AlfalfaGEDB | Msa1315590

M. sativa cultivar zhongmu-4 / Msa1315590

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315590	G7L9W5	94.512	164	9	0	1	164	1	164	3.15e-110	320

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa1315590	0.847469	1.133859e-59	-8.615850e-47
Msa0001940	Msa1315590	0.801137	1.037492e-48	-8.615850e-47
Msa0009180	Msa1315590	0.808699	2.723485e-50	-8.615850e-47
Msa0017950	Msa1315590	0.802857	4.597646e-49	-8.615850e-47
Msa0024550	Msa1315590	0.809795	1.585658e-50	-8.615850e-47
Msa0025330	Msa1315590	0.808448	3.081498e-50	-8.615850e-47
Msa0032920	Msa1315590	-0.806175	9.343768e-50	-8.615850e-47
Msa0032960	Msa1315590	-0.819752	9.844719e-53	-8.615850e-47
Msa0081390	Msa1315590	0.816987	4.164296e-52	-8.615850e-47
Msa0081450	Msa1315590	0.819542	1.099415e-52	-8.615850e-47
Msa0081520	Msa1315590	0.824149	9.438129e-54	-8.615850e-47
Msa0120400	Msa1315590	0.817284	3.571680e-52	-8.615850e-47
Msa0611210	Msa1315590	0.816329	5.850701e-52	-8.615850e-47
Msa0626450	Msa1315590	0.843225	1.596779e-58	-8.615850e-47
Msa0626490	Msa1315590	0.839336	1.683954e-57	-8.615850e-47
Msa0626510	Msa1315590	0.810065	1.387250e-50	-8.615850e-47
Msa0627450	Msa1315590	0.818414	1.984464e-52	-8.615850e-47
Msa0651550	Msa1315590	0.812522	4.064812e-51	-8.615850e-47
Msa0662340	Msa1315590	0.803736	3.023553e-49	-8.615850e-47
Msa0663390	Msa1315590	0.812809	3.516283e-51	-8.615850e-47
Msa0664600	Msa1315590	0.839040	2.009532e-57	-8.615850e-47
Msa0697160	Msa1315590	0.824469	7.937909e-54	-8.615850e-47
Msa0707250	Msa1315590	0.806313	8.738334e-50	-8.615850e-47
Msa0710800	Msa1315590	0.823247	1.535014e-53	-8.615850e-47
Msa0733390	Msa1315590	0.803569	3.275111e-49	-8.615850e-47
Msa0741220	Msa1315590	0.841162	5.617486e-58	-8.615850e-47
Msa0756490	Msa1315590	0.802343	5.868342e-49	-8.615850e-47
Msa0767300	Msa1315590	0.814093	1.836391e-51	-8.615850e-47
Msa0769180	Msa1315590	0.810061	1.389778e-50	-8.615850e-47
Msa0778590	Msa1315590	0.810060	1.390554e-50	-8.615850e-47
Msa0795870	Msa1315590	0.837742	4.343227e-57	-8.615850e-47
Msa0815960	Msa1315590	0.802339	5.879658e-49	-8.615850e-47
Msa0833650	Msa1315590	0.835709	1.432897e-56	-8.615850e-47
Msa0835490	Msa1315590	0.816296	5.949819e-52	-8.615850e-47
Msa0121090	Msa1315590	0.801417	9.093841e-49	-8.615850e-47
Msa0131900	Msa1315590	0.802488	5.477726e-49	-8.615850e-47
Msa0160130	Msa1315590	0.808053	3.741357e-50	-8.615850e-47
Msa0173690	Msa1315590	0.817917	2.570705e-52	-8.615850e-47
Msa0173890	Msa1315590	0.804237	2.378315e-49	-8.615850e-47
Msa0174450	Msa1315590	0.842374	2.689533e-58	-8.615850e-47
Msa0211150	Msa1315590	0.811259	7.654843e-51	-8.615850e-47
Msa0221000	Msa1315590	0.827290	1.697472e-54	-8.615850e-47
Msa0225100	Msa1315590	0.843030	1.800282e-58	-8.615850e-47
Msa0225860	Msa1315590	0.831144	1.971947e-55	-8.615850e-47
Msa1225860	Msa1315590	-0.808774	2.625604e-50	-8.615850e-47
Msa1228200	Msa1315590	0.835449	1.666982e-56	-8.615850e-47
Msa1236410	Msa1315590	0.815663	8.237335e-52	-8.615850e-47
Msa1263490	Msa1315590	0.829796	4.212700e-55	-8.615850e-47
Msa1277220	Msa1315590	0.890132	1.298511e-73	-8.615850e-47
Msa1297230	Msa1315590	0.834115	3.610957e-56	-8.615850e-47
Msa1314650	Msa1315590	0.827296	1.692088e-54	-8.615850e-47
Msa1315590	Msa1328710	0.804579	2.018717e-49	-8.615850e-47
Msa1315590	Msa1343430	0.820880	5.429423e-53	-8.615850e-47
Msa1315590	Msa1346560	0.805789	1.126699e-49	-8.615850e-47
Msa1315590	Msa1356830	0.808133	3.597718e-50	-8.615850e-47
Msa1315590	Msa1360440	0.800635	1.313624e-48	-8.615850e-47
Msa1315590	Msa1366340	0.834891	2.305186e-56	-8.615850e-47
Msa1315590	Msa1372040	0.800142	1.655926e-48	-8.615850e-47
