AlfalfaGEDB | Msa1042480

M. sativa cultivar zhongmu-4 / Msa1042480

KEGG: K12741
GO: GO:0000122 GO:0001101 GO:0001837 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005737 GO:0005829 GO:0005849 GO:0006139 GO:0006355 GO:0006357 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048762 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0060255 GO:0060485 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090575 GO:0090693 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902369 GO:1902373 GO:1902679 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:1903508 GO:1990904 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042480	XP_003624837.2	97.143	490	14	0	1	490	1	490	0.0	966

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042480	sp\|O80678\|UBA2B_ARATH	52.988	502	169	13	1	489	1	448	2.05e-149	437

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042480	Q2HUH7	97.143	490	14	0	1	490	1	490	0.0	966

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012940	Msa1042480	0.810457	1.141948e-50	-8.615850e-47
Msa0029630	Msa1042480	0.807857	4.117655e-50	-8.615850e-47
Msa0033880	Msa1042480	0.814885	1.226616e-51	-8.615850e-47
Msa0041690	Msa1042480	0.819705	1.009394e-52	-8.615850e-47
Msa0074750	Msa1042480	0.821316	4.308410e-53	-8.615850e-47
Msa0093010	Msa1042480	0.825614	4.257615e-54	-8.615850e-47
Msa0103790	Msa1042480	0.810792	9.665765e-51	-8.615850e-47
Msa0106710	Msa1042480	0.803948	2.732117e-49	-8.615850e-47
Msa0119900	Msa1042480	0.829720	4.395309e-55	-8.615850e-47
Msa0125450	Msa1042480	0.805467	1.316448e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042480	MtrunA17_Chr7g0255011	97.143	490	14	0	1	490	1	490	0.0	966
Msa1042480	MtrunA17_Chr5g0440831	53.140	414	143	11	85	489	123	494	8.03e-109	332
Msa1042480	MtrunA17_Chr8g0360551	44.727	275	138	4	87	358	33	296	4.33e-63	211
Msa1042480	MtrunA17_Chr4g0045921	40.476	252	132	2	79	330	30	263	2.09e-62	207
Msa1042480	MtrunA17_Chr3g0144311	40.816	98	58	0	122	219	24	121	2.58e-18	85.1
Msa1042480	MtrunA17_Chr7g0276531	44.048	84	47	0	122	205	13	96	1.92e-17	82.0
Msa1042480	MtrunA17_Chr3g0127751	44.444	81	45	0	122	202	21	101	1.84e-16	79.0
Msa1042480	MtrunA17_Chr5g0426311	40.964	83	49	0	122	204	11	93	3.23e-16	79.0
Msa1042480	MtrunA17_Chr4g0017401	41.667	84	49	0	122	205	11	94	5.99e-16	77.8
Msa1042480	MtrunA17_Chr8g0346011	42.169	83	48	0	123	205	33	115	1.86e-15	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1042480	AT2G41060.1	52.988	502	169	13	1	489	1	448	2.08e-150	437
Msa1042480	AT2G41060.3	52.988	502	169	13	1	489	1	448	2.08e-150	437
Msa1042480	AT2G41060.2	52.988	502	169	13	1	489	1	448	2.08e-150	437
Msa1042480	AT3G56860.9	59.189	419	126	10	78	489	91	471	1.76e-146	428
Msa1042480	AT3G56860.11	59.189	419	126	10	78	489	91	471	1.76e-146	428
Msa1042480	AT3G56860.8	59.189	419	126	10	78	489	91	471	1.76e-146	428
Msa1042480	AT3G56860.5	59.189	419	126	10	78	489	91	471	1.76e-146	428
Msa1042480	AT3G56860.7	59.189	419	126	10	78	489	91	471	1.76e-146	428
Msa1042480	AT3G56860.2	59.189	419	126	10	78	489	91	471	1.76e-146	428
Msa1042480	AT3G56860.6	59.189	419	126	10	78	489	91	471	1.76e-146	428

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Find 179 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTTGTTCATGGTCT+GGG	0.437456	7_1:-80429720	Msa1042480:CDS
AACCACCCTGTCCAAGCTGC+TGG	0.478162	7_1:+80428692	None:intergenic
AACCAGCAGCTTGGACAGGG+TGG	0.658678	7_1:-80428694	Msa1042480:CDS
AACCTCTTCGTATTCTTCGC+CGG	0.474451	7_1:+80429983	None:intergenic
AACTCCGGTGGTTGCAGCGG+CGG	0.502632	7_1:-80429475	Msa1042480:CDS
AACTGCGTCCTCTGACTCAA+TGG	0.452172	7_1:+80429096	None:intergenic
AAGATTTATATTAGTAATGT+TGG	0.368173	7_1:-80429411	Msa1042480:CDS
AAGGAGCCGCAGAAGAAGAT+TGG	0.406787	7_1:-80429546	Msa1042480:CDS
AAGGTGACGGGGAAGCCGAA+AGG	0.589222	7_1:-80429309	Msa1042480:CDS
AAGGTTTCAGGGAAATCTAA+GGG	0.574831	7_1:-80429618	Msa1042480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATAGGAAAATCTTTGTTCA+TGG	-	chr7_1:80429026-80429045	Msa1042480:CDS	30.0%
AAAATCTTTGTTCATGGTCT+GGG	-	chr7_1:80429032-80429051	Msa1042480:CDS	30.0%
ACAAACAAACAAAACCCTTT+CGG	+	chr7_1:80429461-80429480	None:intergenic	30.0%
GATAATGTTGGATTTATTGG+TGG	-	chr7_1:80429689-80429708	Msa1042480:CDS	30.0%
CATAGGAAAATCTTTGTTCA+TGG	-	chr7_1:80429026-80429045	Msa1042480:CDS	30.0%
AAAATCTTTGTTCATGGTCT+GGG	-	chr7_1:80429032-80429051	Msa1042480:CDS	30.0%
ACAAACAAACAAAACCCTTT+CGG	+	chr7_1:80429461-80429480	None:intergenic	30.0%
GATAATGTTGGATTTATTGG+TGG	-	chr7_1:80429689-80429708	Msa1042480:CDS	30.0%
TGAATACGAAGAAGTTGAAG+AGG	-	chr7_1:80428803-80428822	Msa1042480:CDS	35.0%
GAAAATCTTTGTTCATGGTC+TGG	-	chr7_1:80429031-80429050	Msa1042480:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	80428651	80430123	80428651	ID=Msa1042480;Name=Msa1042480
chr7_1	mRNA	80428651	80430123	80428651	ID=Msa1042480-mRNA-1;Parent=Msa1042480;Name=Msa1042480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|490
chr7_1	exon	80428651	80430123	80428651	ID=Msa1042480-mRNA-1:exon:21951;Parent=Msa1042480-mRNA-1
chr7_1	CDS	80428651	80430123	80428651	ID=Msa1042480-mRNA-1:cds;Parent=Msa1042480-mRNA-1

