Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004900 | Msa0011010 | 0.806567 | 7.726380e-50 | -8.615850e-47 |
| Msa0004900 | Msa0024650 | 0.811648 | 6.301964e-51 | -8.615850e-47 |
| Msa0004900 | Msa0025560 | 0.800755 | 1.241711e-48 | -8.615850e-47 |
| Msa0004900 | Msa0038010 | 0.811039 | 8.546634e-51 | -8.615850e-47 |
| Msa0004900 | Msa0048380 | 0.814080 | 1.848621e-51 | -8.615850e-47 |
| Msa0004900 | Msa0051810 | 0.885762 | 6.146302e-72 | -8.615850e-47 |
| Msa0004900 | Msa0073110 | 0.801402 | 9.158323e-49 | -8.615850e-47 |
| Msa0004900 | Msa0074620 | 0.801999 | 6.906558e-49 | -8.615850e-47 |
| Msa0004900 | Msa0098380 | 0.802326 | 5.915918e-49 | -8.615850e-47 |
| Msa0004900 | Msa0120450 | 0.805272 | 1.446049e-49 | -8.615850e-47 |
| Msa0004900 | Msa0121300 | 0.800078 | 1.705639e-48 | -8.615850e-47 |
| Msa0004900 | Msa0121320 | 0.801776 | 7.674284e-49 | -8.615850e-47 |
| Msa0004900 | Msa0132080 | -0.803672 | 3.117936e-49 | -8.615850e-47 |
| Msa0004900 | Msa0132250 | 0.802979 | 4.339247e-49 | -8.615850e-47 |
| Msa0004900 | Msa0145030 | 0.884648 | 1.602714e-71 | -8.615850e-47 |
| Msa0004900 | Msa0150000 | 0.826431 | 2.722494e-54 | -8.615850e-47 |
| Msa0004900 | Msa0154750 | 0.802305 | 5.976005e-49 | -8.615850e-47 |
| Msa0004900 | Msa0163690 | 0.807600 | 4.669438e-50 | -8.615850e-47 |
| Msa0004900 | Msa0170990 | 0.806056 | 9.900481e-50 | -8.615850e-47 |
| Msa0004900 | Msa0175060 | 0.802286 | 6.030353e-49 | -8.615850e-47 |
| Msa0004900 | Msa0191100 | 0.805665 | 1.195981e-49 | -8.615850e-47 |
| Msa0004900 | Msa0219810 | 0.818611 | 1.791047e-52 | -8.615850e-47 |
| Msa0004900 | Msa0224870 | 0.808143 | 3.580198e-50 | -8.615850e-47 |
| Msa0004900 | Msa0230920 | 0.824616 | 7.330923e-54 | -8.615850e-47 |
| Msa0004900 | Msa0248320 | 0.816238 | 6.129047e-52 | -8.615850e-47 |
| Msa0004900 | Msa0258740 | 0.810088 | 1.371459e-50 | -8.615850e-47 |
| Msa0004900 | Msa0280160 | 0.800862 | 1.180993e-48 | -8.615850e-47 |
| Msa0004900 | Msa0303900 | 0.814964 | 1.177960e-51 | -8.615850e-47 |
| Msa0004900 | Msa0311540 | 0.819931 | 8.961666e-53 | -8.615850e-47 |
| Msa0004900 | Msa0323090 | 0.801300 | 9.608847e-49 | -8.615850e-47 |
| Msa0004900 | Msa0333770 | 0.819023 | 1.443399e-52 | -8.615850e-47 |
| Msa0004900 | Msa0354550 | 0.829051 | 6.388723e-55 | -8.615850e-47 |
| Msa0004900 | Msa0357470 | 0.819303 | 1.246495e-52 | -8.615850e-47 |
| Msa0004900 | Msa0357510 | 0.827145 | 1.839407e-54 | -8.615850e-47 |
| Msa0004900 | Msa0357530 | 0.812903 | 3.353522e-51 | -8.615850e-47 |
| Msa0004900 | Msa0357550 | 0.834442 | 2.991039e-56 | -8.615850e-47 |
| Msa0004900 | Msa0357560 | 0.844023 | 9.770633e-59 | -8.615850e-47 |
| Msa0004900 | Msa0364030 | -0.813571 | 2.392341e-51 | -8.615850e-47 |
| Msa0004900 | Msa0401420 | 0.819288 | 1.256384e-52 | -8.615850e-47 |
| Msa0004900 | Msa0401500 | 0.816157 | 6.390879e-52 | -8.615850e-47 |
| Msa0004900 | Msa0403740 | -0.813289 | 2.760187e-51 | -8.615850e-47 |
| Msa0004900 | Msa0412580 | -0.800103 | 1.686250e-48 | -8.615850e-47 |
| Msa0004900 | Msa0418230 | 0.813566 | 2.398813e-51 | -8.615850e-47 |
| Msa0004900 | Msa0456450 | -0.808769 | 2.631588e-50 | -8.615850e-47 |
| Msa0004900 | Msa0459930 | 0.806426 | 8.273812e-50 | -8.615850e-47 |
| Msa0004900 | Msa0464620 | 0.826057 | 3.342160e-54 | -8.615850e-47 |
| Msa0004900 | Msa0490060 | 0.802047 | 6.752739e-49 | -8.615850e-47 |
| Msa0004900 | Msa0496070 | 0.805021 | 1.632524e-49 | -8.615850e-47 |
| Msa0004900 | Msa0497680 | 0.802131 | 6.490149e-49 | -8.615850e-47 |
| Msa0004900 | Msa0510050 | 0.814297 | 1.654891e-51 | -8.615850e-47 |
| Msa0004900 | Msa0540640 | 0.826522 | 2.590378e-54 | -8.615850e-47 |
| Msa0004900 | Msa0557240 | 0.805026 | 1.627929e-49 | -8.615850e-47 |
| Msa0004900 | Msa0557250 | 0.808065 | 3.719290e-50 | -8.615850e-47 |
| Msa0004900 | Msa0565180 | 0.804294 | 2.314843e-49 | -8.615850e-47 |
| Msa0004900 | Msa0566490 | 0.831679 | 1.455763e-55 | -8.615850e-47 |
| Msa0004900 | Msa0567330 | 0.800120 | 1.672678e-48 | -8.615850e-47 |
| Msa0004900 | Msa0567570 | 0.815083 | 1.108478e-51 | -8.615850e-47 |
| Msa0004900 | Msa0604280 | 0.807777 | 4.283126e-50 | -8.615850e-47 |
| Msa0004900 | Msa0616010 | 0.803610 | 3.211168e-49 | -8.615850e-47 |
| Msa0004900 | Msa0622890 | 0.811121 | 8.203320e-51 | -8.615850e-47 |
| Msa0004900 | Msa0643230 | 0.806066 | 9.854662e-50 | -8.615850e-47 |
| Msa0004900 | Msa0647300 | 0.817446 | 3.283662e-52 | -8.615850e-47 |
| Msa0004900 | Msa0652590 | 0.804110 | 2.528513e-49 | -8.615850e-47 |
| Msa0004900 | Msa0652600 | 0.803881 | 2.820794e-49 | -8.615850e-47 |