Msa1315590	Msa1382400	0.805039	1.617772e-49	-8.615850e-47
Msa1315590	Msa1387620	0.825453	4.649606e-54	-8.615850e-47
Msa1315590	Msa1433810	0.807082	6.012576e-50	-8.615850e-47
Msa1315590	Msa1437940	0.802578	5.248367e-49	-8.615850e-47
Msa1315590	Msa1440960	0.828434	9.011912e-55	-8.615850e-47
Msa1315590	Msa1449480	0.819092	1.392543e-52	-8.615850e-47
Msa1315590	Msa1450100	0.800740	1.250413e-48	-8.615850e-47
Msa1315590	Msa1451160	0.805128	1.549970e-49	-8.615850e-47
Msa1315590	Msa1464810	0.801974	6.989796e-49	-8.615850e-47
Msa0369790	Msa1315590	0.806163	9.398966e-50	-8.615850e-47
Msa0378720	Msa1315590	0.853606	2.138444e-61	-8.615850e-47
Msa0417880	Msa1315590	0.810250	1.265719e-50	-8.615850e-47
Msa0425170	Msa1315590	0.807813	4.207533e-50	-8.615850e-47
Msa0428370	Msa1315590	0.822942	1.808186e-53	-8.615850e-47
Msa0440440	Msa1315590	0.804942	1.695225e-49	-8.615850e-47
Msa0464000	Msa1315590	0.801072	1.069928e-48	-8.615850e-47
Msa0474730	Msa1315590	0.830525	2.796948e-55	-8.615850e-47
Msa1019430	Msa1315590	0.820887	5.408397e-53	-8.615850e-47
Msa1019470	Msa1315590	0.821301	4.342237e-53	-8.615850e-47
Msa1020510	Msa1315590	0.838133	3.447144e-57	-8.615850e-47
Msa1020670	Msa1315590	0.825625	4.233250e-54	-8.615850e-47
Msa1023500	Msa1315590	0.801350	9.386546e-49	-8.615850e-47
Msa1031930	Msa1315590	0.803386	3.573945e-49	-8.615850e-47
Msa1035960	Msa1315590	0.819425	1.169329e-52	-8.615850e-47
Msa1043370	Msa1315590	0.820683	6.024671e-53	-8.615850e-47
Msa1044680	Msa1315590	0.818032	2.422182e-52	-8.615850e-47
Msa1045140	Msa1315590	0.805991	1.021453e-49	-8.615850e-47
Msa1072940	Msa1315590	0.803403	3.545105e-49	-8.615850e-47
Msa1092010	Msa1315590	0.804428	2.170178e-49	-8.615850e-47
Msa1096970	Msa1315590	0.816800	4.587567e-52	-8.615850e-47
Msa1101090	Msa1315590	0.809393	1.934287e-50	-8.615850e-47
Msa0244640	Msa1315590	0.847063	1.465364e-59	-8.615850e-47
Msa0258310	Msa1315590	0.810582	1.072892e-50	-8.615850e-47
Msa0261340	Msa1315590	0.808080	3.692118e-50	-8.615850e-47
Msa0265850	Msa1315590	0.812596	3.915816e-51	-8.615850e-47
Msa0266180	Msa1315590	0.829702	4.440117e-55	-8.615850e-47
Msa0266350	Msa1315590	0.805087	1.580775e-49	-8.615850e-47
Msa0283330	Msa1315590	0.817899	2.595224e-52	-8.615850e-47
Msa0287740	Msa1315590	0.850527	1.603458e-60	-8.615850e-47
Msa0297790	Msa1315590	0.808650	2.790309e-50	-8.615850e-47
Msa0300270	Msa1315590	0.843194	1.627887e-58	-8.615850e-47
Msa0300320	Msa1315590	0.830766	2.441272e-55	-8.615850e-47
Msa0307270	Msa1315590	0.807806	4.222262e-50	-8.615850e-47
Msa0321620	Msa1315590	0.806857	6.711320e-50	-8.615850e-47
Msa0337700	Msa1315590	0.842113	3.152626e-58	-8.615850e-47
Msa0340500	Msa1315590	0.802869	4.572043e-49	-8.615850e-47
Msa1123380	Msa1315590	0.821194	4.596020e-53	-8.615850e-47
Msa1132840	Msa1315590	0.839753	1.312118e-57	-8.615850e-47
Msa1140210	Msa1315590	0.843225	1.597058e-58	-8.615850e-47
Msa1155170	Msa1315590	-0.826521	2.591909e-54	-8.615850e-47
Msa1160920	Msa1315590	0.804778	1.834822e-49	-8.615850e-47
Msa1167380	Msa1315590	0.819928	8.976643e-53	-8.615850e-47
Msa1186020	Msa1315590	0.811102	8.279261e-51	-8.615850e-47
Msa1199570	Msa1315590	0.800228	1.590123e-48	-8.615850e-47
Msa1205280	Msa1315590	0.825945	3.553884e-54	-8.615850e-47
Msa1209460	Msa1315590	0.801075	1.068203e-48	-8.615850e-47
Msa1223570	Msa1315590	0.804368	2.233962e-49	-8.615850e-47
Msa0530780	Msa1315590	0.807113	5.923681e-50	-8.615850e-47
Msa0546500	Msa1315590	0.801200	1.007085e-48	-8.615850e-47
Msa0547170	Msa1315590	0.835122	2.016794e-56	-8.615850e-47
Msa0548470	Msa1315590	0.809685	1.674812e-50	-8.615850e-47
Msa0557460	Msa1315590	0.810358	1.199185e-50	-8.615850e-47
Msa0571290	Msa1315590	0.801229	9.936775e-49	-8.615850e-47
