-1.69E-46
MS.gene050496	MS.gene72784	0.807357	5.26E-50	-1.69E-46
MS.gene050504	MS.gene72784	0.866763	2.25E-65	-1.69E-46
MS.gene050518	MS.gene72784	0.84574	3.36E-59	-1.69E-46
MS.gene050577	MS.gene72784	0.84494	5.54E-59	-1.69E-46
MS.gene050593	MS.gene72784	0.812436	4.24E-51	-1.69E-46
MS.gene050612	MS.gene72784	0.831985	1.22E-55	-1.69E-46
MS.gene050662	MS.gene72784	0.801386	9.23E-49	-1.69E-46
MS.gene050675	MS.gene72784	0.833989	3.89E-56	-1.69E-46
MS.gene050699	MS.gene72784	0.861772	8.11E-64	-1.69E-46
MS.gene050747	MS.gene72784	0.843351	1.48E-58	-1.69E-46
MS.gene050772	MS.gene72784	0.860601	1.84E-63	-1.69E-46
MS.gene050868	MS.gene72784	0.817374	3.41E-52	-1.69E-46
MS.gene050871	MS.gene72784	0.81807	2.37E-52	-1.69E-46
MS.gene050883	MS.gene72784	-0.830206	3.35E-55	-1.69E-46
MS.gene050950	MS.gene72784	0.83823	3.25E-57	-1.69E-46
MS.gene050986	MS.gene72784	0.83636	9.80E-57	-1.69E-46
MS.gene05100	MS.gene72784	0.845545	3.80E-59	-1.69E-46
MS.gene051167	MS.gene72784	-0.821447	4.02E-53	-1.69E-46
MS.gene051551	MS.gene72784	0.874606	5.92E-68	-1.69E-46
MS.gene051666	MS.gene72784	0.817583	3.06E-52	-1.69E-46
MS.gene051694	MS.gene72784	0.839583	1.45E-57	-1.69E-46
MS.gene051810	MS.gene72784	0.81149	6.82E-51	-1.69E-46
MS.gene051858	MS.gene72784	0.844295	8.26E-59	-1.69E-46
MS.gene052164	MS.gene72784	0.832486	9.20E-56	-1.69E-46
MS.gene052271	MS.gene72784	0.83657	8.66E-57	-1.69E-46
MS.gene052482	MS.gene72784	0.842074	3.23E-58	-1.69E-46
MS.gene052486	MS.gene72784	0.84818	7.22E-60	-1.69E-46
MS.gene052501	MS.gene72784	0.802103	6.58E-49	-1.69E-46
MS.gene052503	MS.gene72784	0.856182	3.83E-62	-1.69E-46
MS.gene052506	MS.gene72784	0.840245	9.77E-58	-1.69E-46
MS.gene052615	MS.gene72784	0.844195	8.79E-59	-1.69E-46
MS.gene052822	MS.gene72784	0.84135	5.01E-58	-1.69E-46
MS.gene052823	MS.gene72784	0.850488	1.64E-60	-1.69E-46
MS.gene052825	MS.gene72784	0.845894	3.06E-59	-1.69E-46
MS.gene052916	MS.gene72784	0.843871	1.07E-58	-1.69E-46
MS.gene053018	MS.gene72784	0.832027	1.19E-55	-1.69E-46
MS.gene053203	MS.gene72784	0.833299	5.78E-56	-1.69E-46
MS.gene053213	MS.gene72784	0.88968	1.95E-73	-1.69E-46
MS.gene053286	MS.gene72784	0.88475	1.47E-71	-1.69E-46
MS.gene053322	MS.gene72784	0.809837	1.55E-50	-1.69E-46
MS.gene053420	MS.gene72784	-0.814284	1.67E-51	-1.69E-46
MS.gene053436	MS.gene72784	0.866194	3.41E-65	-1.69E-46
MS.gene053480	MS.gene72784	0.806263	8.95E-50	-1.69E-46
MS.gene053574	MS.gene72784	0.878346	3.02E-69	-1.69E-46
MS.gene053626	MS.gene72784	0.837849	4.08E-57	-1.69E-46
MS.gene053632	MS.gene72784	0.835047	2.11E-56	-1.69E-46
MS.gene053824	MS.gene72784	0.817262	3.61E-52	-1.69E-46
MS.gene054003	MS.gene72784	0.837183	6.04E-57	-1.69E-46
MS.gene054408	MS.gene72784	0.808372	3.20E-50	-1.69E-46
MS.gene054595	MS.gene72784	0.837145	6.18E-57	-1.69E-46
MS.gene054600	MS.gene72784	0.813775	2.16E-51	-1.69E-46
MS.gene054642	MS.gene72784	0.868308	7.19E-66	-1.69E-46
MS.gene05470	MS.gene72784	0.813369	2.65E-51	-1.69E-46
MS.gene054927	MS.gene72784	0.808396	3.16E-50	-1.69E-46
MS.gene054954	MS.gene72784	0.873705	1.20E-67	-1.69E-46
MS.gene05505	MS.gene72784	0.825294	5.07E-54	-1.69E-46
MS.gene055154	MS.gene72784	-0.82074	5.85E-53	-1.69E-46
MS.gene055206	MS.gene72784	0.804728	1.88E-49	-1.69E-46
MS.gene055289	MS.gene72784	0.806658	7.39E-50	-1.69E-46
MS.gene055362	MS.gene72784	0.876971	9.13E-69	-1.69E-46
MS.gene055502	MS.gene72784	0.872581	2.85E-67	-1.69E-46
