Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758130 | sp|Q9FVX1|GRXC3_ARATH | 67.500 | 120 | 39 | 0 | 10 | 129 | 11 | 130 | 3.49e-53 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758130 | G7KG98 | 97.674 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 8.66e-89 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008840 | Msa0758130 | 0.804310 | 2.296590e-49 | -8.615850e-47 |
| Msa0009100 | Msa0758130 | 0.800330 | 1.516015e-48 | -8.615850e-47 |
| Msa0014830 | Msa0758130 | 0.802880 | 4.546701e-49 | -8.615850e-47 |
| Msa0017320 | Msa0758130 | 0.805481 | 1.307347e-49 | -8.615850e-47 |
| Msa0020390 | Msa0758130 | 0.805758 | 1.143783e-49 | -8.615850e-47 |
| Msa0030300 | Msa0758130 | 0.823325 | 1.471603e-53 | -8.615850e-47 |
| Msa0033880 | Msa0758130 | 0.822539 | 2.244208e-53 | -8.615850e-47 |
| Msa0038870 | Msa0758130 | 0.825678 | 4.111212e-54 | -8.615850e-47 |
| Msa0047250 | Msa0758130 | 0.802000 | 6.902823e-49 | -8.615850e-47 |
| Msa0049390 | Msa0758130 | 0.802086 | 6.630118e-49 | -8.615850e-47 |
| Msa0053700 | Msa0758130 | 0.805648 | 1.206339e-49 | -8.615850e-47 |
| Msa0059890 | Msa0758130 | 0.802867 | 4.575749e-49 | -8.615850e-47 |
| Msa0065010 | Msa0758130 | 0.808240 | 3.413758e-50 | -8.615850e-47 |
| Msa0074750 | Msa0758130 | 0.832466 | 9.301748e-56 | -8.615850e-47 |
| Msa0077900 | Msa0758130 | 0.822208 | 2.679110e-53 | -8.615850e-47 |
| Msa0081650 | Msa0758130 | 0.821422 | 4.072256e-53 | -8.615850e-47 |
| Msa0084430 | Msa0758130 | 0.834619 | 2.698497e-56 | -8.615850e-47 |
| Msa0091610 | Msa0758130 | 0.805304 | 1.423898e-49 | -8.615850e-47 |
| Msa0095360 | Msa0758130 | 0.806983 | 6.311566e-50 | -8.615850e-47 |
| Msa0095770 | Msa0758130 | 0.806196 | 9.252497e-50 | -8.615850e-47 |
| Msa0103790 | Msa0758130 | 0.804163 | 2.464552e-49 | -8.615850e-47 |
| Msa0108870 | Msa0758130 | 0.813220 | 2.858141e-51 | -8.615850e-47 |
| Msa0111080 | Msa0758130 | 0.807834 | 4.165069e-50 | -8.615850e-47 |
| Msa0115370 | Msa0758130 | 0.816451 | 5.493093e-52 | -8.615850e-47 |
| Msa0609220 | Msa0758130 | 0.808851 | 2.527947e-50 | -8.615850e-47 |
| Msa0614510 | Msa0758130 | 0.802423 | 5.650973e-49 | -8.615850e-47 |
| Msa0618950 | Msa0758130 | 0.804776 | 1.836091e-49 | -8.615850e-47 |
| Msa0626220 | Msa0758130 | 0.809106 | 2.229180e-50 | -8.615850e-47 |
| Msa0630950 | Msa0758130 | 0.801562 | 8.490257e-49 | -8.615850e-47 |
| Msa0640940 | Msa0758130 | 0.821708 | 3.497948e-53 | -8.615850e-47 |
| Msa0652300 | Msa0758130 | 0.804235 | 2.380874e-49 | -8.615850e-47 |
| Msa0662630 | Msa0758130 | 0.804162 | 2.466194e-49 | -8.615850e-47 |
| Msa0679360 | Msa0758130 | 0.820992 | 5.116089e-53 | -8.615850e-47 |
| Msa0686080 | Msa0758130 | 0.802563 | 5.286832e-49 | -8.615850e-47 |
| Msa0689420 | Msa0758130 | 0.812913 | 3.336546e-51 | -8.615850e-47 |
| Msa0697720 | Msa0758130 | 0.810761 | 9.813756e-51 | -8.615850e-47 |
| Msa0703910 | Msa0758130 | 0.803546 | 3.310961e-49 | -8.615850e-47 |
| Msa0705390 | Msa0758130 | 0.829685 | 4.483735e-55 | -8.615850e-47 |
| Msa0713320 | Msa0758130 | 0.806400 | 8.379806e-50 | -8.615850e-47 |
| Msa0732600 | Msa0758130 | 0.802126 | 6.505030e-49 | -8.615850e-47 |
| Msa0743530 | Msa0758130 | 0.819336 | 1.225478e-52 | -8.615850e-47 |
| Msa0746170 | Msa0758130 | 0.810844 | 9.417081e-51 | -8.615850e-47 |
| Msa0746210 | Msa0758130 | 0.811173 | 7.992828e-51 | -8.615850e-47 |
| Msa0750850 | Msa0758130 | 0.808405 | 3.147519e-50 | -8.615850e-47 |
| Msa0756110 | Msa0758130 | 0.812517 | 4.074547e-51 | -8.615850e-47 |