Msa0580370	Msa1315590	0.840423	8.774893e-58	-8.615850e-47
Msa0581470	Msa1315590	0.801806	7.569293e-49	-8.615850e-47
Msa0583360	Msa1315590	-0.806908	6.545622e-50	-8.615850e-47
Msa0585560	Msa1315590	0.805648	1.206371e-49	-8.615850e-47
Msa0590830	Msa1315590	0.817887	2.611516e-52	-8.615850e-47
Msa0602460	Msa1315590	0.806268	8.934324e-50	-8.615850e-47
Msa0861510	Msa1315590	0.813980	1.944430e-51	-8.615850e-47
Msa0861600	Msa1315590	0.821417	4.082921e-53	-8.615850e-47
Msa0861850	Msa1315590	0.802718	4.912392e-49	-8.615850e-47
Msa0866520	Msa1315590	0.838774	2.354298e-57	-8.615850e-47
Msa0875290	Msa1315590	0.820659	6.103720e-53	-8.615850e-47
Msa0893800	Msa1315590	0.806439	8.221135e-50	-8.615850e-47
Msa0945110	Msa1315590	0.804242	2.373045e-49	-8.615850e-47
Msa0960600	Msa1315590	0.811084	8.355542e-51	-8.615850e-47
Msa0967380	Msa1315590	0.815826	7.575046e-52	-8.615850e-47
Msa0967870	Msa1315590	0.834136	3.568816e-56	-8.615850e-47
Msa0972100	Msa1315590	0.828149	1.055569e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315590	MtrunA17_Chr8g0345341	94.512	164	9	0	1	164	1	164	6.06e-114	320

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 45 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTAAACAAACTTGTTATTAA+AGG	0.220128	8_4:-15070162	None:intergenic
AGTCCAAATACTAGCATATT+TGG	0.220959	8_4:+15070353	Msa1315590:three_prime_UTR
GTTATTAAAGGTCCAGAAAA+TGG	0.227908	8_4:-15070150	None:intergenic
TTTAGCTATAGATTTGTTAT+TGG	0.228772	8_4:-15070049	None:intergenic
TAACCAAATATGCTAGTATT+TGG	0.240921	8_4:-15070356	None:intergenic
TTCTCTTCTGATCTCTTTGT+TGG	0.245231	8_4:-15070186	None:intergenic
CTTCCCATCATAACCTTTGT+AGG	0.252175	8_4:-15070118	None:intergenic
AAAAGACAAGGCCATGTTTC+TGG	0.267409	8_4:+15070081	Msa1315590:CDS
AAAATTGAGTGCTAATGTTT+TGG	0.273700	8_4:+15070493	Msa1315590:three_prime_UTR
TTTCCCTTTCTCACTTTCTC+TGG	0.320462	8_4:-15069958	None:intergenic
ACATTAACTTCATTCTATAT+AGG	0.343615	8_4:+15068476	None:intergenic
TGTTGATGGAGAGTCATATA+AGG	0.356203	8_4:-15070216	None:intergenic
CCAAGGCATTATGATGACTA+TGG	0.364903	8_4:+15069324	Msa1315590:CDS
GGAAAAGTTCCCTGGTTTCA+TGG	0.375096	8_4:+15069989	Msa1315590:CDS
CCTCATCCTGTTCAAAACTA+TGG	0.408153	8_4:+15070246	Msa1315590:CDS
AACTCCTACAAAGGTTATGA+TGG	0.409233	8_4:+15070114	Msa1315590:CDS
TGTGTAGATGGATAATCCTT+AGG	0.411445	8_4:+15069197	Msa1315590:intron
CCTTTGTAGGAGTTAAGTAT+TGG	0.416425	8_4:-15070105	None:intergenic
AGGACCAGAGAAAGTGAGAA+AGG	0.425794	8_4:+15069954	Msa1315590:CDS
ATGAAGTTTGATAGTTCCTA+AGG	0.441554	8_4:-15069213	None:intergenic
ATGATTTATGAAGCACAAAC+AGG	0.457066	8_4:-15070442	None:intergenic
CTATGGATTTGATCTGCAAC+AGG	0.457681	8_4:+15069341	Msa1315590:CDS
AAACTATGGTCCTCTTTATG+TGG	0.476561	8_4:+15070260	Msa1315590:CDS
TGAGAAAGGGAAAGAAATCA+TGG	0.486173	8_4:+15069968	Msa1315590:CDS
GGACCAGAGAAAGTGAGAAA+GGG	0.486612	8_4:+15069955	Msa1315590:CDS
CAAGTTTCCACCATGAAACC+AGG	0.489863	8_4:-15069999	None:intergenic
CTAGTTTCTGGCTGAAGCAA+AGG	0.513346	8_4:+15069867	Msa1315590:intron
AGTTAAGTAACCACATAAAG+AGG	0.516609	8_4:-15070270	None:intergenic
CCGATGGTATGTGCTATTGT+TGG	0.517353	8_4:+15070411	Msa1315590:three_prime_UTR
GAAACTTGACAAGAAAAGTA+AGG	0.522042	8_4:+15070014	Msa1315590:CDS
GAAATCATGGAAAAGTTCCC+TGG	0.522925	8_4:+15069981	Msa1315590:CDS
GCATCGACACTTCAGATTGA+AGG	0.534329	8_4:+15070314	Msa1315590:three_prime_UTR
CAAAATCATTCATCTCACTA+AGG	0.539061	8_4:-15070557	None:intergenic
CCATAGTCATCATAATGCCT+TGG	0.544319	8_4:-15069324	None:intergenic
CCAATACTTAACTCCTACAA+AGG	0.560845	8_4:+15070105	Msa1315590:CDS
TCAACAGTGTACCCTGAAGA+AGG	0.568735	8_4:+15069919	Msa1315590:CDS
ACTCCTACAAAGGTTATGAT+GGG	0.578643	8_4:+15070115	Msa1315590:CDS
