AlfalfaGEDB | Msa0180750

M. sativa cultivar zhongmu-4 / Msa0180750

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017120	Msa0180750	0.813323	2.712817e-51	-8.615850e-47
Msa0094670	Msa0180750	0.806910	6.539932e-50	-8.615850e-47
Msa0103780	Msa0180750	0.811785	5.884717e-51	-8.615850e-47
Msa0114250	Msa0180750	0.800309	1.531217e-48	-8.615850e-47
Msa0141670	Msa0180750	0.811925	5.484890e-51	-8.615850e-47
Msa0143970	Msa0180750	0.801827	7.493807e-49	-8.615850e-47
Msa0157020	Msa0180750	0.816330	5.847117e-52	-8.615850e-47
Msa0159750	Msa0180750	0.800719	1.262911e-48	-8.615850e-47
Msa0168390	Msa0180750	0.817665	2.930810e-52	-8.615850e-47
Msa0180750	Msa0194570	0.804069	2.578053e-49	-8.615850e-47
Msa0180750	Msa0206940	0.815257	1.014227e-51	-8.615850e-47
Msa0180750	Msa0213080	0.827214	1.770505e-54	-8.615850e-47
Msa0180750	Msa0217470	0.834420	3.029404e-56	-8.615850e-47
Msa0180750	Msa0227500	0.802831	4.654690e-49	-8.615850e-47
Msa0180750	Msa0257310	0.803809	2.919262e-49	-8.615850e-47
Msa0180750	Msa0272420	0.810839	9.440314e-51	-8.615850e-47
Msa0180750	Msa0282860	0.816145	6.429263e-52	-8.615850e-47
Msa0180750	Msa0296610	0.825021	5.883500e-54	-8.615850e-47
Msa0180750	Msa0334980	0.809646	1.707155e-50	-8.615850e-47
Msa0180750	Msa0345140	0.809150	2.180806e-50	-8.615850e-47
Msa0180750	Msa0354490	0.805254	1.458946e-49	-8.615850e-47
Msa0180750	Msa0411560	0.834007	3.843589e-56	-8.615850e-47
Msa0180750	Msa0413180	0.814368	1.596544e-51	-8.615850e-47
Msa0180750	Msa0413740	0.834801	2.429463e-56	-8.615850e-47
Msa0180750	Msa0418000	0.802821	4.676067e-49	-8.615850e-47
Msa0180750	Msa0450460	0.816785	4.624120e-52	-8.615850e-47
Msa0180750	Msa0458110	0.824161	9.378656e-54	-8.615850e-47
Msa0180750	Msa0458790	0.807647	4.564169e-50	-8.615850e-47
Msa0180750	Msa0466100	0.803794	2.941294e-49	-8.615850e-47
Msa0180750	Msa0475740	0.803376	3.591380e-49	-8.615850e-47
Msa0180750	Msa0486530	0.835295	1.823997e-56	-8.615850e-47
Msa0180750	Msa0498320	0.804645	1.955284e-49	-8.615850e-47
Msa0180750	Msa0505390	0.836743	7.822873e-57	-8.615850e-47
Msa0180750	Msa0524050	0.822188	2.708098e-53	-8.615850e-47
Msa0180750	Msa0539320	0.809608	1.739617e-50	-8.615850e-47
Msa0180750	Msa0546380	0.824177	9.296115e-54	-8.615850e-47
Msa0180750	Msa0553350	0.831498	1.613690e-55	-8.615850e-47
Msa0180750	Msa0574170	0.807007	6.237260e-50	-8.615850e-47
Msa0180750	Msa0576420	0.808660	2.776789e-50	-8.615850e-47
Msa0180750	Msa0598250	0.822397	2.421076e-53	-8.615850e-47
Msa0180750	Msa0607300	0.810182	1.309222e-50	-8.615850e-47
Msa0180750	Msa0619330	0.816887	4.385904e-52	-8.615850e-47
Msa0180750	Msa0622390	0.814038	1.888086e-51	-8.615850e-47
Msa0180750	Msa0635130	0.804916	1.716375e-49	-8.615850e-47
Msa0180750	Msa0647710	0.810256	1.261658e-50	-8.615850e-47
Msa0180750	Msa0682400	0.805891	1.072602e-49	-8.615850e-47
Msa0180750	Msa0690350	0.819010	1.453454e-52	-8.615850e-47
Msa0180750	Msa0690530	0.815597	8.520352e-52	-8.615850e-47
Msa0180750	Msa0707780	0.811945	5.429920e-51	-8.615850e-47
Msa0180750	Msa0709480	0.801481	8.824808e-49	-8.615850e-47
Msa0180750	Msa0714020	0.803818	2.907638e-49	-8.615850e-47
Msa0180750	Msa0714160	0.805056	1.605208e-49	-8.615850e-47
Msa0180750	Msa0719340	0.834315	3.218625e-56	-8.615850e-47
Msa0180750	Msa0730180	0.804650	1.950901e-49	-8.615850e-47
Msa0180750	Msa0733000	0.808170	3.532918e-50	-8.615850e-47
Msa0180750	Msa0756480	0.817351	3.449190e-52	-8.615850e-47
Msa0180750	Msa0772150	0.819605	1.064096e-52	-8.615850e-47
Msa0180750	Msa0808420	0.803290	3.741369e-49	-8.615850e-47
