AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1400820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400820 MtrunA17_Chr4g0043341 99.235 392 1 1 1 392 1 390 0.0 778
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400820 AT1G30480.1 71.000 400 94 7 1 391 1 387 3.03e-173 489

Find 189 sgRNAs with CRISPR-Local

Find 501 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCGTCAGTGGGAAAATT+TGG 0.205950 tig0022477:+20268 None:intergenic
CATAGATGTTCTGTTCTTCT+AGG 0.206516 tig0022477:+20078 None:intergenic
ACCTTGATGGTCGATACTTT+GGG 0.229758 tig0022477:-20189 Msa1400820:CDS
GATTCGAGATTGAATATTTC+CGG 0.238391 tig0022477:-24720 Msa1400820:CDS
AAAGAGAAGAGGAGGGTTTA+CGG 0.245741 tig0022477:+25099 None:intergenic
GTGCACGGTGTTTAAGATTA+AGG 0.267823 tig0022477:+25257 None:intergenic
GGGTTGGGAGTTGGTGCTGG+TGG 0.281207 tig0022477:-24567 Msa1400820:CDS
TAGAGATAGGGAGAGAGATC+AGG 0.283507 tig0022477:-24745 Msa1400820:CDS
TCCAAGTGATCATAATATTA+AGG 0.298075 tig0022477:+19834 None:intergenic
AAAGGGAGAGAGATAGAGAT+AGG 0.316661 tig0022477:-24758 Msa1400820:CDS
AGGGCAAGGGCTTGGGAAAC+AGG 0.324519 tig0022477:-24496 Msa1400820:CDS
GAAATGTTGGGTGGGTTATA+CGG 0.325122 tig0022477:-25209 Msa1400820:CDS
TTACATGATAGTTGAGCATT+TGG 0.335357 tig0022477:-19991 Msa1400820:three_prime_UTR
AAAGCGCTTGTTGACCTTGA+TGG 0.335789 tig0022477:-20202 Msa1400820:CDS
GGGATGAGTGGAGGAGGTGG+TGG 0.342619 tig0022477:-24672 Msa1400820:CDS
TTACGCTGAAGACTTGAAAT+TGG 0.343434 tig0022477:-20030 Msa1400820:three_prime_UTR
AGTGGAGGAGGTGGTGGCAG+TGG 0.346253 tig0022477:-24666 Msa1400820:CDS
GCTGGAGAGACGGAGGGAGG+AGG 0.352148 tig0022477:-24823 Msa1400820:CDS
TGGAAACAAGGGCAAGGGCT+TGG 0.353102 tig0022477:-24504 Msa1400820:CDS
GTGTGGATGGATTTAGTATT+GGG 0.354043 tig0022477:-24605 Msa1400820:CDS
AGGTGGTGGCAGTGGTGGAC+GGG 0.357365 tig0022477:-24658 Msa1400820:CDS
GAGACGGAGGGAGGAGGAGG+AGG 0.361571 tig0022477:-24817 Msa1400820:CDS
GTTGGGTTGGGAGTTGGTGC+TGG 0.362932 tig0022477:-24570 Msa1400820:CDS
GGATCAGAATGTGCCAAGTA+TGG 0.369716 tig0022477:-20328 Msa1400820:CDS
AAACACATTTAGACCAAGAT+TGG 0.370541 tig0022477:+19963 None:intergenic
TCGGGTTACTGTTCCATACT+TGG 0.373407 tig0022477:+20315 None:intergenic
GTGACTAAGGGTTGTTGCTT+AGG 0.376265 tig0022477:-19934 Msa1400820:three_prime_UTR
CCATCTCAACCGGCTCTTGT+AGG 0.379713 tig0022477:-24954 Msa1400820:CDS
GGTGGTTGGTTTATCTTCTT+CGG 0.381468 tig0022477:+25163 None:intergenic
GGAAACAAGGGCAAGGGCTT+GGG 0.385410 tig0022477:-24503 Msa1400820:CDS
AAGTCGGAGACGGTTGGGTT+GGG 0.388880 tig0022477:-24582 Msa1400820:CDS
GAGACGGTTGGGTTGGGAGT+TGG 0.391170 tig0022477:-24576 Msa1400820:CDS
TGCAGGAGAGAGAATAGTTT+TGG 0.395509 tig0022477:+25019 None:intergenic
CGTCGGAGCTTCGAAATGTT+GGG 0.397633 tig0022477:-25221 Msa1400820:exon
GGAGAGACGGAGGGAGGAGG+AGG 0.406799 tig0022477:-24820 Msa1400820:CDS
AGAGGGAGAGAGAAAGAGAA+AGG 0.407620 tig0022477:-24776 Msa1400820:CDS
GAGGGTTTACGGAGAGTGGC+GGG 0.412268 tig0022477:+25110 None:intergenic
AGAGATAGGGAGAGAGATCA+GGG 0.413669 tig0022477:-24744 Msa1400820:CDS
AGGAGGAGAGGGAGAAAGAG+AGG 0.415770 tig0022477:-24800 Msa1400820:CDS
GACCTTGATGGTCGATACTT+TGG 0.416405 tig0022477:-20190 Msa1400820:CDS
GGGTTTACGGAGAGTGGCGG+GGG 0.417810 tig0022477:+25112 None:intergenic
GGTTGGGAGTTGGTGCTGGT+GGG 0.423146 tig0022477:-24566 Msa1400820:CDS
TGTGTTTGTAACAGTGACTA+AGG 0.423184 tig0022477:-19947 Msa1400820:three_prime_UTR
GCATTTGGTTAAGCCAATCT+TGG 0.426112 tig0022477:-19976 Msa1400820:three_prime_UTR
AGAGGGAGAAAGAGAGGGAG+AGG 0.428031 tig0022477:-24794 Msa1400820:CDS
GAGGTGGTGGCAGTGGTGGA+CGG 0.428340 tig0022477:-24659 Msa1400820:CDS
GGAGGAGGTGGTGGCAGTGG+TGG 0.430765 tig0022477:-24663 Msa1400820:CDS
CCGAGGTCGCCATCGCCTCC+CGG 0.432302 tig0022477:-24630 Msa1400820:CDS
CTGGTCATCCAGCACCAAAA+TGG 0.435428 tig0022477:-25135 Msa1400820:CDS
GTGGGGATGAGTGGAGGAGG+TGG 0.437454 tig0022477:-24675 Msa1400820:CDS
AGGGTTTACGGAGAGTGGCG+GGG 0.445201 tig0022477:+25111 None:intergenic
GCGTCGGAGCTTCGAAATGT+TGG 0.445615 tig0022477:-25222 Msa1400820:exon
GCAAGAATCGGCTGTGGTGC+AGG 0.448000 tig0022477:+25002 None:intergenic
GAGGGAGAGAGAAAGAGAAA+GGG 0.448011 tig0022477:-24775 Msa1400820:CDS
GGAGGGTTTACGGAGAGTGG+CGG 0.449146 tig0022477:+25109 None:intergenic
GAGGGAGAAAGAGAGGGAGA+GGG 0.449585 tig0022477:-24793 Msa1400820:CDS
TCGCCTCCCGGGAGTGTGGA+TGG 0.452371 tig0022477:-24618 Msa1400820:CDS
GGTGGTGGCAGTGGTGGACG+GGG 0.454602 tig0022477:-24657 Msa1400820:CDS
TTTGGGATCGAAGAAGGGTA+TGG 0.455058 tig0022477:+25066 None:intergenic
CTTATCAGACTTACTGTCAC+TGG 0.458476 tig0022477:+24407 None:intergenic
TCAGAGGATGATGGCAAAGA+TGG 0.461946 tig0022477:-24529 Msa1400820:CDS
GAAGTCGGAGACGGTTGGGT+TGG 0.461972 tig0022477:-24583 Msa1400820:CDS
TTGGGATCGAAGAAGGGTAT+GGG 0.461993 tig0022477:+25067 None:intergenic
CGATACTCTTCATAATCATT+CGG 0.462326 tig0022477:+24891 None:intergenic
AGGGATTACAACTCCGTTGA+TGG 0.463810 tig0022477:-24469 Msa1400820:CDS
AGTGGCGACAGCTTATTTGA+TGG 0.465959 tig0022477:+19801 None:intergenic
GGAGGAGAGGGAGAAAGAGA+GGG 0.470610 tig0022477:-24799 Msa1400820:CDS
CCAGGAATTTCTCCTGGCAT+TGG 0.472680 tig0022477:+20106 None:intergenic
AAGGGAGAGAGATAGAGATA+GGG 0.473212 tig0022477:-24757 Msa1400820:CDS
AGTGTGGATGGATTTAGTAT+TGG 0.474626 tig0022477:-24606 Msa1400820:CDS
TTGGGAAGTCGGAGACGGTT+GGG 0.475282 tig0022477:-24587 Msa1400820:CDS
TTATCTTCTTCGGCGGAAGA+AGG 0.476621 tig0022477:+25173 None:intergenic
GTTAAGAGTGTTAACATCAA+TGG 0.478275 tig0022477:-24381 Msa1400820:CDS
TCATAATCATTCGGCCTCGC+CGG 0.479312 tig0022477:+24900 None:intergenic
AGGCGTGTGGGGATGAGTGG+AGG 0.481563 tig0022477:-24681 Msa1400820:CDS
AGATGATGAGCTGGAAGATG+AGG 0.483402 tig0022477:-20353 Msa1400820:CDS
AGCGGAGATGATGAGGGAGC+TGG 0.486726 tig0022477:-24841 Msa1400820:CDS
TGTTGTTCAACCATCTCAAC+CGG 0.489564 tig0022477:-24964 Msa1400820:CDS
CCAATGCCAGGAGAAATTCC+TGG 0.492382 tig0022477:-20106 Msa1400820:CDS
GCAAAGATGGGGTGGAAACA+AGG 0.492416 tig0022477:-24516 Msa1400820:CDS
TGGCGACATTAGTGCAAGTA+AGG 0.493991 tig0022477:+19882 None:intergenic