MS.gene055577	MS.gene72784	0.834796	2.44E-56	-1.69E-46
MS.gene055647	MS.gene72784	0.828041	1.12E-54	-1.69E-46
MS.gene055722	MS.gene72784	0.839042	2.01E-57	-1.69E-46
MS.gene055750	MS.gene72784	0.802068	6.68E-49	-1.69E-46
MS.gene055941	MS.gene72784	0.825421	4.73E-54	-1.69E-46
MS.gene056040	MS.gene72784	0.802113	6.54E-49	-1.69E-46
MS.gene056046	MS.gene72784	0.818121	2.31E-52	-1.69E-46
MS.gene056083	MS.gene72784	0.818835	1.59E-52	-1.69E-46
MS.gene056311	MS.gene72784	-0.812999	3.20E-51	-1.69E-46
MS.gene056374	MS.gene72784	0.86424	1.40E-64	-1.69E-46
MS.gene056409	MS.gene72784	0.818846	1.58E-52	-1.69E-46
MS.gene056448	MS.gene72784	0.823991	1.03E-53	-1.69E-46
MS.gene056504	MS.gene72784	0.849283	3.57E-60	-1.69E-46
MS.gene056510	MS.gene72784	0.835183	1.95E-56	-1.69E-46
MS.gene056549	MS.gene72784	0.805743	1.15E-49	-1.69E-46
MS.gene056610	MS.gene72784	0.811118	8.21E-51	-1.69E-46
MS.gene056657	MS.gene72784	0.886692	2.74E-72	-1.69E-46
MS.gene056692	MS.gene72784	0.821566	3.77E-53	-1.69E-46
MS.gene056878	MS.gene72784	0.800389	1.47E-48	-1.69E-46
MS.gene056942	MS.gene72784	0.815949	7.11E-52	-1.69E-46
MS.gene056946	MS.gene72784	0.829919	3.93E-55	-1.69E-46
MS.gene057146	MS.gene72784	0.801258	9.80E-49	-1.69E-46
MS.gene057416	MS.gene72784	0.85727	1.83E-62	-1.69E-46
MS.gene057831	MS.gene72784	0.824767	6.75E-54	-1.69E-46
MS.gene057926	MS.gene72784	0.80357	3.27E-49	-1.69E-46
MS.gene058019	MS.gene72784	0.830537	2.78E-55	-1.69E-46
MS.gene058157	MS.gene72784	0.816693	4.85E-52	-1.69E-46
MS.gene058183	MS.gene72784	0.817935	2.55E-52	-1.69E-46
MS.gene05837	MS.gene72784	0.829823	4.15E-55	-1.69E-46
MS.gene058419	MS.gene72784	0.883034	6.31E-71	-1.69E-46
MS.gene058544	MS.gene72784	0.841446	4.73E-58	-1.69E-46
MS.gene058773	MS.gene72784	0.823213	1.56E-53	-1.69E-46
MS.gene05883	MS.gene72784	0.820965	5.19E-53	-1.69E-46
MS.gene059022	MS.gene72784	0.871508	6.48E-67	-1.69E-46
MS.gene059023	MS.gene72784	0.83249	9.18E-56	-1.69E-46
MS.gene059034	MS.gene72784	0.816078	6.66E-52	-1.69E-46
MS.gene05913	MS.gene72784	0.807455	5.01E-50	-1.69E-46
MS.gene05934	MS.gene72784	0.804936	1.70E-49	-1.69E-46
MS.gene059367	MS.gene72784	0.834809	2.42E-56	-1.69E-46
MS.gene059368	MS.gene72784	0.805886	1.08E-49	-1.69E-46
MS.gene059536	MS.gene72784	0.813753	2.18E-51	-1.69E-46
MS.gene059677	MS.gene72784	0.860519	1.95E-63	-1.69E-46
MS.gene059718	MS.gene72784	0.867875	9.91E-66	-1.69E-46
MS.gene059756	MS.gene72784	0.838385	2.97E-57	-1.69E-46
MS.gene059801	MS.gene72784	0.810765	9.79E-51	-1.69E-46
MS.gene059865	MS.gene72784	0.833414	5.41E-56	-1.69E-46
MS.gene059902	MS.gene72784	0.841559	4.42E-58	-1.69E-46
MS.gene060482	MS.gene72784	0.884484	1.84E-71	-1.69E-46
MS.gene060595	MS.gene72784	-0.80623	9.10E-50	-1.69E-46
MS.gene060703	MS.gene72784	0.83589	1.29E-56	-1.69E-46
MS.gene060762	MS.gene72784	0.821465	3.98E-53	-1.69E-46
MS.gene060778	MS.gene72784	0.826715	2.33E-54	-1.69E-46
MS.gene06077	MS.gene72784	0.867847	1.01E-65	-1.69E-46
MS.gene060804	MS.gene72784	0.816242	6.12E-52	-1.69E-46
MS.gene060835	MS.gene72784	0.810344	1.21E-50	-1.69E-46
MS.gene06092	MS.gene72784	0.825326	4.98E-54	-1.69E-46
MS.gene060982	MS.gene72784	0.818344	2.06E-52	-1.69E-46
MS.gene061134	MS.gene72784	0.814869	1.24E-51	-1.69E-46
MS.gene061150	MS.gene72784	0.822905	1.84E-53	-1.69E-46
MS.gene061200	MS.gene72784	0.826121	3.23E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72784.t1	MTR_5g026290	92.593	135	9	1	1	134	1	135	1.96e-90	258