Msa0180750	Msa0829570	0.808263	3.375058e-50	-8.615850e-47
Msa0180750	Msa0835510	0.804633	1.966781e-49	-8.615850e-47
Msa0180750	Msa0873830	0.806242	9.046782e-50	-8.615850e-47
Msa0180750	Msa0925160	0.819652	1.037949e-52	-8.615850e-47
Msa0180750	Msa0937940	0.811217	7.818890e-51	-8.615850e-47
Msa0180750	Msa0955260	0.813025	3.153355e-51	-8.615850e-47
Msa0180750	Msa0975080	0.802328	5.909503e-49	-8.615850e-47
Msa0180750	Msa1014350	0.801181	1.016559e-48	-8.615850e-47
Msa0180750	Msa1027790	0.805259	1.455254e-49	-8.615850e-47
Msa0180750	Msa1029430	0.810321	1.221941e-50	-8.615850e-47
Msa0180750	Msa1033160	0.807195	5.690048e-50	-8.615850e-47
Msa0180750	Msa1044040	0.825666	4.139363e-54	-8.615850e-47
Msa0180750	Msa1058980	0.804440	2.158326e-49	-8.615850e-47
Msa0180750	Msa1061180	0.804031	2.625001e-49	-8.615850e-47
Msa0180750	Msa1061520	0.824190	9.230331e-54	-8.615850e-47
Msa0180750	Msa1070900	0.813034	3.139263e-51	-8.615850e-47
Msa0180750	Msa1080620	0.802389	5.742040e-49	-8.615850e-47
Msa0180750	Msa1080690	0.800178	1.628159e-48	-8.615850e-47
Msa0180750	Msa1081850	0.819780	9.704057e-53	-8.615850e-47
Msa0180750	Msa1093390	0.812697	3.720799e-51	-8.615850e-47
Msa0180750	Msa1112610	0.823340	1.460311e-53	-8.615850e-47
Msa0180750	Msa1116010	0.847541	1.083423e-59	-8.615850e-47
Msa0180750	Msa1122510	0.842820	2.046640e-58	-8.615850e-47
Msa0180750	Msa1125780	0.801849	7.415687e-49	-8.615850e-47
Msa0180750	Msa1125950	0.800725	1.259490e-48	-8.615850e-47
Msa0180750	Msa1140010	0.809455	1.876606e-50	-8.615850e-47
Msa0180750	Msa1149760	0.814557	1.450152e-51	-8.615850e-47
Msa0180750	Msa1151120	0.812092	5.044749e-51	-8.615850e-47
Msa0180750	Msa1161160	0.820751	5.813536e-53	-8.615850e-47
Msa0180750	Msa1166180	0.800189	1.619921e-48	-8.615850e-47
Msa0180750	Msa1171340	0.804988	1.658096e-49	-8.615850e-47
Msa0180750	Msa1186210	0.808864	2.512127e-50	-8.615850e-47
Msa0180750	Msa1214900	0.821268	4.418384e-53	-8.615850e-47
Msa0180750	Msa1226360	0.825542	4.429378e-54	-8.615850e-47
Msa0180750	Msa1226600	0.822848	1.902145e-53	-8.615850e-47
Msa0180750	Msa1233770	0.817476	3.232583e-52	-8.615850e-47
Msa0180750	Msa1238480	0.812720	3.679028e-51	-8.615850e-47
Msa0180750	Msa1238700	0.803400	3.550322e-49	-8.615850e-47
Msa0180750	Msa1262310	0.825820	3.804484e-54	-8.615850e-47
Msa0180750	Msa1276080	0.806082	9.776552e-50	-8.615850e-47
Msa0180750	Msa1280020	0.823438	1.385321e-53	-8.615850e-47
Msa0180750	Msa1325980	0.804554	2.042693e-49	-8.615850e-47
Msa0180750	Msa1326000	0.834817	2.406576e-56	-8.615850e-47
Msa0180750	Msa1344430	0.806450	8.179046e-50	-8.615850e-47
Msa0180750	Msa1367940	0.806569	7.718777e-50	-8.615850e-47
Msa0180750	Msa1386020	0.811819	5.783960e-51	-8.615850e-47
Msa0180750	Msa1407710	0.807801	4.233155e-50	-8.615850e-47
Msa0180750	Msa1418200	0.818910	1.531690e-52	-8.615850e-47
Msa0180750	Msa1432470	0.800107	1.683085e-48	-8.615850e-47
Msa0180750	Msa1435040	0.802213	6.242583e-49	-8.615850e-47
Msa0180750	Msa1435470	0.803881	2.821332e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 50 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAATGGTAAACATGCAATTT+TGG	0.174838	1_4:+68743333	Msa0180750:five_prime_UTR
TGAATATGAACAACTCTTCT+AGG	0.250022	1_4:-68744899	None:intergenic
CAAAATTGAAAGCAGATGTT+TGG	0.274827	1_4:+68744812	Msa0180750:three_prime_UTR
CATGGATCAGAGCTCCAATT+TGG	0.291583	1_4:+68743658	Msa0180750:CDS
ATTGGCTATTGCATCCAAAT+TGG	0.293501	1_4:-68743672	None:intergenic
GAAGATACTCGACATTGTTT+TGG	0.298489	1_4:+68744737	Msa0180750:CDS