| Msa0758130 | Msa0789560 | 0.808609 | 2.847327e-50 | -8.615850e-47 |
| Msa0758130 | Msa0792780 | 0.801266 | 9.763621e-49 | -8.615850e-47 |
| Msa0758130 | Msa0817120 | 0.806448 | 8.187113e-50 | -8.615850e-47 |
| Msa0758130 | Msa0822170 | 0.804835 | 1.784897e-49 | -8.615850e-47 |
| Msa0758130 | Msa0837780 | 0.804406 | 2.193457e-49 | -8.615850e-47 |
| Msa0758130 | Msa0844390 | 0.803311 | 3.703783e-49 | -8.615850e-47 |
| Msa0758130 | Msa0861470 | 0.815139 | 1.077221e-51 | -8.615850e-47 |
| Msa0758130 | Msa0861570 | 0.818598 | 1.803158e-52 | -8.615850e-47 |
| Msa0758130 | Msa0872440 | 0.809742 | 1.628181e-50 | -8.615850e-47 |
| Msa0758130 | Msa0903780 | 0.804737 | 1.871365e-49 | -8.615850e-47 |
| Msa0758130 | Msa0921870 | 0.804857 | 1.766043e-49 | -8.615850e-47 |
| Msa0758130 | Msa0924150 | -0.800706 | 1.271035e-48 | -8.615850e-47 |
| Msa0758130 | Msa0928120 | 0.809712 | 1.652487e-50 | -8.615850e-47 |
| Msa0758130 | Msa0958030 | 0.809800 | 1.581636e-50 | -8.615850e-47 |
| Msa0758130 | Msa0990580 | 0.800517 | 1.388717e-48 | -8.615850e-47 |
| Msa0758130 | Msa0992580 | 0.804168 | 2.458586e-49 | -8.615850e-47 |
| Msa0758130 | Msa0994370 | 0.817113 | 3.902300e-52 | -8.615850e-47 |
| Msa0758130 | Msa1037520 | 0.813869 | 2.057215e-51 | -8.615850e-47 |
| Msa0758130 | Msa1042660 | 0.825982 | 3.482909e-54 | -8.615850e-47 |
| Msa0758130 | Msa1063420 | 0.801440 | 8.997397e-49 | -8.615850e-47 |
| Msa0758130 | Msa1070390 | 0.802162 | 6.395542e-49 | -8.615850e-47 |
| Msa0758130 | Msa1071320 | 0.819687 | 1.018883e-52 | -8.615850e-47 |
| Msa0758130 | Msa1089320 | 0.802945 | 4.409336e-49 | -8.615850e-47 |
| Msa0758130 | Msa1113590 | 0.818063 | 2.382870e-52 | -8.615850e-47 |
| Msa0758130 | Msa1122780 | 0.800955 | 1.130248e-48 | -8.615850e-47 |
| Msa0758130 | Msa1127430 | 0.809958 | 1.462504e-50 | -8.615850e-47 |
| Msa0758130 | Msa1131490 | 0.808133 | 3.596760e-50 | -8.615850e-47 |
| Msa0758130 | Msa1154490 | 0.809665 | 1.691194e-50 | -8.615850e-47 |
| Msa0758130 | Msa1158230 | 0.800952 | 1.131930e-48 | -8.615850e-47 |
| Msa0758130 | Msa1178580 | 0.801779 | 7.664366e-49 | -8.615850e-47 |
| Msa0758130 | Msa1199710 | 0.825893 | 3.656914e-54 | -8.615850e-47 |
| Msa0758130 | Msa1202580 | 0.804567 | 2.030581e-49 | -8.615850e-47 |
| Msa0758130 | Msa1205590 | 0.803530 | 3.336755e-49 | -8.615850e-47 |
| Msa0758130 | Msa1206650 | 0.821029 | 5.017594e-53 | -8.615850e-47 |
| Msa0758130 | Msa1211340 | 0.819232 | 1.293966e-52 | -8.615850e-47 |
| Msa0758130 | Msa1233850 | 0.818603 | 1.798401e-52 | -8.615850e-47 |
| Msa0758130 | Msa1250110 | 0.807560 | 4.762394e-50 | -8.615850e-47 |
| Msa0758130 | Msa1250730 | 0.813662 | 2.285035e-51 | -8.615850e-47 |
| Msa0758130 | Msa1253810 | 0.802019 | 6.842492e-49 | -8.615850e-47 |
| Msa0758130 | Msa1259640 | 0.819500 | 1.124171e-52 | -8.615850e-47 |
| Msa0758130 | Msa1270660 | 0.812349 | 4.434519e-51 | -8.615850e-47 |
| Msa0758130 | Msa1276150 | 0.801165 | 1.023919e-48 | -8.615850e-47 |
| Msa0758130 | Msa1297530 | 0.800699 | 1.275194e-48 | -8.615850e-47 |
| Msa0758130 | Msa1320820 | 0.806143 | 9.493792e-50 | -8.615850e-47 |
| Msa0758130 | Msa1329790 | 0.817351 | 3.450454e-52 | -8.615850e-47 |
| Msa0758130 | Msa1336040 | 0.806334 | 8.651528e-50 | -8.615850e-47 |
| Msa0758130 | Msa1339190 | 0.813462 | 2.528633e-51 | -8.615850e-47 |
| Msa0758130 | Msa1362420 | 0.812434 | 4.247939e-51 | -8.615850e-47 |
| Msa0758130 | Msa1364210 | 0.804692 | 1.912415e-49 | -8.615850e-47 |