AGTATCGGAGGGAGAAGAAG+AGG 0.498642 tig0022477:-24875 Msa1400820:CDS
TCCTTAATATTATGATCACT+TGG 0.499494 tig0022477:-19835 Msa1400820:three_prime_UTR
AAGAAAACCGATAGACGGGC+TGG 0.499615 tig0022477:-24444 Msa1400820:CDS
CTGTTCTTCTAGGTGAAGCC+AGG 0.500844 tig0022477:+20088 None:intergenic
TGGATTTAGTATTGGGAAGT+CGG 0.501213 tig0022477:-24598 Msa1400820:CDS
ACTAAATCCATCCACACTCC+CGG 0.501604 tig0022477:+24611 None:intergenic
CGAGGTCGCCATCGCCTCCC+GGG 0.503095 tig0022477:-24629 Msa1400820:CDS
AGAAGGCGTGTGGGGATGAG+TGG 0.504360 tig0022477:-24684 Msa1400820:CDS
CGTGTGGGGATGAGTGGAGG+AGG 0.505316 tig0022477:-24678 Msa1400820:CDS
AAACCTCTCCTCGACGAAGA+AGG 0.507996 tig0022477:-25366 Msa1400820:five_prime_UTR
AGGTGTGTAAAGAGAAGAGG+AGG 0.508512 tig0022477:+25091 None:intergenic
TCCACACTCCCGGGAGGCGA+TGG 0.508661 tig0022477:+24621 None:intergenic
ATAAACCAACCACCAATGTC+TGG 0.508799 tig0022477:-25154 Msa1400820:CDS
ATTCTTACTGCTTCGTCAGT+GGG 0.509933 tig0022477:+20259 None:intergenic
CCTTGATGGTCGATACTTTG+GGG 0.511583 tig0022477:-20188 Msa1400820:CDS
AACCTCTCCTCGACGAAGAA+GGG 0.517009 tig0022477:-25365 Msa1400820:five_prime_UTR
GGGAGGTGTGTAAAGAGAAG+AGG 0.523982 tig0022477:+25088 None:intergenic
TTCCCTTCTTCGTCGAGGAG+AGG 0.525736 tig0022477:+25363 None:intergenic
ACACTATTTCCTACCGCTAT+CGG 0.528221 tig0022477:+25313 None:intergenic
GGCGAAGAAAACCGATAGAC+GGG 0.530747 tig0022477:-24448 Msa1400820:CDS
AGAAAACCGATAGACGGGCT+GGG 0.532383 tig0022477:-24443 Msa1400820:CDS
ACTTGATCTTAAACTAGTTG+AGG 0.535933 tig0022477:-19781 Msa1400820:three_prime_UTR
ATTGGGAAGTCGGAGACGGT+TGG 0.535983 tig0022477:-24588 Msa1400820:CDS
CCTTCTCCATGCTTCCTCAC+CGG 0.541141 tig0022477:+24701 None:intergenic
CCTACAAGAGCCGGTTGAGA+TGG 0.541220 tig0022477:+24954 None:intergenic
CAGAGGATGATGGCAAAGAT+GGG 0.541874 tig0022477:-24528 Msa1400820:CDS
CTAGAGAAGCGGAGATGATG+AGG 0.544920 tig0022477:-24848 Msa1400820:CDS
GGAGCTGGAGAGACGGAGGG+AGG 0.547480 tig0022477:-24826 Msa1400820:CDS
TCGAGTGGCGAAGCAAGAAT+CGG 0.548486 tig0022477:+24990 None:intergenic
CTAAATCCATCCACACTCCC+GGG 0.550046 tig0022477:+24612 None:intergenic
AGAGGAGGGTTTACGGAGAG+TGG 0.550048 tig0022477:+25106 None:intergenic
ATATTTCCGGTGAGGAAGCA+TGG 0.550675 tig0022477:-24707 Msa1400820:CDS
CCGGGAGGCGATGGCGACCT+CGG 0.552926 tig0022477:+24630 None:intergenic
GTGAAGCCAGGAATTTCTCC+TGG 0.553408 tig0022477:+20100 None:intergenic
AATGAGTTAGCTCCAATGCC+AGG 0.554584 tig0022477:-20118 Msa1400820:CDS
AGCTCATCATCTACCTCACC+AGG 0.554865 tig0022477:+20364 None:intergenic
AGGAGTACAGTCGACGGTGA+TGG 0.554947 tig0022477:-24934 Msa1400820:CDS
TTATCTCAAATATCAGAACT+CGG 0.555140 tig0022477:+20296 None:intergenic
CGGAGCTTCGAAATGTTGGG+TGG 0.555447 tig0022477:-25218 Msa1400820:exon
CGAATGATTATGAAGAGTAT+CGG 0.556395 tig0022477:-24890 Msa1400820:CDS
GTTTCTAAGTAGCAGTACTC+TGG 0.558301 tig0022477:+24350 None:intergenic
GCACGTTTCTGTGTTTGCGT+CGG 0.562456 tig0022477:-25238 Msa1400820:five_prime_UTR
GACTGCTGCTCAGAGGATGA+TGG 0.563308 tig0022477:-24538 Msa1400820:CDS
TGATGAGGGAGCTGGAGAGA+CGG 0.563970 tig0022477:-24833 Msa1400820:CDS
TCTTCTTCGGCGGAAGAAGG+TGG 0.565773 tig0022477:+25176 None:intergenic
GCCATCGCCTCCCGGGAGTG+TGG 0.566180 tig0022477:-24622 Msa1400820:CDS
GAAAACCGATAGACGGGCTG+GGG 0.568144 tig0022477:-24442 Msa1400820:CDS
GGGCTTGGGAAACAGGAGCA+AGG 0.568284 tig0022477:-24489 Msa1400820:CDS
TTTGAAGGTGGGGCCTGGTG+AGG 0.568793 tig0022477:-20377 Msa1400820:intron
TGGGATCGAAGAAGGGTATG+GGG 0.568994 tig0022477:+25068 None:intergenic
CCGGTGAGGAAGCATGGAGA+AGG 0.570595 tig0022477:-24701 Msa1400820:CDS
GACTGTACTCCTACAAGAGC+CGG 0.571332 tig0022477:+24945 None:intergenic
GATGACCAGACATTGGTGGT+TGG 0.571359 tig0022477:+25149 None:intergenic
GATTCTTACTGCTTCGTCAG+TGG 0.572897 tig0022477:+20258 None:intergenic
TGGTGAGGTAGATGATGAGC+TGG 0.574351 tig0022477:-20362 Msa1400820:CDS
GTGGTGGACGGGGTGTGCCG+AGG 0.576445 tig0022477:-24647 Msa1400820:CDS
GGCTTGGGAAACAGGAGCAA+GGG 0.578046 tig0022477:-24488 Msa1400820:CDS
TCAACTAGTTTAAGATCAAG+TGG 0.580150 tig0022477:+19783 None:intergenic
AATAACCCCAGCCCGTCTAT+CGG 0.581849 tig0022477:+24437 None:intergenic
GAAGAGGAAGGCTAGAGAAG+CGG 0.582413 tig0022477:-24859 Msa1400820:CDS
CAAAGATGGGGTGGAAACAA+GGG 0.583228 tig0022477:-24515 Msa1400820:CDS
GGTGCTGGATGACCAGACAT+TGG 0.585477 tig0022477:+25142 None:intergenic
TAGTATTGGGAAGTCGGAGA+CGG 0.588760 tig0022477:-24592 Msa1400820:CDS
GAGGGAGCTGGAGAGACGGA+GGG 0.591156 tig0022477:-24829 Msa1400820:CDS
CGGCGGAAGAAGGTGGAGGT+AGG 0.591410 tig0022477:+25183 None:intergenic
GAAGCATGGAGAAGGCGTGT+GGG 0.595489 tig0022477:-24693 Msa1400820:CDS
TGAGGGAGCTGGAGAGACGG+AGG 0.596141 tig0022477:-24830 Msa1400820:CDS
CTTGTCCTCGTCGTAAAATG+TGG 0.599106 tig0022477:+20150 None:intergenic
GGAAGCATGGAGAAGGCGTG+TGG 0.600681 tig0022477:-24694 Msa1400820:CDS
GGATGATGGCAAAGATGGGG+TGG 0.606439 tig0022477:-24524 Msa1400820:CDS
CTAAGTAGCAGTACTCTGGT+AGG 0.610209 tig0022477:+24354 None:intergenic
CCCCAAAGTATCGACCATCA+AGG 0.612071 tig0022477:+20188 None:intergenic
TATCTCAAATATCAGAACTC+GGG 0.612442 tig0022477:+20297 None:intergenic
ATGGGGTGGAAACAAGGGCA+AGG 0.615661 tig0022477:-24510 Msa1400820:CDS
GGTGATGGAGGAGTACGATC+CGG 0.617347 tig0022477:-24919 Msa1400820:CDS
TGATTATGAAGAGTATCGGA+GGG 0.618046 tig0022477:-24886 Msa1400820:CDS
TGGCGAAGAAAACCGATAGA+CGG 0.618277 tig0022477:-24449 Msa1400820:CDS
ATGATTATGAAGAGTATCGG+AGG 0.619320 tig0022477:-24887 Msa1400820:CDS
GCTGGATGACCAGACATTGG+TGG 0.620237 tig0022477:+25145 None:intergenic
TAGAGAAGCGGAGATGATGA+GGG 0.620276 tig0022477:-24847 Msa1400820:CDS
GGCGAAGCAAGAATCGGCTG+TGG 0.620433 tig0022477:+24996 None:intergenic
GGAGCTTCGAAATGTTGGGT+GGG 0.623106 tig0022477:-25217 Msa1400820:exon
TCGATTTCCCTTCTTCGTCG+AGG 0.629153 tig0022477:+25358 None:intergenic
AGTACAGTCGACGGTGATGG+AGG 0.633085 tig0022477:-24931 Msa1400820:CDS
TCGGAGGGAGAAGAAGAGGA+AGG 0.634469 tig0022477:-24871 Msa1400820:CDS
TCTTCGGCGGAAGAAGGTGG+AGG 0.634823 tig0022477:+25179 None:intergenic
AAGCATGGAGAAGGCGTGTG+GGG 0.635401 tig0022477:-24692 Msa1400820:CDS