AAAACTTGCGTGAAATTTGT+AGG	0.303472	1_4:+68743298	Msa0180750:five_prime_UTR
ACGAATTGTGGGTGAGGTTT+GGG	0.312179	1_4:+68743442	Msa0180750:CDS
AACGAATTGTGGGTGAGGTT+TGG	0.319335	1_4:+68743441	Msa0180750:CDS
TAACGAAGAAAGTTTATAAC+AGG	0.330171	1_4:+68744850	Msa0180750:three_prime_UTR
CATGTGGCTGGAAATAGATT+TGG	0.332696	1_4:+68743365	Msa0180750:exon
AAAATTGAAAGCAGATGTTT+GGG	0.363097	1_4:+68744813	Msa0180750:three_prime_UTR
AAATTTGTAGGATTGCTTAT+AGG	0.376114	1_4:+68743310	Msa0180750:five_prime_UTR
ATTTGACATCTCTTGGTCAT+TGG	0.386363	1_4:-68743690	None:intergenic
CTCTGTAGAGTACTGTTAGT+TGG	0.388536	1_4:+68743635	Msa0180750:CDS
GTAGGATTGCTTATAGGTAA+TGG	0.408398	1_4:+68743316	Msa0180750:five_prime_UTR
ATATAAGCATGCAGTGGAAA+AGG	0.410802	1_4:+68743582	Msa0180750:intron
TAGAAGACCTGAAAACCAAT+TGG	0.413008	1_4:+68745020	Msa0180750:three_prime_UTR
AATGGGATAAGAGGAGAAGT+GGG	0.417607	1_4:+68743396	Msa0180750:CDS
GGTGTGTATATTAACCCAAT+TGG	0.421376	1_4:-68745035	None:intergenic
AATTGAGATTTGACATCTCT+TGG	0.426401	1_4:-68743697	None:intergenic
ATGTGGCTGGAAATAGATTT+GGG	0.438863	1_4:+68743366	Msa0180750:CDS
GTGACGACGAGTAGAGATAA+AGG	0.444468	1_4:+68744927	Msa0180750:three_prime_UTR
GGAAGTGAGAATGGGATAAG+AGG	0.451595	1_4:+68743387	Msa0180750:CDS
ATAGATTTGGGAAGTGAGAA+TGG	0.454150	1_4:+68743378	Msa0180750:CDS
AATTCGTTTACCTTCCCGTC+TGG	0.462290	1_4:-68743426	None:intergenic
TCTCAATTGCTGCTTTGTGC+AGG	0.467785	1_4:+68743712	Msa0180750:CDS
TAGAGTACTGTTAGTTGGCA+TGG	0.483395	1_4:+68743640	Msa0180750:CDS
TATAAGCATGCAGTGGAAAA+GGG	0.484401	1_4:+68743583	Msa0180750:intron
AAGTGGGGAGAGAGCCAGAC+GGG	0.486504	1_4:+68743412	Msa0180750:CDS
CAGACATTGCAAGCGCTTGA+GGG	0.486541	1_4:-68743480	None:intergenic
CAAATCTATTTCCAGCCACA+TGG	0.492033	1_4:-68743364	None:intergenic
CGGGAAGGTAAACGAATTGT+GGG	0.492647	1_4:+68743431	Msa0180750:CDS
ACAGACATTGCAAGCGCTTG+AGG	0.510509	1_4:-68743481	None:intergenic
AGAAGACCTGAAAACCAATT+GGG	0.515728	1_4:+68745021	Msa0180750:three_prime_UTR
GAATGGGATAAGAGGAGAAG+TGG	0.522318	1_4:+68743395	Msa0180750:CDS
ACGGGAAGGTAAACGAATTG+TGG	0.523434	1_4:+68743430	Msa0180750:CDS
TGGCACTCTACCCATGTGGC+TGG	0.529596	1_4:+68743353	Msa0180750:exon
TAGATTTGGGAAGTGAGAAT+GGG	0.530133	1_4:+68743379	Msa0180750:CDS
AGGTAAACGAATTGTGGGTG+AGG	0.558774	1_4:+68743436	Msa0180750:CDS
GGGGAGAGAGCCAGACGGGA+AGG	0.575105	1_4:+68743416	Msa0180750:CDS
TTCGAGTGCAAAATTGATCG+TGG	0.578384	1_4:+68743264	None:intergenic
ATTGTGGGTGAGGTTTGGGA+AGG	0.588511	1_4:+68743446	Msa0180750:CDS
TCGAGTGCAAAATTGATCGT+GGG	0.593496	1_4:+68743265	Msa0180750:five_prime_UTR
ATGGGATAAGAGGAGAAGTG+GGG	0.594766	1_4:+68743397	Msa0180750:CDS
AAGGATATTGATGCATGGAA+AGG	0.595528	1_4:+68744946	Msa0180750:three_prime_UTR
AGACATTGCAAGCGCTTGAG+GGG	0.598037	1_4:-68743479	None:intergenic
AAATCTATTTCCAGCCACAT+GGG	0.611217	1_4:-68743363	None:intergenic
AGATAAAGGATATTGATGCA+TGG	0.627402	1_4:+68744941	Msa0180750:three_prime_UTR
GAAGTGGGGAGAGAGCCAGA+CGG	0.628004	1_4:+68743411	Msa0180750:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GTATATTTTTGTATTTAATT+AGG	+	chr1_4:68744635-68744654	Msa0180750:intron	10.0%
!!!	GTATATTTTTGTATTTAATT+AGG	+	chr1_4:68744635-68744654	Msa0180750:intron	10.0%
!!	CTACTAAAATTTAGTTAATT+TGG	-	chr1_4:68743917-68743936	None:intergenic	15.0%
!!!	CAAATTAACTAAATTTTAGT+AGG	+	chr1_4:68743915-68743934	Msa0180750:intron	15.0%
!!	CTACTAAAATTTAGTTAATT+TGG	-	chr1_4:68743917-68743936	None:intergenic	15.0%
!!!	CAAATTAACTAAATTTTAGT+AGG	+	chr1_4:68743915-68743934	Msa0180750:intron	15.0%
!!!	TTTTCCTTTCTGTTTTATTA+TGG	+	chr1_4:68743507-68743526	Msa0180750:intron	20.0%