CTGGCTGAAGCAAAGGAGCA+TGG	0.602825	8_4:+15069874	Msa1315590:CDS
CTTCAGATTGAAGGAGTCAG+TGG	0.623179	8_4:+15070323	Msa1315590:three_prime_UTR
TAAGTATTGGACCAGAAACA+TGG	0.636616	8_4:-15070092	None:intergenic
AAAGTTCCCTGGTTTCATGG+TGG	0.673568	8_4:+15069992	Msa1315590:CDS
ACAATTCTTCAACACAACCA+AGG	0.687130	8_4:+15069307	Msa1315590:CDS
AAGTTTCCACCATGAAACCA+GGG	0.691429	8_4:-15069998	None:intergenic
AAAGTTTCTGAGAAAAGACA+AGG	0.701580	8_4:+15070069	Msa1315590:CDS
CCAACAATAGCACATACCAT+CGG	0.709618	8_4:-15070411	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAATTGATAATATTATCTAA+TGG	+	chr8_4:15069757-15069776	Msa1315590:intron	10.0%
!!!	AAATTGATAATATTATCTAA+TGG	+	chr8_4:15069757-15069776	Msa1315590:intron	10.0%
!!	AGTTTATTATATTTGTAGAT+AGG	+	chr8_4:15068788-15068807	Msa1315590:intron	15.0%
!!	AAAAAATTAAAATCACTCTA+AGG	-	chr8_4:15068833-15068852	None:intergenic	15.0%
!!!	TTAAACAAACTTGTTATTAA+AGG	-	chr8_4:15070165-15070184	None:intergenic	15.0%
!!	AGTTTATTATATTTGTAGAT+AGG	+	chr8_4:15068788-15068807	Msa1315590:intron	15.0%
!!	AAAAAATTAAAATCACTCTA+AGG	-	chr8_4:15068833-15068852	None:intergenic	15.0%
!!!	TTAAACAAACTTGTTATTAA+AGG	-	chr8_4:15070165-15070184	None:intergenic	15.0%
!!!	ATTCTATATAGGATCTTTTT+TGG	+	chr8_4:15068487-15068506	Msa1315590:five_prime_UTR	20.0%
!!!	ACCATTTTGTTATTCTTTAT+TGG	+	chr8_4:15068853-15068872	Msa1315590:intron	20.0%
!!	GCATTATTAGTATAGTAATT+TGG	+	chr8_4:15068875-15068894	Msa1315590:intron	20.0%
!!!	TTTAGAGTTTTACAAAATCA+CGG	+	chr8_4:15069449-15069468	Msa1315590:intron	20.0%
!!!	TTTAGCTATAGATTTGTTAT+TGG	-	chr8_4:15070052-15070071	None:intergenic	20.0%
!!!	ATTCTATATAGGATCTTTTT+TGG	+	chr8_4:15068487-15068506	Msa1315590:five_prime_UTR	20.0%
!!!	ACCATTTTGTTATTCTTTAT+TGG	+	chr8_4:15068853-15068872	Msa1315590:intron	20.0%
!!	GCATTATTAGTATAGTAATT+TGG	+	chr8_4:15068875-15068894	Msa1315590:intron	20.0%
!!!	TTTAGAGTTTTACAAAATCA+CGG	+	chr8_4:15069449-15069468	Msa1315590:intron	20.0%
!!!	TTTAGCTATAGATTTGTTAT+TGG	-	chr8_4:15070052-15070071	None:intergenic	20.0%
!	GCCAATAAAGAATAACAAAA+TGG	-	chr8_4:15068857-15068876	None:intergenic	25.0%
!	ATTAGTATAGTAATTTGGTC+AGG	+	chr8_4:15068880-15068899	Msa1315590:intron	25.0%
!	TAAAACGAAAAATTGTACCA+GGG	-	chr8_4:15069373-15069392	None:intergenic	25.0%
!	TTAAAACGAAAAATTGTACC+AGG	-	chr8_4:15069374-15069393	None:intergenic	25.0%
!!	ACTAAATGCATTTGAAATCA+TGG	-	chr8_4:15069499-15069518	None:intergenic	25.0%
!!	TTTTGTGCAAGTTTGAATAA+CGG	+	chr8_4:15069599-15069618	Msa1315590:intron	25.0%
!	TTAAAACTTCAACAAAACCA+CGG	-	chr8_4:15069650-15069669	None:intergenic	25.0%
!!!	AGATTTTCACTCTTTGATTT+TGG	+	chr8_4:15069838-15069857	Msa1315590:intron	25.0%
!	TAACCAAATATGCTAGTATT+TGG	-	chr8_4:15070359-15070378	None:intergenic	25.0%
!!	TTTTGTAGCAAACGTTAAAT+AGG	-	chr8_4:15070477-15070496	None:intergenic	25.0%
!!	AAAATTGAGTGCTAATGTTT+TGG	+	chr8_4:15070493-15070512	Msa1315590:three_prime_UTR	25.0%
!	GCCAATAAAGAATAACAAAA+TGG	-	chr8_4:15068857-15068876	None:intergenic	25.0%
!	ATTAGTATAGTAATTTGGTC+AGG	+	chr8_4:15068880-15068899	Msa1315590:intron	25.0%
!	TAAAACGAAAAATTGTACCA+GGG	-	chr8_4:15069373-15069392	None:intergenic	25.0%
!	TTAAAACGAAAAATTGTACC+AGG	-	chr8_4:15069374-15069393	None:intergenic	25.0%
!!	ACTAAATGCATTTGAAATCA+TGG	-	chr8_4:15069499-15069518	None:intergenic	25.0%
!!	TTTTGTGCAAGTTTGAATAA+CGG	+	chr8_4:15069599-15069618	Msa1315590:intron	25.0%
!	TTAAAACTTCAACAAAACCA+CGG	-	chr8_4:15069650-15069669	None:intergenic	25.0%
!!!	AGATTTTCACTCTTTGATTT+TGG	+	chr8_4:15069838-15069857	Msa1315590:intron	25.0%
!	TAACCAAATATGCTAGTATT+TGG	-	chr8_4:15070359-15070378	None:intergenic	25.0%
!!	TTTTGTAGCAAACGTTAAAT+AGG	-	chr8_4:15070477-15070496	None:intergenic	25.0%
