AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1244430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244430 MtrunA17_Chr8g0360611 96.875 128 4 0 1 128 1 128 2.22e-91 270
Msa1244430 MtrunA17_Chr7g0276581 56.364 55 23 1 75 128 91 145 4.88e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244430 AT1G53250.1 70.213 47 14 0 82 128 101 147 4.18e-16 73.6
Msa1244430 AT1G53800.2 60.417 48 19 0 81 128 107 154 5.80e-14 67.8
Msa1244430 AT1G53800.3 60.417 48 19 0 81 128 107 154 5.80e-14 67.8
Msa1244430 AT1G53800.1 60.417 48 19 0 81 128 103 150 6.32e-14 67.8

Find 67 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCTCTTTATAAGATATT+AGG 0.265339 8_2:+32722663 Msa1244430:three_prime_UTR
AGGAAAAGTACCTTGGAATA+AGG 0.265892 8_2:+32721816 Msa1244430:CDS
TGTGAAATATTAATAAATTA+TGG 0.312453 8_2:-32722570 None:intergenic
CTCTTACTTGACTTCACCTT+GGG 0.334743 8_2:-32721982 None:intergenic
CACGCCCAGGATTGAACATT+TGG 0.345438 8_2:+32722707 Msa1244430:three_prime_UTR
CCGTTGGGTCACCAACTATC+AGG 0.348092 8_2:-32722760 None:intergenic
TTCCCAACAATTATTATTCA+AGG 0.353791 8_2:+32721593 Msa1244430:CDS
AATGTTGATTTAGGGATTGT+TGG 0.376629 8_2:-32721664 None:intergenic
CTGAACATCCCCGTTGTCAT+AGG 0.379002 8_2:+32722379 Msa1244430:exon
TTGTGTTTACCTATGACAAC+GGG 0.385549 8_2:-32722388 None:intergenic
GGAAAAGTACCTTGGAATAA+GGG 0.402627 8_2:+32721817 Msa1244430:CDS
TTGTTCAACATTGTGGTGTT+CGG 0.419568 8_2:-32721704 None:intergenic
AATTAGGATGAGAACATTAG+AGG 0.421479 8_2:+32721948 Msa1244430:CDS
CGCTCCAAATGTTCAATCCT+GGG 0.421812 8_2:-32722711 None:intergenic
ACAAATTATGAAAATTATCA+AGG 0.435312 8_2:+32722502 Msa1244430:three_prime_UTR
ACGCTCCAAATGTTCAATCC+TGG 0.436529 8_2:-32722712 None:intergenic
TGCCTTGAATAATAATTGTT+GGG 0.454127 8_2:-32721595 None:intergenic
AACTCAGACACCAGCGGCTC+CGG 0.457369 8_2:-32720943 None:intergenic
TGATTTAGGGATTGTTGGAG+GGG 0.458850 8_2:-32721659 None:intergenic
GTTGGTGACCCAACGGGTCC+TGG 0.458853 8_2:+32722767 Msa1244430:three_prime_UTR
GAGAACATTAGAGGCTTTGA+AGG 0.459307 8_2:+32721957 Msa1244430:CDS
GTTGGTTGGAAAGAGCAGTT+AGG 0.475690 8_2:-32720994 None:intergenic
ATATGATTTCATGCCTATCC+AGG 0.476816 8_2:-32722785 None:intergenic
ATGCCTATCCAGGACCCGTT+GGG 0.478281 8_2:-32722775 None:intergenic
CTGATAGTTGGTGACCCAAC+GGG 0.488235 8_2:+32722761 Msa1244430:three_prime_UTR
TGTTTCCTTCCCTTATTCCA+AGG 0.489715 8_2:-32721826 None:intergenic
TTGATTTAGGGATTGTTGGA+GGG 0.493657 8_2:-32721660 None:intergenic
AGAATGAGGAGAATGAGAAT+AGG 0.494493 8_2:+32721781 Msa1244430:CDS
TTGCCTTGAATAATAATTGT+TGG 0.504529 8_2:-32721596 None:intergenic
AGACCACATATAGATAGAAC+CGG 0.512278 8_2:+32720924 Msa1244430:five_prime_UTR
GAGCAGTTAGGAAGGTGAAA+AGG 0.514326 8_2:-32720982 None:intergenic
GAAAAGGAACATGAATGAGT+TGG 0.515172 8_2:-32720966 None:intergenic
GTTGATTTAGGGATTGTTGG+AGG 0.515416 8_2:-32721661 None:intergenic
CATGCCTATCCAGGACCCGT+TGG 0.519008 8_2:-32722776 None:intergenic
GATAGATATGTTATTAACAA+AGG 0.524111 8_2:-32722643 None:intergenic
TTCTCATCCTAATTCGCTCA+CGG 0.524851 8_2:-32721939 None:intergenic
AAGAATCTTGTTCAACATTG+TGG 0.527596 8_2:-32721711 None:intergenic
TGACCCAACGGGTCCTGGAT+AGG 0.528888 8_2:+32722772 Msa1244430:three_prime_UTR
GTTGGAAAGAGCAGTTAGGA+AGG 0.529033 8_2:-32720990 None:intergenic
ATAGATAGAACCGGAGCCGC+TGG 0.545877 8_2:+32720933 Msa1244430:five_prime_UTR
CAAACAAAGGAAAAGTACCT+TGG 0.546625 8_2:+32721809 Msa1244430:CDS
ACTCTTACTTGACTTCACCT+TGG 0.548598 8_2:-32721983 None:intergenic
CTTGTGTTTACCTATGACAA+CGG 0.564622 8_2:-32722389 None:intergenic
TTGTTGGGAATATGATTCAA+AGG 0.569799 8_2:-32721580 None:intergenic
GCTCCGGTTCTATCTATATG+TGG 0.575283 8_2:-32720927 None:intergenic
ATGTTCAATCCTGGGCGTGA+GGG 0.579105 8_2:-32722703 None:intergenic