!!	AAATCCATAATAAAACAGAA+AGG	-	chr1_4:68743514-68743533	None:intergenic	20.0%
!!!	ACAGAGAAATTTTTTAAGAA+GGG	-	chr1_4:68743621-68743640	None:intergenic	20.0%
!!!	TACAGAGAAATTTTTTAAGA+AGG	-	chr1_4:68743622-68743641	None:intergenic	20.0%
!!	TTGGAATTAATTAGCTAATT+TGG	-	chr1_4:68743898-68743917	None:intergenic	20.0%
!!	CTAAATTAAGAACATATTTC+AGG	-	chr1_4:68743990-68744009	None:intergenic	20.0%
!!	AAAGTTGAAATAAAACAGAA+AGG	-	chr1_4:68744190-68744209	None:intergenic	20.0%
!!!	ATTTTCAACTCATTTTAGAA+CGG	+	chr1_4:68744216-68744235	Msa0180750:intron	20.0%
!!	TAATATCTTGTCTAATGAAT+GGG	+	chr1_4:68744574-68744593	Msa0180750:intron	20.0%
!!	TATAAGACAAGAATATTCTT+TGG	+	chr1_4:68744672-68744691	Msa0180750:intron	20.0%
!!	ATAAGACAAGAATATTCTTT+GGG	+	chr1_4:68744673-68744692	Msa0180750:intron	20.0%
!!!	TTTTCCTTTCTGTTTTATTA+TGG	+	chr1_4:68743507-68743526	Msa0180750:intron	20.0%
!!	AAATCCATAATAAAACAGAA+AGG	-	chr1_4:68743514-68743533	None:intergenic	20.0%
!!!	ACAGAGAAATTTTTTAAGAA+GGG	-	chr1_4:68743621-68743640	None:intergenic	20.0%
!!!	TACAGAGAAATTTTTTAAGA+AGG	-	chr1_4:68743622-68743641	None:intergenic	20.0%
!!	TTGGAATTAATTAGCTAATT+TGG	-	chr1_4:68743898-68743917	None:intergenic	20.0%
!!	CTAAATTAAGAACATATTTC+AGG	-	chr1_4:68743990-68744009	None:intergenic	20.0%
!!	AAAGTTGAAATAAAACAGAA+AGG	-	chr1_4:68744190-68744209	None:intergenic	20.0%
!!!	ATTTTCAACTCATTTTAGAA+CGG	+	chr1_4:68744216-68744235	Msa0180750:intron	20.0%
!!	TAATATCTTGTCTAATGAAT+GGG	+	chr1_4:68744574-68744593	Msa0180750:intron	20.0%
!!	TATAAGACAAGAATATTCTT+TGG	+	chr1_4:68744672-68744691	Msa0180750:intron	20.0%
!!	ATAAGACAAGAATATTCTTT+GGG	+	chr1_4:68744673-68744692	Msa0180750:intron	20.0%
!	AAATTTGTAGGATTGCTTAT+AGG	+	chr1_4:68743310-68743329	Msa0180750:five_prime_UTR	25.0%
!!	TAATGGTAAACATGCAATTT+TGG	+	chr1_4:68743333-68743352	Msa0180750:five_prime_UTR	25.0%
!	ATATATCTACCTCTTTCTAA+AGG	+	chr1_4:68743862-68743881	Msa0180750:intron	25.0%
!!	ATTAGCTAATTTGGAATTCT+GGG	-	chr1_4:68743889-68743908	None:intergenic	25.0%
!!	AATTAGCTAATTTGGAATTC+TGG	-	chr1_4:68743890-68743909	None:intergenic	25.0%
!	AAAAAAGACATTGTACATCT+AGG	-	chr1_4:68744167-68744186	None:intergenic	25.0%
!	GTAAATTATCTCCAAAATGT+CGG	-	chr1_4:68744379-68744398	None:intergenic	25.0%
!	ATGATGATTATGAATGCTAA+CGG	-	chr1_4:68744401-68744420	None:intergenic	25.0%
!	GTAATATCTTGTCTAATGAA+TGG	+	chr1_4:68744573-68744592	Msa0180750:intron	25.0%
!	AAAATTGAAAGCAGATGTTT+GGG	+	chr1_4:68744813-68744832	Msa0180750:three_prime_UTR	25.0%
!	TAACGAAGAAAGTTTATAAC+AGG	+	chr1_4:68744850-68744869	Msa0180750:three_prime_UTR	25.0%
!!!	GGTTTCTACATTTTTTTGAT+AGG	+	chr1_4:68744871-68744890	Msa0180750:three_prime_UTR	25.0%
!	AAATTTGTAGGATTGCTTAT+AGG	+	chr1_4:68743310-68743329	Msa0180750:five_prime_UTR	25.0%
!!	TAATGGTAAACATGCAATTT+TGG	+	chr1_4:68743333-68743352	Msa0180750:five_prime_UTR	25.0%
!	ATATATCTACCTCTTTCTAA+AGG	+	chr1_4:68743862-68743881	Msa0180750:intron	25.0%
!!	ATTAGCTAATTTGGAATTCT+GGG	-	chr1_4:68743889-68743908	None:intergenic	25.0%
!!	AATTAGCTAATTTGGAATTC+TGG	-	chr1_4:68743890-68743909	None:intergenic	25.0%
!	AAAAAAGACATTGTACATCT+AGG	-	chr1_4:68744167-68744186	None:intergenic	25.0%
!	GTAAATTATCTCCAAAATGT+CGG	-	chr1_4:68744379-68744398	None:intergenic	25.0%
!	ATGATGATTATGAATGCTAA+CGG	-	chr1_4:68744401-68744420	None:intergenic	25.0%
!	GTAATATCTTGTCTAATGAA+TGG	+	chr1_4:68744573-68744592	Msa0180750:intron	25.0%
!	AAAATTGAAAGCAGATGTTT+GGG	+	chr1_4:68744813-68744832	Msa0180750:three_prime_UTR	25.0%
!	TAACGAAGAAAGTTTATAAC+AGG	+	chr1_4:68744850-68744869	Msa0180750:three_prime_UTR	25.0%