| Msa0004900 | Msa0655370 | 0.803629 | 3.181398e-49 | -8.615850e-47 |
| Msa0004900 | Msa0658150 | 0.806692 | 7.272105e-50 | -8.615850e-47 |
| Msa0004900 | Msa0680460 | 0.802382 | 5.762336e-49 | -8.615850e-47 |
| Msa0004900 | Msa0685390 | -0.802188 | 6.317523e-49 | -8.615850e-47 |
| Msa0004900 | Msa0686830 | 0.823325 | 1.471821e-53 | -8.615850e-47 |
| Msa0004900 | Msa0689840 | 0.806197 | 9.245888e-50 | -8.615850e-47 |
| Msa0004900 | Msa0699170 | 0.805179 | 1.512665e-49 | -8.615850e-47 |
| Msa0004900 | Msa0703000 | 0.807321 | 5.352491e-50 | -8.615850e-47 |
| Msa0004900 | Msa0730890 | 0.833934 | 4.008286e-56 | -8.615850e-47 |
| Msa0004900 | Msa0743370 | 0.803484 | 3.410157e-49 | -8.615850e-47 |
| Msa0004900 | Msa0750790 | 0.800586 | 1.344354e-48 | -8.615850e-47 |
| Msa0004900 | Msa0768670 | 0.803951 | 2.728490e-49 | -8.615850e-47 |
| Msa0004900 | Msa0773030 | 0.829848 | 4.091864e-55 | -8.615850e-47 |
| Msa0004900 | Msa0794200 | 0.801374 | 9.278527e-49 | -8.615850e-47 |
| Msa0004900 | Msa0812720 | 0.811641 | 6.324017e-51 | -8.615850e-47 |
| Msa0004900 | Msa0813840 | 0.831095 | 2.027436e-55 | -8.615850e-47 |
| Msa0004900 | Msa0831310 | 0.803441 | 3.481559e-49 | -8.615850e-47 |
| Msa0004900 | Msa0841930 | 0.825937 | 3.569920e-54 | -8.615850e-47 |
| Msa0004900 | Msa0854380 | 0.813122 | 3.003539e-51 | -8.615850e-47 |
| Msa0004900 | Msa0873880 | 0.834018 | 3.820284e-56 | -8.615850e-47 |
| Msa0004900 | Msa0890210 | 0.818906 | 1.534559e-52 | -8.615850e-47 |
| Msa0004900 | Msa0896920 | 0.814178 | 1.758135e-51 | -8.615850e-47 |
| Msa0004900 | Msa0898970 | 0.808517 | 2.978500e-50 | -8.615850e-47 |
| Msa0004900 | Msa0906680 | 0.803060 | 4.174054e-49 | -8.615850e-47 |
| Msa0004900 | Msa0950090 | 0.806632 | 7.485697e-50 | -8.615850e-47 |
| Msa0004900 | Msa0964510 | 0.811141 | 8.119611e-51 | -8.615850e-47 |
| Msa0004900 | Msa0965950 | 0.800824 | 1.202286e-48 | -8.615850e-47 |
| Msa0004900 | Msa0975950 | 0.823765 | 1.161168e-53 | -8.615850e-47 |
| Msa0004900 | Msa0987020 | 0.802252 | 6.127762e-49 | -8.615850e-47 |
| Msa0004900 | Msa1029860 | 0.806975 | 6.333972e-50 | -8.615850e-47 |
| Msa0004900 | Msa1031060 | 0.800417 | 1.455251e-48 | -8.615850e-47 |
| Msa0004900 | Msa1035050 | 0.803740 | 3.017198e-49 | -8.615850e-47 |
| Msa0004900 | Msa1047300 | 0.810425 | 1.160081e-50 | -8.615850e-47 |
| Msa0004900 | Msa1047340 | 0.810999 | 8.715809e-51 | -8.615850e-47 |
| Msa0004900 | Msa1075090 | 0.804401 | 2.198360e-49 | -8.615850e-47 |
| Msa0004900 | Msa1099650 | 0.808037 | 3.771480e-50 | -8.615850e-47 |
| Msa0004900 | Msa1100330 | 0.800464 | 1.423420e-48 | -8.615850e-47 |
| Msa0004900 | Msa1108560 | 0.836809 | 7.527996e-57 | -8.615850e-47 |
| Msa0004900 | Msa1115900 | 0.805626 | 1.218884e-49 | -8.615850e-47 |
| Msa0004900 | Msa1119670 | 0.800258 | 1.567924e-48 | -8.615850e-47 |
| Msa0004900 | Msa1124220 | 0.800375 | 1.484167e-48 | -8.615850e-47 |
| Msa0004900 | Msa1136630 | 0.828990 | 6.609822e-55 | -8.615850e-47 |
| Msa0004900 | Msa1155610 | 0.808947 | 2.411186e-50 | -8.615850e-47 |
| Msa0004900 | Msa1160540 | 0.807356 | 5.262281e-50 | -8.615850e-47 |
| Msa0004900 | Msa1165460 | 0.803025 | 4.244324e-49 | -8.615850e-47 |
| Msa0004900 | Msa1183870 | 0.801527 | 8.632549e-49 | -8.615850e-47 |
| Msa0004900 | Msa1191350 | 0.803519 | 3.353901e-49 | -8.615850e-47 |
| Msa0004900 | Msa1191530 | -0.816457 | 5.476725e-52 | -8.615850e-47 |
| Msa0004900 | Msa1211940 | 0.801388 | 9.220757e-49 | -8.615850e-47 |
| Msa0004900 | Msa1212080 | 0.804530 | 2.067016e-49 | -8.615850e-47 |
| Msa0004900 | Msa1223960 | 0.809175 | 2.154535e-50 | -8.615850e-47 |
| Msa0004900 | Msa1238250 | 0.804132 | 2.501113e-49 | -8.615850e-47 |
| Msa0004900 | Msa1263110 | 0.811206 | 7.862354e-51 | -8.615850e-47 |
| Msa0004900 | Msa1269500 | 0.802712 | 4.924848e-49 | -8.615850e-47 |
| Msa0004900 | Msa1273320 | 0.813019 | 3.164053e-51 | -8.615850e-47 |
| Msa0004900 | Msa1281780 | 0.803476 | 3.423030e-49 | -8.615850e-47 |
| Msa0004900 | Msa1319030 | 0.811456 | 6.937040e-51 | -8.615850e-47 |
| Msa0004900 | Msa1321010 | 0.807603 | 4.663227e-50 | -8.615850e-47 |
| Msa0004900 | Msa1322500 | 0.814388 | 1.580667e-51 | -8.615850e-47 |
| Msa0004900 | Msa1338510 | 0.806010 | 1.012214e-49 | -8.615850e-47 |
| Msa0004900 | Msa1342360 | -0.809466 | 1.865715e-50 | -8.615850e-47 |
| Msa0004900 | Msa1376880 | 0.816724 | 4.770435e-52 | -8.615850e-47 |
| Msa0004900 | Msa1377190 | 0.802477 | 5.507348e-49 | -8.615850e-47 |
| Msa0004900 | Msa1380740 | 0.816424 | 5.568991e-52 | -8.615850e-47 |
