Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424990 | XP_003602264.1 | 93.099 | 797 | 24 | 1 | 1 | 766 | 1 | 797 | 0.0 | 1503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424990 | G7J7F4 | 93.099 | 797 | 24 | 1 | 1 | 766 | 1 | 797 | 0.0 | 1503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029850 | Msa0424990 | 0.824752 | 6.807081e-54 | -8.615850e-47 |
| Msa0048000 | Msa0424990 | 0.836258 | 1.039720e-56 | -8.615850e-47 |
| Msa0050760 | Msa0424990 | 0.801905 | 7.220096e-49 | -8.615850e-47 |
| Msa0077180 | Msa0424990 | 0.809510 | 1.825932e-50 | -8.615850e-47 |
| Msa0077450 | Msa0424990 | 0.845285 | 4.467555e-59 | -8.615850e-47 |
| Msa0102750 | Msa0424990 | 0.800937 | 1.140220e-48 | -8.615850e-47 |
| Msa0120340 | Msa0424990 | 0.828662 | 7.936844e-55 | -8.615850e-47 |
| Msa0122590 | Msa0424990 | 0.809778 | 1.599005e-50 | -8.615850e-47 |
| Msa0169820 | Msa0424990 | 0.832353 | 9.921871e-56 | -8.615850e-47 |
| Msa0170140 | Msa0424990 | 0.846143 | 2.613872e-59 | -8.615850e-47 |
| Msa0199800 | Msa0424990 | -0.813741 | 2.194967e-51 | -8.615850e-47 |
| Msa0217400 | Msa0424990 | 0.815104 | 1.097018e-51 | -8.615850e-47 |
| Msa0376590 | Msa0424990 | 0.872053 | 4.271468e-67 | -8.615850e-47 |
| Msa0377530 | Msa0424990 | 0.807886 | 4.059377e-50 | -8.615850e-47 |
| Msa0389340 | Msa0424990 | 0.803102 | 4.090853e-49 | -8.615850e-47 |
| Msa0389810 | Msa0424990 | 0.803531 | 3.334622e-49 | -8.615850e-47 |
| Msa0424990 | Msa0436370 | 0.891322 | 4.413812e-74 | -8.615850e-47 |
| Msa0424990 | Msa0448550 | -0.805752 | 1.146712e-49 | -8.615850e-47 |
| Msa0424990 | Msa0458440 | 0.812383 | 4.358056e-51 | -8.615850e-47 |
| Msa0424990 | Msa0464900 | 0.812768 | 3.591091e-51 | -8.615850e-47 |
| Msa0424990 | Msa0467930 | 0.824081 | 9.792652e-54 | -8.615850e-47 |
| Msa0424990 | Msa0468130 | 0.800167 | 1.636147e-48 | -8.615850e-47 |
| Msa0424990 | Msa0473240 | 0.820780 | 5.723263e-53 | -8.615850e-47 |
| Msa0424990 | Msa0482190 | -0.809490 | 1.844216e-50 | -8.615850e-47 |
| Msa0424990 | Msa0484780 | 0.816223 | 6.176527e-52 | -8.615850e-47 |
| Msa0424990 | Msa0485500 | -0.802766 | 4.801422e-49 | -8.615850e-47 |
| Msa0424990 | Msa0516370 | 0.878294 | 3.156196e-69 | -8.615850e-47 |
| Msa0424990 | Msa0517490 | 0.820895 | 5.386848e-53 | -8.615850e-47 |
| Msa0424990 | Msa0536220 | 0.801341 | 9.425373e-49 | -8.615850e-47 |
| Msa0424990 | Msa0553460 | 0.806662 | 7.378873e-50 | -8.615850e-47 |
| Msa0424990 | Msa0567020 | 0.821813 | 3.306402e-53 | -8.615850e-47 |
| Msa0424990 | Msa0572420 | 0.870482 | 1.411161e-66 | -8.615850e-47 |
| Msa0424990 | Msa0572480 | 0.866843 | 2.119330e-65 | -8.615850e-47 |
| Msa0424990 | Msa0581050 | 0.811471 | 6.887701e-51 | -8.615850e-47 |
| Msa0424990 | Msa0599580 | 0.802592 | 5.214812e-49 | -8.615850e-47 |
| Msa0424990 | Msa0613090 | 0.806462 | 8.131855e-50 | -8.615850e-47 |
| Msa0424990 | Msa0658570 | 0.831732 | 1.412749e-55 | -8.615850e-47 |
| Msa0424990 | Msa0688070 | 0.806818 | 6.837953e-50 | -8.615850e-47 |
| Msa0424990 | Msa0691050 | 0.801817 | 7.527565e-49 | -8.615850e-47 |
| Msa0424990 | Msa0693380 | 0.823173 | 1.597592e-53 | -8.615850e-47 |
| Msa0424990 | Msa0703490 | 0.810780 | 9.723431e-51 | -8.615850e-47 |
| Msa0424990 | Msa0715110 | 0.821331 | 4.274357e-53 | -8.615850e-47 |
| Msa0424990 | Msa0715140 | 0.802990 | 4.316289e-49 | -8.615850e-47 |
| Msa0424990 | Msa0724560 | 0.833734 | 4.499258e-56 | -8.615850e-47 |
| Msa0424990 | Msa0757050 | 0.815803 | 7.665302e-52 | -8.615850e-47 |
| Msa0424990 | Msa0757080 | 0.810909 | 9.117611e-51 | -8.615850e-47 |
| Msa0424990 | Msa0798030 | 0.821691 | 3.528892e-53 | -8.615850e-47 |
| Msa0424990 | Msa0798070 | 0.805508 | 1.290389e-49 | -8.615850e-47 |
| Msa0424990 | Msa0803590 | 0.811398 | 7.142931e-51 | -8.615850e-47 |
| Msa0424990 | Msa0838930 | 0.808424 | 3.118998e-50 | -8.615850e-47 |
| Msa0424990 | Msa0847880 | 0.804430 | 2.168605e-49 | -8.615850e-47 |
| Msa0424990 | Msa0848900 | 0.836950 | 6.929946e-57 | -8.615850e-47 |
| Msa0424990 | Msa0870530 | 0.837734 | 4.363836e-57 | -8.615850e-47 |
| Msa0424990 | Msa0876850 | -0.807143 | 5.836797e-50 | -8.615850e-47 |
| Msa0424990 | Msa0891040 | 0.839749 | 1.315300e-57 | -8.615850e-47 |
| Msa0424990 | Msa0903700 | 0.824311 | 8.645116e-54 | -8.615850e-47 |
| Msa0424990 | Msa0908170 | 0.831625 | 1.501523e-55 | -8.615850e-47 |
| Msa0424990 | Msa0910980 | -0.803471 | 3.431209e-49 | -8.615850e-47 |
| Msa0424990 | Msa0924310 | 0.802500 | 5.447512e-49 | -8.615850e-47 |