!!	AAAATTGAGTGCTAATGTTT+TGG	+	chr8_4:15070493-15070512	Msa1315590:three_prime_UTR	25.0%
!	ATTATTCTTTTTGCCAGTTG+AGG	+	chr8_4:15068624-15068643	Msa1315590:intron	30.0%
	ATTAATGCACCTTCTTATTG+AGG	+	chr8_4:15068956-15068975	Msa1315590:intron	30.0%
	AAGAAATTGCCTCAATAAGA+AGG	-	chr8_4:15068968-15068987	None:intergenic	30.0%
	GAAAAGAAATCAATGTCACA+TGG	-	chr8_4:15069055-15069074	None:intergenic	30.0%
	TACTATGTGGATGTACAAAA+GGG	-	chr8_4:15069095-15069114	None:intergenic	30.0%
	TTACTATGTGGATGTACAAA+AGG	-	chr8_4:15069096-15069115	None:intergenic	30.0%
	AATGTCTCATCTCATTGTAA+TGG	-	chr8_4:15069170-15069189	None:intergenic	30.0%
!	ACATTGTTCTTTTGTGTAGA+TGG	+	chr8_4:15069185-15069204	Msa1315590:intron	30.0%
!	ATGAAGTTTGATAGTTCCTA+AGG	-	chr8_4:15069216-15069235	None:intergenic	30.0%
!	CTCTTGAAGTTTTCATATCT+TGG	+	chr8_4:15069239-15069258	Msa1315590:five_prime_UTR	30.0%
	AAACATAGTTACTGCATGTT+TGG	+	chr8_4:15069392-15069411	Msa1315590:intron	30.0%
!	TTTTCTTAGATCCTTCTTCA+GGG	-	chr8_4:15069933-15069952	None:intergenic	30.0%
!	TTTTTCTTAGATCCTTCTTC+AGG	-	chr8_4:15069934-15069953	None:intergenic	30.0%
	GAAGAAGGATCTAAGAAAAA+AGG	+	chr8_4:15069934-15069953	Msa1315590:CDS	30.0%
	GAAACTTGACAAGAAAAGTA+AGG	+	chr8_4:15070014-15070033	Msa1315590:CDS	30.0%
!	AAAGTTTCTGAGAAAAGACA+AGG	+	chr8_4:15070069-15070088	Msa1315590:CDS	30.0%
!	AAGCAAAAGAATCCATTTTC+TGG	+	chr8_4:15070138-15070157	Msa1315590:CDS	30.0%
	GTTATTAAAGGTCCAGAAAA+TGG	-	chr8_4:15070153-15070172	None:intergenic	30.0%
	AGTTAAGTAACCACATAAAG+AGG	-	chr8_4:15070273-15070292	None:intergenic	30.0%
!	ACTCTTTGTATCGTTTTCTA+TGG	+	chr8_4:15070290-15070309	Msa1315590:exon	30.0%
	AGTCCAAATACTAGCATATT+TGG	+	chr8_4:15070353-15070372	Msa1315590:three_prime_UTR	30.0%
!	TTTTCTTAAATTGTCACCGA+TGG	+	chr8_4:15070395-15070414	Msa1315590:three_prime_UTR	30.0%
	ATGATTTATGAAGCACAAAC+AGG	-	chr8_4:15070445-15070464	None:intergenic	30.0%
!	TAAGGTCTTTTCTATTGCAT+TGG	-	chr8_4:15070542-15070561	None:intergenic	30.0%
	CAAAATCATTCATCTCACTA+AGG	-	chr8_4:15070560-15070579	None:intergenic	30.0%
!	ATTATTCTTTTTGCCAGTTG+AGG	+	chr8_4:15068624-15068643	Msa1315590:intron	30.0%
	ATTAATGCACCTTCTTATTG+AGG	+	chr8_4:15068956-15068975	Msa1315590:intron	30.0%
	AAGAAATTGCCTCAATAAGA+AGG	-	chr8_4:15068968-15068987	None:intergenic	30.0%
	GAAAAGAAATCAATGTCACA+TGG	-	chr8_4:15069055-15069074	None:intergenic	30.0%
	TACTATGTGGATGTACAAAA+GGG	-	chr8_4:15069095-15069114	None:intergenic	30.0%
	TTACTATGTGGATGTACAAA+AGG	-	chr8_4:15069096-15069115	None:intergenic	30.0%
	AATGTCTCATCTCATTGTAA+TGG	-	chr8_4:15069170-15069189	None:intergenic	30.0%
!	ACATTGTTCTTTTGTGTAGA+TGG	+	chr8_4:15069185-15069204	Msa1315590:intron	30.0%
!	ATGAAGTTTGATAGTTCCTA+AGG	-	chr8_4:15069216-15069235	None:intergenic	30.0%
!	CTCTTGAAGTTTTCATATCT+TGG	+	chr8_4:15069239-15069258	Msa1315590:five_prime_UTR	30.0%
	AAACATAGTTACTGCATGTT+TGG	+	chr8_4:15069392-15069411	Msa1315590:intron	30.0%
!	TTTTCTTAGATCCTTCTTCA+GGG	-	chr8_4:15069933-15069952	None:intergenic	30.0%
!	TTTTTCTTAGATCCTTCTTC+AGG	-	chr8_4:15069934-15069953	None:intergenic	30.0%
	GAAGAAGGATCTAAGAAAAA+AGG	+	chr8_4:15069934-15069953	Msa1315590:CDS	30.0%
	GAAACTTGACAAGAAAAGTA+AGG	+	chr8_4:15070014-15070033	Msa1315590:CDS	30.0%
!	AAAGTTTCTGAGAAAAGACA+AGG	+	chr8_4:15070069-15070088	Msa1315590:CDS	30.0%
!	AAGCAAAAGAATCCATTTTC+TGG	+	chr8_4:15070138-15070157	Msa1315590:CDS	30.0%
	GTTATTAAAGGTCCAGAAAA+TGG	-	chr8_4:15070153-15070172	None:intergenic	30.0%
	AGTTAAGTAACCACATAAAG+AGG	-	chr8_4:15070273-15070292	None:intergenic	30.0%
!	ACTCTTTGTATCGTTTTCTA+TGG	+	chr8_4:15070290-15070309	Msa1315590:exon	30.0%
	AGTCCAAATACTAGCATATT+TGG	+	chr8_4:15070353-15070372	Msa1315590:three_prime_UTR	30.0%