| Msa0004900 | Msa1384130 | 0.800635 | 1.313990e-48 | -8.615850e-47 |
| Msa0004900 | Msa1395080 | 0.806555 | 7.772869e-50 | -8.615850e-47 |
| Msa0004900 | Msa1407810 | 0.808284 | 3.340361e-50 | -8.615850e-47 |
| Msa0004900 | Msa1417220 | 0.810964 | 8.871743e-51 | -8.615850e-47 |
| Msa0004900 | Msa1437780 | 0.808750 | 2.657196e-50 | -8.615850e-47 |
| Msa0004900 | Msa1458270 | 0.820870 | 5.457199e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004900 | MtrunA17_Chr1g0153131 | 94.866 | 448 | 19 | 3 | 1 | 446 | 1 | 446 | 0.0 | 839 |
| Msa0004900 | MtrunA17_Chr3g0134171 | 59.149 | 470 | 157 | 11 | 7 | 444 | 3 | 469 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004900 | AT4G06536.1 | 52.071 | 169 | 63 | 3 | 280 | 438 | 3 | 163 | 7.41e-52 | 172 |
| Msa0004900 | AT4G06534.1 | 40.476 | 252 | 114 | 12 | 48 | 283 | 72 | 303 | 3.11e-37 | 140 |
Find 88 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATGATTGTTTCTTTCT+TGG | 0.143166 | 1_1:-7357291 | None:intergenic |
| TCACTATATTGTATTCTTCT+TGG | 0.197085 | 1_1:+7357710 | Msa0004900:CDS |
| GGCTGCAAATATAGACATTA+TGG | 0.216280 | 1_1:+7358367 | Msa0004900:CDS |
| CAAGTGTTGCTTCTGTTATT+AGG | 0.239162 | 1_1:+7357620 | Msa0004900:CDS |
| AAATATAGACATTATGGTTT+TGG | 0.262776 | 1_1:+7358373 | Msa0004900:CDS |
| GCTTCTGATGCTATAGAAAA+TGG | 0.269588 | 1_1:+7357376 | Msa0004900:CDS |
| TAAGTTCCTGGAACTCTTAA+AGG | 0.284979 | 1_1:-7357907 | None:intergenic |
| GAGTTGAACCCTATGCTTCT+AGG | 0.294865 | 1_1:-7357931 | None:intergenic |
| ACCTCCACATGATCCTAAAA+AGG | 0.312462 | 1_1:-7357464 | None:intergenic |
| AGGACTTCTCTGCCTCTTCC+TGG | 0.330949 | 1_1:+7357640 | Msa0004900:CDS |
| GGTGTTCTTTGTGCATTTGC+AGG | 0.344174 | 1_1:-7358428 | None:intergenic |
| AATGGTTCTGTGTTTCTTGA+TGG | 0.346638 | 1_1:+7357955 | Msa0004900:CDS |
| CTTCACATTAAACTCAGAAT+TGG | 0.364848 | 1_1:+7358289 | Msa0004900:CDS |
| GGTGTTCCTTTAAGAGTTCC+AGG | 0.371181 | 1_1:+7357901 | Msa0004900:CDS |
| CATTCCCCTGGTGCTGCACT+TGG | 0.393098 | 1_1:+7358479 | Msa0004900:CDS |
| TGTGGAGGTAGTGATGAATT+TGG | 0.393678 | 1_1:+7357478 | Msa0004900:CDS |
| ATGTTGTCATTAGGATTAAC+AGG | 0.397970 | 1_1:+7357871 | Msa0004900:CDS |
| AGTTGGTAGGAAGAAGAGAA+GGG | 0.406253 | 1_1:+7357746 | Msa0004900:CDS |
| TTGGTTGTGGATTTGATCCT+AGG | 0.407304 | 1_1:+7358252 | Msa0004900:CDS |
| GAAATGAAAGTTGAAGGAAA+AGG | 0.425592 | 1_1:+7357832 | Msa0004900:CDS |
| GTTGAAGAAATGAAAGTTGA+AGG | 0.430549 | 1_1:+7357826 | Msa0004900:CDS |
| ATGCTTCTAGGGTAAGTTCC+TGG | 0.431690 | 1_1:-7357919 | None:intergenic |
| ATACTCAGTGTCCTTATCAT+AGG | 0.434137 | 1_1:+7358676 | Msa0004900:CDS |
| ACCACATGAAAACAAACAAA+AGG | 0.437599 | 1_1:-7357201 | None:intergenic |
| ACAAAAGGAAATAACATCAA+TGG | 0.438406 | 1_1:+7358569 | Msa0004900:CDS |
| TCTATATTTGCAGCCAAAGT+TGG | 0.444908 | 1_1:-7358359 | None:intergenic |
| AAATGAAAGTTGAAGGAAAA+GGG | 0.445757 | 1_1:+7357833 | Msa0004900:CDS |
| ACACTTGTAGAACTGTTGTT+TGG | 0.449080 | 1_1:-7357604 | None:intergenic |
| ATAGCATCAGAAGCTAGATA+TGG | 0.452505 | 1_1:-7357367 | None:intergenic |
| GAGTTGGTAGGAAGAAGAGA+AGG | 0.458063 | 1_1:+7357745 | Msa0004900:CDS |
| TATGATAAGGACACTGAGTA+TGG | 0.460716 | 1_1:-7358674 | None:intergenic |
| CAAAAGGAAATAACATCAAT+GGG | 0.463014 | 1_1:+7358570 | Msa0004900:CDS |
| GAAGATATTTCAAATGATGA+AGG | 0.474237 | 1_1:+7357790 | Msa0004900:CDS |
| ATATTGTATTCTTCTTGGAA+TGG | 0.474728 | 1_1:+7357715 | Msa0004900:CDS |
| GAATCTGTGATGTTGTCATT+AGG | 0.478583 | 1_1:+7357862 | Msa0004900:CDS |
| AAAATGCGGCTGAAATAAGC+TGG | 0.480947 | 1_1:+7357506 | Msa0004900:CDS |
| GAAGAAAAGATTTGTTCAGC+TGG | 0.481259 | 1_1:+7357335 | Msa0004900:CDS |
| ACTGATACAGTAATTGGTTG+TGG | 0.482195 | 1_1:+7358239 | Msa0004900:CDS |
| TCATTAGGATTAACAGGTGG+AGG | 0.490348 | 1_1:+7357877 | Msa0004900:CDS |
| AATCTGAATTGATGAGTCAA+TGG | 0.490494 | 1_1:+7357128 | None:intergenic |
| GGTGCTATGAAGCATGGATT+TGG | 0.494107 | 1_1:-7358449 | None:intergenic |
| GCTATTATAGCAGCCTTAGT+TGG | 0.494202 | 1_1:+7357166 | Msa0004900:CDS |
| CAGAATCGATCGGCAACAAA+AGG | 0.495388 | 1_1:+7358554 | Msa0004900:CDS |
| GTGGGAACTGATACAGTAAT+TGG | 0.504282 | 1_1:+7358233 | Msa0004900:CDS |
| ATCAAGAAACACAGAACCAT+TGG | 0.508071 | 1_1:-7357953 | None:intergenic |
| ATTTCAAAATAAGCTTCTTG+TGG | 0.514560 | 1_1:-7357688 | None:intergenic |
| AATGGAGATTATGAGTTGGT+AGG | 0.514637 | 1_1:+7357733 | Msa0004900:CDS |
| TCAAATCCAAGTGCAGCACC+AGG | 0.515251 | 1_1:-7358485 | None:intergenic |
| CACTCCACTATGTCCAACTT+TGG | 0.516191 | 1_1:+7358346 | Msa0004900:CDS |
| AGTTGAACCCTATGCTTCTA+GGG | 0.519371 | 1_1:-7357930 | None:intergenic |