| Msa0758130 | Msa1372290 | 0.808662 | 2.774433e-50 | -8.615850e-47 |
| Msa0758130 | Msa1377800 | 0.814632 | 1.395501e-51 | -8.615850e-47 |
| Msa0758130 | Msa1381650 | 0.813453 | 2.540841e-51 | -8.615850e-47 |
| Msa0758130 | Msa1389850 | 0.810471 | 1.133810e-50 | -8.615850e-47 |
| Msa0758130 | Msa1411950 | 0.807161 | 5.786331e-50 | -8.615850e-47 |
| Msa0758130 | Msa1424780 | 0.801230 | 9.933117e-49 | -8.615850e-47 |
| Msa0758130 | Msa1428780 | 0.802882 | 4.544104e-49 | -8.615850e-47 |
| Msa0758130 | Msa1437210 | 0.804562 | 2.035037e-49 | -8.615850e-47 |
| Msa0758130 | Msa1447890 | 0.802863 | 4.583765e-49 | -8.615850e-47 |
| Msa0758130 | Msa1463600 | 0.808213 | 3.459426e-50 | -8.615850e-47 |
| Msa0127850 | Msa0758130 | 0.824730 | 6.891431e-54 | -8.615850e-47 |
| Msa0142500 | Msa0758130 | 0.808730 | 2.683090e-50 | -8.615850e-47 |
| Msa0146080 | Msa0758130 | 0.820515 | 6.586589e-53 | -8.615850e-47 |
| Msa0147980 | Msa0758130 | 0.800280 | 1.551875e-48 | -8.615850e-47 |
| Msa0150260 | Msa0758130 | 0.825182 | 5.390320e-54 | -8.615850e-47 |
| Msa0154920 | Msa0758130 | 0.817583 | 3.058238e-52 | -8.615850e-47 |
| Msa0167980 | Msa0758130 | 0.804850 | 1.772456e-49 | -8.615850e-47 |
| Msa0174000 | Msa0758130 | 0.825781 | 3.886209e-54 | -8.615850e-47 |
| Msa0176330 | Msa0758130 | 0.816079 | 6.651777e-52 | -8.615850e-47 |
| Msa0183870 | Msa0758130 | 0.820054 | 8.397519e-53 | -8.615850e-47 |
| Msa0187490 | Msa0758130 | 0.800438 | 1.441036e-48 | -8.615850e-47 |
| Msa0193600 | Msa0758130 | 0.815998 | 6.934370e-52 | -8.615850e-47 |
| Msa0223330 | Msa0758130 | 0.800646 | 1.307400e-48 | -8.615850e-47 |
| Msa0378970 | Msa0758130 | 0.801880 | 7.308636e-49 | -8.615850e-47 |
| Msa0382370 | Msa0758130 | 0.824111 | 9.632854e-54 | -8.615850e-47 |
| Msa0387050 | Msa0758130 | 0.800156 | 1.644920e-48 | -8.615850e-47 |
| Msa0394690 | Msa0758130 | 0.816876 | 4.410103e-52 | -8.615850e-47 |
| Msa0431770 | Msa0758130 | 0.805506 | 1.291793e-49 | -8.615850e-47 |
| Msa0432160 | Msa0758130 | 0.815153 | 1.069587e-51 | -8.615850e-47 |
| Msa0434570 | Msa0758130 | 0.807196 | 5.689044e-50 | -8.615850e-47 |
| Msa0434770 | Msa0758130 | 0.802679 | 5.002669e-49 | -8.615850e-47 |
| Msa0439890 | Msa0758130 | 0.803471 | 3.430695e-49 | -8.615850e-47 |
| Msa0442310 | Msa0758130 | 0.807236 | 5.577869e-50 | -8.615850e-47 |
| Msa0476680 | Msa0758130 | 0.814274 | 1.674961e-51 | -8.615850e-47 |
| Msa0244980 | Msa0758130 | 0.813449 | 2.545724e-51 | -8.615850e-47 |
| Msa0251770 | Msa0758130 | 0.822319 | 2.523925e-53 | -8.615850e-47 |
| Msa0273650 | Msa0758130 | 0.818832 | 1.595123e-52 | -8.615850e-47 |
| Msa0283420 | Msa0758130 | 0.827762 | 1.307814e-54 | -8.615850e-47 |
| Msa0296790 | Msa0758130 | 0.822017 | 2.966566e-53 | -8.615850e-47 |
| Msa0310430 | Msa0758130 | 0.812163 | 4.868393e-51 | -8.615850e-47 |
| Msa0311720 | Msa0758130 | 0.811866 | 5.649419e-51 | -8.615850e-47 |
| Msa0313930 | Msa0758130 | 0.817656 | 2.944960e-52 | -8.615850e-47 |
| Msa0321690 | Msa0758130 | 0.807284 | 5.450316e-50 | -8.615850e-47 |
| Msa0337510 | Msa0758130 | 0.807078 | 6.024950e-50 | -8.615850e-47 |
| Msa0342290 | Msa0758130 | 0.806982 | 6.313510e-50 | -8.615850e-47 |
| Msa0483740 | Msa0758130 | 0.818799 | 1.623640e-52 | -8.615850e-47 |
| Msa0484740 | Msa0758130 | 0.813486 | 2.498108e-51 | -8.615850e-47 |
| Msa0491000 | Msa0758130 | 0.808621 | 2.831081e-50 | -8.615850e-47 |
| Msa0518960 | Msa0758130 | 0.801972 | 6.995695e-49 | -8.615850e-47 |
| Msa0521010 | Msa0758130 | 0.809570 | 1.772424e-50 | -8.615850e-47 |