!!!	GGTTTCTACATTTTTTTGAT+AGG	+	chr1_4:68744871-68744890	Msa0180750:three_prime_UTR	25.0%
	AAAACTTGCGTGAAATTTGT+AGG	+	chr1_4:68743298-68743317	Msa0180750:five_prime_UTR	30.0%
!!!	ATTTTTTAAGAAGGGAACGA+AGG	-	chr1_4:68743613-68743632	None:intergenic	30.0%
	AATTGAGATTTGACATCTCT+TGG	-	chr1_4:68743700-68743719	None:intergenic	30.0%
	AAACTACCTACCATATAACA+TGG	-	chr1_4:68743946-68743965	None:intergenic	30.0%
	AAAACTGTGAAGTCATATGA+AGG	-	chr1_4:68744088-68744107	None:intergenic	30.0%
	AATTGAACTTCAAATACTGC+AGG	+	chr1_4:68744447-68744466	Msa0180750:intron	30.0%
!!	ATGATAGTCAGAGGTTTTAA+AGG	+	chr1_4:68744472-68744491	Msa0180750:intron	30.0%
	AATTAGTGTCAGAATCATCT+AGG	+	chr1_4:68744518-68744537	Msa0180750:intron	30.0%
	AGACAAGATATTACACAGAA+AGG	-	chr1_4:68744567-68744586	None:intergenic	30.0%
	ATGTTGATCAGTAATCTTGT+AGG	+	chr1_4:68744707-68744726	Msa0180750:intron	30.0%
	CAAAATTGAAAGCAGATGTT+TGG	+	chr1_4:68744812-68744831	Msa0180750:three_prime_UTR	30.0%
	TGAATATGAACAACTCTTCT+AGG	-	chr1_4:68744902-68744921	None:intergenic	30.0%
	AGATAAAGGATATTGATGCA+TGG	+	chr1_4:68744941-68744960	Msa0180750:three_prime_UTR	30.0%
!!!	TATTAACCCAATTGGTTTTC+AGG	-	chr1_4:68745030-68745049	None:intergenic	30.0%
	AAAACTTGCGTGAAATTTGT+AGG	+	chr1_4:68743298-68743317	Msa0180750:five_prime_UTR	30.0%
!!!	ATTTTTTAAGAAGGGAACGA+AGG	-	chr1_4:68743613-68743632	None:intergenic	30.0%
	AATTGAGATTTGACATCTCT+TGG	-	chr1_4:68743700-68743719	None:intergenic	30.0%
	AAACTACCTACCATATAACA+TGG	-	chr1_4:68743946-68743965	None:intergenic	30.0%
	AAAACTGTGAAGTCATATGA+AGG	-	chr1_4:68744088-68744107	None:intergenic	30.0%
	AATTGAACTTCAAATACTGC+AGG	+	chr1_4:68744447-68744466	Msa0180750:intron	30.0%
!!	ATGATAGTCAGAGGTTTTAA+AGG	+	chr1_4:68744472-68744491	Msa0180750:intron	30.0%
	AATTAGTGTCAGAATCATCT+AGG	+	chr1_4:68744518-68744537	Msa0180750:intron	30.0%
	AGACAAGATATTACACAGAA+AGG	-	chr1_4:68744567-68744586	None:intergenic	30.0%
	ATGTTGATCAGTAATCTTGT+AGG	+	chr1_4:68744707-68744726	Msa0180750:intron	30.0%
	CAAAATTGAAAGCAGATGTT+TGG	+	chr1_4:68744812-68744831	Msa0180750:three_prime_UTR	30.0%
	TGAATATGAACAACTCTTCT+AGG	-	chr1_4:68744902-68744921	None:intergenic	30.0%
	AGATAAAGGATATTGATGCA+TGG	+	chr1_4:68744941-68744960	Msa0180750:three_prime_UTR	30.0%
!!!	TATTAACCCAATTGGTTTTC+AGG	-	chr1_4:68745030-68745049	None:intergenic	30.0%
!	TTTCACGCAAGTTTTTCATC+TGG	-	chr1_4:68743293-68743312	None:intergenic	35.0%
	GTAGGATTGCTTATAGGTAA+TGG	+	chr1_4:68743316-68743335	Msa0180750:five_prime_UTR	35.0%
	AAATCTATTTCCAGCCACAT+GGG	-	chr1_4:68743366-68743385	None:intergenic	35.0%
	ATGTGGCTGGAAATAGATTT+GGG	+	chr1_4:68743366-68743385	Msa0180750:CDS	35.0%
	ATAGATTTGGGAAGTGAGAA+TGG	+	chr1_4:68743378-68743397	Msa0180750:CDS	35.0%
	TAGATTTGGGAAGTGAGAAT+GGG	+	chr1_4:68743379-68743398	Msa0180750:CDS	35.0%
	TTCTTCATATAAGCATGCAG+TGG	+	chr1_4:68743576-68743595	Msa0180750:intron	35.0%
	ATATAAGCATGCAGTGGAAA+AGG	+	chr1_4:68743582-68743601	Msa0180750:intron	35.0%
	TATAAGCATGCAGTGGAAAA+GGG	+	chr1_4:68743583-68743602	Msa0180750:intron	35.0%
	ATTGGCTATTGCATCCAAAT+TGG	-	chr1_4:68743675-68743694	None:intergenic	35.0%
	ATTTGACATCTCTTGGTCAT+TGG	-	chr1_4:68743693-68743712	None:intergenic	35.0%
!!!	ACACTCTATCTCTAGGATTT+TGG	+	chr1_4:68743803-68743822	Msa0180750:intron	35.0%
	GTAGGCTTTACCATGTTATA+TGG	+	chr1_4:68743933-68743952	Msa0180750:intron	35.0%
	GCTTTACCATGTTATATGGT+AGG	+	chr1_4:68743937-68743956	Msa0180750:intron	35.0%
!!	ATATTTCAGGTTCCAGAACT+GGG	-	chr1_4:68743977-68743996	None:intergenic	35.0%