| GCAGCCAAAGTTGGACATAG+TGG | 0.521249 | 1_1:-7358350 | None:intergenic |
| ACTTGGATTTGATGACAGTA+AGG | 0.526846 | 1_1:+7358496 | Msa0004900:CDS |
| GGTTGAAATACATCCAACTA+AGG | 0.537760 | 1_1:-7357179 | None:intergenic |
| CAGTAAGGAACTATTCTCCA+TGG | 0.538917 | 1_1:+7358511 | Msa0004900:CDS |
| GGAACTTACCCTAGAAGCAT+AGG | 0.542063 | 1_1:+7357922 | Msa0004900:CDS |
| TGACTTATTTGAAATTGTGT+TGG | 0.550933 | 1_1:+7358634 | Msa0004900:CDS |
| AAGCTTCTTGTGGAAATGCA+TGG | 0.553279 | 1_1:-7357678 | None:intergenic |
| GAGTGCTGAATTCCTCTGAT+TGG | 0.561029 | 1_1:-7358328 | None:intergenic |
| CCACATGAAAACAAACAAAA+GGG | 0.561806 | 1_1:-7357200 | None:intergenic |
| GCACCACTTGTACATTCCCC+TGG | 0.572742 | 1_1:+7358467 | Msa0004900:CDS |
| TTAGGATTAACAGGTGGAGG+AGG | 0.573181 | 1_1:+7357880 | Msa0004900:CDS |
| CGGAGAATCAATCCTTCCCA+TGG | 0.577675 | 1_1:-7358528 | None:intergenic |
| TTATTTGAAATTGTGTTGGA+TGG | 0.586901 | 1_1:+7358638 | Msa0004900:CDS |
| AGCATAGGGTTCAACTCCAA+TGG | 0.590032 | 1_1:+7357937 | Msa0004900:CDS |
| GATCAAAGAAGAAAGAGCAA+AGG | 0.592962 | 1_1:+7357313 | Msa0004900:CDS |
| TTGGAATGGAGATTATGAGT+TGG | 0.595467 | 1_1:+7357729 | Msa0004900:CDS |
| GTTGGTAGGAAGAAGAGAAG+GGG | 0.599543 | 1_1:+7357747 | Msa0004900:CDS |
| GTCTGAGAAAGCACAGTGGG+TGG | 0.603653 | 1_1:+7358214 | Msa0004900:CDS |
| GAACTTACCCTAGAAGCATA+GGG | 0.603836 | 1_1:+7357923 | Msa0004900:CDS |
| CTGATGCTATAGAAAATGGA+TGG | 0.609254 | 1_1:+7357380 | Msa0004900:CDS |
| CAGAAGATAAGACTCAATCC+TGG | 0.610487 | 1_1:+7357559 | Msa0004900:CDS |
| TGAGTCTGAGAAAGCACAGT+GGG | 0.611118 | 1_1:+7358211 | Msa0004900:CDS |
| AGGAACTATTCTCCATGGGA+AGG | 0.613811 | 1_1:+7358516 | Msa0004900:CDS |
| AGTAAGGAACTATTCTCCAT+GGG | 0.620026 | 1_1:+7358512 | Msa0004900:CDS |
| TTCTCCGTGGCAGAATCGAT+CGG | 0.625199 | 1_1:+7358544 | Msa0004900:CDS |
| ACAAGTGGTGCTATGAAGCA+TGG | 0.628856 | 1_1:-7358455 | None:intergenic |
| ATAAGCTGGGAAGTGTGTCA+AGG | 0.639438 | 1_1:+7357520 | Msa0004900:CDS |
| TCTGAGAAAGCACAGTGGGT+GGG | 0.640383 | 1_1:+7358215 | Msa0004900:CDS |
| TGTAATCTACTGCCAATCAG+AGG | 0.648989 | 1_1:+7358316 | Msa0004900:CDS |
| GCACCAGGGGAATGTACAAG+TGG | 0.649933 | 1_1:-7358470 | None:intergenic |
| CAAATCCAAGTGCAGCACCA+GGG | 0.652135 | 1_1:-7358484 | None:intergenic |
| AAATGCGGCTGAAATAAGCT+GGG | 0.652323 | 1_1:+7357507 | Msa0004900:CDS |
| AAATCCAAGTGCAGCACCAG+GGG | 0.660453 | 1_1:-7358483 | None:intergenic |
| GTTGCCGATCGATTCTGCCA+CGG | 0.661063 | 1_1:-7358548 | None:intergenic |
| TTGTCATTAGGATTAACAGG+TGG | 0.691058 | 1_1:+7357874 | Msa0004900:CDS |
| TGGGAAGGATTGATTCTCCG+TGG | 0.703647 | 1_1:+7358531 | Msa0004900:CDS |
| TGAATTTGGAAGAGAAAATG+CGG | 0.744058 | 1_1:+7357492 | Msa0004900:CDS |
| TTGAGTCTGAGAAAGCACAG+TGG | 0.792356 | 1_1:+7358210 | Msa0004900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATGTAATGTTTTCAAA+TGG | - | chr1_1:7358022-7358041 | None:intergenic | 15.0% |
| !! | TACATAATTTACATTTCTAA+AGG | + | chr1_1:7358033-7358052 | Msa0004900:intron | 15.0% |
| !!! | AATTATGTAATGTTTTCAAA+TGG | - | chr1_1:7358022-7358041 | None:intergenic | 15.0% |
| !! | TACATAATTTACATTTCTAA+AGG | + | chr1_1:7358033-7358052 | Msa0004900:intron | 15.0% |
| !! | AAATAAAATGTACATGACAA+GGG | - | chr1_1:7357998-7358017 | None:intergenic | 20.0% |
| !! | TAAATAAAATGTACATGACA+AGG | - | chr1_1:7357999-7358018 | None:intergenic | 20.0% |
| !! | TGACATATAATTGTAACATT+TGG | + | chr1_1:7358166-7358185 | Msa0004900:intron | 20.0% |
| !!! | AAATATAGACATTATGGTTT+TGG | + | chr1_1:7358373-7358392 | Msa0004900:CDS | 20.0% |
| !!! | ATTATGGTTTTGGTTAATTT+TGG | + | chr1_1:7358383-7358402 | Msa0004900:CDS | 20.0% |
| !! | AAATAAAATGTACATGACAA+GGG | - | chr1_1:7357998-7358017 | None:intergenic | 20.0% |
| !! | TAAATAAAATGTACATGACA+AGG | - | chr1_1:7357999-7358018 | None:intergenic | 20.0% |
| !! | TGACATATAATTGTAACATT+TGG | + | chr1_1:7358166-7358185 | Msa0004900:intron | 20.0% |
| !!! | AAATATAGACATTATGGTTT+TGG | + | chr1_1:7358373-7358392 | Msa0004900:CDS | 20.0% |
| !!! | ATTATGGTTTTGGTTAATTT+TGG | + | chr1_1:7358383-7358402 | Msa0004900:CDS | 20.0% |
| !! | CAAAATGATTGTTTCTTTCT+TGG | - | chr1_1:7357294-7357313 | None:intergenic | 25.0% |
| !! | AAAAAACACTCTTTTAAACC+AGG | - | chr1_1:7357580-7357599 | None:intergenic | 25.0% |
| ! | ATTTCAAAATAAGCTTCTTG+TGG | - | chr1_1:7357691-7357710 | None:intergenic | 25.0% |
| ! | TCACTATATTGTATTCTTCT+TGG | + | chr1_1:7357710-7357729 | Msa0004900:CDS | 25.0% |
| ! | ATATTGTATTCTTCTTGGAA+TGG | + | chr1_1:7357715-7357734 | Msa0004900:CDS | 25.0% |