!	TTTTCTTAAATTGTCACCGA+TGG	+	chr8_4:15070395-15070414	Msa1315590:three_prime_UTR	30.0%
	ATGATTTATGAAGCACAAAC+AGG	-	chr8_4:15070445-15070464	None:intergenic	30.0%
!	TAAGGTCTTTTCTATTGCAT+TGG	-	chr8_4:15070542-15070561	None:intergenic	30.0%
	CAAAATCATTCATCTCACTA+AGG	-	chr8_4:15070560-15070579	None:intergenic	30.0%
	TTTGTCGGTGGATATTATGT+AGG	+	chr8_4:15068719-15068738	Msa1315590:intron	35.0%
!	GAGGTTTGGAATTTACTATG+TGG	-	chr8_4:15069108-15069127	None:intergenic	35.0%
	GCAAATTAATACACGAGGTT+TGG	-	chr8_4:15069122-15069141	None:intergenic	35.0%
	TAGCAGCAAATTAATACACG+AGG	-	chr8_4:15069127-15069146	None:intergenic	35.0%
!!	CGTGTATTAATTTGCTGCTA+AGG	+	chr8_4:15069127-15069146	Msa1315590:intron	35.0%
	TGTGTAGATGGATAATCCTT+AGG	+	chr8_4:15069197-15069216	Msa1315590:intron	35.0%
!	GAATTTCTTTTCTCCTCAAG+TGG	+	chr8_4:15069261-15069280	Msa1315590:five_prime_UTR	35.0%
	ACAATTCTTCAACACAACCA+AGG	+	chr8_4:15069307-15069326	Msa1315590:CDS	35.0%
	TTACTGCATGTTTGGATTCA+CGG	+	chr8_4:15069400-15069419	Msa1315590:intron	35.0%
	AGTTTGAATAACGGTGAGTT+TGG	+	chr8_4:15069608-15069627	Msa1315590:intron	35.0%
	CGGTGAATTTGACATAATCA+GGG	-	chr8_4:15069705-15069724	None:intergenic	35.0%
	ACGGTGAATTTGACATAATC+AGG	-	chr8_4:15069706-15069725	None:intergenic	35.0%
	TTCGTGCATGTTTAGATTGA+CGG	-	chr8_4:15069725-15069744	None:intergenic	35.0%
	TGAGAAAGGGAAAGAAATCA+TGG	+	chr8_4:15069968-15069987	Msa1315590:CDS	35.0%
!!	TAAGTATTGGACCAGAAACA+TGG	-	chr8_4:15070095-15070114	None:intergenic	35.0%
	CCTTTGTAGGAGTTAAGTAT+TGG	-	chr8_4:15070108-15070127	None:intergenic	35.0%
	CCAATACTTAACTCCTACAA+AGG	+	chr8_4:15070105-15070124	Msa1315590:CDS	35.0%
	AACTCCTACAAAGGTTATGA+TGG	+	chr8_4:15070114-15070133	Msa1315590:CDS	35.0%
	ACTCCTACAAAGGTTATGAT+GGG	+	chr8_4:15070115-15070134	Msa1315590:CDS	35.0%
	TTCTCTTCTGATCTCTTTGT+TGG	-	chr8_4:15070189-15070208	None:intergenic	35.0%
!	TGTTGATGGAGAGTCATATA+AGG	-	chr8_4:15070219-15070238	None:intergenic	35.0%
!	GATGAGGACTATTTTGTTGA+TGG	-	chr8_4:15070233-15070252	None:intergenic	35.0%
	AAACTATGGTCCTCTTTATG+TGG	+	chr8_4:15070260-15070279	Msa1315590:CDS	35.0%
	TTTGTCGGTGGATATTATGT+AGG	+	chr8_4:15068719-15068738	Msa1315590:intron	35.0%
!	GAGGTTTGGAATTTACTATG+TGG	-	chr8_4:15069108-15069127	None:intergenic	35.0%
	GCAAATTAATACACGAGGTT+TGG	-	chr8_4:15069122-15069141	None:intergenic	35.0%
	TAGCAGCAAATTAATACACG+AGG	-	chr8_4:15069127-15069146	None:intergenic	35.0%
!!	CGTGTATTAATTTGCTGCTA+AGG	+	chr8_4:15069127-15069146	Msa1315590:intron	35.0%
	TGTGTAGATGGATAATCCTT+AGG	+	chr8_4:15069197-15069216	Msa1315590:intron	35.0%
!	GAATTTCTTTTCTCCTCAAG+TGG	+	chr8_4:15069261-15069280	Msa1315590:five_prime_UTR	35.0%
	ACAATTCTTCAACACAACCA+AGG	+	chr8_4:15069307-15069326	Msa1315590:CDS	35.0%
	TTACTGCATGTTTGGATTCA+CGG	+	chr8_4:15069400-15069419	Msa1315590:intron	35.0%
	AGTTTGAATAACGGTGAGTT+TGG	+	chr8_4:15069608-15069627	Msa1315590:intron	35.0%
	CGGTGAATTTGACATAATCA+GGG	-	chr8_4:15069705-15069724	None:intergenic	35.0%
	ACGGTGAATTTGACATAATC+AGG	-	chr8_4:15069706-15069725	None:intergenic	35.0%
	TTCGTGCATGTTTAGATTGA+CGG	-	chr8_4:15069725-15069744	None:intergenic	35.0%
	TGAGAAAGGGAAAGAAATCA+TGG	+	chr8_4:15069968-15069987	Msa1315590:CDS	35.0%
!!	TAAGTATTGGACCAGAAACA+TGG	-	chr8_4:15070095-15070114	None:intergenic	35.0%
	CCTTTGTAGGAGTTAAGTAT+TGG	-	chr8_4:15070108-15070127	None:intergenic	35.0%
	CCAATACTTAACTCCTACAA+AGG	+	chr8_4:15070105-15070124	Msa1315590:CDS	35.0%
	AACTCCTACAAAGGTTATGA+TGG	+	chr8_4:15070114-15070133	Msa1315590:CDS	35.0%
	ACTCCTACAAAGGTTATGAT+GGG	+	chr8_4:15070115-15070134	Msa1315590:CDS	35.0%
	TTCTCTTCTGATCTCTTTGT+TGG	-	chr8_4:15070189-15070208	None:intergenic	35.0%