!	ATCATCACTAACCGACATTT+TGG	+	chr1_4:68744365-68744384	Msa0180750:intron	35.0%
!	GAAGATACTCGACATTGTTT+TGG	+	chr1_4:68744737-68744756	Msa0180750:CDS	35.0%
!!!	ACTCGACATTGTTTTGGATA+AGG	+	chr1_4:68744743-68744762	Msa0180750:CDS	35.0%
	AAGGATATTGATGCATGGAA+AGG	+	chr1_4:68744946-68744965	Msa0180750:three_prime_UTR	35.0%
	TAGAAGACCTGAAAACCAAT+TGG	+	chr1_4:68745020-68745039	Msa0180750:three_prime_UTR	35.0%
	AGAAGACCTGAAAACCAATT+GGG	+	chr1_4:68745021-68745040	Msa0180750:three_prime_UTR	35.0%
	GGTGTGTATATTAACCCAAT+TGG	-	chr1_4:68745038-68745057	None:intergenic	35.0%
!	TTTCACGCAAGTTTTTCATC+TGG	-	chr1_4:68743293-68743312	None:intergenic	35.0%
	GTAGGATTGCTTATAGGTAA+TGG	+	chr1_4:68743316-68743335	Msa0180750:five_prime_UTR	35.0%
	AAATCTATTTCCAGCCACAT+GGG	-	chr1_4:68743366-68743385	None:intergenic	35.0%
	ATGTGGCTGGAAATAGATTT+GGG	+	chr1_4:68743366-68743385	Msa0180750:CDS	35.0%
	ATAGATTTGGGAAGTGAGAA+TGG	+	chr1_4:68743378-68743397	Msa0180750:CDS	35.0%
	TAGATTTGGGAAGTGAGAAT+GGG	+	chr1_4:68743379-68743398	Msa0180750:CDS	35.0%
	TTCTTCATATAAGCATGCAG+TGG	+	chr1_4:68743576-68743595	Msa0180750:intron	35.0%
	ATATAAGCATGCAGTGGAAA+AGG	+	chr1_4:68743582-68743601	Msa0180750:intron	35.0%
	TATAAGCATGCAGTGGAAAA+GGG	+	chr1_4:68743583-68743602	Msa0180750:intron	35.0%
	ATTGGCTATTGCATCCAAAT+TGG	-	chr1_4:68743675-68743694	None:intergenic	35.0%
	ATTTGACATCTCTTGGTCAT+TGG	-	chr1_4:68743693-68743712	None:intergenic	35.0%
!!!	ACACTCTATCTCTAGGATTT+TGG	+	chr1_4:68743803-68743822	Msa0180750:intron	35.0%
	GTAGGCTTTACCATGTTATA+TGG	+	chr1_4:68743933-68743952	Msa0180750:intron	35.0%
	GCTTTACCATGTTATATGGT+AGG	+	chr1_4:68743937-68743956	Msa0180750:intron	35.0%
!!	ATATTTCAGGTTCCAGAACT+GGG	-	chr1_4:68743977-68743996	None:intergenic	35.0%
!	ATCATCACTAACCGACATTT+TGG	+	chr1_4:68744365-68744384	Msa0180750:intron	35.0%
!	GAAGATACTCGACATTGTTT+TGG	+	chr1_4:68744737-68744756	Msa0180750:CDS	35.0%
!!!	ACTCGACATTGTTTTGGATA+AGG	+	chr1_4:68744743-68744762	Msa0180750:CDS	35.0%
	AAGGATATTGATGCATGGAA+AGG	+	chr1_4:68744946-68744965	Msa0180750:three_prime_UTR	35.0%
	TAGAAGACCTGAAAACCAAT+TGG	+	chr1_4:68745020-68745039	Msa0180750:three_prime_UTR	35.0%
	AGAAGACCTGAAAACCAATT+GGG	+	chr1_4:68745021-68745040	Msa0180750:three_prime_UTR	35.0%
	GGTGTGTATATTAACCCAAT+TGG	-	chr1_4:68745038-68745057	None:intergenic	35.0%
	TCGAGTGCAAAATTGATCGT+GGG	+	chr1_4:68743265-68743284	Msa0180750:five_prime_UTR	40.0%
	CAAATCTATTTCCAGCCACA+TGG	-	chr1_4:68743367-68743386	None:intergenic	40.0%
	CATGTGGCTGGAAATAGATT+TGG	+	chr1_4:68743365-68743384	Msa0180750:exon	40.0%
	AATGGGATAAGAGGAGAAGT+GGG	+	chr1_4:68743396-68743415	Msa0180750:CDS	40.0%
!!	TTTTAAGAAGGGAACGAAGG+AGG	-	chr1_4:68743610-68743629	None:intergenic	40.0%
!!	CTCTGTAGAGTACTGTTAGT+TGG	+	chr1_4:68743635-68743654	Msa0180750:CDS	40.0%
!!	TAGAGTACTGTTAGTTGGCA+TGG	+	chr1_4:68743640-68743659	Msa0180750:CDS	40.0%
	TCTCTAGACACTCTATCTCT+AGG	+	chr1_4:68743796-68743815	Msa0180750:intron	40.0%
!	ATTCTGGGTCCTTTAGAAAG+AGG	-	chr1_4:68743874-68743893	None:intergenic	40.0%
	GTTTGATTAGAACCCAGTTC+TGG	+	chr1_4:68743962-68743981	Msa0180750:intron	40.0%
!!	CATATTTCAGGTTCCAGAAC+TGG	-	chr1_4:68743978-68743997	None:intergenic	40.0%
	ATGAACCTGGGAAATTTGCA+CGG	-	chr1_4:68744144-68744163	None:intergenic	40.0%
!	TGTACATCTAGGATGAACCT+GGG	-	chr1_4:68744156-68744175	None:intergenic	40.0%
!	TTGTACATCTAGGATGAACC+TGG	-	chr1_4:68744157-68744176	None:intergenic	40.0%
	TGCTTTCACATACCTCTCAT+CGG	+	chr1_4:68744340-68744359	Msa0180750:intron	40.0%
!	TCATCTAGGACAGTTGTCAT+AGG	+	chr1_4:68744532-68744551	Msa0180750:intron	40.0%