| Msa0424990 | Msa0936210 | 0.801053 | 1.079535e-48 | -8.615850e-47 |
| Msa0424990 | Msa0973150 | 0.824445 | 8.041604e-54 | -8.615850e-47 |
| Msa0424990 | Msa0982240 | 0.854123 | 1.517870e-61 | -8.615850e-47 |
| Msa0424990 | Msa0990960 | 0.833646 | 4.732701e-56 | -8.615850e-47 |
| Msa0424990 | Msa1005410 | 0.813081 | 3.065448e-51 | -8.615850e-47 |
| Msa0424990 | Msa1006850 | 0.833298 | 5.778036e-56 | -8.615850e-47 |
| Msa0424990 | Msa1021510 | 0.806706 | 7.221251e-50 | -8.615850e-47 |
| Msa0424990 | Msa1031770 | 0.807774 | 4.288391e-50 | -8.615850e-47 |
| Msa0424990 | Msa1035300 | 0.802519 | 5.399487e-49 | -8.615850e-47 |
| Msa0424990 | Msa1041730 | 0.804253 | 2.360122e-49 | -8.615850e-47 |
| Msa0424990 | Msa1047720 | 0.804160 | 2.468254e-49 | -8.615850e-47 |
| Msa0424990 | Msa1068200 | -0.822501 | 2.290095e-53 | -8.615850e-47 |
| Msa0424990 | Msa1070840 | 0.806667 | 7.359683e-50 | -8.615850e-47 |
| Msa0424990 | Msa1075080 | -0.800432 | 1.445554e-48 | -8.615850e-47 |
| Msa0424990 | Msa1075220 | -0.822247 | 2.623879e-53 | -8.615850e-47 |
| Msa0424990 | Msa1080160 | 0.851717 | 7.399529e-61 | -8.615850e-47 |
| Msa0424990 | Msa1082500 | 0.803923 | 2.764248e-49 | -8.615850e-47 |
| Msa0424990 | Msa1084260 | 0.888471 | 5.734918e-73 | -8.615850e-47 |
| Msa0424990 | Msa1109820 | 0.801225 | 9.954263e-49 | -8.615850e-47 |
| Msa0424990 | Msa1116130 | -0.813602 | 2.356166e-51 | -8.615850e-47 |
| Msa0424990 | Msa1118760 | 0.818203 | 2.215494e-52 | -8.615850e-47 |
| Msa0424990 | Msa1125080 | 0.806527 | 7.877203e-50 | -8.615850e-47 |
| Msa0424990 | Msa1139000 | -0.813647 | 2.302644e-51 | -8.615850e-47 |
| Msa0424990 | Msa1158660 | 0.816471 | 5.436513e-52 | -8.615850e-47 |
| Msa0424990 | Msa1162550 | -0.823275 | 1.512381e-53 | -8.615850e-47 |
| Msa0424990 | Msa1170800 | 0.839727 | 1.332591e-57 | -8.615850e-47 |
| Msa0424990 | Msa1185980 | 0.802655 | 5.061123e-49 | -8.615850e-47 |
| Msa0424990 | Msa1199070 | 0.818225 | 2.190911e-52 | -8.615850e-47 |
| Msa0424990 | Msa1224480 | 0.804231 | 2.385917e-49 | -8.615850e-47 |
| Msa0424990 | Msa1258380 | -0.808478 | 3.036186e-50 | -8.615850e-47 |
| Msa0424990 | Msa1265070 | 0.803055 | 4.183204e-49 | -8.615850e-47 |
| Msa0424990 | Msa1276440 | 0.809696 | 1.665552e-50 | -8.615850e-47 |
| Msa0424990 | Msa1299070 | 0.811175 | 7.982491e-51 | -8.615850e-47 |
| Msa0424990 | Msa1307740 | 0.806820 | 6.831319e-50 | -8.615850e-47 |
| Msa0424990 | Msa1314340 | 0.814603 | 1.416757e-51 | -8.615850e-47 |
| Msa0424990 | Msa1366300 | 0.829014 | 6.524449e-55 | -8.615850e-47 |
| Msa0424990 | Msa1376890 | 0.832561 | 8.812278e-56 | -8.615850e-47 |
| Msa0424990 | Msa1379850 | 0.892717 | 1.227017e-74 | -8.615850e-47 |
| Msa0424990 | Msa1384350 | 0.820417 | 6.934105e-53 | -8.615850e-47 |
| Msa0424990 | Msa1392260 | 0.803360 | 3.617572e-49 | -8.615850e-47 |
| Msa0424990 | Msa1404540 | 0.834244 | 3.352951e-56 | -8.615850e-47 |
| Msa0424990 | Msa1431060 | 0.840483 | 8.462329e-58 | -8.615850e-47 |
| Msa0424990 | Msa1433220 | 0.831653 | 1.477855e-55 | -8.615850e-47 |
| Msa0424990 | Msa1435400 | 0.806620 | 7.528344e-50 | -8.615850e-47 |
| Msa0424990 | Msa1440600 | 0.803021 | 4.252748e-49 | -8.615850e-47 |
| Msa0424990 | Msa1440940 | 0.803076 | 4.143249e-49 | -8.615850e-47 |
| Msa0424990 | Msa1444250 | -0.808439 | 3.095004e-50 | -8.615850e-47 |
| Msa0424990 | Msa1447150 | 0.849442 | 3.225486e-60 | -8.615850e-47 |
| Msa0424990 | Msa1451620 | -0.815675 | 8.187083e-52 | -8.615850e-47 |
| Msa0243250 | Msa0424990 | 0.800138 | 1.658719e-48 | -8.615850e-47 |
| Msa0243710 | Msa0424990 | 0.821913 | 3.135596e-53 | -8.615850e-47 |
| Msa0245940 | Msa0424990 | 0.822316 | 2.528507e-53 | -8.615850e-47 |
| Msa0260810 | Msa0424990 | 0.834418 | 3.032569e-56 | -8.615850e-47 |
| Msa0266000 | Msa0424990 | -0.809930 | 1.483560e-50 | -8.615850e-47 |
| Msa0284520 | Msa0424990 | 0.802065 | 6.693705e-49 | -8.615850e-47 |
| Msa0296560 | Msa0424990 | 0.804878 | 1.748057e-49 | -8.615850e-47 |
| Msa0314060 | Msa0424990 | 0.802209 | 6.253567e-49 | -8.615850e-47 |
| Msa0335040 | Msa0424990 | 0.812528 | 4.051868e-51 | -8.615850e-47 |
| Msa0356890 | Msa0424990 | -0.806591 | 7.635106e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424990 | MtrunA17_Chr3g0126961 | 93.099 | 797 | 24 | 1 | 1 | 766 | 1 | 797 | 0.0 | 1503 |
| Msa0424990 | MtrunA17_Chr5g0409191 | 39.259 | 135 | 74 | 2 | 631 | 765 | 253 | 379 | 4.88e-17 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424990 | AT5G53020.3 | 42.973 | 740 | 346 | 15 | 59 | 766 | 17 | 712 | 3.28e-150 | 456 |