!	TGTTGATGGAGAGTCATATA+AGG	-	chr8_4:15070219-15070238	None:intergenic	35.0%
!	GATGAGGACTATTTTGTTGA+TGG	-	chr8_4:15070233-15070252	None:intergenic	35.0%
	AAACTATGGTCCTCTTTATG+TGG	+	chr8_4:15070260-15070279	Msa1315590:CDS	35.0%
!	TTCTTTTTGCCAGTTGAGGT+TGG	+	chr8_4:15068628-15068647	Msa1315590:intron	40.0%
	TTGAGTTCAACTCTAGCTGT+CGG	+	chr8_4:15068687-15068706	Msa1315590:intron	40.0%
	GAAATCAATGTCACATGGAG+AGG	-	chr8_4:15069050-15069069	None:intergenic	40.0%
	CCATAGTCATCATAATGCCT+TGG	-	chr8_4:15069327-15069346	None:intergenic	40.0%
!	CCAAGGCATTATGATGACTA+TGG	+	chr8_4:15069324-15069343	Msa1315590:CDS	40.0%
	CTATGGATTTGATCTGCAAC+AGG	+	chr8_4:15069341-15069360	Msa1315590:CDS	40.0%
	GCAAAATCACAATAACACCG+TGG	+	chr8_4:15069630-15069649	Msa1315590:intron	40.0%
!!!	TTTTGGCTCTCACTAGTTTC+TGG	+	chr8_4:15069855-15069874	Msa1315590:intron	40.0%
	TTTCCCTTTCTCACTTTCTC+TGG	-	chr8_4:15069961-15069980	None:intergenic	40.0%
	GAAATCATGGAAAAGTTCCC+TGG	+	chr8_4:15069981-15070000	Msa1315590:CDS	40.0%
	AAGTTTCCACCATGAAACCA+GGG	-	chr8_4:15070001-15070020	None:intergenic	40.0%
	AAAAGACAAGGCCATGTTTC+TGG	+	chr8_4:15070081-15070100	Msa1315590:CDS	40.0%
	CTTCCCATCATAACCTTTGT+AGG	-	chr8_4:15070121-15070140	None:intergenic	40.0%
!!!	CCATAGTTTTGAACAGGATG+AGG	-	chr8_4:15070249-15070268	None:intergenic	40.0%
	CCTCATCCTGTTCAAAACTA+TGG	+	chr8_4:15070246-15070265	Msa1315590:CDS	40.0%
!!!	AGAGGACCATAGTTTTGAAC+AGG	-	chr8_4:15070255-15070274	None:intergenic	40.0%
	CCAACAATAGCACATACCAT+CGG	-	chr8_4:15070414-15070433	None:intergenic	40.0%
!	TTCTTTTTGCCAGTTGAGGT+TGG	+	chr8_4:15068628-15068647	Msa1315590:intron	40.0%
	TTGAGTTCAACTCTAGCTGT+CGG	+	chr8_4:15068687-15068706	Msa1315590:intron	40.0%
	GAAATCAATGTCACATGGAG+AGG	-	chr8_4:15069050-15069069	None:intergenic	40.0%
	CCATAGTCATCATAATGCCT+TGG	-	chr8_4:15069327-15069346	None:intergenic	40.0%
!	CCAAGGCATTATGATGACTA+TGG	+	chr8_4:15069324-15069343	Msa1315590:CDS	40.0%
	CTATGGATTTGATCTGCAAC+AGG	+	chr8_4:15069341-15069360	Msa1315590:CDS	40.0%
	GCAAAATCACAATAACACCG+TGG	+	chr8_4:15069630-15069649	Msa1315590:intron	40.0%
!!!	TTTTGGCTCTCACTAGTTTC+TGG	+	chr8_4:15069855-15069874	Msa1315590:intron	40.0%
	TTTCCCTTTCTCACTTTCTC+TGG	-	chr8_4:15069961-15069980	None:intergenic	40.0%
	GAAATCATGGAAAAGTTCCC+TGG	+	chr8_4:15069981-15070000	Msa1315590:CDS	40.0%
	AAGTTTCCACCATGAAACCA+GGG	-	chr8_4:15070001-15070020	None:intergenic	40.0%
	AAAAGACAAGGCCATGTTTC+TGG	+	chr8_4:15070081-15070100	Msa1315590:CDS	40.0%
	CTTCCCATCATAACCTTTGT+AGG	-	chr8_4:15070121-15070140	None:intergenic	40.0%
!!!	CCATAGTTTTGAACAGGATG+AGG	-	chr8_4:15070249-15070268	None:intergenic	40.0%
	CCTCATCCTGTTCAAAACTA+TGG	+	chr8_4:15070246-15070265	Msa1315590:CDS	40.0%
!!!	AGAGGACCATAGTTTTGAAC+AGG	-	chr8_4:15070255-15070274	None:intergenic	40.0%
	CCAACAATAGCACATACCAT+CGG	-	chr8_4:15070414-15070433	None:intergenic	40.0%
	AGAAATGCACCAACCTCAAC+TGG	-	chr8_4:15068640-15068659	None:intergenic	45.0%
	TGTCGGCATAGAGACTTTGT+CGG	+	chr8_4:15068704-15068723	Msa1315590:intron	45.0%
!	TTCTTTTCTCCTCAAGTGGC+TGG	+	chr8_4:15069265-15069284	Msa1315590:five_prime_UTR	45.0%
	CAACAAAAACCAGCCACTTG+AGG	-	chr8_4:15069277-15069296	None:intergenic	45.0%
!!	CTAGTTTCTGGCTGAAGCAA+AGG	+	chr8_4:15069867-15069886	Msa1315590:intron	45.0%
	TCAACAGTGTACCCTGAAGA+AGG	+	chr8_4:15069919-15069938	Msa1315590:CDS	45.0%
	AGGACCAGAGAAAGTGAGAA+AGG	+	chr8_4:15069954-15069973	Msa1315590:CDS	45.0%
	GGACCAGAGAAAGTGAGAAA+GGG	+	chr8_4:15069955-15069974	Msa1315590:CDS	45.0%
	GGAAAAGTTCCCTGGTTTCA+TGG	+	chr8_4:15069989-15070008	Msa1315590:CDS	45.0%
	AAAGTTCCCTGGTTTCATGG+TGG	+	chr8_4:15069992-15070011	Msa1315590:CDS	45.0%
	CAAGTTTCCACCATGAAACC+AGG	-	chr8_4:15070002-15070021	None:intergenic	45.0%