TCAATCCTGGGCGTGAGGGT+AGG 0.580018 8_2:-32722699 None:intergenic
TCTCATCCTAATTCGCTCAC+GGG 0.585592 8_2:-32721938 None:intergenic
AATGTTCAATCCTGGGCGTG+AGG 0.587946 8_2:-32722704 None:intergenic
CTCTTGATAAAGAGAGAATG+AGG 0.588623 8_2:+32721767 Msa1244430:CDS
TTATCAAGGATTAATTGAGA+AGG 0.594475 8_2:+32722516 Msa1244430:three_prime_UTR
AAGTACCTTGGAATAAGGGA+AGG 0.596523 8_2:+32721821 Msa1244430:CDS
TTGGGCCTACCCTCACGCCC+AGG 0.600522 8_2:+32722694 Msa1244430:three_prime_UTR
TTGAAGTAGAGCATGTTGGT+TGG 0.602629 8_2:-32721008 None:intergenic
ATATGATTCAAAGGAGTGTG+TGG 0.612561 8_2:-32721571 None:intergenic
TAAGCTTACAATCTGTCTTG+AGG 0.616079 8_2:-32722442 None:intergenic
GAAAATGTTGTCAGTGTGAG+AGG 0.617334 8_2:+32721538 Msa1244430:intron
CCTGATAGTTGGTGACCCAA+CGG 0.624145 8_2:+32722760 Msa1244430:three_prime_UTR
AGAGGCTTTGAAGGACCCCA+AGG 0.638810 8_2:+32721966 Msa1244430:CDS
TCTTACTTGACTTCACCTTG+GGG 0.641871 8_2:-32721981 None:intergenic
AAGGGAAGGAAACACACTGC+AGG 0.642716 8_2:+32721835 Msa1244430:CDS
AGAATAGGACTAGCAAACAA+AGG 0.645416 8_2:+32721796 Msa1244430:CDS
TGAGTTGAAGTAGAGCATGT+TGG 0.645834 8_2:-32721012 None:intergenic
CATTTGGAGCGTGACAAGAG+TGG 0.648444 8_2:+32722723 Msa1244430:three_prime_UTR
GCTTACAATCTGTCTTGAGG+AGG 0.664898 8_2:-32722439 None:intergenic
AGTTGGAACTCAGACACCAG+CGG 0.729851 8_2:-32720949 None:intergenic
TGTGTTTACCTATGACAACG+GGG 0.785259 8_2:-32722387 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTTCTTTTACT+TGG + chr8_2:32722268-32722287 Msa1244430:intron 10.0%
!! TGTGAAATATTAATAAATTA+TGG - chr8_2:32722573-32722592 None:intergenic 10.0%
!!! AATTTTTTTTTTCTTTTACT+TGG + chr8_2:32722268-32722287 Msa1244430:intron 10.0%
!! TGTGAAATATTAATAAATTA+TGG - chr8_2:32722573-32722592 None:intergenic 10.0%
!!! AATTATGTCATTTTCTTTAA+GGG + chr8_2:32721172-32721191 Msa1244430:intron 15.0%
!! ACAAATTATGAAAATTATCA+AGG + chr8_2:32722502-32722521 Msa1244430:three_prime_UTR 15.0%
!!! AAGATATTAGGTTTTTATAT+TGG + chr8_2:32722675-32722694 Msa1244430:three_prime_UTR 15.0%
!!! AGATATTAGGTTTTTATATT+GGG + chr8_2:32722676-32722695 Msa1244430:three_prime_UTR 15.0%
!!! AATTATGTCATTTTCTTTAA+GGG + chr8_2:32721172-32721191 Msa1244430:intron 15.0%
!! ACAAATTATGAAAATTATCA+AGG + chr8_2:32722502-32722521 Msa1244430:three_prime_UTR 15.0%
!!! AAGATATTAGGTTTTTATAT+TGG + chr8_2:32722675-32722694 Msa1244430:three_prime_UTR 15.0%
!!! AGATATTAGGTTTTTATATT+GGG + chr8_2:32722676-32722695 Msa1244430:three_prime_UTR 15.0%
!!! GAATTATGTCATTTTCTTTA+AGG + chr8_2:32721171-32721190 Msa1244430:intron 20.0%
!! AACAACAATAAAGTTTAAAG+AGG - chr8_2:32721452-32721471 None:intergenic 20.0%
!!! AAAAAGACAATGTTGATTTA+GGG - chr8_2:32721675-32721694 None:intergenic 20.0%
!!! AAAATCAAGGTTTTAAATAG+TGG - chr8_2:32722179-32722198 None:intergenic 20.0%
!!! CTATTTAAAACCTTGATTTT+AGG + chr8_2:32722179-32722198 Msa1244430:intron 20.0%
!!! TGAAAATTTTTTAGTTGAAG+GGG - chr8_2:32722342-32722361 None:intergenic 20.0%
!!! CTGAAAATTTTTTAGTTGAA+GGG - chr8_2:32722343-32722362 None:intergenic 20.0%
!! ATTGAGAAGGAAAAATTATT+TGG + chr8_2:32722529-32722548 Msa1244430:three_prime_UTR 20.0%
!!! TTTTTTGGTTACATTAACAA+AGG - chr8_2:32722618-32722637 None:intergenic 20.0%
!!! TTAACAAAGGATATGTTTTT+TGG - chr8_2:32722633-32722652 None:intergenic 20.0%
!! GATAGATATGTTATTAACAA+AGG - chr8_2:32722646-32722665 None:intergenic 20.0%
!! ATCTCTCTTTATAAGATATT+AGG + chr8_2:32722663-32722682 Msa1244430:three_prime_UTR 20.0%
!!! GAATTATGTCATTTTCTTTA+AGG + chr8_2:32721171-32721190 Msa1244430:intron 20.0%
!! AACAACAATAAAGTTTAAAG+AGG - chr8_2:32721452-32721471 None:intergenic 20.0%
!!! AAAAAGACAATGTTGATTTA+GGG - chr8_2:32721675-32721694 None:intergenic 20.0%