GATGAGCTGGAAGATGAGGT+AGG 0.638199 tig0022477:-20349 Msa1400820:CDS
CGCAAACACAGAAACGTGCA+CGG 0.639413 tig0022477:+25242 None:intergenic
GGCAGATGACTGCTGCTCAG+AGG 0.641609 tig0022477:-24545 Msa1400820:CDS
AAGGATTTGATTTATTACGA+CGG 0.646175 tig0022477:+25276 None:intergenic
GGTTGGTTTATCTTCTTCGG+CGG 0.647196 tig0022477:+25166 None:intergenic
TGGGGTGGAAACAAGGGCAA+GGG 0.650980 tig0022477:-24509 Msa1400820:CDS
CAGTAGGTACCGATAGCGGT+AGG 0.651574 tig0022477:-25322 Msa1400820:five_prime_UTR
GGTGTGTAAAGAGAAGAGGA+GGG 0.655832 tig0022477:+25092 None:intergenic
GAGATTGAATATTTCCGGTG+AGG 0.659798 tig0022477:-24715 Msa1400820:CDS
CTTGATGGTCGATACTTTGG+GGG 0.673875 tig0022477:-20187 Msa1400820:CDS
AGAGGATGATGGCAAAGATG+GGG 0.674521 tig0022477:-24527 Msa1400820:CDS
AGTACTGCTACTTAGAAACA+TGG 0.680250 tig0022477:-24346 Msa1400820:intron
GTGTTTGTAACAGTGACTAA+GGG 0.683417 tig0022477:-19946 Msa1400820:three_prime_UTR
GGTTGAACAACATCGTCGAG+TGG 0.685085 tig0022477:+24975 None:intergenic
CGACCGTCGAGAAAATCAGT+AGG 0.685574 tig0022477:-25338 Msa1400820:five_prime_UTR
AAATCAGTAGGTACCGATAG+CGG 0.685777 tig0022477:-25326 Msa1400820:five_prime_UTR
GATCGAAGAAGGGTATGGGG+AGG 0.698654 tig0022477:+25071 None:intergenic
TGGAGGAGTACGATCCGGCG+AGG 0.720137 tig0022477:-24914 Msa1400820:CDS
TCAAGTTCAACAATGTACAG+TGG 0.731687 tig0022477:+19862 None:intergenic
AATCCATCCACACTCCCGGG+AGG 0.744351 tig0022477:+24615 None:intergenic
TCTTGTAGGAGTACAGTCGA+CGG 0.763092 tig0022477:-24940 Msa1400820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATGTTTATAATTATTAATA+TGG - tig0022477:23564-23583 Msa1400820:intron 10.0%
!!! AATAAATTAAACATCATTTT+AGG + tig0022477:24685-24704 None:intergenic 10.0%
!! TATATATTAGATTAGAAGAA+AGG - tig0022477:21298-21317 Msa1400820:intron 15.0%
!! TCTCAATAAATTTAAAGAAT+TGG - tig0022477:23112-23131 Msa1400820:intron 15.0%
!! TTTAATGTTAAATGCTTGTT+TGG - tig0022477:20799-20818 Msa1400820:intron 20.0%
!!! TTTTAATTTGAAAATAGCAC+AGG - tig0022477:20989-21008 Msa1400820:intron 20.0%
!! TTATTATGGAAAGAATTCAA+TGG + tig0022477:22362-22381 None:intergenic 20.0%
!!! AAAGTATTTGGTAGAAATTA+CGG + tig0022477:22622-22641 None:intergenic 20.0%
!!! ATTTTATGGTTTAGTTTAGA+AGG - tig0022477:23218-23237 Msa1400820:intron 20.0%
!! TTCAATGCCAATAAAAATAA+TGG + tig0022477:23307-23326 None:intergenic 20.0%
!!! ATTTTTATTGGCATTGAAAT+TGG - tig0022477:23309-23328 Msa1400820:intron 20.0%
!!! AATTTTCTGATTATATGACT+TGG - tig0022477:23440-23459 Msa1400820:intron 20.0%
!!! TATTTCTTACTATGGAATTT+TGG - tig0022477:23665-23684 Msa1400820:intron 20.0%
!! AAAGAACTGTAATTCTTAAA+AGG + tig0022477:23730-23749 None:intergenic 20.0%
!!! TTCCTTTCATAATATTTTGA+AGG - tig0022477:23901-23920 Msa1400820:intron 20.0%
!! GAAAGAATGAAAAAGAATTT+CGG + tig0022477:23960-23979 None:intergenic 20.0%
!!! GAAATTCTTTTTCATTCTTT+CGG - tig0022477:23959-23978 Msa1400820:intron 20.0%
!! TATTTCTTTCTTTCTTTCTT+AGG + tig0022477:24278-24297 None:intergenic 20.0%
!! ATGACAAAAGATTAACAATA+AGG + tig0022477:24631-24650 None:intergenic 20.0%
!! AAGGATTTGATTTATTACGA+CGG + tig0022477:19839-19858 None:intergenic 25.0%
!!! GACAATTTTAGGTTTGTTTT+GGG + tig0022477:20066-20085 None:intergenic 25.0%
!!! TGACAATTTTAGGTTTGTTT+TGG + tig0022477:20067-20086 None:intergenic 25.0%
! TTCTAACTCATAAAACAGAA+TGG + tig0022477:21195-21214 None:intergenic 25.0%
! ATATTAGATTAGAAGAAAGG+AGG - tig0022477:21301-21320 Msa1400820:intron 25.0%
! TAAATGTCCATGATAAATAC+TGG - tig0022477:21900-21919 Msa1400820:intron 25.0%
! TATAGAAACGTTGAAAGAAA+AGG - tig0022477:21932-21951 Msa1400820:intron 25.0%
!!! TTTTAGAAGGAAAGATTTCA+GGG + tig0022477:22007-22026 None:intergenic 25.0%
!!! TTTTATGTTTTGTTGGAGAT+TGG + tig0022477:22030-22049 None:intergenic 25.0%
! AAAATTGGTTGGAGATTTAT+AGG + tig0022477:22523-22542 None:intergenic 25.0%
!! AATCTCCAACCAATTTTTAA+AGG - tig0022477:22526-22545 Msa1400820:intron 25.0%
!! ATCTCCAACCAATTTTTAAA+GGG - tig0022477:22527-22546 Msa1400820:intron 25.0%
!! TAGACCTTTCAAGAAAATTT+TGG - tig0022477:22680-22699 Msa1400820:intron 25.0%
! ATGTTACAAAGCAATTATGT+TGG + tig0022477:22921-22940 None:intergenic 25.0%
!! TACACAGACACATAATTTTA+TGG - tig0022477:23204-23223 Msa1400820:intron 25.0%
!!! ATGCTTGTTTGTTATGAAAA+TGG + tig0022477:23266-23285 None:intergenic 25.0%
!!! ACACGTTCCATTATTTTTAT+TGG - tig0022477:23297-23316 Msa1400820:intron 25.0%
! TATGATGTTAATACAGTATG+AGG - tig0022477:23537-23556 Msa1400820:intron 25.0%
! ATGATGTTAATACAGTATGA+GGG - tig0022477:23538-23557 Msa1400820:intron 25.0%
! AATATGGTGTAGTTGTAAAT+CGG - tig0022477:23580-23599 Msa1400820:intron 25.0%
!! TTACTATGGAATTTTGGATT+AGG - tig0022477:23671-23690 Msa1400820:intron 25.0%
!! CATGGTATATTTTCTTTCTT+GGG - tig0022477:23762-23781 Msa1400820:intron 25.0%
!! ATGGTATATTTTCTTTCTTG+GGG - tig0022477:23763-23782 Msa1400820:intron 25.0%
! TCAATGAAAATAAGCTCATT+TGG + tig0022477:23860-23879 None:intergenic 25.0%
! CTCCTTCAAAATATTATGAA+AGG + tig0022477:23906-23925 None:intergenic 25.0%
! TTCATTCTTTCGGTAATTTA+TGG - tig0022477:23969-23988 Msa1400820:intron 25.0%
! TCATTCTTTCGGTAATTTAT+GGG - tig0022477:23970-23989 Msa1400820:intron 25.0%
! GCATTAATAATATGCAAATG+AGG + tig0022477:24131-24150 None:intergenic 25.0%
! TTTGCATATTATTAATGCTG+AGG - tig0022477:24133-24152 Msa1400820:intron 25.0%
! TTAAATCTGATCTATTGCTT+TGG + tig0022477:24172-24191 None:intergenic 25.0%
!! GAAGAAATTTTCTTAGAAAG+AGG - tig0022477:24232-24251 Msa1400820:intron 25.0%
!! AAATTTTCTTAGAAAGAGGA+TGG - tig0022477:24236-24255 Msa1400820:intron 25.0%
!! AATTTTCTTAGAAAGAGGAT+GGG - tig0022477:24237-24256 Msa1400820:intron 25.0%
! TTATCTCAAATATCAGAACT+CGG + tig0022477:24819-24838 None:intergenic 25.0%
! TCCTTAATATTATGATCACT+TGG - tig0022477:25277-25296 Msa1400820:five_prime_UTR 25.0%
! TCCAAGTGATCATAATATTA+AGG + tig0022477:25281-25300 None:intergenic 25.0%
! TTGGTGGAATTGACAATTTT+AGG + tig0022477:20077-20096 None:intergenic 30.0%
CGATACTCTTCATAATCATT+CGG + tig0022477:20224-20243 None:intergenic 30.0%
! CGAATGATTATGAAGAGTAT+CGG - tig0022477:20222-20241 Msa1400820:CDS 30.0%