| ! | GAAGATATTTCAAATGATGA+AGG | + | chr1_1:7357790-7357809 | Msa0004900:CDS | 25.0% |
| ! | AAATGAAAGTTGAAGGAAAA+GGG | + | chr1_1:7357833-7357852 | Msa0004900:CDS | 25.0% |
| ! | AATAAAATGTACATGACAAG+GGG | - | chr1_1:7357997-7358016 | None:intergenic | 25.0% |
| !! | TTCTAAAGGTCAAAATATGT+TGG | + | chr1_1:7358047-7358066 | Msa0004900:intron | 25.0% |
| ! | ACAAAAGGAAATAACATCAA+TGG | + | chr1_1:7358569-7358588 | Msa0004900:CDS | 25.0% |
| ! | CAAAAGGAAATAACATCAAT+GGG | + | chr1_1:7358570-7358589 | Msa0004900:CDS | 25.0% |
| !! | TGACTTATTTGAAATTGTGT+TGG | + | chr1_1:7358634-7358653 | Msa0004900:CDS | 25.0% |
| !! | TTATTTGAAATTGTGTTGGA+TGG | + | chr1_1:7358638-7358657 | Msa0004900:CDS | 25.0% |
| !! | CAAAATGATTGTTTCTTTCT+TGG | - | chr1_1:7357294-7357313 | None:intergenic | 25.0% |
| !! | AAAAAACACTCTTTTAAACC+AGG | - | chr1_1:7357580-7357599 | None:intergenic | 25.0% |
| ! | ATTTCAAAATAAGCTTCTTG+TGG | - | chr1_1:7357691-7357710 | None:intergenic | 25.0% |
| ! | TCACTATATTGTATTCTTCT+TGG | + | chr1_1:7357710-7357729 | Msa0004900:CDS | 25.0% |
| ! | ATATTGTATTCTTCTTGGAA+TGG | + | chr1_1:7357715-7357734 | Msa0004900:CDS | 25.0% |
| ! | GAAGATATTTCAAATGATGA+AGG | + | chr1_1:7357790-7357809 | Msa0004900:CDS | 25.0% |
| ! | AAATGAAAGTTGAAGGAAAA+GGG | + | chr1_1:7357833-7357852 | Msa0004900:CDS | 25.0% |
| ! | AATAAAATGTACATGACAAG+GGG | - | chr1_1:7357997-7358016 | None:intergenic | 25.0% |
| !! | TTCTAAAGGTCAAAATATGT+TGG | + | chr1_1:7358047-7358066 | Msa0004900:intron | 25.0% |
| ! | ACAAAAGGAAATAACATCAA+TGG | + | chr1_1:7358569-7358588 | Msa0004900:CDS | 25.0% |
| ! | CAAAAGGAAATAACATCAAT+GGG | + | chr1_1:7358570-7358589 | Msa0004900:CDS | 25.0% |
| !! | TGACTTATTTGAAATTGTGT+TGG | + | chr1_1:7358634-7358653 | Msa0004900:CDS | 25.0% |
| !! | TTATTTGAAATTGTGTTGGA+TGG | + | chr1_1:7358638-7358657 | Msa0004900:CDS | 25.0% |
| CCACATGAAAACAAACAAAA+GGG | - | chr1_1:7357203-7357222 | None:intergenic | 30.0% | |
| ACCACATGAAAACAAACAAA+AGG | - | chr1_1:7357204-7357223 | None:intergenic | 30.0% | |
| !! | TTTTGTTTGTTTTCATGTGG+TGG | + | chr1_1:7357203-7357222 | Msa0004900:CDS | 30.0% |
| ! | TCAACTTCATCAACCTTTTT+AGG | + | chr1_1:7357451-7357470 | Msa0004900:CDS | 30.0% |
| TGAATTTGGAAGAGAAAATG+CGG | + | chr1_1:7357492-7357511 | Msa0004900:CDS | 30.0% | |
| GTTGAAGAAATGAAAGTTGA+AGG | + | chr1_1:7357826-7357845 | Msa0004900:CDS | 30.0% | |
| GAAATGAAAGTTGAAGGAAA+AGG | + | chr1_1:7357832-7357851 | Msa0004900:CDS | 30.0% | |
| ATGTTGTCATTAGGATTAAC+AGG | + | chr1_1:7357871-7357890 | Msa0004900:CDS | 30.0% | |
| ATAAAATGTACATGACAAGG+GGG | - | chr1_1:7357996-7358015 | None:intergenic | 30.0% | |
| GTCAAAATATGTTGGTCAAT+AGG | + | chr1_1:7358055-7358074 | Msa0004900:intron | 30.0% | |
| TAATTGTAACATTTGGTCAC+AGG | + | chr1_1:7358173-7358192 | Msa0004900:intron | 30.0% | |
| ! | AAGAAAACTTTCTTTTGCCT+AGG | - | chr1_1:7358272-7358291 | None:intergenic | 30.0% |
| CTTCACATTAAACTCAGAAT+TGG | + | chr1_1:7358289-7358308 | Msa0004900:CDS | 30.0% | |
| CCACATGAAAACAAACAAAA+GGG | - | chr1_1:7357203-7357222 | None:intergenic | 30.0% | |
| ACCACATGAAAACAAACAAA+AGG | - | chr1_1:7357204-7357223 | None:intergenic | 30.0% | |
| !! | TTTTGTTTGTTTTCATGTGG+TGG | + | chr1_1:7357203-7357222 | Msa0004900:CDS | 30.0% |
| ! | TCAACTTCATCAACCTTTTT+AGG | + | chr1_1:7357451-7357470 | Msa0004900:CDS | 30.0% |
| TGAATTTGGAAGAGAAAATG+CGG | + | chr1_1:7357492-7357511 | Msa0004900:CDS | 30.0% | |
| GTTGAAGAAATGAAAGTTGA+AGG | + | chr1_1:7357826-7357845 | Msa0004900:CDS | 30.0% | |
| GAAATGAAAGTTGAAGGAAA+AGG | + | chr1_1:7357832-7357851 | Msa0004900:CDS | 30.0% | |
| ATGTTGTCATTAGGATTAAC+AGG | + | chr1_1:7357871-7357890 | Msa0004900:CDS | 30.0% | |
| ATAAAATGTACATGACAAGG+GGG | - | chr1_1:7357996-7358015 | None:intergenic | 30.0% | |
| GTCAAAATATGTTGGTCAAT+AGG | + | chr1_1:7358055-7358074 | Msa0004900:intron | 30.0% | |
| TAATTGTAACATTTGGTCAC+AGG | + | chr1_1:7358173-7358192 | Msa0004900:intron | 30.0% | |
| ! | AAGAAAACTTTCTTTTGCCT+AGG | - | chr1_1:7358272-7358291 | None:intergenic | 30.0% |
| CTTCACATTAAACTCAGAAT+TGG | + | chr1_1:7358289-7358308 | Msa0004900:CDS | 30.0% | |
| GGTTGAAATACATCCAACTA+AGG | - | chr1_1:7357182-7357201 | None:intergenic | 35.0% | |
| !! | CCCTTTTGTTTGTTTTCATG+TGG | + | chr1_1:7357200-7357219 | Msa0004900:CDS | 35.0% |
| GATCAAAGAAGAAAGAGCAA+AGG | + | chr1_1:7357313-7357332 | Msa0004900:CDS | 35.0% | |
| ! | GAAGAAAAGATTTGTTCAGC+TGG | + | chr1_1:7357335-7357354 | Msa0004900:CDS | 35.0% |
| ATAGCATCAGAAGCTAGATA+TGG | - | chr1_1:7357370-7357389 | None:intergenic | 35.0% | |