!!!	TGAATGGGATATGCCACTTT+TGG	+	chr1_4:68744589-68744608	Msa0180750:intron	40.0%
	GCTCTTACTGTTTCCAAAAG+TGG	-	chr1_4:68744605-68744624	None:intergenic	40.0%
!	ACGATCAATTTTGCACTCGA+CGG	-	chr1_4:68743265-68743284	None:intergenic	40.0%
	TCGAGTGCAAAATTGATCGT+GGG	+	chr1_4:68743265-68743284	Msa0180750:five_prime_UTR	40.0%
	CAAATCTATTTCCAGCCACA+TGG	-	chr1_4:68743367-68743386	None:intergenic	40.0%
	CATGTGGCTGGAAATAGATT+TGG	+	chr1_4:68743365-68743384	Msa0180750:exon	40.0%
	AATGGGATAAGAGGAGAAGT+GGG	+	chr1_4:68743396-68743415	Msa0180750:CDS	40.0%
!!	TTTTAAGAAGGGAACGAAGG+AGG	-	chr1_4:68743610-68743629	None:intergenic	40.0%
!!	CTCTGTAGAGTACTGTTAGT+TGG	+	chr1_4:68743635-68743654	Msa0180750:CDS	40.0%
!!	TAGAGTACTGTTAGTTGGCA+TGG	+	chr1_4:68743640-68743659	Msa0180750:CDS	40.0%
	TCTCTAGACACTCTATCTCT+AGG	+	chr1_4:68743796-68743815	Msa0180750:intron	40.0%
!	ATTCTGGGTCCTTTAGAAAG+AGG	-	chr1_4:68743874-68743893	None:intergenic	40.0%
	GTTTGATTAGAACCCAGTTC+TGG	+	chr1_4:68743962-68743981	Msa0180750:intron	40.0%
!!	CATATTTCAGGTTCCAGAAC+TGG	-	chr1_4:68743978-68743997	None:intergenic	40.0%
	ATGAACCTGGGAAATTTGCA+CGG	-	chr1_4:68744144-68744163	None:intergenic	40.0%
!	TGTACATCTAGGATGAACCT+GGG	-	chr1_4:68744156-68744175	None:intergenic	40.0%
!	TTGTACATCTAGGATGAACC+TGG	-	chr1_4:68744157-68744176	None:intergenic	40.0%
	TGCTTTCACATACCTCTCAT+CGG	+	chr1_4:68744340-68744359	Msa0180750:intron	40.0%
!	TCATCTAGGACAGTTGTCAT+AGG	+	chr1_4:68744532-68744551	Msa0180750:intron	40.0%
!!!	TGAATGGGATATGCCACTTT+TGG	+	chr1_4:68744589-68744608	Msa0180750:intron	40.0%
	GCTCTTACTGTTTCCAAAAG+TGG	-	chr1_4:68744605-68744624	None:intergenic	40.0%
!!	ATTTTGGCACTCTACCCATG+TGG	+	chr1_4:68743349-68743368	Msa0180750:exon	45.0%
	GGAAGTGAGAATGGGATAAG+AGG	+	chr1_4:68743387-68743406	Msa0180750:CDS	45.0%
	GAATGGGATAAGAGGAGAAG+TGG	+	chr1_4:68743395-68743414	Msa0180750:CDS	45.0%
	ATGGGATAAGAGGAGAAGTG+GGG	+	chr1_4:68743397-68743416	Msa0180750:CDS	45.0%
	AATTCGTTTACCTTCCCGTC+TGG	-	chr1_4:68743429-68743448	None:intergenic	45.0%
	ACGGGAAGGTAAACGAATTG+TGG	+	chr1_4:68743430-68743449	Msa0180750:CDS	45.0%
	CGGGAAGGTAAACGAATTGT+GGG	+	chr1_4:68743431-68743450	Msa0180750:CDS	45.0%
	AGGTAAACGAATTGTGGGTG+AGG	+	chr1_4:68743436-68743455	Msa0180750:CDS	45.0%
	AACGAATTGTGGGTGAGGTT+TGG	+	chr1_4:68743441-68743460	Msa0180750:CDS	45.0%
	ACGAATTGTGGGTGAGGTTT+GGG	+	chr1_4:68743442-68743461	Msa0180750:CDS	45.0%
	CATGGATCAGAGCTCCAATT+TGG	+	chr1_4:68743658-68743677	Msa0180750:CDS	45.0%
!!	TCTCAATTGCTGCTTTGTGC+AGG	+	chr1_4:68743712-68743731	Msa0180750:CDS	45.0%
!	TAGTGATGATGACCGATGAG+AGG	-	chr1_4:68744355-68744374	None:intergenic	45.0%
	GTGACGACGAGTAGAGATAA+AGG	+	chr1_4:68744927-68744946	Msa0180750:three_prime_UTR	45.0%
!!	ATTTTGGCACTCTACCCATG+TGG	+	chr1_4:68743349-68743368	Msa0180750:exon	45.0%
	GGAAGTGAGAATGGGATAAG+AGG	+	chr1_4:68743387-68743406	Msa0180750:CDS	45.0%
	GAATGGGATAAGAGGAGAAG+TGG	+	chr1_4:68743395-68743414	Msa0180750:CDS	45.0%
	ATGGGATAAGAGGAGAAGTG+GGG	+	chr1_4:68743397-68743416	Msa0180750:CDS	45.0%
	AATTCGTTTACCTTCCCGTC+TGG	-	chr1_4:68743429-68743448	None:intergenic	45.0%
	ACGGGAAGGTAAACGAATTG+TGG	+	chr1_4:68743430-68743449	Msa0180750:CDS	45.0%
	CGGGAAGGTAAACGAATTGT+GGG	+	chr1_4:68743431-68743450	Msa0180750:CDS	45.0%
	AGGTAAACGAATTGTGGGTG+AGG	+	chr1_4:68743436-68743455	Msa0180750:CDS	45.0%
	AACGAATTGTGGGTGAGGTT+TGG	+	chr1_4:68743441-68743460	Msa0180750:CDS	45.0%
	ACGAATTGTGGGTGAGGTTT+GGG	+	chr1_4:68743442-68743461	Msa0180750:CDS	45.0%
	CATGGATCAGAGCTCCAATT+TGG	+	chr1_4:68743658-68743677	Msa0180750:CDS	45.0%