| Msa0424990 | AT5G53020.4 | 42.973 | 740 | 346 | 15 | 59 | 766 | 17 | 712 | 3.28e-150 | 456 |
| Msa0424990 | AT5G53020.5 | 42.973 | 740 | 346 | 15 | 59 | 766 | 17 | 712 | 3.28e-150 | 456 |
| Msa0424990 | AT5G53020.1 | 42.973 | 740 | 346 | 15 | 59 | 766 | 17 | 712 | 3.28e-150 | 456 |
| Msa0424990 | AT5G53020.8 | 42.973 | 740 | 346 | 15 | 59 | 766 | 17 | 712 | 3.28e-150 | 456 |
| Msa0424990 | AT5G53020.10 | 42.973 | 740 | 346 | 15 | 59 | 766 | 17 | 712 | 3.28e-150 | 456 |
| Msa0424990 | AT5G53020.9 | 42.973 | 740 | 346 | 15 | 59 | 766 | 17 | 712 | 3.28e-150 | 456 |
| Msa0424990 | AT5G53020.6 | 42.568 | 740 | 350 | 14 | 59 | 766 | 17 | 713 | 8.68e-150 | 455 |
| Msa0424990 | AT5G53020.7 | 42.568 | 740 | 350 | 14 | 59 | 766 | 17 | 713 | 8.68e-150 | 455 |
| Msa0424990 | AT5G53020.2 | 43.490 | 722 | 332 | 15 | 77 | 766 | 26 | 703 | 1.81e-149 | 454 |
| Msa0424990 | AT3G45900.1 | 35.498 | 231 | 118 | 7 | 534 | 760 | 170 | 373 | 3.92e-20 | 94.0 |
Find 120 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAATCAAAGATTGTTTC+TGG | 0.151138 | 3_2:+75350713 | Msa0424990:CDS |
| TAGCAATAATGGAACTTAAA+AGG | 0.208389 | 3_2:+75350914 | Msa0424990:exon |
| TCAAGGAAGTGCACAGCTTT+TGG | 0.210804 | 3_2:+75347927 | Msa0424990:CDS |
| CTAAACCTCTTTGAACTTCA+TGG | 0.216638 | 3_2:-75350817 | None:intergenic |
| TGAGTAATTTCTGAAGATTC+TGG | 0.219751 | 3_2:-75349661 | None:intergenic |
| TGTTGATGAACTTGAGTTCT+AGG | 0.220069 | 3_2:+75348748 | Msa0424990:CDS |
| AGAATGTATCCAATATATTT+TGG | 0.237612 | 3_2:+75347814 | Msa0424990:CDS |
| ATCTTCCACTGGAATTGTTT+TGG | 0.250960 | 3_2:-75349973 | None:intergenic |
| ATGAGAAGTTAGAGGCATTT+AGG | 0.253487 | 3_2:+75349431 | Msa0424990:CDS |
| TTGTTTCTAAAACAGTTTAA+AGG | 0.253595 | 3_2:-75349625 | None:intergenic |
| GTTCAAAAGGAAGTGATAAA+TGG | 0.266617 | 3_2:+75347967 | Msa0424990:CDS |
| GCATCAATTTCTATATGATT+TGG | 0.288405 | 3_2:-75349910 | None:intergenic |
| TGCGAAGTTTCACAAGGATT+TGG | 0.302648 | 3_2:+75348545 | Msa0424990:CDS |
| TAATAACATAAATTTGTATA+TGG | 0.314138 | 3_2:+75351017 | Msa0424990:three_prime_UTR |
| CTCAAGGTCACCTATAATTC+TGG | 0.315128 | 3_2:-75350852 | None:intergenic |
| TGAAGCAAATTGGTCTTTCA+TGG | 0.320358 | 3_2:-75349593 | None:intergenic |
| GAGACATGACAAGATGAAAT+TGG | 0.321303 | 3_2:+75349534 | Msa0424990:CDS |
| ATGCTAAACGTTTGGAAGAT+TGG | 0.326615 | 3_2:+75349317 | Msa0424990:CDS |
| GTTCGGACAGCCAGAATTAT+AGG | 0.330038 | 3_2:+75350842 | Msa0424990:CDS |
| TTCAAAAGGAAGTGATAAAT+GGG | 0.332640 | 3_2:+75347968 | Msa0424990:CDS |
| CGGTCGCGCTGTTAAGCATT+TGG | 0.334683 | 3_2:+75348440 | Msa0424990:CDS |
| CAAGAAACACCAAAATATAT+TGG | 0.335840 | 3_2:-75347823 | None:intergenic |
| ACTTTGCTGAATAAACAAAT+TGG | 0.339160 | 3_2:+75350150 | Msa0424990:CDS |
| GCTTGAGAAGGTAGCAATAA+TGG | 0.343965 | 3_2:+75350903 | Msa0424990:exon |
| TTCAAAGAGGTTTAGAAGTT+CGG | 0.354728 | 3_2:+75350825 | Msa0424990:CDS |
| TCCTGCTAATGCTAAACGTT+TGG | 0.356798 | 3_2:+75349309 | Msa0424990:CDS |
| TGCTAAACGTTTGGAAGATT+GGG | 0.358713 | 3_2:+75349318 | Msa0424990:CDS |
| CAAAGAGGAGTCTGATTTGA+TGG | 0.372221 | 3_2:+75348500 | Msa0424990:CDS |
| ACCAATTTGCTTCAAAATTG+AGG | 0.378661 | 3_2:+75349602 | Msa0424990:CDS |
| CTCAAGATCCTGTTTGGTCT+AGG | 0.386387 | 3_2:+75349680 | Msa0424990:CDS |
| ATTGAAGGAAATGGAAGGTT+TGG | 0.393098 | 3_2:+75348215 | Msa0424990:CDS |
| GAAATTGGAGAGCTTATTGT+TGG | 0.396045 | 3_2:+75349549 | Msa0424990:CDS |
| TTAAGTTATCAAAGGCTAGA+AGG | 0.396326 | 3_2:+75348649 | Msa0424990:CDS |
| ATTGTTGAAACTATGCTTCA+AGG | 0.396530 | 3_2:+75347910 | Msa0424990:CDS |
| GAGAAAGGAACTAGAAGAAA+AGG | 0.401700 | 3_2:+75348278 | Msa0424990:CDS |
| AAAGCAAATGAGAAAGTTGT+AGG | 0.405460 | 3_2:+75348060 | Msa0424990:CDS |
| GAGCTTATTGTTGGAGAGAG+AGG | 0.407957 | 3_2:+75349558 | Msa0424990:CDS |
| CAAAGATACATTGTTGCAAC+AGG | 0.409586 | 3_2:+75350674 | Msa0424990:CDS |
| TTTATTCAGCAAAGTAATCA+AGG | 0.419544 | 3_2:-75350142 | None:intergenic |
| AAGATTGTTTCTGGATTTGT+TGG | 0.423223 | 3_2:+75350722 | Msa0424990:CDS |
| AGCAATAATGGAACTTAAAA+GGG | 0.425201 | 3_2:+75350915 | Msa0424990:exon |
| AAATTACTCAAGATCCTGTT+TGG | 0.429333 | 3_2:+75349674 | Msa0424990:CDS |
| AAAGCAAATGTTGTTGAAAG+AGG | 0.431548 | 3_2:+75348626 | Msa0424990:CDS |
| TCCAAACGTTTAGCATTAGC+AGG | 0.434400 | 3_2:-75349310 | None:intergenic |
| GATGGTTCAGAAATTAACTT+TGG | 0.439228 | 3_2:+75348518 | Msa0424990:CDS |
| TCAGTCACACTTGGAGGGAT+TGG | 0.440819 | 3_2:+75349492 | Msa0424990:CDS |