!!! AAAATCAAGGTTTTAAATAG+TGG - chr8_2:32722179-32722198 None:intergenic 20.0%
!!! CTATTTAAAACCTTGATTTT+AGG + chr8_2:32722179-32722198 Msa1244430:intron 20.0%
!!! TGAAAATTTTTTAGTTGAAG+GGG - chr8_2:32722342-32722361 None:intergenic 20.0%
!!! CTGAAAATTTTTTAGTTGAA+GGG - chr8_2:32722343-32722362 None:intergenic 20.0%
!! ATTGAGAAGGAAAAATTATT+TGG + chr8_2:32722529-32722548 Msa1244430:three_prime_UTR 20.0%
!!! TTTTTTGGTTACATTAACAA+AGG - chr8_2:32722618-32722637 None:intergenic 20.0%
!!! TTAACAAAGGATATGTTTTT+TGG - chr8_2:32722633-32722652 None:intergenic 20.0%
!! GATAGATATGTTATTAACAA+AGG - chr8_2:32722646-32722665 None:intergenic 20.0%
!! ATCTCTCTTTATAAGATATT+AGG + chr8_2:32722663-32722682 Msa1244430:three_prime_UTR 20.0%
! TTATTTACTTTACTGTTGCA+CGG + chr8_2:32721083-32721102 Msa1244430:intron 25.0%
! ATTGCAAAATAATCCTTGAA+TGG + chr8_2:32721259-32721278 Msa1244430:intron 25.0%
! TTCCCAACAATTATTATTCA+AGG + chr8_2:32721593-32721612 Msa1244430:CDS 25.0%
! TGCCTTGAATAATAATTGTT+GGG - chr8_2:32721598-32721617 None:intergenic 25.0%
! TTGCCTTGAATAATAATTGT+TGG - chr8_2:32721599-32721618 None:intergenic 25.0%
!!! GAAAAAGACAATGTTGATTT+AGG - chr8_2:32721676-32721695 None:intergenic 25.0%
!!! CGAGTTTATTTTACCATTTT+TGG + chr8_2:32721869-32721888 Msa1244430:intron 25.0%
! ACAACAAAATGATCCAAAAA+TGG - chr8_2:32721885-32721904 None:intergenic 25.0%
! TGATGTGAACACAAAAATAA+AGG - chr8_2:32722030-32722049 None:intergenic 25.0%
! CCTAAATCATTTCAACAATA+AGG - chr8_2:32722065-32722084 None:intergenic 25.0%
! CCTTATTGTTGAAATGATTT+AGG + chr8_2:32722062-32722081 Msa1244430:intron 25.0%
!!! CCTGAAAATTTTTTAGTTGA+AGG - chr8_2:32722344-32722363 None:intergenic 25.0%
!! CCTTCAACTAAAAAATTTTC+AGG + chr8_2:32722341-32722360 Msa1244430:intron 25.0%
!! AACATAAACATGATTTTGCA+GGG - chr8_2:32722470-32722489 None:intergenic 25.0%
!! TAACATAAACATGATTTTGC+AGG - chr8_2:32722471-32722490 None:intergenic 25.0%
! TTATCAAGGATTAATTGAGA+AGG + chr8_2:32722516-32722535 Msa1244430:three_prime_UTR 25.0%
! TTATTTACTTTACTGTTGCA+CGG + chr8_2:32721083-32721102 Msa1244430:intron 25.0%
! ATTGCAAAATAATCCTTGAA+TGG + chr8_2:32721259-32721278 Msa1244430:intron 25.0%
! TTCCCAACAATTATTATTCA+AGG + chr8_2:32721593-32721612 Msa1244430:CDS 25.0%
! TGCCTTGAATAATAATTGTT+GGG - chr8_2:32721598-32721617 None:intergenic 25.0%
! TTGCCTTGAATAATAATTGT+TGG - chr8_2:32721599-32721618 None:intergenic 25.0%
!!! GAAAAAGACAATGTTGATTT+AGG - chr8_2:32721676-32721695 None:intergenic 25.0%
!!! CGAGTTTATTTTACCATTTT+TGG + chr8_2:32721869-32721888 Msa1244430:intron 25.0%
! ACAACAAAATGATCCAAAAA+TGG - chr8_2:32721885-32721904 None:intergenic 25.0%
! TGATGTGAACACAAAAATAA+AGG - chr8_2:32722030-32722049 None:intergenic 25.0%
! CCTAAATCATTTCAACAATA+AGG - chr8_2:32722065-32722084 None:intergenic 25.0%
! CCTTATTGTTGAAATGATTT+AGG + chr8_2:32722062-32722081 Msa1244430:intron 25.0%
!!! CCTGAAAATTTTTTAGTTGA+AGG - chr8_2:32722344-32722363 None:intergenic 25.0%
!! CCTTCAACTAAAAAATTTTC+AGG + chr8_2:32722341-32722360 Msa1244430:intron 25.0%
!! AACATAAACATGATTTTGCA+GGG - chr8_2:32722470-32722489 None:intergenic 25.0%
!! TAACATAAACATGATTTTGC+AGG - chr8_2:32722471-32722490 None:intergenic 25.0%
! TTATCAAGGATTAATTGAGA+AGG + chr8_2:32722516-32722535 Msa1244430:three_prime_UTR 25.0%
ACACAATAAATACAGTGTGA+GGG - chr8_2:32721054-32721073 None:intergenic 30.0%
AACACAATAAATACAGTGTG+AGG - chr8_2:32721055-32721074 None:intergenic 30.0%
TTGCAATTTATCTGCATTCA+AGG - chr8_2:32721246-32721265 None:intergenic 30.0%
TTGTTGGGAATATGATTCAA+AGG - chr8_2:32721583-32721602 None:intergenic 30.0%
!! AATGTTGATTTAGGGATTGT+TGG - chr8_2:32721667-32721686 None:intergenic 30.0%
AAGAATCTTGTTCAACATTG+TGG - chr8_2:32721714-32721733 None:intergenic 30.0%