GATTCGAGATTGAATATTTC+CGG - tig0022477:20392-20411 Msa1400820:intron 30.0%
!! GTTAAGAGTGTTAACATCAA+TGG - tig0022477:20731-20750 Msa1400820:intron 30.0%
! GTTAAATGCTTGTTTGGTTT+CGG - tig0022477:20805-20824 Msa1400820:intron 30.0%
TGAATATTTGGCATATGATG+TGG - tig0022477:21016-21035 Msa1400820:intron 30.0%
ATAATCGATATGACTACATC+CGG + tig0022477:21069-21088 None:intergenic 30.0%
!! AACACATCACACTTTTTACT+AGG - tig0022477:21154-21173 Msa1400820:intron 30.0%
TATATTCAGAAACACAGTGA+AGG + tig0022477:21256-21275 None:intergenic 30.0%
AAACAATGTCTAACTAACAG+AGG + tig0022477:21341-21360 None:intergenic 30.0%
CTACCTTTACTATTGTGTTA+GGG + tig0022477:21417-21436 None:intergenic 30.0%
ACTACCTTTACTATTGTGTT+AGG + tig0022477:21418-21437 None:intergenic 30.0%
AAAGGTAGTAGTATACAAAG+AGG - tig0022477:21429-21448 Msa1400820:intron 30.0%
AAGGTAGTAGTATACAAAGA+GGG - tig0022477:21430-21449 Msa1400820:intron 30.0%
!! TTAGTTGGTCAGTTTGTTTT+TGG - tig0022477:21474-21493 Msa1400820:intron 30.0%
ATAAACGTTCTTAATCACAC+AGG - tig0022477:21524-21543 Msa1400820:intron 30.0%
TAAACGTTCTTAATCACACA+GGG - tig0022477:21525-21544 Msa1400820:intron 30.0%
ATGTTGTATGAACAAATGCT+AGG - tig0022477:21709-21728 Msa1400820:intron 30.0%
AGTTGTAGTAACAAATGTCA+AGG - tig0022477:21870-21889 Msa1400820:intron 30.0%
TTCAACGTTTCTATATTCTC+TGG + tig0022477:21927-21946 None:intergenic 30.0%
!!! GTTTTAGAAGGAAAGATTTC+AGG + tig0022477:22008-22027 None:intergenic 30.0%
!! TTTGGGGTTTTATGTTTTGT+TGG + tig0022477:22037-22056 None:intergenic 30.0%
AAAATTCCACGTGATATTGA+TGG + tig0022477:22273-22292 None:intergenic 30.0%
! TTTTTCATTCTTGCAAACAC+AGG - tig0022477:22290-22309 Msa1400820:intron 30.0%
AAAGAATTCAATGGAGATTC+AGG + tig0022477:22353-22372 None:intergenic 30.0%
TTCTTTCCATAATAACTAGC+CGG - tig0022477:22367-22386 Msa1400820:intron 30.0%
AGATATTTGTGAGAAGAACA+AGG + tig0022477:22590-22609 None:intergenic 30.0%
TTGTTCTTCTCACAAATATC+TGG - tig0022477:22589-22608 Msa1400820:intron 30.0%
ATTTCTACCAAATACTTTGC+TGG - tig0022477:22624-22643 Msa1400820:intron 30.0%
TTTCTACCAAATACTTTGCT+GGG - tig0022477:22625-22644 Msa1400820:intron 30.0%
! ACCTTTCAAGAAAATTTTGG+TGG - tig0022477:22683-22702 Msa1400820:intron 30.0%
! ACCACCAAAATTTTCTTGAA+AGG + tig0022477:22687-22706 None:intergenic 30.0%
TCATGTAACGAAACTTGTAA+GGG + tig0022477:23080-23099 None:intergenic 30.0%
ATCATGTAACGAAACTTGTA+AGG + tig0022477:23081-23100 None:intergenic 30.0%
TTAAAGAATTGGCCACTTAT+AGG - tig0022477:23123-23142 Msa1400820:intron 30.0%
! TATGGTTTAGTTTAGAAGGA+AGG - tig0022477:23222-23241 Msa1400820:intron 30.0%
! ATGGTTTAGTTTAGAAGGAA+GGG - tig0022477:23223-23242 Msa1400820:intron 30.0%
! TATATGACTTGGATGTATCT+TGG - tig0022477:23451-23470 Msa1400820:intron 30.0%
TGATGTTAATACAGTATGAG+GGG - tig0022477:23539-23558 Msa1400820:intron 30.0%
ATATGGTGTAGTTGTAAATC+GGG - tig0022477:23581-23600 Msa1400820:intron 30.0%
!! TGTGGCTTTATTTCTTACTA+TGG - tig0022477:23657-23676 Msa1400820:intron 30.0%
!! TTCTTTGAGTTGAATATCCA+TGG - tig0022477:23744-23763 Msa1400820:intron 30.0%
CCAAGAAAGAAAATATACCA+TGG + tig0022477:23764-23783 None:intergenic 30.0%
! CCATGGTATATTTTCTTTCT+TGG - tig0022477:23761-23780 Msa1400820:intron 30.0%
! TGGTATATTTTCTTTCTTGG+GGG - tig0022477:23764-23783 Msa1400820:intron 30.0%
! AAAATAAGCTCATTTGGCTT+TGG + tig0022477:23854-23873 None:intergenic 30.0%
CATTCTTTCGGTAATTTATG+GGG - tig0022477:23971-23990 Msa1400820:intron 30.0%
TCAACCAATAATTACAATGC+AGG + tig0022477:24019-24038 None:intergenic 30.0%
! TTTTAAACTGTTTAGGCACT+GGG - tig0022477:24075-24094 Msa1400820:intron 30.0%
AGTTGATCAATGTCAAACAA+AGG + tig0022477:24212-24231 None:intergenic 30.0%
! ATTTTCTTAGAAAGAGGATG+GGG - tig0022477:24238-24257 Msa1400820:intron 30.0%
!!! TCTGTTTTAGGTTTTTGTCA+GGG + tig0022477:24322-24341 None:intergenic 30.0%
!!! TTCTGTTTTAGGTTTTTGTC+AGG + tig0022477:24323-24342 None:intergenic 30.0%
! AACATTCCAATTTTCACGAT+TGG + tig0022477:24378-24397 None:intergenic 30.0%
!!! TCTAGTCAATTTTGACTTCT+TGG - tig0022477:24425-24444 Msa1400820:CDS 30.0%
TGTACTAAATCAAGTTCATC+TGG + tig0022477:24577-24596 None:intergenic 30.0%
TATCTCAAATATCAGAACTC+GGG + tig0022477:24818-24837 None:intergenic 30.0%
! GAACATCTATGATTTTCATC+AGG - tig0022477:25046-25065 Msa1400820:CDS 30.0%
TTACATGATAGTTGAGCATT+TGG - tig0022477:25121-25140 Msa1400820:CDS 30.0%
AAACACATTTAGACCAAGAT+TGG + tig0022477:25152-25171 None:intergenic 30.0%
! TCAACTAGTTTAAGATCAAG+TGG + tig0022477:25332-25351 None:intergenic 30.0%
ACTTGATCTTAAACTAGTTG+AGG - tig0022477:25331-25350 Msa1400820:five_prime_UTR 30.0%
!!! TTTGTTTTGGGATCGAAGAA+GGG + tig0022477:20054-20073 None:intergenic 35.0%
!! ATGATTATGAAGAGTATCGG+AGG - tig0022477:20225-20244 Msa1400820:CDS 35.0%
!! TGATTATGAAGAGTATCGGA+GGG - tig0022477:20226-20245 Msa1400820:CDS 35.0%
! AGTGTGGATGGATTTAGTAT+TGG - tig0022477:20506-20525 Msa1400820:intron 35.0%
! GTGTGGATGGATTTAGTATT+GGG - tig0022477:20507-20526 Msa1400820:intron 35.0%
! TGGATTTAGTATTGGGAAGT+CGG - tig0022477:20514-20533 Msa1400820:intron 35.0%
! AGTACTGCTACTTAGAAACA+TGG - tig0022477:20766-20785 Msa1400820:intron 35.0%
!!! TTTCAGCTGCATTGTTTTGA+TGG - tig0022477:20897-20916 Msa1400820:intron 35.0%
!!! TTCAGCTGCATTGTTTTGAT+GGG - tig0022477:20898-20917 Msa1400820:intron 35.0%
AGCACAGGCTAATGAATATT+TGG - tig0022477:21004-21023 Msa1400820:intron 35.0%
CTTTACTATTGTGTTAGGGA+AGG + tig0022477:21413-21432 None:intergenic 35.0%
CTTCCCTAACACAATAGTAA+AGG - tig0022477:21411-21430 Msa1400820:intron 35.0%
AGGTAGTAGTATACAAAGAG+GGG - tig0022477:21431-21450 Msa1400820:intron 35.0%
TGTAATTGAGGGATGTTAGT+TGG - tig0022477:21459-21478 Msa1400820:intron 35.0%
AACAGCTTCCAAATTAAGTG+TGG + tig0022477:21585-21604 None:intergenic 35.0%
TGAGATTACTGTGTTCTTTC+TGG + tig0022477:21640-21659 None:intergenic 35.0%
AAGAACACAGTAATCTCATG+TGG - tig0022477:21642-21661 Msa1400820:intron 35.0%
TCTCATGTGGAATATCTTTC+TGG - tig0022477:21655-21674 Msa1400820:intron 35.0%
GAAACGTTGAAAGAAAAGGT+TGG - tig0022477:21936-21955 Msa1400820:intron 35.0%
TACATTCAGTTGTTCCTTTC+AGG - tig0022477:21972-21991 Msa1400820:intron 35.0%