| Msa0527740 | Msa0758130 | 0.800788 | 1.222523e-48 | -8.615850e-47 |
| Msa0531250 | Msa0758130 | 0.802346 | 5.861524e-49 | -8.615850e-47 |
| Msa0534410 | Msa0758130 | 0.804593 | 2.005214e-49 | -8.615850e-47 |
| Msa0567240 | Msa0758130 | 0.815068 | 1.117264e-51 | -8.615850e-47 |
| Msa0588220 | Msa0758130 | 0.803462 | 3.445841e-49 | -8.615850e-47 |
| Msa0590650 | Msa0758130 | 0.800945 | 1.135643e-48 | -8.615850e-47 |
| Msa0600450 | Msa0758130 | 0.823417 | 1.400778e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758130 | MtrunA17_Chr5g0404751 | 97.674 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 1.67e-92 | 263 |
| Msa0758130 | MtrunA17_Chr2g0299021 | 57.547 | 106 | 45 | 0 | 21 | 126 | 71 | 176 | 1.93e-40 | 133 |
| Msa0758130 | MtrunA17_Chr7g0228311 | 45.556 | 90 | 49 | 0 | 40 | 129 | 10 | 99 | 2.02e-24 | 90.1 |
| Msa0758130 | MtrunA17_Chr3g0117411 | 43.182 | 88 | 50 | 0 | 42 | 129 | 27 | 114 | 9.71e-21 | 80.9 |
| Msa0758130 | MtrunA17_Chr1g0182971 | 41.304 | 92 | 53 | 1 | 36 | 126 | 86 | 177 | 4.85e-20 | 80.9 |
| Msa0758130 | MtrunA17_Chr3g0117391 | 42.353 | 85 | 49 | 0 | 42 | 126 | 30 | 114 | 1.75e-19 | 78.2 |
| Msa0758130 | MtrunA17_Chr7g0268761 | 38.372 | 86 | 52 | 1 | 45 | 129 | 13 | 98 | 1.38e-12 | 59.7 |
| Msa0758130 | MtrunA17_Chr7g0224091 | 38.636 | 88 | 53 | 1 | 43 | 129 | 32 | 119 | 4.91e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758130 | AT1G77370.1 | 67.500 | 120 | 39 | 0 | 10 | 129 | 11 | 130 | 3.55e-54 | 166 |
| Msa0758130 | AT1G77370.2 | 59.091 | 132 | 28 | 1 | 24 | 129 | 25 | 156 | 3.35e-48 | 152 |
| Msa0758130 | AT5G20500.1 | 52.500 | 120 | 57 | 0 | 7 | 126 | 6 | 125 | 1.89e-41 | 134 |
| Msa0758130 | AT5G40370.1 | 45.977 | 87 | 47 | 0 | 40 | 126 | 10 | 96 | 1.03e-22 | 86.3 |
| Msa0758130 | AT5G40370.2 | 48.750 | 80 | 41 | 0 | 47 | 126 | 42 | 121 | 1.88e-20 | 81.3 |
| Msa0758130 | AT4G28730.1 | 44.565 | 92 | 50 | 1 | 36 | 126 | 73 | 164 | 2.26e-20 | 82.0 |
| Msa0758130 | AT2G20270.1 | 41.304 | 92 | 53 | 1 | 36 | 126 | 78 | 169 | 6.00e-19 | 78.2 |
| Msa0758130 | AT5G63030.1 | 42.683 | 82 | 47 | 0 | 45 | 126 | 31 | 112 | 6.67e-18 | 74.3 |
| Msa0758130 | AT4G28730.2 | 45.588 | 68 | 36 | 1 | 36 | 102 | 73 | 140 | 4.52e-13 | 62.4 |
Find 43 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCCATTCTCAAACAAAA+AGG | 0.217348 | 5_2:+13230454 | None:intergenic |
| ATTTCGTTGTCATTGTTAAT+TGG | 0.231844 | 5_2:-13228425 | Msa0758130:three_prime_UTR |
| AAATCAGTGTCGTGTCAAAT+TGG | 0.237203 | 5_2:-13230583 | Msa0758130:five_prime_UTR |
| TCAAATTCAGGGTGTTCTTC+TGG | 0.247136 | 5_2:-13229605 | Msa0758130:CDS |
| AGATGATGGGTATCAAATTC+AGG | 0.269297 | 5_2:-13229617 | Msa0758130:CDS |
| GTCCCACAAGTGTTTGTCTA+TGG | 0.290060 | 5_2:-13229562 | Msa0758130:CDS |
| ATTTGACATTGGTTCTTTGT+AGG | 0.328186 | 5_2:+13228229 | None:intergenic |
| GACACGCGTGGAAAACAATA+AGG | 0.342799 | 5_2:-13230623 | None:intergenic |
| TACGTACGGGCAATAGGATT+TGG | 0.352701 | 5_2:+13230364 | None:intergenic |
| TATATATACGTACGGGCAAT+AGG | 0.386425 | 5_2:+13230358 | None:intergenic |
| GGTGTTCTTCTGGATTTGAT+TGG | 0.395517 | 5_2:-13229595 | Msa0758130:CDS |
| GGAAACTGAATTTGAAGCTT+CGG | 0.429054 | 5_2:+13230433 | None:intergenic |
| AATCAGTGTCGTGTCAAATT+GGG | 0.440854 | 5_2:-13230582 | Msa0758130:five_prime_UTR |
| GGAGAAGATGGTTATTCTGT+TGG | 0.444652 | 5_2:+13230385 | None:intergenic |
| TTTGTGCTTGTTTAGATGAT+GGG | 0.450399 | 5_2:-13229630 | Msa0758130:intron |