AATTAGGATGAGAACATTAG+AGG + chr8_2:32721948-32721967 Msa1244430:CDS 30.0%
! GTAAGAGTCTTTGTTTAGAT+TGG + chr8_2:32721998-32722017 Msa1244430:intron 30.0%
ATTGTTGAAATGATTTAGGC+AGG + chr8_2:32722066-32722085 Msa1244430:intron 30.0%
TTGTTGAAATGATTTAGGCA+GGG + chr8_2:32722067-32722086 Msa1244430:intron 30.0%
!!! GAGATACTATTTTGGTTATG+TGG + chr8_2:32722207-32722226 Msa1244430:intron 30.0%
AATTAGCATCTGACTAATGA+GGG - chr8_2:32722240-32722259 None:intergenic 30.0%
ACACAATAAATACAGTGTGA+GGG - chr8_2:32721054-32721073 None:intergenic 30.0%
AACACAATAAATACAGTGTG+AGG - chr8_2:32721055-32721074 None:intergenic 30.0%
TTGCAATTTATCTGCATTCA+AGG - chr8_2:32721246-32721265 None:intergenic 30.0%
TTGTTGGGAATATGATTCAA+AGG - chr8_2:32721583-32721602 None:intergenic 30.0%
!! AATGTTGATTTAGGGATTGT+TGG - chr8_2:32721667-32721686 None:intergenic 30.0%
AAGAATCTTGTTCAACATTG+TGG - chr8_2:32721714-32721733 None:intergenic 30.0%
AATTAGGATGAGAACATTAG+AGG + chr8_2:32721948-32721967 Msa1244430:CDS 30.0%
! GTAAGAGTCTTTGTTTAGAT+TGG + chr8_2:32721998-32722017 Msa1244430:intron 30.0%
ATTGTTGAAATGATTTAGGC+AGG + chr8_2:32722066-32722085 Msa1244430:intron 30.0%
TTGTTGAAATGATTTAGGCA+GGG + chr8_2:32722067-32722086 Msa1244430:intron 30.0%
!!! GAGATACTATTTTGGTTATG+TGG + chr8_2:32722207-32722226 Msa1244430:intron 30.0%
AATTAGCATCTGACTAATGA+GGG - chr8_2:32722240-32722259 None:intergenic 30.0%
AGACCACATATAGATAGAAC+CGG + chr8_2:32720924-32720943 Msa1244430:five_prime_UTR 35.0%
GAAAAGGAACATGAATGAGT+TGG - chr8_2:32720969-32720988 None:intergenic 35.0%
TCAATATAATCACAAGTGCC+AGG - chr8_2:32721153-32721172 None:intergenic 35.0%
GCAAAATAATCCTTGAATGG+AGG + chr8_2:32721262-32721281 Msa1244430:intron 35.0%
ACTAACATAGTCTGCATTCA+AGG - chr8_2:32721310-32721329 None:intergenic 35.0%
ACTAACAGAGTGTACATTCA+GGG - chr8_2:32721342-32721361 None:intergenic 35.0%
ACCAACAAGGTCTATATTCA+GGG + chr8_2:32721382-32721401 Msa1244430:intron 35.0%
TTTGCAATTTCTCTGCATTG+AGG + chr8_2:32721410-32721429 Msa1244430:intron 35.0%
TTGCAATTTCTCTGCATTGA+GGG + chr8_2:32721411-32721430 Msa1244430:intron 35.0%
! ATATGATTCAAAGGAGTGTG+TGG - chr8_2:32721574-32721593 None:intergenic 35.0%
! ACAACTTTTGAGCAATAGGT+TGG + chr8_2:32721618-32721637 Msa1244430:CDS 35.0%
TTGATTTAGGGATTGTTGGA+GGG - chr8_2:32721663-32721682 None:intergenic 35.0%
TTGTTCAACATTGTGGTGTT+CGG - chr8_2:32721707-32721726 None:intergenic 35.0%
CTCTTGATAAAGAGAGAATG+AGG + chr8_2:32721767-32721786 Msa1244430:CDS 35.0%
AGAATGAGGAGAATGAGAAT+AGG + chr8_2:32721781-32721800 Msa1244430:CDS 35.0%
! AGAATAGGACTAGCAAACAA+AGG + chr8_2:32721796-32721815 Msa1244430:CDS 35.0%
!! CAAACAAAGGAAAAGTACCT+TGG + chr8_2:32721809-32721828 Msa1244430:CDS 35.0%
!! AGGAAAAGTACCTTGGAATA+AGG + chr8_2:32721816-32721835 Msa1244430:CDS 35.0%
!! GGAAAAGTACCTTGGAATAA+GGG + chr8_2:32721817-32721836 Msa1244430:CDS 35.0%
!!! TTAGGCAGGGTTTTAAATAG+AGG + chr8_2:32722080-32722099 Msa1244430:intron 35.0%
!!! AGGGTTTTAAATAGAGGTTG+CGG + chr8_2:32722086-32722105 Msa1244430:intron 35.0%
ATCTCAGAGTCCTAAAATCA+AGG - chr8_2:32722192-32722211 None:intergenic 35.0%
!!! AGGACTCTGAGATACTATTT+TGG + chr8_2:32722199-32722218 Msa1244430:intron 35.0%
CAATTAGCATCTGACTAATG+AGG - chr8_2:32722241-32722260 None:intergenic 35.0%
CTCATTAGTCAGATGCTAAT+TGG + chr8_2:32722239-32722258 Msa1244430:intron 35.0%
!! TTCTTTTACTTGGTAGTTCC+TGG + chr8_2:32722278-32722297 Msa1244430:intron 35.0%
AATGACCAGAAGTGAATCAT+GGG - chr8_2:32722304-32722323 None:intergenic 35.0%
!!! TTTTCAGGTGAAGAAGAAGA+TGG + chr8_2:32722356-32722375 Msa1244430:intron 35.0%
TTGTGTTTACCTATGACAAC+GGG - chr8_2:32722391-32722410 None:intergenic 35.0%
CTTGTGTTTACCTATGACAA+CGG - chr8_2:32722392-32722411 None:intergenic 35.0%