!!! TGTTGGAGATTGGTTTTAGA+AGG + tig0022477:22020-22039 None:intergenic 35.0%
ATTGATGGAGGAATATTCGA+GGG + tig0022477:22258-22277 None:intergenic 35.0%
TATTGATGGAGGAATATTCG+AGG + tig0022477:22259-22278 None:intergenic 35.0%
ATACATTCCTTACCTTTGTC+AGG - tig0022477:22474-22493 Msa1400820:intron 35.0%
! AGGTTTAGGTTTCCACTAAT+GGG + tig0022477:22503-22522 None:intergenic 35.0%
! TAGGTTTAGGTTTCCACTAA+TGG + tig0022477:22504-22523 None:intergenic 35.0%
GGTTGGAGATTTATAGGTTT+AGG + tig0022477:22517-22536 None:intergenic 35.0%
! AAGGCCCTTTAAAAATTGGT+TGG + tig0022477:22534-22553 None:intergenic 35.0%
! GAGTAAGGCCCTTTAAAAAT+TGG + tig0022477:22538-22557 None:intergenic 35.0%
TCTTGCAAATGTAACGAGTA+AGG + tig0022477:22553-22572 None:intergenic 35.0%
TTACTCGTTACATTTGCAAG+AGG - tig0022477:22552-22571 Msa1400820:intron 35.0%
CTTGAAACAAGTGATTCTTG+TGG + tig0022477:22753-22772 None:intergenic 35.0%
AATCCCTGTGAATTACTCTT+GGG + tig0022477:22776-22795 None:intergenic 35.0%
GAAATCAGAATCCCTCATAT+GGG + tig0022477:22847-22866 None:intergenic 35.0%
AGAAATCAGAATCCCTCATA+TGG + tig0022477:22848-22867 None:intergenic 35.0%
!!! TTTGTGCTTGTTTTTGTGGT+GGG + tig0022477:22883-22902 None:intergenic 35.0%
CAAGTTTCGTTACATGATTG+AGG - tig0022477:23083-23102 Msa1400820:intron 35.0%
AAACATCACGACTATTGACA+TGG - tig0022477:23146-23165 Msa1400820:intron 35.0%
AACAAACAAGCATGCATCTA+TGG - tig0022477:23273-23292 Msa1400820:intron 35.0%
!!! CTCATTGTCTTTTCAAGTGT+TGG - tig0022477:23377-23396 Msa1400820:intron 35.0%
TCAATGTCCTGTTCTTAGAA+TGG - tig0022477:23514-23533 Msa1400820:intron 35.0%
! CATCATACCATTCTAAGAAC+AGG + tig0022477:23524-23543 None:intergenic 35.0%
CTAGGATTCATTAGCAGATT+GGG - tig0022477:23606-23625 Msa1400820:intron 35.0%
ATAAAGCCACAATCTATCCA+GGG + tig0022477:23648-23667 None:intergenic 35.0%
AATAAAGCCACAATCTATCC+AGG + tig0022477:23649-23668 None:intergenic 35.0%
!! GAGCTTATTTTCATTGAGAG+CGG - tig0022477:23863-23882 Msa1400820:intron 35.0%
!! AGCTTATTTTCATTGAGAGC+GGG - tig0022477:23864-23883 Msa1400820:intron 35.0%
TGTGCCTGCATTGTAATTAT+TGG - tig0022477:24012-24031 Msa1400820:intron 35.0%
! AACAGTTTAAAACAGACGCA+AGG + tig0022477:24067-24086 None:intergenic 35.0%
!! GCGTCTGTTTTAAACTGTTT+AGG - tig0022477:24068-24087 Msa1400820:intron 35.0%
!! GTTTTAAACTGTTTAGGCAC+TGG - tig0022477:24074-24093 Msa1400820:intron 35.0%
! TTTAAACTGTTTAGGCACTG+GGG - tig0022477:24076-24095 Msa1400820:intron 35.0%
! TGTCACAAGACTTCTGTTTT+AGG + tig0022477:24334-24353 None:intergenic 35.0%
GCTCAATACTAGACATGTAA+TGG + tig0022477:24486-24505 None:intergenic 35.0%
AACCTAAAGTTCCAGTATAC+AGG + tig0022477:24541-24560 None:intergenic 35.0%
!!! TTGTTGCTTTGTTTTGAAGG+TGG - tig0022477:24723-24742 Msa1400820:CDS 35.0%
!!! TGTTGCTTTGTTTTGAAGGT+GGG - tig0022477:24724-24743 Msa1400820:CDS 35.0%
CATAGATGTTCTGTTCTTCT+AGG + tig0022477:25037-25056 None:intergenic 35.0%
TTACGCTGAAGACTTGAAAT+TGG - tig0022477:25082-25101 Msa1400820:CDS 35.0%
TGTGTTTGTAACAGTGACTA+AGG - tig0022477:25165-25184 Msa1400820:CDS 35.0%
GTGTTTGTAACAGTGACTAA+GGG - tig0022477:25166-25185 Msa1400820:CDS 35.0%
TCAAGTTCAACAATGTACAG+TGG + tig0022477:25253-25272 None:intergenic 35.0%
!!! GTACCTACTGATTTTCTCGA+CGG + tig0022477:19780-19799 None:intergenic 40.0%
!! AAATCAGTAGGTACCGATAG+CGG - tig0022477:19786-19805 Msa1400820:three_prime_UTR 40.0%
ACACTATTTCCTACCGCTAT+CGG + tig0022477:19802-19821 None:intergenic 40.0%
! GTGCACGGTGTTTAAGATTA+AGG + tig0022477:19858-19877 None:intergenic 40.0%
!! GAAATGTTGGGTGGGTTATA+CGG - tig0022477:19903-19922 Msa1400820:three_prime_UTR 40.0%
!! GGTGGTTGGTTTATCTTCTT+CGG + tig0022477:19952-19971 None:intergenic 40.0%
ATAAACCAACCACCAATGTC+TGG - tig0022477:19958-19977 Msa1400820:three_prime_UTR 40.0%
AAAGAGAAGAGGAGGGTTTA+CGG + tig0022477:20016-20035 None:intergenic 40.0%
!!! GTTTGTTTTGGGATCGAAGA+AGG + tig0022477:20055-20074 None:intergenic 40.0%
!!! AGGAGAGAGAATAGTTTTGG+TGG + tig0022477:20093-20112 None:intergenic 40.0%
! TGCAGGAGAGAGAATAGTTT+TGG + tig0022477:20096-20115 None:intergenic 40.0%
TGTTGTTCAACCATCTCAAC+CGG - tig0022477:20148-20167 Msa1400820:CDS 40.0%
AAAGGGAGAGAGATAGAGAT+AGG - tig0022477:20354-20373 Msa1400820:CDS 40.0%
AAGGGAGAGAGATAGAGATA+GGG - tig0022477:20355-20374 Msa1400820:CDS 40.0%
GAGATTGAATATTTCCGGTG+AGG - tig0022477:20397-20416 Msa1400820:intron 40.0%
CTTATCAGACTTACTGTCAC+TGG + tig0022477:20708-20727 None:intergenic 40.0%
GTTTCTAAGTAGCAGTACTC+TGG + tig0022477:20765-20784 None:intergenic 40.0%
CACCAAGTCAAAACATCAGA+AGG + tig0022477:21042-21061 None:intergenic 40.0%
!!! TGTTTTGACTTGGTGATCAC+CGG - tig0022477:21047-21066 Msa1400820:intron 40.0%
TCAGAAACACAGTGAAGGAA+TGG + tig0022477:21251-21270 None:intergenic 40.0%
TGAAACTGTTAGAGAAGCTG+TGG - tig0022477:21370-21389 Msa1400820:intron 40.0%
GGTAGTAGTATACAAAGAGG+GGG - tig0022477:21432-21451 Msa1400820:intron 40.0%
GTAGTAGTATACAAAGAGGG+GGG - tig0022477:21433-21452 Msa1400820:intron 40.0%
TAGTAGTATACAAAGAGGGG+GGG - tig0022477:21434-21453 Msa1400820:intron 40.0%
!!! GTTGGTCAGTTTGTTTTTGG+TGG - tig0022477:21477-21496 Msa1400820:intron 40.0%
CTTGGCTTCCACACTTAATT+TGG - tig0022477:21574-21593 Msa1400820:intron 40.0%
CTAGGAAATGAAGTGTGAAC+AGG - tig0022477:21727-21746 Msa1400820:intron 40.0%
CTCTGGACCAGTATTTATCA+TGG + tig0022477:21910-21929 None:intergenic 40.0%
CAGTTGTTCCTTTCAGGATT+TGG - tig0022477:21978-21997 Msa1400820:intron 40.0%
AGAGAAGGGAGAGAAGATTT+GGG + tig0022477:22054-22073 None:intergenic 40.0%
AAGAGAAGGGAGAGAAGATT+TGG + tig0022477:22055-22074 None:intergenic 40.0%
GGTTAGAATTCCAACAGGTT+TGG + tig0022477:22093-22112 None:intergenic 40.0%
! GAGTTGGTTAGAATTCCAAC+AGG + tig0022477:22098-22117 None:intergenic 40.0%
GAGGAGAAGGGAAAATTTCA+GGG + tig0022477:22172-22191 None:intergenic 40.0%
TGAGGAGAAGGGAAAATTTC+AGG + tig0022477:22173-22192 None:intergenic 40.0%
! TGAAGTTAGCTTGAGGAGAA+GGG + tig0022477:22184-22203 None:intergenic 40.0%
GAATATTCGAGGGAAGGATA+AGG + tig0022477:22248-22267 None:intergenic 40.0%
ATTCCTCCATCAATATCACG+TGG - tig0022477:22264-22283 Msa1400820:intron 40.0%