| TGTTGGAGTGGCAGAAGAGA+TGG | 0.441207 | 3_2:+75350739 | Msa0424990:CDS |
| ATTCTTATTGAAAGGTTGAC+AGG | 0.441436 | 3_2:+75350051 | Msa0424990:CDS |
| AAGATGGATCTTCATGCTCT+TGG | 0.442214 | 3_2:+75349991 | Msa0424990:CDS |
| CAAAACTGCTTTCATTGAGC+TGG | 0.443907 | 3_2:+75348386 | Msa0424990:CDS |
| ATTGATGCTGCTGAAAAGAT+AGG | 0.447135 | 3_2:+75349925 | Msa0424990:CDS |
| GAATCAGAAATTGAAGGAAA+TGG | 0.447469 | 3_2:+75348206 | Msa0424990:CDS |
| AGATAAGAAGATTGAAGAAG+AGG | 0.454313 | 3_2:+75348248 | Msa0424990:CDS |
| AAGAGCATTCTTCTGATCTC+AGG | 0.461075 | 3_2:+75348358 | Msa0424990:CDS |
| TCAAGATCCTGTTTGGTCTA+GGG | 0.465810 | 3_2:+75349681 | Msa0424990:CDS |
| AGCAACTAATTCTTATTGAA+AGG | 0.465994 | 3_2:+75350043 | Msa0424990:CDS |
| GATCAAAGATGAGAAGTTAG+AGG | 0.475117 | 3_2:+75349423 | Msa0424990:CDS |
| ATTCTCCGCGATTTGCATAG+AGG | 0.490412 | 3_2:-75350583 | None:intergenic |
| GTGCTGGAATTGACATGAAA+CGG | 0.493296 | 3_2:+75350768 | Msa0424990:CDS |
| AAAACAATTCCAGTGGAAGA+TGG | 0.493803 | 3_2:+75349975 | Msa0424990:CDS |
| TGCTGCATGCCTCTTGCACT+AGG | 0.496644 | 3_2:-75348783 | None:intergenic |
| AGAGGAACTTATTTCTGTCA+TGG | 0.499376 | 3_2:+75348473 | Msa0424990:CDS |
| GATTGTGTGGAAAGTTCAAA+AGG | 0.499495 | 3_2:+75347954 | Msa0424990:CDS |
| CTGAGAATGAAACAGAAAAG+TGG | 0.502451 | 3_2:+75348679 | Msa0424990:CDS |
| GCAGCTTCAGTCACACTTGG+AGG | 0.505207 | 3_2:+75349486 | Msa0424990:CDS |
| TTGCTGCACAAGAACAAAGC+TGG | 0.505614 | 3_2:+75348088 | Msa0424990:CDS |
| GCATTTGGATGCTACAAAAG+AGG | 0.512415 | 3_2:+75348455 | Msa0424990:CDS |
| ACGTTTAGCATTAGCAGGAA+TGG | 0.513905 | 3_2:-75349305 | None:intergenic |
| GTCAAATTGATCATGACTCA+AGG | 0.513967 | 3_2:-75349791 | None:intergenic |
| AAAGCTGAAAAGTGCTGAGA+TGG | 0.516211 | 3_2:+75347999 | Msa0424990:CDS |
| GAAGGAAATGGAAGGTTTGG+TGG | 0.518213 | 3_2:+75348218 | Msa0424990:CDS |
| CTTTGATACTGCACGGGAGT+AGG | 0.523478 | 3_2:-75349886 | None:intergenic |
| GAAGAGATGGAGAAAAGTGC+TGG | 0.533742 | 3_2:+75350752 | Msa0424990:CDS |
| TGAATTGAATCAGAAATTGA+AGG | 0.534394 | 3_2:+75348200 | Msa0424990:CDS |
| ACCACTTCTCCTGAGTGTCT+TGG | 0.535537 | 3_2:-75351176 | None:intergenic |
| CTGTTCCATGAAGTTCAAAG+AGG | 0.544368 | 3_2:+75350812 | Msa0424990:CDS |
| GAAAGAGGTTAAGTTATCAA+AGG | 0.545103 | 3_2:+75348641 | Msa0424990:CDS |
| GGGTGAGAGCTGAGACAGAA+AGG | 0.549921 | 3_2:+75349338 | Msa0424990:CDS |
| AGGAAACTTCGACAACAGAT+TGG | 0.551051 | 3_2:+75348123 | Msa0424990:CDS |
| CAGAAATTGAAGGAAATGGA+AGG | 0.555214 | 3_2:+75348210 | Msa0424990:CDS |
| ACAAATAAACACTTGAGGAA+AGG | 0.561365 | 3_2:-75350952 | None:intergenic |
| ATTTGGACTTTGATACTGCA+CGG | 0.571110 | 3_2:-75349893 | None:intergenic |
| ATCTTGACCCTAGACCAAAC+AGG | 0.572243 | 3_2:-75349688 | None:intergenic |
| AAAGCTGGTTTAGCGAAAGA+AGG | 0.572971 | 3_2:+75348103 | Msa0424990:CDS |
| CATTCGTTTGCAAAGATCGT+CGG | 0.573921 | 3_2:-75350199 | None:intergenic |
| CAGCTTCAGTCACACTTGGA+GGG | 0.574526 | 3_2:+75349487 | Msa0424990:CDS |
| CATGAAGATCCATCTTCCAC+TGG | 0.574920 | 3_2:-75349984 | None:intergenic |
| AGACATCTTGAAGCTGAACT+CGG | 0.580639 | 3_2:+75348420 | Msa0424990:CDS |
| GGAAATGGAAGGTTTGGTGG+AGG | 0.586781 | 3_2:+75348221 | Msa0424990:CDS |
| TCCAAGACACTCAGGAGAAG+TGG | 0.588026 | 3_2:+75351175 | Msa0424990:three_prime_UTR |
| AGATAGCAAAGTTAGTATGA+AGG | 0.588120 | 3_2:+75350110 | Msa0424990:CDS |
| TCATGTTATCCAAGACACTC+AGG | 0.588785 | 3_2:+75351167 | Msa0424990:three_prime_UTR |
| TTCTGTCATGGAGAACAAAG+AGG | 0.590110 | 3_2:+75348485 | Msa0424990:CDS |
| AAGTGGAGAGAAGCTTCAGA+AGG | 0.592869 | 3_2:+75348696 | Msa0424990:CDS |
| AGAGAATCTGCTAAACGTGA+AGG | 0.597592 | 3_2:+75348333 | Msa0424990:CDS |
| AAGCAAATGAGAAAGTTGTA+GGG | 0.600001 | 3_2:+75348061 | Msa0424990:CDS |
| AGGTGACCTTGAGGGAACAT+TGG | 0.600537 | 3_2:+75350862 | Msa0424990:CDS |
| ATGATCCAAAACAATTCCAG+TGG | 0.601649 | 3_2:+75349968 | Msa0424990:CDS |
| GAGTATCTTACAAGATCAAG+AGG | 0.601910 | 3_2:+75350013 | Msa0424990:CDS |
| GAGGGAACATTGGCTCGTGA+AGG | 0.602293 | 3_2:+75350872 | Msa0424990:CDS |
| TCAAATTGATCATGACTCAA+GGG | 0.604310 | 3_2:-75349790 | None:intergenic |
| CAGAATTATAGGTGACCTTG+AGG | 0.607753 | 3_2:+75350853 | Msa0424990:CDS |
| ACACTTGGAGGGATTGGTGA+AGG | 0.608312 | 3_2:+75349498 | Msa0424990:CDS |
| TGTTTCTGGATTTGTTGGAG+TGG | 0.609479 | 3_2:+75350727 | Msa0424990:CDS |
| CACGAGCCAATGTTCCCTCA+AGG | 0.611253 | 3_2:-75350868 | None:intergenic |
| AAGGAATGATATGCTTGAGA+AGG | 0.611384 | 3_2:+75350891 | Msa0424990:CDS |