TAAGCTTACAATCTGTCTTG+AGG - chr8_2:32722445-32722464 None:intergenic 35.0%
GATAGCAAAAACCTGATAGT+TGG + chr8_2:32722749-32722768 Msa1244430:three_prime_UTR 35.0%
AGACCACATATAGATAGAAC+CGG + chr8_2:32720924-32720943 Msa1244430:five_prime_UTR 35.0%
GAAAAGGAACATGAATGAGT+TGG - chr8_2:32720969-32720988 None:intergenic 35.0%
TCAATATAATCACAAGTGCC+AGG - chr8_2:32721153-32721172 None:intergenic 35.0%
GCAAAATAATCCTTGAATGG+AGG + chr8_2:32721262-32721281 Msa1244430:intron 35.0%
ACTAACATAGTCTGCATTCA+AGG - chr8_2:32721310-32721329 None:intergenic 35.0%
ACTAACAGAGTGTACATTCA+GGG - chr8_2:32721342-32721361 None:intergenic 35.0%
ACCAACAAGGTCTATATTCA+GGG + chr8_2:32721382-32721401 Msa1244430:intron 35.0%
TTTGCAATTTCTCTGCATTG+AGG + chr8_2:32721410-32721429 Msa1244430:intron 35.0%
TTGCAATTTCTCTGCATTGA+GGG + chr8_2:32721411-32721430 Msa1244430:intron 35.0%
! ATATGATTCAAAGGAGTGTG+TGG - chr8_2:32721574-32721593 None:intergenic 35.0%
! ACAACTTTTGAGCAATAGGT+TGG + chr8_2:32721618-32721637 Msa1244430:CDS 35.0%
TTGATTTAGGGATTGTTGGA+GGG - chr8_2:32721663-32721682 None:intergenic 35.0%
TTGTTCAACATTGTGGTGTT+CGG - chr8_2:32721707-32721726 None:intergenic 35.0%
CTCTTGATAAAGAGAGAATG+AGG + chr8_2:32721767-32721786 Msa1244430:CDS 35.0%
AGAATGAGGAGAATGAGAAT+AGG + chr8_2:32721781-32721800 Msa1244430:CDS 35.0%
! AGAATAGGACTAGCAAACAA+AGG + chr8_2:32721796-32721815 Msa1244430:CDS 35.0%
!! CAAACAAAGGAAAAGTACCT+TGG + chr8_2:32721809-32721828 Msa1244430:CDS 35.0%
!! AGGAAAAGTACCTTGGAATA+AGG + chr8_2:32721816-32721835 Msa1244430:CDS 35.0%
!! GGAAAAGTACCTTGGAATAA+GGG + chr8_2:32721817-32721836 Msa1244430:CDS 35.0%
!!! TTAGGCAGGGTTTTAAATAG+AGG + chr8_2:32722080-32722099 Msa1244430:intron 35.0%
!!! AGGGTTTTAAATAGAGGTTG+CGG + chr8_2:32722086-32722105 Msa1244430:intron 35.0%
ATCTCAGAGTCCTAAAATCA+AGG - chr8_2:32722192-32722211 None:intergenic 35.0%
!!! AGGACTCTGAGATACTATTT+TGG + chr8_2:32722199-32722218 Msa1244430:intron 35.0%
CAATTAGCATCTGACTAATG+AGG - chr8_2:32722241-32722260 None:intergenic 35.0%
CTCATTAGTCAGATGCTAAT+TGG + chr8_2:32722239-32722258 Msa1244430:intron 35.0%
!! TTCTTTTACTTGGTAGTTCC+TGG + chr8_2:32722278-32722297 Msa1244430:intron 35.0%
AATGACCAGAAGTGAATCAT+GGG - chr8_2:32722304-32722323 None:intergenic 35.0%
!!! TTTTCAGGTGAAGAAGAAGA+TGG + chr8_2:32722356-32722375 Msa1244430:intron 35.0%
TTGTGTTTACCTATGACAAC+GGG - chr8_2:32722391-32722410 None:intergenic 35.0%
CTTGTGTTTACCTATGACAA+CGG - chr8_2:32722392-32722411 None:intergenic 35.0%
TAAGCTTACAATCTGTCTTG+AGG - chr8_2:32722445-32722464 None:intergenic 35.0%
GATAGCAAAAACCTGATAGT+TGG + chr8_2:32722749-32722768 Msa1244430:three_prime_UTR 35.0%
TTGAAGTAGAGCATGTTGGT+TGG - chr8_2:32721011-32721030 None:intergenic 40.0%
! TGAGTTGAAGTAGAGCATGT+TGG - chr8_2:32721015-32721034 None:intergenic 40.0%
TTAAGATTGAAGGCTTGTCC+CGG + chr8_2:32721110-32721129 Msa1244430:intron 40.0%
TATAATCACAAGTGCCAGGA+CGG - chr8_2:32721149-32721168 None:intergenic 40.0%
! AGTCACTTTAGACCCTGAAT+AGG + chr8_2:32721200-32721219 Msa1244430:intron 40.0%
GACGACTCATTTCCTATTCA+GGG - chr8_2:32721215-32721234 None:intergenic 40.0%
TGACGACTCATTTCCTATTC+AGG - chr8_2:32721216-32721235 None:intergenic 40.0%
GACTAACAGAGTGTACATTC+AGG - chr8_2:32721343-32721362 None:intergenic 40.0%
GACCTTGTTGGTCAATTTCA+GGG - chr8_2:32721374-32721393 None:intergenic 40.0%
AGACCTTGTTGGTCAATTTC+AGG - chr8_2:32721375-32721394 None:intergenic 40.0%
GACCAACAAGGTCTATATTC+AGG + chr8_2:32721381-32721400 Msa1244430:intron 40.0%
TCCCTGAATATAGACCTTGT+TGG - chr8_2:32721386-32721405 None:intergenic 40.0%
GAAAATGTTGTCAGTGTGAG+AGG + chr8_2:32721538-32721557 Msa1244430:intron 40.0%
! GGCAACAACTTTTGAGCAAT+AGG + chr8_2:32721614-32721633 Msa1244430:CDS 40.0%