ATTCCACGTGATATTGATGG+AGG + tig0022477:22270-22289 None:intergenic 40.0%
TAAAGAATCCACACTCACAC+CGG + tig0022477:22389-22408 None:intergenic 40.0%
GATGAGGGATAACTGATGTA+CGG - tig0022477:22432-22451 Msa1400820:intron 40.0%
! GAATGTATTGACAGCAACTG+AGG + tig0022477:22462-22481 None:intergenic 40.0%
! GGTTTAGGTTTCCACTAATG+GGG + tig0022477:22502-22521 None:intergenic 40.0%
! ACATTTGCAAGAGGCTTTGT+TGG - tig0022477:22561-22580 Msa1400820:intron 40.0%
!! CATTTGCAAGAGGCTTTGTT+GGG - tig0022477:22562-22581 Msa1400820:intron 40.0%
! GTTACACCCAGCAAAGTATT+TGG + tig0022477:22634-22653 None:intergenic 40.0%
GTTTGTGTCTGTACCTCAAA+GGG - tig0022477:22705-22724 Msa1400820:intron 40.0%
GAAACAAGTGATTCTTGTGG+AGG + tig0022477:22750-22769 None:intergenic 40.0%
AAGCCCAAGAGTAATTCACA+GGG - tig0022477:22770-22789 Msa1400820:intron 40.0%
GAATCCCTGTGAATTACTCT+TGG + tig0022477:22777-22796 None:intergenic 40.0%
ATTCAGAGCAGCACTAATAG+AGG + tig0022477:22820-22839 None:intergenic 40.0%
TCTGAATTCTGCCCATATGA+GGG - tig0022477:22833-22852 Msa1400820:intron 40.0%
!!! CTTTGTGCTTGTTTTTGTGG+TGG + tig0022477:22884-22903 None:intergenic 40.0%
CACCACAAAAACAAGCACAA+AGG - tig0022477:22882-22901 Msa1400820:intron 40.0%
ATTATGTTGGCCATGAAGGT+TGG + tig0022477:22908-22927 None:intergenic 40.0%
AGCAATTATGTTGGCCATGA+AGG + tig0022477:22912-22931 None:intergenic 40.0%
ATGGCTGACAAAGATGGAAA+GGG + tig0022477:22958-22977 None:intergenic 40.0%
ATATGGATGGCTGACAAAGA+TGG + tig0022477:22964-22983 None:intergenic 40.0%
TCCATTCTTCTCTTGTTCAG+AGG - tig0022477:23020-23039 Msa1400820:intron 40.0%
TCCTCTGAACAAGAGAAGAA+TGG + tig0022477:23024-23043 None:intergenic 40.0%
TTGTTCAGAGGAGATTCAGA+CGG - tig0022477:23032-23051 Msa1400820:intron 40.0%
GTAACGAAACTTGTAAGGGA+AGG + tig0022477:23076-23095 None:intergenic 40.0%
GTCGTGATGTTTCCTATAAG+TGG + tig0022477:23138-23157 None:intergenic 40.0%
TTGGAAATCAGCAATGCCAT+TGG - tig0022477:23396-23415 Msa1400820:intron 40.0%
GAAAAACAGTTGCTCATCCA+CGG + tig0022477:23496-23515 None:intergenic 40.0%
GCTAGGATTCATTAGCAGAT+TGG - tig0022477:23605-23624 Msa1400820:intron 40.0%
!!! GTTTTTTGATATGCTGTCCC+TGG - tig0022477:23628-23647 Msa1400820:intron 40.0%
TTCAGAGTGCAGTCAAGTTT+GGG - tig0022477:23699-23718 Msa1400820:intron 40.0%
GTATCACTTCATGATGCTGA+CGG - tig0022477:23811-23830 Msa1400820:intron 40.0%
AATGCAGGCACAAAGTCAAA+AGG + tig0022477:24004-24023 None:intergenic 40.0%
! TTAGGTTTTTGTCAGGGAGA+GGG + tig0022477:24316-24335 None:intergenic 40.0%
!! TTTAGGTTTTTGTCAGGGAG+AGG + tig0022477:24317-24336 None:intergenic 40.0%
ATTGGAGAGCTCTTTACAGA+GGG + tig0022477:24360-24379 None:intergenic 40.0%
AGCTCTCCAATCGTGAAAAT+TGG - tig0022477:24369-24388 Msa1400820:CDS 40.0%
AAAAGCTTGTGCCTGTATAC+TGG - tig0022477:24527-24546 Msa1400820:CDS 40.0%
TGCCTGTATACTGGAACTTT+AGG - tig0022477:24536-24555 Msa1400820:CDS 40.0%
!!! GTTGCTTTGTTTTGAAGGTG+GGG - tig0022477:24725-24744 Msa1400820:CDS 40.0%
ATTCTTACTGCTTCGTCAGT+GGG + tig0022477:24856-24875 None:intergenic 40.0%
! ACCTTGATGGTCGATACTTT+GGG - tig0022477:24923-24942 Msa1400820:CDS 40.0%
GCATTTGGTTAAGCCAATCT+TGG - tig0022477:25136-25155 Msa1400820:CDS 40.0%
! CAAGTAAGGAGTTTTCAGTG+TGG + tig0022477:25219-25238 None:intergenic 40.0%
TTATCTTCTTCGGCGGAAGA+AGG + tig0022477:19942-19961 None:intergenic 45.0%
!! GGTTGGTTTATCTTCTTCGG+CGG + tig0022477:19949-19968 None:intergenic 45.0%
GGTGTGTAAAGAGAAGAGGA+GGG + tig0022477:20023-20042 None:intergenic 45.0%
AGGTGTGTAAAGAGAAGAGG+AGG + tig0022477:20024-20043 None:intergenic 45.0%
! TTGGGATCGAAGAAGGGTAT+GGG + tig0022477:20048-20067 None:intergenic 45.0%
! TTTGGGATCGAAGAAGGGTA+TGG + tig0022477:20049-20068 None:intergenic 45.0%
! TCTTGTAGGAGTACAGTCGA+CGG - tig0022477:20172-20191 Msa1400820:CDS 45.0%
TAGAGAAGCGGAGATGATGA+GGG - tig0022477:20265-20284 Msa1400820:CDS 45.0%
AGAGGGAGAGAGAAAGAGAA+AGG - tig0022477:20336-20355 Msa1400820:CDS 45.0%
GAGGGAGAGAGAAAGAGAAA+GGG - tig0022477:20337-20356 Msa1400820:CDS 45.0%
TAGAGATAGGGAGAGAGATC+AGG - tig0022477:20367-20386 Msa1400820:CDS 45.0%
AGAGATAGGGAGAGAGATCA+GGG - tig0022477:20368-20387 Msa1400820:CDS 45.0%
ATATTTCCGGTGAGGAAGCA+TGG - tig0022477:20405-20424 Msa1400820:intron 45.0%
ACTAAATCCATCCACACTCC+CGG + tig0022477:20504-20523 None:intergenic 45.0%
! TAGTATTGGGAAGTCGGAGA+CGG - tig0022477:20520-20539 Msa1400820:intron 45.0%
! TCAGAGGATGATGGCAAAGA+TGG - tig0022477:20583-20602 Msa1400820:intron 45.0%
! CAGAGGATGATGGCAAAGAT+GGG - tig0022477:20584-20603 Msa1400820:intron 45.0%
! AGAGGATGATGGCAAAGATG+GGG - tig0022477:20585-20604 Msa1400820:intron 45.0%
CAAAGATGGGGTGGAAACAA+GGG - tig0022477:20597-20616 Msa1400820:intron 45.0%
AGGGATTACAACTCCGTTGA+TGG - tig0022477:20643-20662 Msa1400820:intron 45.0%
! TCGGTTTTCTTCGCCATCAA+CGG + tig0022477:20659-20678 None:intergenic 45.0%
TGGCGAAGAAAACCGATAGA+CGG - tig0022477:20663-20682 Msa1400820:intron 45.0%
CTAAGTAGCAGTACTCTGGT+AGG + tig0022477:20761-20780 None:intergenic 45.0%
!!! GGCCTTCTGATGTTTTGACT+TGG - tig0022477:21037-21056 Msa1400820:intron 45.0%
TAGAAGAAAGGAGGTCCAAG+TGG - tig0022477:21310-21329 Msa1400820:intron 45.0%
AGAAGAAAGGAGGTCCAAGT+GGG - tig0022477:21311-21330 Msa1400820:intron 45.0%
! TGGAAGCCAAGTTGAGCAAT+GGG + tig0022477:21565-21584 None:intergenic 45.0%
GAGAAGGGAGAGAAGATTTG+GGG + tig0022477:22053-22072 None:intergenic 45.0%
TCTTCTCTCCCTTCTCTTTG+TGG - tig0022477:22057-22076 Msa1400820:intron 45.0%
GAATTCCAACAGGTTTGGCA+GGG + tig0022477:22088-22107 None:intergenic 45.0%
AGAATTCCAACAGGTTTGGC+AGG + tig0022477:22089-22108 None:intergenic 45.0%
CTAGTCAGCATGGATAGAGT+TGG + tig0022477:22114-22133 None:intergenic 45.0%
!! TTTCAGGGTGGAGTATTGTC+AGG + tig0022477:22157-22176 None:intergenic 45.0%
GAGAAGGGAAAATTTCAGGG+TGG + tig0022477:22169-22188 None:intergenic 45.0%
! CTGAAGTTAGCTTGAGGAGA+AGG + tig0022477:22185-22204 None:intergenic 45.0%
CTTCTCCTCAAGCTAACTTC+AGG - tig0022477:22183-22202 Msa1400820:intron 45.0%
! ACTCTCCTGAAGTTAGCTTG+AGG + tig0022477:22191-22210 None:intergenic 45.0%
TGCTGCATGACAATGGATGA+AGG + tig0022477:22217-22236 None:intergenic 45.0%