| CGACGATCTTTGCAAACGAA+TGG | 0.616168 | 3_2:+75350200 | Msa0424990:CDS |
| TTTGGACTTTGATACTGCAC+GGG | 0.621060 | 3_2:-75349892 | None:intergenic |
| GCTGCATGCCTCTTGCACTA+GGG | 0.621766 | 3_2:-75348782 | None:intergenic |
| GGAGATTGCGAAGTTTCACA+AGG | 0.622468 | 3_2:+75348539 | Msa0424990:CDS |
| GATGAACTTGAGTTCTAGGA+AGG | 0.625791 | 3_2:+75348752 | Msa0424990:CDS |
| AAAGCAGCTTCAGTCACACT+TGG | 0.628625 | 3_2:+75349483 | Msa0424990:CDS |
| TCAAAAGGAAGTGATAAATG+GGG | 0.629196 | 3_2:+75347969 | Msa0424990:CDS |
| AAGATTGTGAAGAGAAAACC+AGG | 0.629472 | 3_2:+75349706 | Msa0424990:CDS |
| AGAATTATAGGTGACCTTGA+GGG | 0.630636 | 3_2:+75350854 | Msa0424990:CDS |
| CAAAAGGAAGTGATAAATGG+GGG | 0.635891 | 3_2:+75347970 | Msa0424990:CDS |
| TATAGACAAATAAACACTTG+AGG | 0.646326 | 3_2:-75350957 | None:intergenic |
| AGAAGTTAGAGGCATTTAGG+TGG | 0.657198 | 3_2:+75349434 | Msa0424990:CDS |
| ATGCAACTCTGATTGAACAA+AGG | 0.686777 | 3_2:+75349362 | Msa0424990:CDS |
| AATGTCCTCTATGCAAATCG+CGG | 0.688926 | 3_2:+75350578 | Msa0424990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACATAAATTTGTATA+TGG | + | chr3_2:75351017-75351036 | Msa0424990:three_prime_UTR | 10.0% |
| !!! | TTTTTTTTTTTTTGTTTTCA+CGG | - | chr3_2:75351074-75351093 | None:intergenic | 10.0% |
| !!! | ATTTTTTAGAATATTGCAAA+TGG | - | chr3_2:75350386-75350405 | None:intergenic | 15.0% |
| !! | TCATTTATGATATTGAAAAA+TGG | + | chr3_2:75350447-75350466 | Msa0424990:intron | 15.0% |
| !!! | TTTTTTTTTTTTGTTTTCAC+GGG | - | chr3_2:75351073-75351092 | None:intergenic | 15.0% |
| !!! | AGAATGTATCCAATATATTT+TGG | + | chr3_2:75347814-75347833 | Msa0424990:CDS | 20.0% |
| !! | GTCTCAATTTATTTATTGTT+AGG | + | chr3_2:75348929-75348948 | Msa0424990:intron | 20.0% |
| !!! | TTATTTTATATAAGCTCTCA+AGG | - | chr3_2:75349096-75349115 | None:intergenic | 20.0% |
| !!! | TTGTTTCTAAAACAGTTTAA+AGG | - | chr3_2:75349628-75349647 | None:intergenic | 20.0% |
| !!! | AATTGTTTTGGATCATTAAA+AGG | - | chr3_2:75349964-75349983 | None:intergenic | 20.0% |
| !! | CATATATATATATAGTCGTA+AGG | + | chr3_2:75350271-75350290 | Msa0424990:intron | 20.0% |
| !! | AATTAAATCATATCTCATCA+TGG | - | chr3_2:75350330-75350349 | None:intergenic | 20.0% |
| !! | ATTGAATAATGCAAGAAAAA+AGG | + | chr3_2:75350604-75350623 | Msa0424990:CDS | 20.0% |
| ! | CAAGAAACACCAAAATATAT+TGG | - | chr3_2:75347826-75347845 | None:intergenic | 25.0% |
| ! | TTCAAAAGGAAGTGATAAAT+GGG | + | chr3_2:75347968-75347987 | Msa0424990:CDS | 25.0% |
| !!! | TAAGAGTGTTTGAGAAAAAA+AGG | + | chr3_2:75348163-75348182 | Msa0424990:CDS | 25.0% |
| !!! | AAGAGTGTTTGAGAAAAAAA+GGG | + | chr3_2:75348164-75348183 | Msa0424990:CDS | 25.0% |
| ! | TGAATTGAATCAGAAATTGA+AGG | + | chr3_2:75348200-75348219 | Msa0424990:CDS | 25.0% |
| !!! | GTTCATCAACATGTTTTTAA+AGG | - | chr3_2:75348739-75348758 | None:intergenic | 25.0% |
| !! | TTGTTCATTTGAAATATGTG+AGG | - | chr3_2:75348826-75348845 | None:intergenic | 25.0% |
| ! | ACATAAGTCTTCATTTCTTT+GGG | - | chr3_2:75348883-75348902 | None:intergenic | 25.0% |
| ! | TACATAAGTCTTCATTTCTT+TGG | - | chr3_2:75348884-75348903 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATGCAAACA+AGG | - | chr3_2:75348955-75348974 | None:intergenic | 25.0% |
| ! | TTGTACACTAAAGTTATGTT+TGG | - | chr3_2:75349219-75349238 | None:intergenic | 25.0% |
| ! | TGAAAAACAGTTAGAAATGA+TGG | + | chr3_2:75349729-75349748 | Msa0424990:CDS | 25.0% |
| !!! | TCTTCTTCAATCTTATTTTC+TGG | - | chr3_2:75349841-75349860 | None:intergenic | 25.0% |
| ! | AAGAAGAAAAACATGTTTGT+CGG | + | chr3_2:75349854-75349873 | Msa0424990:CDS | 25.0% |
| ! | GCATCAATTTCTATATGATT+TGG | - | chr3_2:75349913-75349932 | None:intergenic | 25.0% |
| ! | AGCAACTAATTCTTATTGAA+AGG | + | chr3_2:75350043-75350062 | Msa0424990:CDS | 25.0% |
| ! | TTTATTCAGCAAAGTAATCA+AGG | - | chr3_2:75350145-75350164 | None:intergenic | 25.0% |
| ! | ACTTTGCTGAATAAACAAAT+TGG | + | chr3_2:75350150-75350169 | Msa0424990:CDS | 25.0% |
| ! | ACATTAAAAAGAAGCCAAAA+AGG | - | chr3_2:75350427-75350446 | None:intergenic | 25.0% |
| ! | ATTCAATCAAAGATTGTTTC+TGG | + | chr3_2:75350713-75350732 | Msa0424990:CDS | 25.0% |
| !! | TAGCAATAATGGAACTTAAA+AGG | + | chr3_2:75350914-75350933 | Msa0424990:exon | 25.0% |
| !! | AGCAATAATGGAACTTAAAA+GGG | + | chr3_2:75350915-75350934 | Msa0424990:exon | 25.0% |
| ! | TATAGACAAATAAACACTTG+AGG | - | chr3_2:75350960-75350979 | None:intergenic | 25.0% |
| ! | TTTTTCTCAACTTCAACTTG+TGG | - | chr3_2:75347880-75347899 | None:intergenic | 30.0% |