| AGCAGTGGAGCTCTAATTGT+TGG | 0.456983 | 5_2:-13228453 | Msa0758130:three_prime_UTR |
| AACAGAACTATTCTATTCAA+TGG | 0.462801 | 5_2:+13228184 | None:intergenic |
| GCAATAGGATTTGGAGAAGA+TGG | 0.475665 | 5_2:+13230373 | None:intergenic |
| TCCCATAGACAAACACTTGT+GGG | 0.486540 | 5_2:+13229560 | None:intergenic |
| GATGATGGGTATCAAATTCA+GGG | 0.487362 | 5_2:-13229616 | Msa0758130:CDS |
| ATCTATAATTTGTATGAATG+TGG | 0.490361 | 5_2:-13228650 | Msa0758130:three_prime_UTR |
| TCTATAATTTGTATGAATGT+GGG | 0.491540 | 5_2:-13228649 | Msa0758130:three_prime_UTR |
| ATTGAATCTATCTCAAGTAA+TGG | 0.497398 | 5_2:-13228281 | Msa0758130:three_prime_UTR |
| TTTGTCTATGGGAAGCATAT+TGG | 0.501883 | 5_2:-13229550 | Msa0758130:CDS |
| CGTGGAAAACAATAAGGGTC+TGG | 0.507148 | 5_2:-13230617 | None:intergenic |
| AAATCAAGCTCAACAACAAA+AGG | 0.509148 | 5_2:+13230212 | None:intergenic |
| GTCTATGGGAAGCATATTGG+TGG | 0.513655 | 5_2:-13229547 | Msa0758130:CDS |
| TCCCACAAGTGTTTGTCTAT+GGG | 0.535106 | 5_2:-13229561 | Msa0758130:CDS |
| AATCAAAGAAGTAAAACTAC+AGG | 0.537670 | 5_2:-13228252 | Msa0758130:three_prime_UTR |
| ACACGCGTGGAAAACAATAA+GGG | 0.548482 | 5_2:-13230622 | None:intergenic |
| AAGCATATTGGTGGATCAGA+TGG | 0.559694 | 5_2:-13229538 | Msa0758130:intron |
| GTTTCTGCAATTCACCACTC+TGG | 0.562376 | 5_2:+13228719 | None:intergenic |
| CGAAGGTTTCAAGCTTCTAG+TGG | 0.563064 | 5_2:-13228604 | Msa0758130:three_prime_UTR |
| AAGACAAGACAATTTGACAT+TGG | 0.563313 | 5_2:+13228218 | None:intergenic |
| CTTCGATATACATGAAAATG+CGG | 0.575457 | 5_2:+13228622 | None:intergenic |
| CTATAATTTGTATGAATGTG+GGG | 0.594049 | 5_2:-13228648 | Msa0758130:three_prime_UTR |
| TTCGATATACATGAAAATGC+GGG | 0.595061 | 5_2:+13228623 | None:intergenic |
| TTCCCATAGACAAACACTTG+TGG | 0.621034 | 5_2:+13229559 | None:intergenic |
| TGATTGTATACTTGAGACTG+AGG | 0.636878 | 5_2:-13228682 | Msa0758130:three_prime_UTR |
| GAAAGTACGATCATGAGCAG+TGG | 0.651793 | 5_2:-13228468 | Msa0758130:three_prime_UTR |
| GAAGAATGAAGATGTTACAG+TGG | 0.663384 | 5_2:-13230514 | Msa0758130:exon |
| GTTGTTGAGCTTGATTTGCG+AGG | 0.668245 | 5_2:-13230206 | Msa0758130:intron |
| CTCAGTGCTGCAGTCCAGAG+TGG | 0.673667 | 5_2:-13228733 | Msa0758130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATTGTATTTATTTTTTTA+TGG | + | chr5_2:13230591-13230610 | None:intergenic | 10.0% |
| !!! | TATGTGTTTTGATATTTTTA+AGG | - | chr5_2:13228729-13228748 | Msa0758130:CDS | 15.0% |
| !!! | AAGGGAATATTTATTATTTT+CGG | + | chr5_2:13229731-13229750 | None:intergenic | 15.0% |
| !!! | TTTTTTTCCATATACTTTAA+AGG | - | chr5_2:13229821-13229840 | Msa0758130:intron | 15.0% |
| !! | TATCTATATGTCATTATAAA+AGG | - | chr5_2:13229903-13229922 | Msa0758130:intron | 15.0% |
| !!! | AATACTTTTTCATGTTTTTT+AGG | - | chr5_2:13230145-13230164 | Msa0758130:intron | 15.0% |
| !!! | ATTAAGTTGTTTATCAAACA+AGG | + | chr5_2:13228586-13228605 | None:intergenic | 20.0% |
| !! | AATAACCTATATACATAAGA+GGG | + | chr5_2:13228818-13228837 | None:intergenic | 20.0% |
| !! | AAATAACCTATATACATAAG+AGG | + | chr5_2:13228819-13228838 | None:intergenic | 20.0% |
| !!! | AAACAAAAAAACTGATTTCA+TGG | - | chr5_2:13228908-13228927 | Msa0758130:intron | 20.0% |
| !! | TCATATAGTTTAAGAACTAA+AGG | + | chr5_2:13229584-13229603 | None:intergenic | 20.0% |
| !! | TAAACTATATGAAAATAACG+AGG | - | chr5_2:13229592-13229611 | Msa0758130:CDS | 20.0% |
| !!! | CTTATATTTTTGGATATAGA+GGG | + | chr5_2:13229646-13229665 | None:intergenic | 20.0% |
| !! | CTCTATATCCAAAAATATAA+GGG | - | chr5_2:13229645-13229664 | Msa0758130:intron | 20.0% |