| GCTTCTGATGCTATAGAAAA+TGG | + | chr1_1:7357376-7357395 | Msa0004900:CDS | 35.0% | |
| CTGATGCTATAGAAAATGGA+TGG | + | chr1_1:7357380-7357399 | Msa0004900:CDS | 35.0% | |
| !!! | TCAACCTTTTTAGGATCATG+TGG | + | chr1_1:7357460-7357479 | Msa0004900:CDS | 35.0% |
| ACACTTGTAGAACTGTTGTT+TGG | - | chr1_1:7357607-7357626 | None:intergenic | 35.0% | |
| !! | CAAGTGTTGCTTCTGTTATT+AGG | + | chr1_1:7357620-7357639 | Msa0004900:CDS | 35.0% |
| TTGGAATGGAGATTATGAGT+TGG | + | chr1_1:7357729-7357748 | Msa0004900:CDS | 35.0% | |
| !! | AATGGAGATTATGAGTTGGT+AGG | + | chr1_1:7357733-7357752 | Msa0004900:CDS | 35.0% |
| GAATCTGTGATGTTGTCATT+AGG | + | chr1_1:7357862-7357881 | Msa0004900:CDS | 35.0% | |
| TTGTCATTAGGATTAACAGG+TGG | + | chr1_1:7357874-7357893 | Msa0004900:CDS | 35.0% | |
| TAAGTTCCTGGAACTCTTAA+AGG | - | chr1_1:7357910-7357929 | None:intergenic | 35.0% | |
| ATCAAGAAACACAGAACCAT+TGG | - | chr1_1:7357956-7357975 | None:intergenic | 35.0% | |
| ! | AATGGTTCTGTGTTTCTTGA+TGG | + | chr1_1:7357955-7357974 | Msa0004900:CDS | 35.0% |
| ACTGATACAGTAATTGGTTG+TGG | + | chr1_1:7358239-7358258 | Msa0004900:CDS | 35.0% | |
| TCTATATTTGCAGCCAAAGT+TGG | - | chr1_1:7358362-7358381 | None:intergenic | 35.0% | |
| GGCTGCAAATATAGACATTA+TGG | + | chr1_1:7358367-7358386 | Msa0004900:CDS | 35.0% | |
| ! | ACTTGGATTTGATGACAGTA+AGG | + | chr1_1:7358496-7358515 | Msa0004900:CDS | 35.0% |
| AGTAAGGAACTATTCTCCAT+GGG | + | chr1_1:7358512-7358531 | Msa0004900:CDS | 35.0% | |
| TATGATAAGGACACTGAGTA+TGG | - | chr1_1:7358677-7358696 | None:intergenic | 35.0% | |
| GGTTGAAATACATCCAACTA+AGG | - | chr1_1:7357182-7357201 | None:intergenic | 35.0% | |
| !! | CCCTTTTGTTTGTTTTCATG+TGG | + | chr1_1:7357200-7357219 | Msa0004900:CDS | 35.0% |
| GATCAAAGAAGAAAGAGCAA+AGG | + | chr1_1:7357313-7357332 | Msa0004900:CDS | 35.0% | |
| ! | GAAGAAAAGATTTGTTCAGC+TGG | + | chr1_1:7357335-7357354 | Msa0004900:CDS | 35.0% |
| ATAGCATCAGAAGCTAGATA+TGG | - | chr1_1:7357370-7357389 | None:intergenic | 35.0% | |
| GCTTCTGATGCTATAGAAAA+TGG | + | chr1_1:7357376-7357395 | Msa0004900:CDS | 35.0% | |
| CTGATGCTATAGAAAATGGA+TGG | + | chr1_1:7357380-7357399 | Msa0004900:CDS | 35.0% | |
| !!! | TCAACCTTTTTAGGATCATG+TGG | + | chr1_1:7357460-7357479 | Msa0004900:CDS | 35.0% |
| ACACTTGTAGAACTGTTGTT+TGG | - | chr1_1:7357607-7357626 | None:intergenic | 35.0% | |
| !! | CAAGTGTTGCTTCTGTTATT+AGG | + | chr1_1:7357620-7357639 | Msa0004900:CDS | 35.0% |
| TTGGAATGGAGATTATGAGT+TGG | + | chr1_1:7357729-7357748 | Msa0004900:CDS | 35.0% | |
| !! | AATGGAGATTATGAGTTGGT+AGG | + | chr1_1:7357733-7357752 | Msa0004900:CDS | 35.0% |
| GAATCTGTGATGTTGTCATT+AGG | + | chr1_1:7357862-7357881 | Msa0004900:CDS | 35.0% | |
| TTGTCATTAGGATTAACAGG+TGG | + | chr1_1:7357874-7357893 | Msa0004900:CDS | 35.0% | |
| TAAGTTCCTGGAACTCTTAA+AGG | - | chr1_1:7357910-7357929 | None:intergenic | 35.0% | |
| ATCAAGAAACACAGAACCAT+TGG | - | chr1_1:7357956-7357975 | None:intergenic | 35.0% | |
| ! | AATGGTTCTGTGTTTCTTGA+TGG | + | chr1_1:7357955-7357974 | Msa0004900:CDS | 35.0% |
| ACTGATACAGTAATTGGTTG+TGG | + | chr1_1:7358239-7358258 | Msa0004900:CDS | 35.0% | |
| TCTATATTTGCAGCCAAAGT+TGG | - | chr1_1:7358362-7358381 | None:intergenic | 35.0% | |
| GGCTGCAAATATAGACATTA+TGG | + | chr1_1:7358367-7358386 | Msa0004900:CDS | 35.0% | |
| ! | ACTTGGATTTGATGACAGTA+AGG | + | chr1_1:7358496-7358515 | Msa0004900:CDS | 35.0% |
| AGTAAGGAACTATTCTCCAT+GGG | + | chr1_1:7358512-7358531 | Msa0004900:CDS | 35.0% | |
| TATGATAAGGACACTGAGTA+TGG | - | chr1_1:7358677-7358696 | None:intergenic | 35.0% | |
| GCTATTATAGCAGCCTTAGT+TGG | + | chr1_1:7357166-7357185 | Msa0004900:CDS | 40.0% | |
| !!! | ACCTTTTTAGGATCATGTGG+AGG | + | chr1_1:7357463-7357482 | Msa0004900:CDS | 40.0% |
| ACCTCCACATGATCCTAAAA+AGG | - | chr1_1:7357467-7357486 | None:intergenic | 40.0% | |
| TGTGGAGGTAGTGATGAATT+TGG | + | chr1_1:7357478-7357497 | Msa0004900:CDS | 40.0% | |
| AAAATGCGGCTGAAATAAGC+TGG | + | chr1_1:7357506-7357525 | Msa0004900:CDS | 40.0% | |
| AAATGCGGCTGAAATAAGCT+GGG | + | chr1_1:7357507-7357526 | Msa0004900:CDS | 40.0% | |
| CAGAAGATAAGACTCAATCC+TGG | + | chr1_1:7357559-7357578 | Msa0004900:CDS | 40.0% | |
| AATGCATGGTTCCCCAAAAA+AGG | - | chr1_1:7357667-7357686 | None:intergenic | 40.0% | |
| AAGCTTCTTGTGGAAATGCA+TGG | - | chr1_1:7357681-7357700 | None:intergenic | 40.0% | |
| !! | AGTTGGTAGGAAGAAGAGAA+GGG | + | chr1_1:7357746-7357765 | Msa0004900:CDS | 40.0% |
| TCATTAGGATTAACAGGTGG+AGG | + | chr1_1:7357877-7357896 | Msa0004900:CDS | 40.0% | |
| ! | GAACTTACCCTAGAAGCATA+GGG | + | chr1_1:7357923-7357942 | Msa0004900:CDS | 40.0% |