| ATTGTTGAAACTATGCTTCA+AGG | + | chr3_2:75347910-75347929 | Msa0424990:CDS | 30.0% | |
| GTTCAAAAGGAAGTGATAAA+TGG | + | chr3_2:75347967-75347986 | Msa0424990:CDS | 30.0% | |
| TCAAAAGGAAGTGATAAATG+GGG | + | chr3_2:75347969-75347988 | Msa0424990:CDS | 30.0% | |
| AAAGCAAATGAGAAAGTTGT+AGG | + | chr3_2:75348060-75348079 | Msa0424990:CDS | 30.0% | |
| AAGCAAATGAGAAAGTTGTA+GGG | + | chr3_2:75348061-75348080 | Msa0424990:CDS | 30.0% | |
| GAATCAGAAATTGAAGGAAA+TGG | + | chr3_2:75348206-75348225 | Msa0424990:CDS | 30.0% | |
| AGATAAGAAGATTGAAGAAG+AGG | + | chr3_2:75348248-75348267 | Msa0424990:CDS | 30.0% | |
| GATGGTTCAGAAATTAACTT+TGG | + | chr3_2:75348518-75348537 | Msa0424990:CDS | 30.0% | |
| AAAGCAAATGTTGTTGAAAG+AGG | + | chr3_2:75348626-75348645 | Msa0424990:CDS | 30.0% | |
| GAAAGAGGTTAAGTTATCAA+AGG | + | chr3_2:75348641-75348660 | Msa0424990:CDS | 30.0% | |
| TTAAGTTATCAAAGGCTAGA+AGG | + | chr3_2:75348649-75348668 | Msa0424990:CDS | 30.0% | |
| CATAAGTCTTCATTTCTTTG+GGG | - | chr3_2:75348882-75348901 | None:intergenic | 30.0% | |
| AGACAGTTTGTGAAAACTTA+TGG | - | chr3_2:75349155-75349174 | None:intergenic | 30.0% | |
| ! | ACCAATTTGCTTCAAAATTG+AGG | + | chr3_2:75349602-75349621 | Msa0424990:CDS | 30.0% |
| ! | TGAGTAATTTCTGAAGATTC+TGG | - | chr3_2:75349664-75349683 | None:intergenic | 30.0% |
| AAATTACTCAAGATCCTGTT+TGG | + | chr3_2:75349674-75349693 | Msa0424990:CDS | 30.0% | |
| !! | ATTTCTAACTGTTTTTCACC+TGG | - | chr3_2:75349727-75349746 | None:intergenic | 30.0% |
| TCAAATTGATCATGACTCAA+GGG | - | chr3_2:75349793-75349812 | None:intergenic | 30.0% | |
| AGAAGAAAAACATGTTTGTC+GGG | + | chr3_2:75349855-75349874 | Msa0424990:CDS | 30.0% | |
| ATTCTTATTGAAAGGTTGAC+AGG | + | chr3_2:75350051-75350070 | Msa0424990:CDS | 30.0% | |
| AGATAGCAAAGTTAGTATGA+AGG | + | chr3_2:75350110-75350129 | Msa0424990:CDS | 30.0% | |
| !! | TATTTTTATGCCTTCTGCAT+TGG | + | chr3_2:75350240-75350259 | Msa0424990:intron | 30.0% |
| TTTGCAATACCAAATGAAGT+TGG | - | chr3_2:75350513-75350532 | None:intergenic | 30.0% | |
| !!! | AACACTAGAGCATTTTTTAG+AGG | + | chr3_2:75350637-75350656 | Msa0424990:CDS | 30.0% |
| !! | AAGATTGTTTCTGGATTTGT+TGG | + | chr3_2:75350722-75350741 | Msa0424990:CDS | 30.0% |
| TTCAAAGAGGTTTAGAAGTT+CGG | + | chr3_2:75350825-75350844 | Msa0424990:CDS | 30.0% | |
| ACAAATAAACACTTGAGGAA+AGG | - | chr3_2:75350955-75350974 | None:intergenic | 30.0% | |
| !! | CAACAATGTGAGATTTTGAT+TGG | + | chr3_2:75351137-75351156 | Msa0424990:three_prime_UTR | 30.0% |
| GATTGTGTGGAAAGTTCAAA+AGG | + | chr3_2:75347954-75347973 | Msa0424990:CDS | 35.0% | |
| CAAAAGGAAGTGATAAATGG+GGG | + | chr3_2:75347970-75347989 | Msa0424990:CDS | 35.0% | |
| CAGAAATTGAAGGAAATGGA+AGG | + | chr3_2:75348210-75348229 | Msa0424990:CDS | 35.0% | |
| ATTGAAGGAAATGGAAGGTT+TGG | + | chr3_2:75348215-75348234 | Msa0424990:CDS | 35.0% | |
| AGAAGAGGAGAAAAAGAGAA+AGG | + | chr3_2:75348263-75348282 | Msa0424990:CDS | 35.0% | |
| GAGAAAGGAACTAGAAGAAA+AGG | + | chr3_2:75348278-75348297 | Msa0424990:CDS | 35.0% | |
| !! | AGAGGAACTTATTTCTGTCA+TGG | + | chr3_2:75348473-75348492 | Msa0424990:CDS | 35.0% |
| CTGAGAATGAAACAGAAAAG+TGG | + | chr3_2:75348679-75348698 | Msa0424990:CDS | 35.0% | |
| ! | TGTTGATGAACTTGAGTTCT+AGG | + | chr3_2:75348748-75348767 | Msa0424990:CDS | 35.0% |
| AGACCAAATAGGAGACAAAA+GGG | - | chr3_2:75349281-75349300 | None:intergenic | 35.0% | |
| ATGCTAAACGTTTGGAAGAT+TGG | + | chr3_2:75349317-75349336 | Msa0424990:CDS | 35.0% | |
| TGCTAAACGTTTGGAAGATT+GGG | + | chr3_2:75349318-75349337 | Msa0424990:CDS | 35.0% | |
| ATGCAACTCTGATTGAACAA+AGG | + | chr3_2:75349362-75349381 | Msa0424990:CDS | 35.0% | |
| ! | ATGCTTTTGCAGAACAAATG+AGG | + | chr3_2:75349401-75349420 | Msa0424990:CDS | 35.0% |
| GATCAAAGATGAGAAGTTAG+AGG | + | chr3_2:75349423-75349442 | Msa0424990:CDS | 35.0% | |
| !! | ATGAGAAGTTAGAGGCATTT+AGG | + | chr3_2:75349431-75349450 | Msa0424990:CDS | 35.0% |
| GAGACATGACAAGATGAAAT+TGG | + | chr3_2:75349534-75349553 | Msa0424990:CDS | 35.0% | |
| GAAATTGGAGAGCTTATTGT+TGG | + | chr3_2:75349549-75349568 | Msa0424990:CDS | 35.0% | |
| !! | TGAAGCAAATTGGTCTTTCA+TGG | - | chr3_2:75349596-75349615 | None:intergenic | 35.0% |
| !!! | GCCTCAATTTTGAAGCAAAT+TGG | - | chr3_2:75349606-75349625 | None:intergenic | 35.0% |
| AAGATTGTGAAGAGAAAACC+AGG | + | chr3_2:75349706-75349725 | Msa0424990:CDS | 35.0% | |
| !! | CTCTTTTTCGCAAACTTCTT+CGG | - | chr3_2:75349764-75349783 | None:intergenic | 35.0% |