TGATTTAGGGATTGTTGGAG+GGG - chr8_2:32721662-32721681 None:intergenic 40.0%
! GTTGATTTAGGGATTGTTGG+AGG - chr8_2:32721664-32721683 None:intergenic 40.0%
AAGTACCTTGGAATAAGGGA+AGG + chr8_2:32721821-32721840 Msa1244430:CDS 40.0%
TGTTTCCTTCCCTTATTCCA+AGG - chr8_2:32721829-32721848 None:intergenic 40.0%
TTCTCATCCTAATTCGCTCA+CGG - chr8_2:32721942-32721961 None:intergenic 40.0%
! GAGAACATTAGAGGCTTTGA+AGG + chr8_2:32721957-32721976 Msa1244430:CDS 40.0%
TCTTACTTGACTTCACCTTG+GGG - chr8_2:32721984-32722003 None:intergenic 40.0%
CTCTTACTTGACTTCACCTT+GGG - chr8_2:32721985-32722004 None:intergenic 40.0%
ACTCTTACTTGACTTCACCT+TGG - chr8_2:32721986-32722005 None:intergenic 40.0%
GTTAAATGTGGCCTCAATTG+CGG + chr8_2:32722118-32722137 Msa1244430:intron 40.0%
GAATGACCAGAAGTGAATCA+TGG - chr8_2:32722305-32722324 None:intergenic 40.0%
TGTGTTTACCTATGACAACG+GGG - chr8_2:32722390-32722409 None:intergenic 40.0%
TTGAAGTAGAGCATGTTGGT+TGG - chr8_2:32721011-32721030 None:intergenic 40.0%
! TGAGTTGAAGTAGAGCATGT+TGG - chr8_2:32721015-32721034 None:intergenic 40.0%
TTAAGATTGAAGGCTTGTCC+CGG + chr8_2:32721110-32721129 Msa1244430:intron 40.0%
TATAATCACAAGTGCCAGGA+CGG - chr8_2:32721149-32721168 None:intergenic 40.0%
! AGTCACTTTAGACCCTGAAT+AGG + chr8_2:32721200-32721219 Msa1244430:intron 40.0%
GACGACTCATTTCCTATTCA+GGG - chr8_2:32721215-32721234 None:intergenic 40.0%
TGACGACTCATTTCCTATTC+AGG - chr8_2:32721216-32721235 None:intergenic 40.0%
GACTAACAGAGTGTACATTC+AGG - chr8_2:32721343-32721362 None:intergenic 40.0%
GACCTTGTTGGTCAATTTCA+GGG - chr8_2:32721374-32721393 None:intergenic 40.0%
AGACCTTGTTGGTCAATTTC+AGG - chr8_2:32721375-32721394 None:intergenic 40.0%
GACCAACAAGGTCTATATTC+AGG + chr8_2:32721381-32721400 Msa1244430:intron 40.0%
TCCCTGAATATAGACCTTGT+TGG - chr8_2:32721386-32721405 None:intergenic 40.0%
GAAAATGTTGTCAGTGTGAG+AGG + chr8_2:32721538-32721557 Msa1244430:intron 40.0%
! GGCAACAACTTTTGAGCAAT+AGG + chr8_2:32721614-32721633 Msa1244430:CDS 40.0%
TGATTTAGGGATTGTTGGAG+GGG - chr8_2:32721662-32721681 None:intergenic 40.0%
! GTTGATTTAGGGATTGTTGG+AGG - chr8_2:32721664-32721683 None:intergenic 40.0%
AAGTACCTTGGAATAAGGGA+AGG + chr8_2:32721821-32721840 Msa1244430:CDS 40.0%
TGTTTCCTTCCCTTATTCCA+AGG - chr8_2:32721829-32721848 None:intergenic 40.0%
TTCTCATCCTAATTCGCTCA+CGG - chr8_2:32721942-32721961 None:intergenic 40.0%
! GAGAACATTAGAGGCTTTGA+AGG + chr8_2:32721957-32721976 Msa1244430:CDS 40.0%
TCTTACTTGACTTCACCTTG+GGG - chr8_2:32721984-32722003 None:intergenic 40.0%
CTCTTACTTGACTTCACCTT+GGG - chr8_2:32721985-32722004 None:intergenic 40.0%
ACTCTTACTTGACTTCACCT+TGG - chr8_2:32721986-32722005 None:intergenic 40.0%
GTTAAATGTGGCCTCAATTG+CGG + chr8_2:32722118-32722137 Msa1244430:intron 40.0%
GAATGACCAGAAGTGAATCA+TGG - chr8_2:32722305-32722324 None:intergenic 40.0%
TGTGTTTACCTATGACAACG+GGG - chr8_2:32722390-32722409 None:intergenic 40.0%
GCTCCGGTTCTATCTATATG+TGG - chr8_2:32720930-32720949 None:intergenic 45.0%
GAGCAGTTAGGAAGGTGAAA+AGG - chr8_2:32720985-32721004 None:intergenic 45.0%
GTTGGAAAGAGCAGTTAGGA+AGG - chr8_2:32720993-32721012 None:intergenic 45.0%
GTTGGTTGGAAAGAGCAGTT+AGG - chr8_2:32720997-32721016 None:intergenic 45.0%
GCACGGACACTTAAGATTGA+AGG + chr8_2:32721100-32721119 Msa1244430:intron 45.0%
AACAGAGTCTCCTCCATTCA+AGG - chr8_2:32721275-32721294 None:intergenic 45.0%
GTCCCTGAAATTGACCAACA+AGG + chr8_2:32721369-32721388 Msa1244430:intron 45.0%
TCTCATCCTAATTCGCTCAC+GGG - chr8_2:32721941-32721960 None:intergenic 45.0%
CGGAGAATCGCAGTTAAATG+TGG + chr8_2:32722106-32722125 Msa1244430:intron 45.0%
TGTTCCCAAAACCGCAATTG+AGG - chr8_2:32722132-32722151 None:intergenic 45.0%
GCTTACAATCTGTCTTGAGG+AGG - chr8_2:32722442-32722461 None:intergenic 45.0%