| AGTTGAACCCTATGCTTCTA+GGG | - | chr1_1:7357933-7357952 | None:intergenic | 40.0% | |
| GTGGGAACTGATACAGTAAT+TGG | + | chr1_1:7358233-7358252 | Msa0004900:CDS | 40.0% | |
| TTGGTTGTGGATTTGATCCT+AGG | + | chr1_1:7358252-7358271 | Msa0004900:CDS | 40.0% | |
| TGTAATCTACTGCCAATCAG+AGG | + | chr1_1:7358316-7358335 | Msa0004900:CDS | 40.0% | |
| CAGTAAGGAACTATTCTCCA+TGG | + | chr1_1:7358511-7358530 | Msa0004900:CDS | 40.0% | |
| GCTATTATAGCAGCCTTAGT+TGG | + | chr1_1:7357166-7357185 | Msa0004900:CDS | 40.0% | |
| !!! | ACCTTTTTAGGATCATGTGG+AGG | + | chr1_1:7357463-7357482 | Msa0004900:CDS | 40.0% |
| ACCTCCACATGATCCTAAAA+AGG | - | chr1_1:7357467-7357486 | None:intergenic | 40.0% | |
| TGTGGAGGTAGTGATGAATT+TGG | + | chr1_1:7357478-7357497 | Msa0004900:CDS | 40.0% | |
| AAAATGCGGCTGAAATAAGC+TGG | + | chr1_1:7357506-7357525 | Msa0004900:CDS | 40.0% | |
| AAATGCGGCTGAAATAAGCT+GGG | + | chr1_1:7357507-7357526 | Msa0004900:CDS | 40.0% | |
| CAGAAGATAAGACTCAATCC+TGG | + | chr1_1:7357559-7357578 | Msa0004900:CDS | 40.0% | |
| AATGCATGGTTCCCCAAAAA+AGG | - | chr1_1:7357667-7357686 | None:intergenic | 40.0% | |
| AAGCTTCTTGTGGAAATGCA+TGG | - | chr1_1:7357681-7357700 | None:intergenic | 40.0% | |
| !! | AGTTGGTAGGAAGAAGAGAA+GGG | + | chr1_1:7357746-7357765 | Msa0004900:CDS | 40.0% |
| TCATTAGGATTAACAGGTGG+AGG | + | chr1_1:7357877-7357896 | Msa0004900:CDS | 40.0% | |
| ! | GAACTTACCCTAGAAGCATA+GGG | + | chr1_1:7357923-7357942 | Msa0004900:CDS | 40.0% |
| AGTTGAACCCTATGCTTCTA+GGG | - | chr1_1:7357933-7357952 | None:intergenic | 40.0% | |
| GTGGGAACTGATACAGTAAT+TGG | + | chr1_1:7358233-7358252 | Msa0004900:CDS | 40.0% | |
| TTGGTTGTGGATTTGATCCT+AGG | + | chr1_1:7358252-7358271 | Msa0004900:CDS | 40.0% | |
| TGTAATCTACTGCCAATCAG+AGG | + | chr1_1:7358316-7358335 | Msa0004900:CDS | 40.0% | |
| CAGTAAGGAACTATTCTCCA+TGG | + | chr1_1:7358511-7358530 | Msa0004900:CDS | 40.0% | |
| ! | ATAAGCTGGGAAGTGTGTCA+AGG | + | chr1_1:7357520-7357539 | Msa0004900:CDS | 45.0% |
| !!! | CCTCTTCCTGGTCCTTTTTT+GGG | + | chr1_1:7357652-7357671 | Msa0004900:CDS | 45.0% |
| !!! | CTCTTCCTGGTCCTTTTTTG+GGG | + | chr1_1:7357653-7357672 | Msa0004900:CDS | 45.0% |
| !! | GAGTTGGTAGGAAGAAGAGA+AGG | + | chr1_1:7357745-7357764 | Msa0004900:CDS | 45.0% |
| ! | GTTGGTAGGAAGAAGAGAAG+GGG | + | chr1_1:7357747-7357766 | Msa0004900:CDS | 45.0% |
| TTAGGATTAACAGGTGGAGG+AGG | + | chr1_1:7357880-7357899 | Msa0004900:CDS | 45.0% | |
| ! | GGTGTTCCTTTAAGAGTTCC+AGG | + | chr1_1:7357901-7357920 | Msa0004900:CDS | 45.0% |
| !! | ATGCTTCTAGGGTAAGTTCC+TGG | - | chr1_1:7357922-7357941 | None:intergenic | 45.0% |
| ! | GGAACTTACCCTAGAAGCAT+AGG | + | chr1_1:7357922-7357941 | Msa0004900:CDS | 45.0% |
| GAGTTGAACCCTATGCTTCT+AGG | - | chr1_1:7357934-7357953 | None:intergenic | 45.0% | |
| AGCATAGGGTTCAACTCCAA+TGG | + | chr1_1:7357937-7357956 | Msa0004900:CDS | 45.0% | |
| ! | TTGAGTCTGAGAAAGCACAG+TGG | + | chr1_1:7358210-7358229 | Msa0004900:CDS | 45.0% |
| ! | TGAGTCTGAGAAAGCACAGT+GGG | + | chr1_1:7358211-7358230 | Msa0004900:CDS | 45.0% |
| !! | GAGTGCTGAATTCCTCTGAT+TGG | - | chr1_1:7358331-7358350 | None:intergenic | 45.0% |
| CACTCCACTATGTCCAACTT+TGG | + | chr1_1:7358346-7358365 | Msa0004900:CDS | 45.0% | |
| GGTGTTCTTTGTGCATTTGC+AGG | - | chr1_1:7358431-7358450 | None:intergenic | 45.0% | |
| ! | GGTGCTATGAAGCATGGATT+TGG | - | chr1_1:7358452-7358471 | None:intergenic | 45.0% |
| !! | ACAAGTGGTGCTATGAAGCA+TGG | - | chr1_1:7358458-7358477 | None:intergenic | 45.0% |
| AGGAACTATTCTCCATGGGA+AGG | + | chr1_1:7358516-7358535 | Msa0004900:CDS | 45.0% | |
| CAGAATCGATCGGCAACAAA+AGG | + | chr1_1:7358554-7358573 | Msa0004900:CDS | 45.0% | |
| ! | ATAAGCTGGGAAGTGTGTCA+AGG | + | chr1_1:7357520-7357539 | Msa0004900:CDS | 45.0% |
| !!! | CCTCTTCCTGGTCCTTTTTT+GGG | + | chr1_1:7357652-7357671 | Msa0004900:CDS | 45.0% |
| !!! | CTCTTCCTGGTCCTTTTTTG+GGG | + | chr1_1:7357653-7357672 | Msa0004900:CDS | 45.0% |
| !! | GAGTTGGTAGGAAGAAGAGA+AGG | + | chr1_1:7357745-7357764 | Msa0004900:CDS | 45.0% |
| ! | GTTGGTAGGAAGAAGAGAAG+GGG | + | chr1_1:7357747-7357766 | Msa0004900:CDS | 45.0% |
| TTAGGATTAACAGGTGGAGG+AGG | + | chr1_1:7357880-7357899 | Msa0004900:CDS | 45.0% | |
| ! | GGTGTTCCTTTAAGAGTTCC+AGG | + | chr1_1:7357901-7357920 | Msa0004900:CDS | 45.0% |
| !! | ATGCTTCTAGGGTAAGTTCC+TGG | - | chr1_1:7357922-7357941 | None:intergenic | 45.0% |
| ! | GGAACTTACCCTAGAAGCAT+AGG | + | chr1_1:7357922-7357941 | Msa0004900:CDS | 45.0% |
| GAGTTGAACCCTATGCTTCT+AGG | - | chr1_1:7357934-7357953 | None:intergenic | 45.0% | |