| GTCAAATTGATCATGACTCA+AGG | - | chr3_2:75349794-75349813 | None:intergenic | 35.0% | |
| ATTTGGACTTTGATACTGCA+CGG | - | chr3_2:75349896-75349915 | None:intergenic | 35.0% | |
| ATTGATGCTGCTGAAAAGAT+AGG | + | chr3_2:75349925-75349944 | Msa0424990:CDS | 35.0% | |
| ATGATCCAAAACAATTCCAG+TGG | + | chr3_2:75349968-75349987 | Msa0424990:CDS | 35.0% | |
| ! | ATCTTCCACTGGAATTGTTT+TGG | - | chr3_2:75349976-75349995 | None:intergenic | 35.0% |
| AAAACAATTCCAGTGGAAGA+TGG | + | chr3_2:75349975-75349994 | Msa0424990:CDS | 35.0% | |
| GAGTATCTTACAAGATCAAG+AGG | + | chr3_2:75350013-75350032 | Msa0424990:CDS | 35.0% | |
| TACTTGTGTCCAACTTCATT+TGG | + | chr3_2:75350501-75350520 | Msa0424990:intron | 35.0% | |
| CAAAGATACATTGTTGCAAC+AGG | + | chr3_2:75350674-75350693 | Msa0424990:CDS | 35.0% | |
| ! | AACGGTTTTCTGACAGTATA+AGG | + | chr3_2:75350786-75350805 | Msa0424990:CDS | 35.0% |
| CTAAACCTCTTTGAACTTCA+TGG | - | chr3_2:75350820-75350839 | None:intergenic | 35.0% | |
| AGAATTATAGGTGACCTTGA+GGG | + | chr3_2:75350854-75350873 | Msa0424990:CDS | 35.0% | |
| AAGGAATGATATGCTTGAGA+AGG | + | chr3_2:75350891-75350910 | Msa0424990:CDS | 35.0% | |
| !! | AAAGCTGAAAAGTGCTGAGA+TGG | + | chr3_2:75347999-75348018 | Msa0424990:CDS | 40.0% |
| ! | AAAGCTGGTTTAGCGAAAGA+AGG | + | chr3_2:75348103-75348122 | Msa0424990:CDS | 40.0% |
| AGGAAACTTCGACAACAGAT+TGG | + | chr3_2:75348123-75348142 | Msa0424990:CDS | 40.0% | |
| AGAGAATCTGCTAAACGTGA+AGG | + | chr3_2:75348333-75348352 | Msa0424990:CDS | 40.0% | |
| !! | AAGAGCATTCTTCTGATCTC+AGG | + | chr3_2:75348358-75348377 | Msa0424990:CDS | 40.0% |
| CAAAACTGCTTTCATTGAGC+TGG | + | chr3_2:75348386-75348405 | Msa0424990:CDS | 40.0% | |
| AGACATCTTGAAGCTGAACT+CGG | + | chr3_2:75348420-75348439 | Msa0424990:CDS | 40.0% | |
| GCATTTGGATGCTACAAAAG+AGG | + | chr3_2:75348455-75348474 | Msa0424990:CDS | 40.0% | |
| TTCTGTCATGGAGAACAAAG+AGG | + | chr3_2:75348485-75348504 | Msa0424990:CDS | 40.0% | |
| ! | CAAAGAGGAGTCTGATTTGA+TGG | + | chr3_2:75348500-75348519 | Msa0424990:CDS | 40.0% |
| TGCGAAGTTTCACAAGGATT+TGG | + | chr3_2:75348545-75348564 | Msa0424990:CDS | 40.0% | |
| !! | GATGAACTTGAGTTCTAGGA+AGG | + | chr3_2:75348752-75348771 | Msa0424990:CDS | 40.0% |
| ATGCAGCATAGTTCTTCAAC+AGG | + | chr3_2:75348798-75348817 | Msa0424990:intron | 40.0% | |
| GGCAAGTAGTGATCAGAAAT+GGG | - | chr3_2:75348861-75348880 | None:intergenic | 40.0% | |
| ! | TGACCCTTTTGTCTCCTATT+TGG | + | chr3_2:75349275-75349294 | Msa0424990:intron | 40.0% |
| GAGACCAAATAGGAGACAAA+AGG | - | chr3_2:75349282-75349301 | None:intergenic | 40.0% | |
| ACGTTTAGCATTAGCAGGAA+TGG | - | chr3_2:75349308-75349327 | None:intergenic | 40.0% | |
| TCCTGCTAATGCTAAACGTT+TGG | + | chr3_2:75349309-75349328 | Msa0424990:CDS | 40.0% | |
| TCCAAACGTTTAGCATTAGC+AGG | - | chr3_2:75349313-75349332 | None:intergenic | 40.0% | |
| !! | AGAAGTTAGAGGCATTTAGG+TGG | + | chr3_2:75349434-75349453 | Msa0424990:CDS | 40.0% |
| TCAAGATCCTGTTTGGTCTA+GGG | + | chr3_2:75349681-75349700 | Msa0424990:CDS | 40.0% | |
| CGAAGAAGTTTGCGAAAAAG+AGG | + | chr3_2:75349762-75349781 | Msa0424990:CDS | 40.0% | |
| AGAAAAACATGTTTGTCGGG+AGG | + | chr3_2:75349858-75349877 | Msa0424990:CDS | 40.0% | |
| TTTGGACTTTGATACTGCAC+GGG | - | chr3_2:75349895-75349914 | None:intergenic | 40.0% | |
| AAGATGGATCTTCATGCTCT+TGG | + | chr3_2:75349991-75350010 | Msa0424990:CDS | 40.0% | |
| ! | AAAGATCGTCGGTCTTTTCT+TGG | - | chr3_2:75350191-75350210 | None:intergenic | 40.0% |
| CATTCGTTTGCAAAGATCGT+CGG | - | chr3_2:75350202-75350221 | None:intergenic | 40.0% | |
| AATGTCCTCTATGCAAATCG+CGG | + | chr3_2:75350578-75350597 | Msa0424990:CDS | 40.0% | |
| !! | TGTTTCTGGATTTGTTGGAG+TGG | + | chr3_2:75350727-75350746 | Msa0424990:CDS | 40.0% |
| GTGCTGGAATTGACATGAAA+CGG | + | chr3_2:75350768-75350787 | Msa0424990:CDS | 40.0% | |
| CTGTTCCATGAAGTTCAAAG+AGG | + | chr3_2:75350812-75350831 | Msa0424990:CDS | 40.0% | |
| CTCAAGGTCACCTATAATTC+TGG | - | chr3_2:75350855-75350874 | None:intergenic | 40.0% | |
| CAGAATTATAGGTGACCTTG+AGG | + | chr3_2:75350853-75350872 | Msa0424990:CDS | 40.0% | |
| GCTTGAGAAGGTAGCAATAA+TGG | + | chr3_2:75350903-75350922 | Msa0424990:exon | 40.0% | |
| TCATGTTATCCAAGACACTC+AGG | + | chr3_2:75351167-75351186 | Msa0424990:three_prime_UTR | 40.0% | |
| !! | TCAAGGAAGTGCACAGCTTT+TGG | + | chr3_2:75347927-75347946 | Msa0424990:CDS | 45.0% |
| !! | CAAGGAAGTGCACAGCTTTT+GGG | + | chr3_2:75347928-75347947 | Msa0424990:CDS | 45.0% |