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 18 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATATTTGTACTTTGTTAATT+TGG	0.112303	5.1:+16853478	None:intergenic
CTTTGTTAATTTGGAATAAC+TGG	0.189219	5.1:+16853487	None:intergenic
TCTTTGAAGTTGCTTTCTTC+AGG	0.231770	5.1:+16853733	None:intergenic
ATGCATTGTGCAGCTTCTTA+TGG	0.341347	5.1:-16853832	MS.gene72784:CDS
AAGGGGTCATCACATGAAAA+AGG	0.380796	5.1:-16853700	MS.gene72784:CDS
CTGCACAATGCATTAGTGTT+TGG	0.388403	5.1:+16853842	None:intergenic
CTTTGAAGTTGCTTTCTTCA+GGG	0.422990	5.1:+16853734	None:intergenic
GCACAAAAGCTTCACAGGTT+GGG	0.439585	5.1:-16853649	MS.gene72784:CDS
CTCAAGCACAAAAGCTTCAC+AGG	0.495602	5.1:-16853654	MS.gene72784:CDS
GCAGCTTCTTATGGTGAAAG+AGG	0.521502	5.1:-16853823	MS.gene72784:CDS
AGCACAAAAGCTTCACAGGT+TGG	0.529568	5.1:-16853650	MS.gene72784:CDS
TGCTAGTGAATCAAGGATGA+TGG	0.543307	5.1:-16853548	MS.gene72784:CDS
CCATCTCGTCGCAAAAGCTA+TGG	0.544204	5.1:-16853787	MS.gene72784:CDS
TTAATTTGGAATAACTGGAA+CGG	0.567626	5.1:+16853492	None:intergenic
GAGATGTTGCTAGTGAATCA+AGG	0.609919	5.1:-16853555	MS.gene72784:CDS
GCTAGTGAATCAAGGATGAT+GGG	0.613297	5.1:-16853547	MS.gene72784:CDS
ATTCACTAGCAACATCTCCA+AGG	0.613391	5.1:+16853560	None:intergenic
GATGGGAATTGATGCACCAA+TGG	0.622941	5.1:-16853530	MS.gene72784:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTCAAAGAACAAAAAAACAA+GGG	-	chr5.1:16853648-16853667	MS.gene72784:CDS	20.0%
!!!	TTTTCTTTACATGGTAATTA+AGG	-	chr5.1:16853761-16853780	MS.gene72784:CDS	20.0%
!	CTTCAAAGAACAAAAAAACA+AGG	-	chr5.1:16853647-16853666	MS.gene72784:CDS	25.0%
!	TCAAAGAACAAAAAAACAAG+GGG	-	chr5.1:16853649-16853668	MS.gene72784:CDS	25.0%
!!	TTAATTTGGAATAACTGGAA+CGG	+	chr5.1:16853877-16853896	None:intergenic	25.0%
!!!	AAGGTTAAAGCATTTTACAA+TGG	-	chr5.1:16853780-16853799	MS.gene72784:CDS	25.0%
	ATAACTGGAACGGAAAAATA+TGG	+	chr5.1:16853867-16853886	None:intergenic	30.0%
!	TGCAACATCTTTTCTTTACA+TGG	-	chr5.1:16853752-16853771	MS.gene72784:CDS	30.0%
!	GAAAAATATGGTTCTGCCAT+TGG	+	chr5.1:16853855-16853874	None:intergenic	35.0%
!	GCATTTTACAATGGTTTCCT+TGG	-	chr5.1:16853789-16853808	MS.gene72784:CDS	35.0%
!!	CTTTGAAGTTGCTTTCTTCA+GGG	+	chr5.1:16853635-16853654	None:intergenic	35.0%
!!	TCTTTGAAGTTGCTTTCTTC+AGG	+	chr5.1:16853636-16853655	None:intergenic	35.0%
	AAGGGGTCATCACATGAAAA+AGG	-	chr5.1:16853666-16853685	MS.gene72784:CDS	40.0%
	ATGCATTGTGCAGCTTCTTA+TGG	-	chr5.1:16853534-16853553	MS.gene72784:CDS	40.0%
	ATTCACTAGCAACATCTCCA+AGG	+	chr5.1:16853809-16853828	None:intergenic	40.0%
	CTGCACAATGCATTAGTGTT+TGG	+	chr5.1:16853527-16853546	None:intergenic	40.0%
	GAGATGTTGCTAGTGAATCA+AGG	-	chr5.1:16853811-16853830	MS.gene72784:CDS	40.0%
	GCTAGTGAATCAAGGATGAT+GGG	-	chr5.1:16853819-16853838	MS.gene72784:CDS	40.0%
	TGCTAGTGAATCAAGGATGA+TGG	-	chr5.1:16853818-16853837	MS.gene72784:CDS	40.0%
	AGCACAAAAGCTTCACAGGT+TGG	-	chr5.1:16853716-16853735	MS.gene72784:CDS	45.0%
	CTCAAGCACAAAAGCTTCAC+AGG	-	chr5.1:16853712-16853731	MS.gene72784:CDS	45.0%
	GATGGGAATTGATGCACCAA+TGG	-	chr5.1:16853836-16853855	MS.gene72784:CDS	45.0%
	GCACAAAAGCTTCACAGGTT+GGG	-	chr5.1:16853717-16853736	MS.gene72784:CDS	45.0%
	GCAGCTTCTTATGGTGAAAG+AGG	-	chr5.1:16853543-16853562	MS.gene72784:CDS	45.0%
	CCATCTCGTCGCAAAAGCTA+TGG	-	chr5.1:16853579-16853598	MS.gene72784:CDS	50.0%
!	CCATAGCTTTTGCGACGAGA+TGG	+	chr5.1:16853582-16853601	None:intergenic	50.0%
!	CTTTTGCGACGAGATGGTGT+TGG	+	chr5.1:16853576-16853595	None:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	16853492	16853896	16853492	ID=MS.gene72784
chr5.1	mRNA	16853492	16853896	16853492	ID=MS.gene72784.t1;Parent=MS.gene72784
chr5.1	exon	16853492	16853896	16853492	ID=MS.gene72784.t1.exon1;Parent=MS.gene72784.t1
chr5.1	CDS	16853492	16853896	16853492	ID=cds.MS.gene72784.t1;Parent=MS.gene72784.t1