Gene Sequence

>Msa1042480

ATGGTGAGAAAGAGAAAACTCGTCAAAGCTTCTCAACAAGAAGAACCACCGCTCAAACAACATCAACCGGAGCCTAAACCGGAGCCGGTACCCGAACCCGAACCGGAACCATACATCCCCGGCGAAGAATACGAAGAGGTTGAAGAAGAAGTTGAATACGAAGAAGTTGAAGAGGAAGTAGAGGAGGAGGAAGAGGAGGAAGAAGAGGAGGAAGAAGAAGAACAACAAATTCAAGTAGAAGAAGACGATGAACCGATCCAGAAGCTTCTAGAACCTTTCACAAAAGAACAGATCTCGAGTCTTCTTTGCGAAGCGGCTTCGAAGCATCGTGATGTTGCGGATCGGATTCGGAAGATTGCTGATGGTGATGCTTCCCATAGGAAAATCTTTGTTCATGGTCTGGGATGGGATACTACTTCAGCGACGCTGATTAACGCGTTTTCGCAGTACGGTGAAATTGAGGATTGTAAAGCTGTTACGGATAAGGTTTCAGGGAAATCTAAGGGTTATGGATTTATTTTGTTTAAGAGAAGGAGTGGAGCCAGGAATGCGTTGAAGGAGCCGCAGAAGAAGATTGGGAATAGGATGACGGCGTGTCAGCTGGCGTCTATTGGACCGGTGCAGCAAACTCCGGTGGTTGCAGCGGCGGTGGCGCCGTTGGTGGTGCCGGGTTCGGAGTATACGCAGAGGAAGATTTATATTAGTAATGTTGGAGCTGATTTGGATGCACAGAAGCTGTTTGGTTTTTTTTCGAGATTTGGAGAGATTGAGGAAGGGCCGTTAGGGCTTGATAAGGTGACGGGGAAGCCGAAAGGGTTTTGTTTGTTTGTGTATAAGAGTGCTGAGAGTGCGAGAAGGGCGTTGGAGGAGCCTCATAAGGAGTTTGAAGGGCATATTTTGCATTGTCAAAAGGCGATCGATGGTCCTAAGCCAACGAAGATGCAACATCAGCCACAGCAGCAGCAGCAACATGTGAATTCGGTGAATCATTTGAACCAATTGAATCCATTGAGTCAGAGGACGCAGTTTCAGAGACATGATAATGTTGGATTTATTGGTGGAAGTAGTGCTGCAGTTAGCCAACCAGGGCACTTAATGGCACCGGCAGGACCAGTAGCCGGGTACAATCAGGCGGCTGCTAGTGCTTCGGCTGCACAGGGGCTGAACCCTGTGCTGACTCCTGCACTTGGACAGGCGCTGACGGCGTTGCTTGCTTCTCAGGGTGCTACGTTGGGGCTGGGTAATTTACTGGGGAGTCTTGGAGCAAGTAGTGCGGTTACTCCTGGTGTTCCTGCTGCTGGTCATGGAGTTCAGAGTGGATACAGTGCTCAGCCTACCATAAGTCCAACCGTAATGGGAGCATATGGGAATGCTGTACCACAGGCTGGATTGCAGGTGCTATATCCGAACCAGCAGCTTGGACAGGGTGGTTCTGGAAGAGGGCAATATGGTGGAGCCGCACCTTATCATTAG

Protein sequence

>Msa1042480

MVRKRKLVKASQQEEPPLKQHQPEPKPEPVPEPEPEPYIPGEEYEEVEEEVEYEEVEEEVEEEEEEEEEEEEEEQQIQVEEDDEPIQKLLEPFTKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAVAPLVVPGSEYTQRKIYISNVGADLDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAIDGPKPTKMQHQPQQQQQHVNSVNHLNQLNPLSQRTQFQRHDNVGFIGGSSAAVSQPGHLMAPAGPVAGYNQAAASASAAQGLNPVLTPALGQALTALLASQGATLGLGNLLGSLGASSAVTPGVPAAGHGVQSGYSAQPTISPTVMGAYGNAVPQAGLQVLYPNQQLGQGGSGRGQYGGAAPYH*