GAGAGATTGCTGCATGACAA+TGG + tig0022477:22224-22243 None:intergenic 45.0%
ATGGAGGAATATTCGAGGGA+AGG + tig0022477:22254-22273 None:intergenic 45.0%
! CTCACACCGGCTAGTTATTA+TGG + tig0022477:22376-22395 None:intergenic 45.0%
TCCAAGAGGAACATGAGTCT+GGG + tig0022477:22414-22433 None:intergenic 45.0%
ATCCAAGAGGAACATGAGTC+TGG + tig0022477:22415-22434 None:intergenic 45.0%
ACTCATGTTCCTCTTGGATG+AGG - tig0022477:22416-22435 Msa1400820:intron 45.0%
CTCATGTTCCTCTTGGATGA+GGG - tig0022477:22417-22436 Msa1400820:intron 45.0%
TCAGTTATCCCTCATCCAAG+AGG + tig0022477:22428-22447 None:intergenic 45.0%
! ACTAATGGGGTACCTGACAA+AGG + tig0022477:22489-22508 None:intergenic 45.0%
TTTGTCAGGTACCCCATTAG+TGG - tig0022477:22488-22507 Msa1400820:intron 45.0%
GGTTTGTGTCTGTACCTCAA+AGG - tig0022477:22704-22723 Msa1400820:intron 45.0%
! GGAGGAGTAAAAGAGTATGC+TGG + tig0022477:22732-22751 None:intergenic 45.0%
CAAGCCCAAGAGTAATTCAC+AGG - tig0022477:22769-22788 Msa1400820:intron 45.0%
TTCACAGGGATTCTGCATCA+TGG - tig0022477:22784-22803 Msa1400820:intron 45.0%
CTCTGAATTCTGCCCATATG+AGG - tig0022477:22832-22851 Msa1400820:intron 45.0%
!!! GGCCTTTGTGCTTGTTTTTG+TGG + tig0022477:22887-22906 None:intergenic 45.0%
GATGGCTGACAAAGATGGAA+AGG + tig0022477:22959-22978 None:intergenic 45.0%
ATTCTCAGGGGAGATGCATA+TGG + tig0022477:22981-23000 None:intergenic 45.0%
AAGAGAAGAATGGACAGCAG+AGG + tig0022477:23014-23033 None:intergenic 45.0%
AATCAGCAATGCCATTGGTC+TGG - tig0022477:23401-23420 Msa1400820:intron 45.0%
TGCTACATACACCAGACCAA+TGG + tig0022477:23415-23434 None:intergenic 45.0%
TTGGTCTGGTGTATGTAGCA+TGG - tig0022477:23415-23434 Msa1400820:intron 45.0%
GTAGTTGTAAATCGGGAGCT+AGG - tig0022477:23588-23607 Msa1400820:intron 45.0%
CTTCAGAGTGCAGTCAAGTT+TGG - tig0022477:23698-23717 Msa1400820:intron 45.0%
TGAAAGGAAACTCAACTCCC+AGG + tig0022477:23890-23909 None:intergenic 45.0%
TCTTAGAAAGAGGATGGGGA+AGG - tig0022477:24242-24261 Msa1400820:intron 45.0%
! TAGGTTTTTGTCAGGGAGAG+GGG + tig0022477:24315-24334 None:intergenic 45.0%
GATTGGAGAGCTCTTTACAG+AGG + tig0022477:24361-24380 None:intergenic 45.0%
AGATGATGAGCTGGAAGATG+AGG - tig0022477:24759-24778 Msa1400820:CDS 45.0%
GGATCAGAATGTGCCAAGTA+TGG - tig0022477:24784-24803 Msa1400820:CDS 45.0%
TCGGGTTACTGTTCCATACT+TGG + tig0022477:24800-24819 None:intergenic 45.0%
GCTTCGTCAGTGGGAAAATT+TGG + tig0022477:24847-24866 None:intergenic 45.0%
GATTCTTACTGCTTCGTCAG+TGG + tig0022477:24857-24876 None:intergenic 45.0%
! AAAGCGCTTGTTGACCTTGA+TGG - tig0022477:24910-24929 Msa1400820:CDS 45.0%
! GACCTTGATGGTCGATACTT+TGG - tig0022477:24922-24941 Msa1400820:CDS 45.0%
! CCTTGATGGTCGATACTTTG+GGG - tig0022477:24924-24943 Msa1400820:CDS 45.0%
! CTTGATGGTCGATACTTTGG+GGG - tig0022477:24925-24944 Msa1400820:CDS 45.0%
CTTGTCCTCGTCGTAAAATG+TGG + tig0022477:24965-24984 None:intergenic 45.0%
AATGAGTTAGCTCCAATGCC+AGG - tig0022477:24994-25013 Msa1400820:CDS 45.0%
! GTGACTAAGGGTTGTTGCTT+AGG - tig0022477:25178-25197 Msa1400820:CDS 45.0%
TGGCGACATTAGTGCAAGTA+AGG + tig0022477:25233-25252 None:intergenic 45.0%
AGTGGCGACAGCTTATTTGA+TGG + tig0022477:25314-25333 None:intergenic 45.0%
AAACCTCTCCTCGACGAAGA+AGG - tig0022477:19746-19765 Msa1400820:three_prime_UTR 50.0%
AACCTCTCCTCGACGAAGAA+GGG - tig0022477:19747-19766 Msa1400820:three_prime_UTR 50.0%
TCGATTTCCCTTCTTCGTCG+AGG + tig0022477:19757-19776 None:intergenic 50.0%
CGACCGTCGAGAAAATCAGT+AGG - tig0022477:19774-19793 Msa1400820:three_prime_UTR 50.0%
CGCAAACACAGAAACGTGCA+CGG + tig0022477:19873-19892 None:intergenic 50.0%
GCACGTTTCTGTGTTTGCGT+CGG - tig0022477:19874-19893 Msa1400820:three_prime_UTR 50.0%
CGTCGGAGCTTCGAAATGTT+GGG - tig0022477:19891-19910 Msa1400820:three_prime_UTR 50.0%
GGAGCTTCGAAATGTTGGGT+GGG - tig0022477:19895-19914 Msa1400820:three_prime_UTR 50.0%
! GATGACCAGACATTGGTGGT+TGG + tig0022477:19966-19985 None:intergenic 50.0%
CTGGTCATCCAGCACCAAAA+TGG - tig0022477:19977-19996 Msa1400820:three_prime_UTR 50.0%
! GGGAGGTGTGTAAAGAGAAG+AGG + tig0022477:20027-20046 None:intergenic 50.0%
! TGGGATCGAAGAAGGGTATG+GGG + tig0022477:20047-20066 None:intergenic 50.0%
TCGAGTGGCGAAGCAAGAAT+CGG + tig0022477:20125-20144 None:intergenic 50.0%
GGTTGAACAACATCGTCGAG+TGG + tig0022477:20140-20159 None:intergenic 50.0%
GACTGTACTCCTACAAGAGC+CGG + tig0022477:20170-20189 None:intergenic 50.0%
TCATAATCATTCGGCCTCGC+CGG + tig0022477:20215-20234 None:intergenic 50.0%
! AGTATCGGAGGGAGAAGAAG+AGG - tig0022477:20237-20256 Msa1400820:CDS 50.0%
GAAGAGGAAGGCTAGAGAAG+CGG - tig0022477:20253-20272 Msa1400820:CDS 50.0%
CTAGAGAAGCGGAGATGATG+AGG - tig0022477:20264-20283 Msa1400820:CDS 50.0%
CTAAATCCATCCACACTCCC+GGG + tig0022477:20503-20522 None:intergenic 50.0%
GCAAAGATGGGGTGGAAACA+AGG - tig0022477:20596-20615 Msa1400820:intron 50.0%
GGCGAAGAAAACCGATAGAC+GGG - tig0022477:20664-20683 Msa1400820:intron 50.0%
AAGAAAACCGATAGACGGGC+TGG - tig0022477:20668-20687 Msa1400820:intron 50.0%
! AGAAAACCGATAGACGGGCT+GGG - tig0022477:20669-20688 Msa1400820:intron 50.0%
AATAACCCCAGCCCGTCTAT+CGG + tig0022477:20678-20697 None:intergenic 50.0%
! TGCTTGTTAACGACGCTGAG+AGG - tig0022477:20836-20855 Msa1400820:intron 50.0%
ACTGTTAGAGAAGCTGTGGC+CGG - tig0022477:21374-21393 Msa1400820:intron 50.0%
AGAGGGGGGGAATGTAATTG+AGG - tig0022477:21447-21466 Msa1400820:intron 50.0%
GAGGGGGGGAATGTAATTGA+GGG - tig0022477:21448-21467 Msa1400820:intron 50.0%
ACAGCTCCCATTGCTCAACT+TGG - tig0022477:21556-21575 Msa1400820:intron 50.0%
! GTGGAAGCCAAGTTGAGCAA+TGG + tig0022477:21566-21585 None:intergenic 50.0%
CAGGGTCTCCAAATCCTGAA+AGG + tig0022477:21989-22008 None:intergenic 50.0%
GGGATAGGCCACAAAGAGAA+GGG + tig0022477:22068-22087 None:intergenic 50.0%
AGGGATAGGCCACAAAGAGA+AGG + tig0022477:22069-22088 None:intergenic 50.0%
!! AGCTGGTTTGCTAGTCAGCA+TGG + tig0022477:22124-22143 None:intergenic 50.0%
TGACTAGCAAACCAGCTCGT+TGG - tig0022477:22127-22146 Msa1400820:intron 50.0%
GACTAGCAAACCAGCTCGTT+GGG - tig0022477:22128-22147 Msa1400820:intron 50.0%
ATAACTAGCCGGTGTGAGTG+TGG - tig0022477:22378-22397 Msa1400820:intron 50.0%