CGCTCCAAATGTTCAATCCT+GGG - chr8_2:32722714-32722733 None:intergenic 45.0%
ACGCTCCAAATGTTCAATCC+TGG - chr8_2:32722715-32722734 None:intergenic 45.0%
GCTCCGGTTCTATCTATATG+TGG - chr8_2:32720930-32720949 None:intergenic 45.0%
GAGCAGTTAGGAAGGTGAAA+AGG - chr8_2:32720985-32721004 None:intergenic 45.0%
GTTGGAAAGAGCAGTTAGGA+AGG - chr8_2:32720993-32721012 None:intergenic 45.0%
GTTGGTTGGAAAGAGCAGTT+AGG - chr8_2:32720997-32721016 None:intergenic 45.0%
GCACGGACACTTAAGATTGA+AGG + chr8_2:32721100-32721119 Msa1244430:intron 45.0%
AACAGAGTCTCCTCCATTCA+AGG - chr8_2:32721275-32721294 None:intergenic 45.0%
GTCCCTGAAATTGACCAACA+AGG + chr8_2:32721369-32721388 Msa1244430:intron 45.0%
TCTCATCCTAATTCGCTCAC+GGG - chr8_2:32721941-32721960 None:intergenic 45.0%
CGGAGAATCGCAGTTAAATG+TGG + chr8_2:32722106-32722125 Msa1244430:intron 45.0%
TGTTCCCAAAACCGCAATTG+AGG - chr8_2:32722132-32722151 None:intergenic 45.0%
GCTTACAATCTGTCTTGAGG+AGG - chr8_2:32722442-32722461 None:intergenic 45.0%
CGCTCCAAATGTTCAATCCT+GGG - chr8_2:32722714-32722733 None:intergenic 45.0%
ACGCTCCAAATGTTCAATCC+TGG - chr8_2:32722715-32722734 None:intergenic 45.0%
!!! ACATAATATTTTTTTTTTTA+AGG - chr8_2:32722416-32722435 None:intergenic 5.0%
!!! ACATAATATTTTTTTTTTTA+AGG - chr8_2:32722416-32722435 None:intergenic 5.0%
AGTTGGAACTCAGACACCAG+CGG - chr8_2:32720952-32720971 None:intergenic 50.0%
TCAGTGTCGTGTGTCGTGTA+TGG + chr8_2:32721478-32721497 Msa1244430:intron 50.0%
AAGGGAAGGAAACACACTGC+AGG + chr8_2:32721835-32721854 Msa1244430:CDS 50.0%
! TGTGGCCTCAATTGCGGTTT+TGG + chr8_2:32722124-32722143 Msa1244430:intron 50.0%
! GTGGCCTCAATTGCGGTTTT+GGG + chr8_2:32722125-32722144 Msa1244430:intron 50.0%
CTGAACATCCCCGTTGTCAT+AGG + chr8_2:32722379-32722398 Msa1244430:exon 50.0%
ATGTTCAATCCTGGGCGTGA+GGG - chr8_2:32722706-32722725 None:intergenic 50.0%
AATGTTCAATCCTGGGCGTG+AGG - chr8_2:32722707-32722726 None:intergenic 50.0%
CACGCCCAGGATTGAACATT+TGG + chr8_2:32722707-32722726 Msa1244430:three_prime_UTR 50.0%
! CATTTGGAGCGTGACAAGAG+TGG + chr8_2:32722723-32722742 Msa1244430:three_prime_UTR 50.0%
!! CCTGATAGTTGGTGACCCAA+CGG + chr8_2:32722760-32722779 Msa1244430:three_prime_UTR 50.0%
!! CTGATAGTTGGTGACCCAAC+GGG + chr8_2:32722761-32722780 Msa1244430:three_prime_UTR 50.0%
AGTTGGAACTCAGACACCAG+CGG - chr8_2:32720952-32720971 None:intergenic 50.0%
TCAGTGTCGTGTGTCGTGTA+TGG + chr8_2:32721478-32721497 Msa1244430:intron 50.0%
AAGGGAAGGAAACACACTGC+AGG + chr8_2:32721835-32721854 Msa1244430:CDS 50.0%
! TGTGGCCTCAATTGCGGTTT+TGG + chr8_2:32722124-32722143 Msa1244430:intron 50.0%
! GTGGCCTCAATTGCGGTTTT+GGG + chr8_2:32722125-32722144 Msa1244430:intron 50.0%
CTGAACATCCCCGTTGTCAT+AGG + chr8_2:32722379-32722398 Msa1244430:exon 50.0%
ATGTTCAATCCTGGGCGTGA+GGG - chr8_2:32722706-32722725 None:intergenic 50.0%
AATGTTCAATCCTGGGCGTG+AGG - chr8_2:32722707-32722726 None:intergenic 50.0%
CACGCCCAGGATTGAACATT+TGG + chr8_2:32722707-32722726 Msa1244430:three_prime_UTR 50.0%
! CATTTGGAGCGTGACAAGAG+TGG + chr8_2:32722723-32722742 Msa1244430:three_prime_UTR 50.0%
!! CCTGATAGTTGGTGACCCAA+CGG + chr8_2:32722760-32722779 Msa1244430:three_prime_UTR 50.0%
!! CTGATAGTTGGTGACCCAAC+GGG + chr8_2:32722761-32722780 Msa1244430:three_prime_UTR 50.0%
ATAGATAGAACCGGAGCCGC+TGG + chr8_2:32720933-32720952 Msa1244430:five_prime_UTR 55.0%
TTGAAGGCTTGTCCCGGTGT+CGG + chr8_2:32721116-32721135 Msa1244430:intron 55.0%
CAGAGACCCGTGAGCGAATT+AGG + chr8_2:32721932-32721951 Msa1244430:intron 55.0%
!! AGAGGCTTTGAAGGACCCCA+AGG + chr8_2:32721966-32721985 Msa1244430:CDS 55.0%
CCAGAAGTGAATCATGGGCC+AGG - chr8_2:32722299-32722318 None:intergenic 55.0%
CCTGGCCCATGATTCACTTC+TGG + chr8_2:32722296-32722315 Msa1244430:intron 55.0%