| !!! | TGATAGAAATTTTTTATGAG+AGG | - | chr5_2:13229697-13229716 | Msa0758130:intron | 20.0% |
| !!! | TATTTAGCCTTTAAAGTATA+TGG | + | chr5_2:13229831-13229850 | None:intergenic | 20.0% |
| !! | TATGTCATTATAAAAGGTTA+AGG | - | chr5_2:13229909-13229928 | Msa0758130:intron | 20.0% |
| !!! | ATCTATAATTTGTATGAATG+TGG | - | chr5_2:13230073-13230092 | Msa0758130:intron | 20.0% |
| !!! | TCTATAATTTGTATGAATGT+GGG | - | chr5_2:13230074-13230093 | Msa0758130:intron | 20.0% |
| !!! | ATGTTTTTTAGGTATTTACT+AGG | - | chr5_2:13230156-13230175 | Msa0758130:intron | 20.0% |
| !!! | ATGTTTTCATTTTGTTCTAT+AGG | - | chr5_2:13230233-13230252 | Msa0758130:CDS | 20.0% |
| !!! | AATTGTAGTTTTCAATAATC+TGG | - | chr5_2:13230326-13230345 | Msa0758130:intron | 20.0% |
| ! | AAGAGAGTTATATATACGTA+CGG | + | chr5_2:13228376-13228395 | None:intergenic | 25.0% |
| ! | TTCAATTATTATCACGTGTT+AGG | - | chr5_2:13228401-13228420 | Msa0758130:three_prime_UTR | 25.0% |
| ! | TCAATTATTATCACGTGTTA+GGG | - | chr5_2:13228402-13228421 | Msa0758130:three_prime_UTR | 25.0% |
| ! | GTTTAATTAATATGCTCTGT+CGG | - | chr5_2:13228639-13228658 | Msa0758130:three_prime_UTR | 25.0% |
| ! | GACAAGAATTCAAATAGTAT+CGG | + | chr5_2:13228789-13228808 | None:intergenic | 25.0% |
| !! | TTTTCATAAGTGTTTATGTC+AGG | - | chr5_2:13228993-13229012 | Msa0758130:intron | 25.0% |
| ! | AATGATAACAGTTGTCTATT+TGG | + | chr5_2:13229041-13229060 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | + | chr5_2:13229310-13229329 | None:intergenic | 25.0% |
| ! | TATGAAAATAACGAGGAATT+TGG | - | chr5_2:13229599-13229618 | Msa0758130:CDS | 25.0% |
| !!! | CCTTATATTTTTGGATATAG+AGG | + | chr5_2:13229647-13229666 | None:intergenic | 25.0% |
| ! | CCTCTATATCCAAAAATATA+AGG | - | chr5_2:13229644-13229663 | Msa0758130:intron | 25.0% |
| ! | TATATCCAAAAATATAAGGG+TGG | - | chr5_2:13229648-13229667 | Msa0758130:intron | 25.0% |
| !! | ATACTTTAAAGGCTAAATAG+AGG | - | chr5_2:13229832-13229851 | Msa0758130:intron | 25.0% |
| ! | TAATGAAGGGATTAAATTGA+AGG | - | chr5_2:13229864-13229883 | Msa0758130:intron | 25.0% |
| !! | CTATAATTTGTATGAATGTG+GGG | - | chr5_2:13230075-13230094 | Msa0758130:intron | 25.0% |
| ! | ATTTCGTTGTCATTGTTAAT+TGG | - | chr5_2:13230298-13230317 | Msa0758130:intron | 25.0% |
| ! | ATTGAATCTATCTCAAGTAA+TGG | - | chr5_2:13230442-13230461 | Msa0758130:CDS | 25.0% |
| ! | AATCAAAGAAGTAAAACTAC+AGG | - | chr5_2:13230471-13230490 | Msa0758130:CDS | 25.0% |
| ! | AACAGAACTATTCTATTCAA+TGG | + | chr5_2:13230542-13230561 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTACCAAACAAAA+TGG | - | chr5_2:13230558-13230577 | Msa0758130:five_prime_UTR | 25.0% |
| CTCAAACAAAAAGGGTAAAA+CGG | + | chr5_2:13228263-13228282 | None:intergenic | 30.0% | |
| !! | TTACCCTTTTTGTTTGAGAA+TGG | - | chr5_2:13228265-13228284 | Msa0758130:three_prime_UTR | 30.0% |
| GTTCCATTCTCAAACAAAAA+GGG | + | chr5_2:13228271-13228290 | None:intergenic | 30.0% | |
| AGAGAGTTATATATACGTAC+GGG | + | chr5_2:13228375-13228394 | None:intergenic | 30.0% | |
| ! | AATGTTTCTCTGATTTTCGT+AGG | - | chr5_2:13228443-13228462 | Msa0758130:three_prime_UTR | 30.0% |
| AAATCAAGCTCAACAACAAA+AGG | + | chr5_2:13228514-13228533 | None:intergenic | 30.0% | |
| !! | TATATACATAAGAGGGTATC+AGG | + | chr5_2:13228811-13228830 | None:intergenic | 30.0% |
| TGATACCCTCTTATGTATAT+AGG | - | chr5_2:13228810-13228829 | Msa0758130:intron | 30.0% | |
| TAACAGTTGTCTATTTGGAT+TGG | + | chr5_2:13229036-13229055 | None:intergenic | 30.0% | |