Gene Sequence

>MS.gene72784

ATGGCTTCACAACTTGTTAGTGATGTCAAATGCCAAACACTAATGCATTGTGCAGCTTCTTATGGTGAAAGAGGAAGCAAACCAACACCATCTCGTCGCAAAAGCTATGGCTACTGTCGAGTAGAGAATAGCATCGTCTACCCTGAAGAAAGCAACTTCAAAGAACAAAAAAACAAGGGGTCATCACATGAAAAAGGTGTAAAACGTAACACAAATCTAGCTCAAGCACAAAAGCTTCACAGGTTGGGATTCTCTTACATTGCAACATCTTTTCTTTACATGGTAATTAAGGTTAAAGCATTTTACAATGGTTTCCTTGGAGATGTTGCTAGTGAATCAAGGATGATGGGAATTGATGCACCAATGGCAGAACCATATTTTTCCGTTCCAGTTATTCCAAATTAA

Protein sequence

>MS.gene72784.t1

MASQLVSDVKCQTLMHCAASYGERGSKPTPSRRKSYGYCRVENSIVYPEESNFKEQKNKGSSHEKGVKRNTNLAQAQKLHRLGFSYIATSFLYMVIKVKAFYNGFLGDVASESRMMGIDAPMAEPYFSVPVIPN