CCGTTGGGTCACCAACTATC+AGG - chr8_2:32722763-32722782 None:intergenic 55.0%
ATAGATAGAACCGGAGCCGC+TGG + chr8_2:32720933-32720952 Msa1244430:five_prime_UTR 55.0%
TTGAAGGCTTGTCCCGGTGT+CGG + chr8_2:32721116-32721135 Msa1244430:intron 55.0%
CAGAGACCCGTGAGCGAATT+AGG + chr8_2:32721932-32721951 Msa1244430:intron 55.0%
!! AGAGGCTTTGAAGGACCCCA+AGG + chr8_2:32721966-32721985 Msa1244430:CDS 55.0%
CCAGAAGTGAATCATGGGCC+AGG - chr8_2:32722299-32722318 None:intergenic 55.0%
CCTGGCCCATGATTCACTTC+TGG + chr8_2:32722296-32722315 Msa1244430:intron 55.0%
CCGTTGGGTCACCAACTATC+AGG - chr8_2:32722763-32722782 None:intergenic 55.0%
AACTCAGACACCAGCGGCTC+CGG - chr8_2:32720946-32720965 None:intergenic 60.0%
GACGGCAATTGTCCGACACC+GGG - chr8_2:32721131-32721150 None:intergenic 60.0%
GGACGGCAATTGTCCGACAC+CGG - chr8_2:32721132-32721151 None:intergenic 60.0%
GTGTCGGACAATTGCCGTCC+TGG + chr8_2:32721132-32721151 Msa1244430:intron 60.0%
CGCTCACGGGTCTCTGCAAT+TGG - chr8_2:32721928-32721947 None:intergenic 60.0%
TCAATCCTGGGCGTGAGGGT+AGG - chr8_2:32722702-32722721 None:intergenic 60.0%
AACTCAGACACCAGCGGCTC+CGG - chr8_2:32720946-32720965 None:intergenic 60.0%
GACGGCAATTGTCCGACACC+GGG - chr8_2:32721131-32721150 None:intergenic 60.0%
GGACGGCAATTGTCCGACAC+CGG - chr8_2:32721132-32721151 None:intergenic 60.0%
GTGTCGGACAATTGCCGTCC+TGG + chr8_2:32721132-32721151 Msa1244430:intron 60.0%
CGCTCACGGGTCTCTGCAAT+TGG - chr8_2:32721928-32721947 None:intergenic 60.0%
TCAATCCTGGGCGTGAGGGT+AGG - chr8_2:32722702-32722721 None:intergenic 60.0%
!! GTTGGTGACCCAACGGGTCC+TGG + chr8_2:32722767-32722786 Msa1244430:three_prime_UTR 65.0%
!! GTTGGTGACCCAACGGGTCC+TGG + chr8_2:32722767-32722786 Msa1244430:three_prime_UTR 65.0%
TTGGGCCTACCCTCACGCCC+AGG + chr8_2:32722694-32722713 Msa1244430:three_prime_UTR 70.0%
TTGGGCCTACCCTCACGCCC+AGG + chr8_2:32722694-32722713 Msa1244430:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 32720920 32722793 32720920 ID=Msa1244430;Name=Msa1244430
chr8_2 mRNA 32720920 32722793 32720920 ID=Msa1244430-mRNA-1;Parent=Msa1244430;Name=Msa1244430-mRNA-1;_AED=0.00;_eAED=0.00;_QI=97|1|1|1|0.33|0.25|4|411|135
chr8_2 exon 32720920 32721036 32720920 ID=Msa1244430-mRNA-1:exon:10679;Parent=Msa1244430-mRNA-1
chr8_2 exon 32721552 32721856 32721552 ID=Msa1244430-mRNA-1:exon:10680;Parent=Msa1244430-mRNA-1
chr8_2 exon 32721935 32721997 32721935 ID=Msa1244430-mRNA-1:exon:10681;Parent=Msa1244430-mRNA-1
chr8_2 exon 32722363 32722793 32722363 ID=Msa1244430-mRNA-1:exon:10682;Parent=Msa1244430-mRNA-1
chr8_2 five_prime_UTR 32720920 32721016 32720920 ID=Msa1244430-mRNA-1:five_prime_utr;Parent=Msa1244430-mRNA-1
chr8_2 CDS 32721017 32721036 32721017 ID=Msa1244430-mRNA-1:cds;Parent=Msa1244430-mRNA-1
chr8_2 CDS 32721552 32721856 32721552 ID=Msa1244430-mRNA-1:cds;Parent=Msa1244430-mRNA-1
chr8_2 CDS 32721935 32721997 32721935 ID=Msa1244430-mRNA-1:cds;Parent=Msa1244430-mRNA-1
chr8_2 CDS 32722363 32722382 32722363 ID=Msa1244430-mRNA-1:cds;Parent=Msa1244430-mRNA-1
chr8_2 three_prime_UTR 32722383 32722793 32722383 ID=Msa1244430-mRNA-1:three_prime_utr;Parent=Msa1244430-mRNA-1
Gene Sequence

>Msa1244430

ATGCTCTACTTCAACTCAATTGTGAGAGGAATGTCTGTTCCACACACTCCTTTGAATCATATTCCCAACAATTATTATTCAAGGCAACAACTTTTGAGCAATAGGTTGGATTGCGCTTGTACATTTTCCCCTCCAACAATCCCTAAATCAACATTGTCTTTTTCTGTTGATGCCGAACACCACAATGTTGAACAAGATTCTTTTGATTATTTGAACAATGTCGACTCTCTAAAATCTCTTGATAAAGAGAGAATGAGGAGAATGAGAATAGGACTAGCAAACAAAGGAAAAGTACCTTGGAATAAGGGAAGGAAACACACTGCAGAGACCCGTGAGCGAATTAGGATGAGAACATTAGAGGCTTTGAAGGACCCCAAGGTGAAGTCAAGTGAAGAAGAAGATGGCTGA

Protein sequence

>Msa1244430

MLYFNSIVRGMSVPHTPLNHIPNNYYSRQQLLSNRLDCACTFSPPTIPKSTLSFSVDAEHHNVEQDSFDYLNNVDSLKSLDKERMRRMRIGLANKGKVPWNKGRKHTAETRERIRMRTLEALKDPKVKSSEEEDG*