| ! | TTTTGTGCTTGTTTAGATGA+TGG | - | chr5_2:13229092-13229111 | Msa0758130:intron | 30.0% |
| TTTGTGCTTGTTTAGATGAT+GGG | - | chr5_2:13229093-13229112 | Msa0758130:intron | 30.0% | |
| !! | TTCTTAGACTTTTGCTTTTC+TGG | - | chr5_2:13229219-13229238 | Msa0758130:intron | 30.0% |
| !! | TCTTAGACTTTTGCTTTTCT+GGG | - | chr5_2:13229220-13229239 | Msa0758130:intron | 30.0% |
| TTTCATACTTAGTCCTTGTT+TGG | - | chr5_2:13229294-13229313 | Msa0758130:intron | 30.0% | |
| ! | ACTTTCCACCCTTATATTTT+TGG | + | chr5_2:13229656-13229675 | None:intergenic | 30.0% |
| ! | ACAAATTTTCACACACTCAA+GGG | + | chr5_2:13229749-13229768 | None:intergenic | 30.0% |
| CATTAGTACTTAAGATGCTA+GGG | + | chr5_2:13229781-13229800 | None:intergenic | 30.0% | |
| TCATTAGTACTTAAGATGCT+AGG | + | chr5_2:13229782-13229801 | None:intergenic | 30.0% | |
| TCTTAAGTACTAATGAGACA+AGG | - | chr5_2:13229786-13229805 | Msa0758130:intron | 30.0% | |
| CTTAAGTACTAATGAGACAA+GGG | - | chr5_2:13229787-13229806 | Msa0758130:intron | 30.0% | |
| TTAAGTACTAATGAGACAAG+GGG | - | chr5_2:13229788-13229807 | Msa0758130:intron | 30.0% | |
| ! | AGAGGAGATAATGATAATGA+AGG | - | chr5_2:13229850-13229869 | Msa0758130:intron | 30.0% |
| ! | GAGGAGATAATGATAATGAA+GGG | - | chr5_2:13229851-13229870 | Msa0758130:intron | 30.0% |
| ATGAGCAAACTTTGTAAGAA+TGG | + | chr5_2:13229956-13229975 | None:intergenic | 30.0% | |
| TTCGATATACATGAAAATGC+GGG | + | chr5_2:13230103-13230122 | None:intergenic | 30.0% | |
| CTTCGATATACATGAAAATG+CGG | + | chr5_2:13230104-13230123 | None:intergenic | 30.0% | |
| !! | ATTTGACATTGGTTCTTTGT+AGG | + | chr5_2:13230497-13230516 | None:intergenic | 30.0% |
| AAGACAAGACAATTTGACAT+TGG | + | chr5_2:13230508-13230527 | None:intergenic | 30.0% | |
| AAATCAGTGTCGTGTCAAAT+TGG | - | chr5_2:13228140-13228159 | Msa0758130:three_prime_UTR | 35.0% | |
| AATCAGTGTCGTGTCAAATT+GGG | - | chr5_2:13228141-13228160 | Msa0758130:three_prime_UTR | 35.0% | |
| GAAGAATGAAGATGTTACAG+TGG | - | chr5_2:13228209-13228228 | Msa0758130:three_prime_UTR | 35.0% | |
| GGTTCCATTCTCAAACAAAA+AGG | + | chr5_2:13228272-13228291 | None:intergenic | 35.0% | |
| ! | GGAAACTGAATTTGAAGCTT+CGG | + | chr5_2:13228293-13228312 | None:intergenic | 35.0% |
| !! | GATTGCGTTTTGAACAAAAG+CGG | + | chr5_2:13228314-13228333 | None:intergenic | 35.0% |
| TATATATACGTACGGGCAAT+AGG | + | chr5_2:13228368-13228387 | None:intergenic | 35.0% | |
| TAACGAGACAACACAATCAT+CGG | + | chr5_2:13228688-13228707 | None:intergenic | 35.0% | |
| ! | ATTGTTTTCGCGTAAGCTAT+AGG | - | chr5_2:13228855-13228874 | Msa0758130:intron | 35.0% |
| !! | AGATGATGGGTATCAAATTC+AGG | - | chr5_2:13229106-13229125 | Msa0758130:intron | 35.0% |
| !! | GATGATGGGTATCAAATTCA+GGG | - | chr5_2:13229107-13229126 | Msa0758130:intron | 35.0% |
| ! | TTTGTCTATGGGAAGCATAT+TGG | - | chr5_2:13229173-13229192 | Msa0758130:intron | 35.0% |
| ! | GACAAATTTTCACACACTCA+AGG | + | chr5_2:13229750-13229769 | None:intergenic | 35.0% |
| TTAAGATGCTAGGGATTAAC+AGG | + | chr5_2:13229772-13229791 | None:intergenic | 35.0% | |
| TGGATAGAGAAACACAAAGA+GGG | + | chr5_2:13229936-13229955 | None:intergenic | 35.0% | |
| ATGGATAGAGAAACACAAAG+AGG | + | chr5_2:13229937-13229956 | None:intergenic | 35.0% | |
| TGATTGTATACTTGAGACTG+AGG | - | chr5_2:13230041-13230060 | Msa0758130:intron | 35.0% | |
| ! | CGCATTTTCATGTATATCGA+AGG | - | chr5_2:13230102-13230121 | Msa0758130:intron | 35.0% |
| !!! | ACATGTACTTTTAGCTTGTC+TGG | - | chr5_2:13230185-13230204 | Msa0758130:intron | 35.0% |