!	GCATCGACACTTCAGATTGA+AGG	+	chr8_4:15070314-15070333	Msa1315590:three_prime_UTR	45.0%
	CTTCAGATTGAAGGAGTCAG+TGG	+	chr8_4:15070323-15070342	Msa1315590:three_prime_UTR	45.0%
!	CCGATGGTATGTGCTATTGT+TGG	+	chr8_4:15070411-15070430	Msa1315590:three_prime_UTR	45.0%
	AGAAATGCACCAACCTCAAC+TGG	-	chr8_4:15068640-15068659	None:intergenic	45.0%
	TGTCGGCATAGAGACTTTGT+CGG	+	chr8_4:15068704-15068723	Msa1315590:intron	45.0%
!	TTCTTTTCTCCTCAAGTGGC+TGG	+	chr8_4:15069265-15069284	Msa1315590:five_prime_UTR	45.0%
	CAACAAAAACCAGCCACTTG+AGG	-	chr8_4:15069277-15069296	None:intergenic	45.0%
!!	CTAGTTTCTGGCTGAAGCAA+AGG	+	chr8_4:15069867-15069886	Msa1315590:intron	45.0%
	TCAACAGTGTACCCTGAAGA+AGG	+	chr8_4:15069919-15069938	Msa1315590:CDS	45.0%
	AGGACCAGAGAAAGTGAGAA+AGG	+	chr8_4:15069954-15069973	Msa1315590:CDS	45.0%
	GGACCAGAGAAAGTGAGAAA+GGG	+	chr8_4:15069955-15069974	Msa1315590:CDS	45.0%
	GGAAAAGTTCCCTGGTTTCA+TGG	+	chr8_4:15069989-15070008	Msa1315590:CDS	45.0%
	AAAGTTCCCTGGTTTCATGG+TGG	+	chr8_4:15069992-15070011	Msa1315590:CDS	45.0%
	CAAGTTTCCACCATGAAACC+AGG	-	chr8_4:15070002-15070021	None:intergenic	45.0%
!	GCATCGACACTTCAGATTGA+AGG	+	chr8_4:15070314-15070333	Msa1315590:three_prime_UTR	45.0%
	CTTCAGATTGAAGGAGTCAG+TGG	+	chr8_4:15070323-15070342	Msa1315590:three_prime_UTR	45.0%
!	CCGATGGTATGTGCTATTGT+TGG	+	chr8_4:15070411-15070430	Msa1315590:three_prime_UTR	45.0%
!	TCTGCAACAGGACTTTTCCC+TGG	+	chr8_4:15069353-15069372	Msa1315590:CDS	50.0%
!	TCTGCAACAGGACTTTTCCC+TGG	+	chr8_4:15069353-15069372	Msa1315590:CDS	50.0%
	CGGCATAGAGACTTTGTCGG+TGG	+	chr8_4:15068707-15068726	Msa1315590:intron	55.0%
	CTGGCTGAAGCAAAGGAGCA+TGG	+	chr8_4:15069874-15069893	Msa1315590:CDS	55.0%
	CGGCATAGAGACTTTGTCGG+TGG	+	chr8_4:15068707-15068726	Msa1315590:intron	55.0%
	CTGGCTGAAGCAAAGGAGCA+TGG	+	chr8_4:15069874-15069893	Msa1315590:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	15068480	15070617	15068480	ID=Msa1315590;Name=Msa1315590
chr8_4	mRNA	15068480	15070617	15068480	ID=Msa1315590-mRNA-1;Parent=Msa1315590;Name=Msa1315590-mRNA-1;_AED=0.17;_eAED=0.17;_QI=181\|1\|1\|1\|0.5\|0.33\|3\|327\|164
chr8_4	exon	15068480	15068564	15068480	ID=Msa1315590-mRNA-1:exon:5703;Parent=Msa1315590-mRNA-1
chr8_4	exon	15069204	15069374	15069204	ID=Msa1315590-mRNA-1:exon:5704;Parent=Msa1315590-mRNA-1
chr8_4	exon	15069871	15070617	15069871	ID=Msa1315590-mRNA-1:exon:5705;Parent=Msa1315590-mRNA-1
chr8_4	five_prime_UTR	15068480	15068564	15068480	ID=Msa1315590-mRNA-1:five_prime_utr;Parent=Msa1315590-mRNA-1
chr8_4	five_prime_UTR	15069204	15069299	15069204	ID=Msa1315590-mRNA-1:five_prime_utr;Parent=Msa1315590-mRNA-1
chr8_4	CDS	15069300	15069374	15069300	ID=Msa1315590-mRNA-1:cds;Parent=Msa1315590-mRNA-1
chr8_4	CDS	15069871	15070290	15069871	ID=Msa1315590-mRNA-1:cds;Parent=Msa1315590-mRNA-1
chr8_4	three_prime_UTR	15070291	15070617	15070291	ID=Msa1315590-mRNA-1:three_prime_utr;Parent=Msa1315590-mRNA-1

Gene Sequence

>Msa1315590

ATGATGAACAATTCTTCAACACAACCAAGGCATTATGATGACTATGGATTTGATCTGCAACAGGACTTTTCCCTGTTTCTGGCTGAAGCAAAGGAGCATGGACATGAATCAAAACTGAAGAGTTCAACAGTGTACCCTGAAGAAGGATCTAAGAAAAAAGGACCAGAGAAAGTGAGAAAGGGAAAGAAATCATGGAAAAGTTCCCTGGTTTCATGGTGGAAACTTGACAAGAAAAGTAAGGATAAAGAAGAAACCAATAACAAATCTATAGCTAAAGTTTCTGAGAAAAGACAAGGCCATGTTTCTGGTCCAATACTTAACTCCTACAAAGGTTATGATGGGAAGCAAAAGAATCCATTTTCTGGACCTTTAATAACAAGTTTGTTTAAACCAACAAAGAGATCAGAAGAGAATGAGATACCTTATATGACTCTCCATCAACAAAATAGTCCTCATCCTGTTCAAAACTATGGTCCTCTTTATGTGGTTACTTAA

Protein sequence

>Msa1315590

MMNNSSTQPRHYDDYGFDLQQDFSLFLAEAKEHGHESKLKSSTVYPEEGSKKKGPEKVRKGKKSWKSSLVSWWKLDKKSKDKEETNNKSIAKVSEKRQGHVSGPILNSYKGYDGKQKNPFSGPLITSLFKPTKRSEENEIPYMTLHQQNSPHPVQNYGPLYVVT*