| !! | AAGGAAGTGCACAGCTTTTG+GGG | + | chr3_2:75347929-75347948 | Msa0424990:CDS | 45.0% |
| !!! | AGCTTTTGGGGTTGATTGTG+TGG | + | chr3_2:75347941-75347960 | Msa0424990:CDS | 45.0% |
| TTGCTGCACAAGAACAAAGC+TGG | + | chr3_2:75348088-75348107 | Msa0424990:CDS | 45.0% | |
| GAAGGAAATGGAAGGTTTGG+TGG | + | chr3_2:75348218-75348237 | Msa0424990:CDS | 45.0% | |
| GGAGATTGCGAAGTTTCACA+AGG | + | chr3_2:75348539-75348558 | Msa0424990:CDS | 45.0% | |
| AAGTGGAGAGAAGCTTCAGA+AGG | + | chr3_2:75348696-75348715 | Msa0424990:CDS | 45.0% | |
| ! | GATGTTTTCCCTAGTGCAAG+AGG | + | chr3_2:75348774-75348793 | Msa0424990:CDS | 45.0% |
| GGGCAAGTAGTGATCAGAAA+TGG | - | chr3_2:75348862-75348881 | None:intergenic | 45.0% | |
| GGAATGGCTAGAGACCAAAT+AGG | - | chr3_2:75349292-75349311 | None:intergenic | 45.0% | |
| AAAGCAGCTTCAGTCACACT+TGG | + | chr3_2:75349483-75349502 | Msa0424990:CDS | 45.0% | |
| GAGCTTATTGTTGGAGAGAG+AGG | + | chr3_2:75349558-75349577 | Msa0424990:CDS | 45.0% | |
| CTCAAGATCCTGTTTGGTCT+AGG | + | chr3_2:75349680-75349699 | Msa0424990:CDS | 45.0% | |
| ATCTTGACCCTAGACCAAAC+AGG | - | chr3_2:75349691-75349710 | None:intergenic | 45.0% | |
| CATGAAGATCCATCTTCCAC+TGG | - | chr3_2:75349987-75350006 | None:intergenic | 45.0% | |
| ! | ATCGTCGGTCTTTTCTTGGA+GGG | - | chr3_2:75350187-75350206 | None:intergenic | 45.0% |
| CGACGATCTTTGCAAACGAA+TGG | + | chr3_2:75350200-75350219 | Msa0424990:CDS | 45.0% | |
| TGATTAGACGCCAATGCAGA+AGG | - | chr3_2:75350253-75350272 | None:intergenic | 45.0% | |
| ! | TGAGTCGTGTGAGTCCTTTT+TGG | + | chr3_2:75350410-75350429 | Msa0424990:intron | 45.0% |
| ATTCTCCGCGATTTGCATAG+AGG | - | chr3_2:75350586-75350605 | None:intergenic | 45.0% | |
| ! | GAAGAGATGGAGAAAAGTGC+TGG | + | chr3_2:75350752-75350771 | Msa0424990:CDS | 45.0% |
| GTTCGGACAGCCAGAATTAT+AGG | + | chr3_2:75350842-75350861 | Msa0424990:CDS | 45.0% | |
| !! | ACAAAAATATAAATTAAAAT+TGG | + | chr3_2:75349035-75349054 | Msa0424990:intron | 5.0% |
| GGAAGTGATAAATGGGGGAG+AGG | + | chr3_2:75347975-75347994 | Msa0424990:CDS | 50.0% | |
| !! | GGAAATGGAAGGTTTGGTGG+AGG | + | chr3_2:75348221-75348240 | Msa0424990:CDS | 50.0% |
| CAGCTTCAGTCACACTTGGA+GGG | + | chr3_2:75349487-75349506 | Msa0424990:CDS | 50.0% | |
| TCAGTCACACTTGGAGGGAT+TGG | + | chr3_2:75349492-75349511 | Msa0424990:CDS | 50.0% | |
| ! | ACACTTGGAGGGATTGGTGA+AGG | + | chr3_2:75349498-75349517 | Msa0424990:CDS | 50.0% |
| CTTTGATACTGCACGGGAGT+AGG | - | chr3_2:75349889-75349908 | None:intergenic | 50.0% | |
| ! | GATCGTCGGTCTTTTCTTGG+AGG | - | chr3_2:75350188-75350207 | None:intergenic | 50.0% |
| TGTTGGAGTGGCAGAAGAGA+TGG | + | chr3_2:75350739-75350758 | Msa0424990:CDS | 50.0% | |
| AGGTGACCTTGAGGGAACAT+TGG | + | chr3_2:75350862-75350881 | Msa0424990:CDS | 50.0% | |
| CGGTCGCGCTGTTAAGCATT+TGG | + | chr3_2:75348440-75348459 | Msa0424990:CDS | 55.0% | |
| GCTGCATGCCTCTTGCACTA+GGG | - | chr3_2:75348785-75348804 | None:intergenic | 55.0% | |
| TGCTGCATGCCTCTTGCACT+AGG | - | chr3_2:75348786-75348805 | None:intergenic | 55.0% | |
| GGGTGAGAGCTGAGACAGAA+AGG | + | chr3_2:75349338-75349357 | Msa0424990:CDS | 55.0% | |
| GCAGCTTCAGTCACACTTGG+AGG | + | chr3_2:75349486-75349505 | Msa0424990:CDS | 55.0% | |
| CACGAGCCAATGTTCCCTCA+AGG | - | chr3_2:75350871-75350890 | None:intergenic | 55.0% | |
| !! | GAGGGAACATTGGCTCGTGA+AGG | + | chr3_2:75350872-75350891 | Msa0424990:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 75347769 | 75351196 | 75347769 | ID=Msa0424990;Name=Msa0424990 |
| chr3_2 | mRNA | 75347769 | 75351196 | 75347769 | ID=Msa0424990-mRNA-1;Parent=Msa0424990;Name=Msa0424990-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.5|0.66|1|1|1|3|280|766 |
| chr3_2 | exon | 75347769 | 75348807 | 75347769 | ID=Msa0424990-mRNA-1:exon:19261;Parent=Msa0424990-mRNA-1 |
| chr3_2 | exon | 75349305 | 75350221 | 75349305 | ID=Msa0424990-mRNA-1:exon:19262;Parent=Msa0424990-mRNA-1 |
| chr3_2 | exon | 75350572 | 75351196 | 75350572 | ID=Msa0424990-mRNA-1:exon:19263;Parent=Msa0424990-mRNA-1 |
| chr3_2 | CDS | 75347769 | 75348807 | 75347769 | ID=Msa0424990-mRNA-1:cds;Parent=Msa0424990-mRNA-1 |
| chr3_2 | CDS | 75349305 | 75350221 | 75349305 | ID=Msa0424990-mRNA-1:cds;Parent=Msa0424990-mRNA-1 |
| chr3_2 | CDS | 75350572 | 75350916 | 75350572 | ID=Msa0424990-mRNA-1:cds;Parent=Msa0424990-mRNA-1 |
| chr3_2 | three_prime_UTR | 75350917 | 75351196 | 75350917 | ID=Msa0424990-mRNA-1:three_prime_utr;Parent=Msa0424990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