| !! | TGGTACAAAGCCATTTTGTT+TGG | + | chr5_2:13230571-13230590 | None:intergenic | 35.0% |
| GGAGAAGATGGTTATTCTGT+TGG | + | chr5_2:13228341-13228360 | None:intergenic | 40.0% | |
| GCAATAGGATTTGGAGAAGA+TGG | + | chr5_2:13228353-13228372 | None:intergenic | 40.0% | |
| ! | ACTGATTTCATGGTCTGTCA+TGG | - | chr5_2:13228918-13228937 | Msa0758130:intron | 40.0% |
| ! | TCAAATTCAGGGTGTTCTTC+TGG | - | chr5_2:13229118-13229137 | Msa0758130:intron | 40.0% |
| GGTGTTCTTCTGGATTTGAT+TGG | - | chr5_2:13229128-13229147 | Msa0758130:intron | 40.0% | |
| TCCCACAAGTGTTTGTCTAT+GGG | - | chr5_2:13229162-13229181 | Msa0758130:intron | 40.0% | |
| TCCCATAGACAAACACTTGT+GGG | + | chr5_2:13229166-13229185 | None:intergenic | 40.0% | |
| TTCCCATAGACAAACACTTG+TGG | + | chr5_2:13229167-13229186 | None:intergenic | 40.0% | |
| ! | AAGCATATTGGTGGATCAGA+TGG | - | chr5_2:13229185-13229204 | Msa0758130:intron | 40.0% |
| GTGGAAAGTGAGAGAAGATA+GGG | - | chr5_2:13229667-13229686 | Msa0758130:intron | 40.0% | |
| TACGTACGGGCAATAGGATT+TGG | + | chr5_2:13228362-13228381 | None:intergenic | 45.0% | |
| !! | GTTGTTGAGCTTGATTTGCG+AGG | - | chr5_2:13228517-13228536 | Msa0758130:three_prime_UTR | 45.0% |
| GTCCCACAAGTGTTTGTCTA+TGG | - | chr5_2:13229161-13229180 | Msa0758130:intron | 45.0% | |
| ! | GTCTATGGGAAGCATATTGG+TGG | - | chr5_2:13229176-13229195 | Msa0758130:intron | 45.0% |
| AGGGATGCATGTTTGAGAGA+GGG | + | chr5_2:13229627-13229646 | None:intergenic | 45.0% | |
| GGTGGAAAGTGAGAGAAGAT+AGG | - | chr5_2:13229666-13229685 | Msa0758130:intron | 45.0% | |
| GTTTCTGCAATTCACCACTC+TGG | + | chr5_2:13230007-13230026 | None:intergenic | 45.0% | |
| CGAAGGTTTCAAGCTTCTAG+TGG | - | chr5_2:13230119-13230138 | Msa0758130:intron | 45.0% | |
| ! | GAAAGTACGATCATGAGCAG+TGG | - | chr5_2:13230255-13230274 | Msa0758130:CDS | 45.0% |
| ! | AGCAGTGGAGCTCTAATTGT+TGG | - | chr5_2:13230270-13230289 | Msa0758130:intron | 45.0% |
| GAGGGATGCATGTTTGAGAG+AGG | + | chr5_2:13229628-13229647 | None:intergenic | 50.0% | |
| CTCAGTGCTGCAGTCCAGAG+TGG | - | chr5_2:13229990-13230009 | Msa0758130:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 13228112 | 13230633 | 13228112 | ID=Msa0758130;Name=Msa0758130 |
| chr5_2 | mRNA | 13228112 | 13230633 | 13228112 | ID=Msa0758130-mRNA-1;Parent=Msa0758130;Name=Msa0758130-mRNA-1;_AED=0.17;_eAED=0.17;_QI=102|1|1|1|1|1|4|590|129 |
| chr5_2 | exon | 13228112 | 13228757 | 13228112 | ID=Msa0758130-mRNA-1:exon:5970;Parent=Msa0758130-mRNA-1 |
| chr5_2 | exon | 13229539 | 13229637 | 13229539 | ID=Msa0758130-mRNA-1:exon:5969;Parent=Msa0758130-mRNA-1 |
| chr5_2 | exon | 13230207 | 13230280 | 13230207 | ID=Msa0758130-mRNA-1:exon:5968;Parent=Msa0758130-mRNA-1 |
| chr5_2 | exon | 13230371 | 13230633 | 13230371 | ID=Msa0758130-mRNA-1:exon:5967;Parent=Msa0758130-mRNA-1 |
| chr5_2 | five_prime_UTR | 13230532 | 13230633 | 13230532 | ID=Msa0758130-mRNA-1:five_prime_utr;Parent=Msa0758130-mRNA-1 |
| chr5_2 | CDS | 13230371 | 13230531 | 13230371 | ID=Msa0758130-mRNA-1:cds;Parent=Msa0758130-mRNA-1 |
| chr5_2 | CDS | 13230207 | 13230280 | 13230207 | ID=Msa0758130-mRNA-1:cds;Parent=Msa0758130-mRNA-1 |
| chr5_2 | CDS | 13229539 | 13229637 | 13229539 | ID=Msa0758130-mRNA-1:cds;Parent=Msa0758130-mRNA-1 |
| chr5_2 | CDS | 13228702 | 13228757 | 13228702 | ID=Msa0758130-mRNA-1:cds;Parent=Msa0758130-mRNA-1 |
| chr5_2 | three_prime_UTR | 13228112 | 13228701 | 13228112 | ID=Msa0758130-mRNA-1:three_prime_utr;Parent=Msa0758130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