!!	TCTCAATTGCTGCTTTGTGC+AGG	+	chr1_4:68743712-68743731	Msa0180750:CDS	45.0%
!	TAGTGATGATGACCGATGAG+AGG	-	chr1_4:68744355-68744374	None:intergenic	45.0%
	GTGACGACGAGTAGAGATAA+AGG	+	chr1_4:68744927-68744946	Msa0180750:three_prime_UTR	45.0%
	ATTGTGGGTGAGGTTTGGGA+AGG	+	chr1_4:68743446-68743465	Msa0180750:CDS	50.0%
	AGACATTGCAAGCGCTTGAG+GGG	-	chr1_4:68743482-68743501	None:intergenic	50.0%
	CAGACATTGCAAGCGCTTGA+GGG	-	chr1_4:68743483-68743502	None:intergenic	50.0%
	ACAGACATTGCAAGCGCTTG+AGG	-	chr1_4:68743484-68743503	None:intergenic	50.0%
	CTGCAGGCTATGATAGTCAG+AGG	+	chr1_4:68744463-68744482	Msa0180750:intron	50.0%
	ATTGTGGGTGAGGTTTGGGA+AGG	+	chr1_4:68743446-68743465	Msa0180750:CDS	50.0%
	AGACATTGCAAGCGCTTGAG+GGG	-	chr1_4:68743482-68743501	None:intergenic	50.0%
	CAGACATTGCAAGCGCTTGA+GGG	-	chr1_4:68743483-68743502	None:intergenic	50.0%
	ACAGACATTGCAAGCGCTTG+AGG	-	chr1_4:68743484-68743503	None:intergenic	50.0%
	CTGCAGGCTATGATAGTCAG+AGG	+	chr1_4:68744463-68744482	Msa0180750:intron	50.0%
	CCTGGGAAATTTGCACGGCA+TGG	-	chr1_4:68744139-68744158	None:intergenic	55.0%
	CCATGCCGTGCAAATTTCCC+AGG	+	chr1_4:68744136-68744155	Msa0180750:intron	55.0%
	CCTGGGAAATTTGCACGGCA+TGG	-	chr1_4:68744139-68744158	None:intergenic	55.0%
	CCATGCCGTGCAAATTTCCC+AGG	+	chr1_4:68744136-68744155	Msa0180750:intron	55.0%
	TGGCACTCTACCCATGTGGC+TGG	+	chr1_4:68743353-68743372	Msa0180750:exon	60.0%
	GAAGTGGGGAGAGAGCCAGA+CGG	+	chr1_4:68743411-68743430	Msa0180750:CDS	60.0%
	AAGTGGGGAGAGAGCCAGAC+GGG	+	chr1_4:68743412-68743431	Msa0180750:CDS	60.0%
	TGGCACTCTACCCATGTGGC+TGG	+	chr1_4:68743353-68743372	Msa0180750:exon	60.0%
	GAAGTGGGGAGAGAGCCAGA+CGG	+	chr1_4:68743411-68743430	Msa0180750:CDS	60.0%
	AAGTGGGGAGAGAGCCAGAC+GGG	+	chr1_4:68743412-68743431	Msa0180750:CDS	60.0%
	GGGGAGAGAGCCAGACGGGA+AGG	+	chr1_4:68743416-68743435	Msa0180750:CDS	70.0%
	GGGGAGAGAGCCAGACGGGA+AGG	+	chr1_4:68743416-68743435	Msa0180750:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	68743265	68745059	68743265	ID=Msa0180750;Name=Msa0180750
chr1_4	mRNA	68743265	68745059	68743265	ID=Msa0180750-mRNA-1;Parent=Msa0180750;Name=Msa0180750-mRNA-1;_AED=0.40;_eAED=0.40;_QI=101\|0.5\|0.66\|1\|1\|1\|3\|259\|127
chr1_4	exon	68743265	68743497	68743265	ID=Msa0180750-mRNA-1:exon:22722;Parent=Msa0180750-mRNA-1
chr1_4	exon	68743596	68743775	68743596	ID=Msa0180750-mRNA-1:exon:22723;Parent=Msa0180750-mRNA-1
chr1_4	exon	68744729	68745059	68744729	ID=Msa0180750-mRNA-1:exon:22724;Parent=Msa0180750-mRNA-1
chr1_4	five_prime_UTR	68743265	68743365	68743265	ID=Msa0180750-mRNA-1:five_prime_utr;Parent=Msa0180750-mRNA-1
chr1_4	CDS	68743366	68743497	68743366	ID=Msa0180750-mRNA-1:cds;Parent=Msa0180750-mRNA-1
chr1_4	CDS	68743596	68743775	68743596	ID=Msa0180750-mRNA-1:cds;Parent=Msa0180750-mRNA-1
chr1_4	CDS	68744729	68744800	68744729	ID=Msa0180750-mRNA-1:cds;Parent=Msa0180750-mRNA-1
chr1_4	three_prime_UTR	68744801	68745059	68744801	ID=Msa0180750-mRNA-1:three_prime_utr;Parent=Msa0180750-mRNA-1

Gene Sequence

>Msa0180750

ATGTGGCTGGAAATAGATTTGGGAAGTGAGAATGGGATAAGAGGAGAAGTGGGGAGAGAGCCAGACGGGAAGGTAAACGAATTGTGGGTGAGGTTTGGGAAGGAGAAAACAAACCCCTCAAGCGCTTGCAATTGGAAAAGGGACCTCCTTCGTTCCCTTCTTAAAAAATTTCTCTGTAGAGTACTGTTAGTTGGCATGGATCAGAGCTCCAATTTGGATGCAATAGCCAATGACCAAGAGATGTCAAATCTCAATTGCTGCTTTGTGCAGGAGAATCTACGTCTCTCTGAACATATTTTCAGTCAATGTGAAGTTTTTACGAAGATACTCGACATTGTTTTGGATAAGGCTACTTTAGAAACATTTTCGACGAGAAGTATCTAA

Protein sequence

>Msa0180750

MWLEIDLGSENGIRGEVGREPDGKVNELWVRFGKEKTNPSSACNWKRDLLRSLLKKFLCRVLLVGMDQSSNLDAIANDQEMSNLNCCFVQENLRLSEHIFSQCEVFTKILDIVLDKATLETFSTRSI*