| AGCATAGGGTTCAACTCCAA+TGG | + | chr1_1:7357937-7357956 | Msa0004900:CDS | 45.0% | |
| ! | TTGAGTCTGAGAAAGCACAG+TGG | + | chr1_1:7358210-7358229 | Msa0004900:CDS | 45.0% |
| ! | TGAGTCTGAGAAAGCACAGT+GGG | + | chr1_1:7358211-7358230 | Msa0004900:CDS | 45.0% |
| !! | GAGTGCTGAATTCCTCTGAT+TGG | - | chr1_1:7358331-7358350 | None:intergenic | 45.0% |
| CACTCCACTATGTCCAACTT+TGG | + | chr1_1:7358346-7358365 | Msa0004900:CDS | 45.0% | |
| GGTGTTCTTTGTGCATTTGC+AGG | - | chr1_1:7358431-7358450 | None:intergenic | 45.0% | |
| ! | GGTGCTATGAAGCATGGATT+TGG | - | chr1_1:7358452-7358471 | None:intergenic | 45.0% |
| !! | ACAAGTGGTGCTATGAAGCA+TGG | - | chr1_1:7358458-7358477 | None:intergenic | 45.0% |
| AGGAACTATTCTCCATGGGA+AGG | + | chr1_1:7358516-7358535 | Msa0004900:CDS | 45.0% | |
| CAGAATCGATCGGCAACAAA+AGG | + | chr1_1:7358554-7358573 | Msa0004900:CDS | 45.0% | |
| !!! | GCCTCTTCCTGGTCCTTTTT+TGG | + | chr1_1:7357651-7357670 | Msa0004900:CDS | 50.0% |
| CCCAAAAAAGGACCAGGAAG+AGG | - | chr1_1:7357655-7357674 | None:intergenic | 50.0% | |
| TGGTTCCCCAAAAAAGGACC+AGG | - | chr1_1:7357661-7357680 | None:intergenic | 50.0% | |
| ! | TCTGAGAAAGCACAGTGGGT+GGG | + | chr1_1:7358215-7358234 | Msa0004900:CDS | 50.0% |
| GCAGCCAAAGTTGGACATAG+TGG | - | chr1_1:7358353-7358372 | None:intergenic | 50.0% | |
| AAATCCAAGTGCAGCACCAG+GGG | - | chr1_1:7358486-7358505 | None:intergenic | 50.0% | |
| CAAATCCAAGTGCAGCACCA+GGG | - | chr1_1:7358487-7358506 | None:intergenic | 50.0% | |
| TCAAATCCAAGTGCAGCACC+AGG | - | chr1_1:7358488-7358507 | None:intergenic | 50.0% | |
| CGGAGAATCAATCCTTCCCA+TGG | - | chr1_1:7358531-7358550 | None:intergenic | 50.0% | |
| ! | TGGGAAGGATTGATTCTCCG+TGG | + | chr1_1:7358531-7358550 | Msa0004900:CDS | 50.0% |
| TTCTCCGTGGCAGAATCGAT+CGG | + | chr1_1:7358544-7358563 | Msa0004900:CDS | 50.0% | |
| !!! | GCCTCTTCCTGGTCCTTTTT+TGG | + | chr1_1:7357651-7357670 | Msa0004900:CDS | 50.0% |
| CCCAAAAAAGGACCAGGAAG+AGG | - | chr1_1:7357655-7357674 | None:intergenic | 50.0% | |
| TGGTTCCCCAAAAAAGGACC+AGG | - | chr1_1:7357661-7357680 | None:intergenic | 50.0% | |
| ! | TCTGAGAAAGCACAGTGGGT+GGG | + | chr1_1:7358215-7358234 | Msa0004900:CDS | 50.0% |
| GCAGCCAAAGTTGGACATAG+TGG | - | chr1_1:7358353-7358372 | None:intergenic | 50.0% | |
| AAATCCAAGTGCAGCACCAG+GGG | - | chr1_1:7358486-7358505 | None:intergenic | 50.0% | |
| CAAATCCAAGTGCAGCACCA+GGG | - | chr1_1:7358487-7358506 | None:intergenic | 50.0% | |
| TCAAATCCAAGTGCAGCACC+AGG | - | chr1_1:7358488-7358507 | None:intergenic | 50.0% | |
| CGGAGAATCAATCCTTCCCA+TGG | - | chr1_1:7358531-7358550 | None:intergenic | 50.0% | |
| ! | TGGGAAGGATTGATTCTCCG+TGG | + | chr1_1:7358531-7358550 | Msa0004900:CDS | 50.0% |
| TTCTCCGTGGCAGAATCGAT+CGG | + | chr1_1:7358544-7358563 | Msa0004900:CDS | 50.0% | |
| AGGACTTCTCTGCCTCTTCC+TGG | + | chr1_1:7357640-7357659 | Msa0004900:CDS | 55.0% | |
| ! | GTCTGAGAAAGCACAGTGGG+TGG | + | chr1_1:7358214-7358233 | Msa0004900:CDS | 55.0% |
| GCACCACTTGTACATTCCCC+TGG | + | chr1_1:7358467-7358486 | Msa0004900:CDS | 55.0% | |
| GCACCAGGGGAATGTACAAG+TGG | - | chr1_1:7358473-7358492 | None:intergenic | 55.0% | |
| ! | GTTGCCGATCGATTCTGCCA+CGG | - | chr1_1:7358551-7358570 | None:intergenic | 55.0% |
| AGGACTTCTCTGCCTCTTCC+TGG | + | chr1_1:7357640-7357659 | Msa0004900:CDS | 55.0% | |
| ! | GTCTGAGAAAGCACAGTGGG+TGG | + | chr1_1:7358214-7358233 | Msa0004900:CDS | 55.0% |
| GCACCACTTGTACATTCCCC+TGG | + | chr1_1:7358467-7358486 | Msa0004900:CDS | 55.0% | |
| GCACCAGGGGAATGTACAAG+TGG | - | chr1_1:7358473-7358492 | None:intergenic | 55.0% | |
| ! | GTTGCCGATCGATTCTGCCA+CGG | - | chr1_1:7358551-7358570 | None:intergenic | 55.0% |
| !! | CATTCCCCTGGTGCTGCACT+TGG | + | chr1_1:7358479-7358498 | Msa0004900:CDS | 60.0% |
| !! | CATTCCCCTGGTGCTGCACT+TGG | + | chr1_1:7358479-7358498 | Msa0004900:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 7357139 | 7358697 | 7357139 | ID=Msa0004900;Name=Msa0004900 |
| chr1_1 | mRNA | 7357139 | 7358697 | 7357139 | ID=Msa0004900-mRNA-1;Parent=Msa0004900;Name=Msa0004900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|446 |
| chr1_1 | exon | 7357139 | 7357976 | 7357139 | ID=Msa0004900-mRNA-1:exon:2545;Parent=Msa0004900-mRNA-1 |
| chr1_1 | exon | 7358195 | 7358697 | 7358195 | ID=Msa0004900-mRNA-1:exon:2546;Parent=Msa0004900-mRNA-1 |
| chr1_1 | CDS | 7357139 | 7357976 | 7357139 | ID=Msa0004900-mRNA-1:cds;Parent=Msa0004900-mRNA-1 |
| chr1_1 | CDS | 7358195 | 7358697 | 7358195 | ID=Msa0004900-mRNA-1:cds;Parent=Msa0004900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