TCCCAGACTCATGTTCCTCT+TGG - tig0022477:22410-22429 Msa1400820:intron 50.0%
! TGGGGTACCTGACAAAGGTA+AGG + tig0022477:22484-22503 None:intergenic 50.0%
AGAGTATGCTGGTCCCTTTG+AGG + tig0022477:22721-22740 None:intergenic 50.0%
ACAGGGATTCTGCATCATGG+AGG - tig0022477:22787-22806 Msa1400820:intron 50.0%
AGCACAAAGGCCAACCTTCA+TGG - tig0022477:22895-22914 Msa1400820:intron 50.0%
TCAGGGGAGATGCATATGGA+TGG + tig0022477:22977-22996 None:intergenic 50.0%
ATGCATCTCCCCTGAGAATG+AGG - tig0022477:22982-23001 Msa1400820:intron 50.0%
AGGCAAAGGCCTCATTCTCA+GGG + tig0022477:22994-23013 None:intergenic 50.0%
AGAATGGACAGCAGAGGCAA+AGG + tig0022477:23008-23027 None:intergenic 50.0%
AACAGTTGCTCATCCACGGA+GGG + tig0022477:23492-23511 None:intergenic 50.0%
AAACAGTTGCTCATCCACGG+AGG + tig0022477:23493-23512 None:intergenic 50.0%
TGCTGTCCCTGGATAGATTG+TGG - tig0022477:23639-23658 Msa1400820:intron 50.0%
! ATTTTCATTGAGAGCGGGCC+TGG - tig0022477:23869-23888 Msa1400820:intron 50.0%
! TTTTCATTGAGAGCGGGCCT+GGG - tig0022477:23870-23889 Msa1400820:intron 50.0%
!! AAACTGTTTAGGCACTGGGG+TGG - tig0022477:24079-24098 Msa1400820:intron 50.0%
! AGGTTTTTGTCAGGGAGAGG+GGG + tig0022477:24314-24333 None:intergenic 50.0%
!!! TTTGTTTTGAAGGTGGGGCC+TGG - tig0022477:24730-24749 Msa1400820:CDS 50.0%
AGCTCATCATCTACCTCACC+AGG + tig0022477:24751-24770 None:intergenic 50.0%
TGGTGAGGTAGATGATGAGC+TGG - tig0022477:24750-24769 Msa1400820:CDS 50.0%
GATGAGCTGGAAGATGAGGT+AGG - tig0022477:24763-24782 Msa1400820:CDS 50.0%
!! CCCCAAAGTATCGACCATCA+AGG + tig0022477:24927-24946 None:intergenic 50.0%
CCAGGAATTTCTCCTGGCAT+TGG + tig0022477:25009-25028 None:intergenic 50.0%
CCAATGCCAGGAGAAATTCC+TGG - tig0022477:25006-25025 Msa1400820:CDS 50.0%
GTGAAGCCAGGAATTTCTCC+TGG + tig0022477:25015-25034 None:intergenic 50.0%
CTGTTCTTCTAGGTGAAGCC+AGG + tig0022477:25027-25046 None:intergenic 50.0%
TTCCCTTCTTCGTCGAGGAG+AGG + tig0022477:19752-19771 None:intergenic 55.0%
!! CAGTAGGTACCGATAGCGGT+AGG - tig0022477:19790-19809 Msa1400820:three_prime_UTR 55.0%
GCGTCGGAGCTTCGAAATGT+TGG - tig0022477:19890-19909 Msa1400820:three_prime_UTR 55.0%
CGGAGCTTCGAAATGTTGGG+TGG - tig0022477:19894-19913 Msa1400820:three_prime_UTR 55.0%
TCTTCTTCGGCGGAAGAAGG+TGG + tig0022477:19939-19958 None:intergenic 55.0%
GCTGGATGACCAGACATTGG+TGG + tig0022477:19970-19989 None:intergenic 55.0%
! GGTGCTGGATGACCAGACAT+TGG + tig0022477:19973-19992 None:intergenic 55.0%
AGAGGAGGGTTTACGGAGAG+TGG + tig0022477:20009-20028 None:intergenic 55.0%
! GATCGAAGAAGGGTATGGGG+AGG + tig0022477:20044-20063 None:intergenic 55.0%
CCTACAAGAGCCGGTTGAGA+TGG + tig0022477:20161-20180 None:intergenic 55.0%
! CCATCTCAACCGGCTCTTGT+AGG - tig0022477:20158-20177 Msa1400820:CDS 55.0%
! AGGAGTACAGTCGACGGTGA+TGG - tig0022477:20178-20197 Msa1400820:CDS 55.0%
! AGTACAGTCGACGGTGATGG+AGG - tig0022477:20181-20200 Msa1400820:CDS 55.0%
!! GGTGATGGAGGAGTACGATC+CGG - tig0022477:20193-20212 Msa1400820:CDS 55.0%
TCGGAGGGAGAAGAAGAGGA+AGG - tig0022477:20241-20260 Msa1400820:CDS 55.0%
TGATGAGGGAGCTGGAGAGA+CGG - tig0022477:20279-20298 Msa1400820:CDS 55.0%
AGGAGGAGAGGGAGAAAGAG+AGG - tig0022477:20312-20331 Msa1400820:CDS 55.0%
GGAGGAGAGGGAGAAAGAGA+GGG - tig0022477:20313-20332 Msa1400820:CDS 55.0%
AGAGGGAGAAAGAGAGGGAG+AGG - tig0022477:20318-20337 Msa1400820:CDS 55.0%
GAGGGAGAAAGAGAGGGAGA+GGG - tig0022477:20319-20338 Msa1400820:CDS 55.0%
CCTTCTCCATGCTTCCTCAC+CGG + tig0022477:20414-20433 None:intergenic 55.0%
! GAAGCATGGAGAAGGCGTGT+GGG - tig0022477:20419-20438 Msa1400820:intron 55.0%
! AAGCATGGAGAAGGCGTGTG+GGG - tig0022477:20420-20439 Msa1400820:intron 55.0%
ATTGGGAAGTCGGAGACGGT+TGG - tig0022477:20524-20543 Msa1400820:intron 55.0%
TTGGGAAGTCGGAGACGGTT+GGG - tig0022477:20525-20544 Msa1400820:intron 55.0%
AAGTCGGAGACGGTTGGGTT+GGG - tig0022477:20530-20549 Msa1400820:intron 55.0%
GACTGCTGCTCAGAGGATGA+TGG - tig0022477:20574-20593 Msa1400820:intron 55.0%
! GGATGATGGCAAAGATGGGG+TGG - tig0022477:20588-20607 Msa1400820:intron 55.0%
ATGGGGTGGAAACAAGGGCA+AGG - tig0022477:20602-20621 Msa1400820:intron 55.0%
TGGGGTGGAAACAAGGGCAA+GGG - tig0022477:20603-20622 Msa1400820:intron 55.0%
TGGAAACAAGGGCAAGGGCT+TGG - tig0022477:20608-20627 Msa1400820:intron 55.0%
GGAAACAAGGGCAAGGGCTT+GGG - tig0022477:20609-20628 Msa1400820:intron 55.0%
GGCTTGGGAAACAGGAGCAA+GGG - tig0022477:20624-20643 Msa1400820:intron 55.0%
!! GAAAACCGATAGACGGGCTG+GGG - tig0022477:20670-20689 Msa1400820:intron 55.0%
GGAAGGCTAACGAACACGTC+CGG + tig0022477:21396-21415 None:intergenic 55.0%
CCAACAGGTTTGGCAGGGAT+AGG + tig0022477:22083-22102 None:intergenic 55.0%
CCTATCCCTGCCAAACCTGT+TGG - tig0022477:22080-22099 Msa1400820:intron 55.0%
GGGATTCTGCATCATGGAGG+AGG - tig0022477:22790-22809 Msa1400820:intron 55.0%
GGCAAAGGCCTCATTCTCAG+GGG + tig0022477:22993-23012 None:intergenic 55.0%
GAGGCAAAGGCCTCATTCTC+AGG + tig0022477:22995-23014 None:intergenic 55.0%
!! GATCACTTTTCCTCCCTCCG+TGG - tig0022477:23476-23495 Msa1400820:intron 55.0%
! TTTTTGTCAGGGAGAGGGGG+TGG + tig0022477:24311-24330 None:intergenic 55.0%
! GCGTGCCACATTTTACGACG+AGG - tig0022477:24957-24976 Msa1400820:CDS 55.0%
TCTTCGGCGGAAGAAGGTGG+AGG + tig0022477:19936-19955 None:intergenic 60.0%
AGGGTTTACGGAGAGTGGCG+GGG + tig0022477:20004-20023 None:intergenic 60.0%
GAGGGTTTACGGAGAGTGGC+GGG + tig0022477:20005-20024 None:intergenic 60.0%
GGAGGGTTTACGGAGAGTGG+CGG + tig0022477:20006-20025 None:intergenic 60.0%
GCAAGAATCGGCTGTGGTGC+AGG + tig0022477:20113-20132 None:intergenic 60.0%
GGCGAAGCAAGAATCGGCTG+TGG + tig0022477:20119-20138 None:intergenic 60.0%
AGCGGAGATGATGAGGGAGC+TGG - tig0022477:20271-20290 Msa1400820:CDS 60.0%
! CCGGTGAGGAAGCATGGAGA+AGG - tig0022477:20411-20430 Msa1400820:intron 60.0%
! GGAAGCATGGAGAAGGCGTG+TGG - tig0022477:20418-20437 Msa1400820:intron 60.0%
! AGAAGGCGTGTGGGGATGAG+TGG - tig0022477:20428-20447 Msa1400820:intron 60.0%
AATCCATCCACACTCCCGGG+AGG + tig0022477:20500-20519 None:intergenic 60.0%
GAAGTCGGAGACGGTTGGGT+TGG - tig0022477:20529-20548 Msa1400820:intron 60.0%
!! GAGACGGTTGGGTTGGGAGT+TGG - tig0022477:20536-20555 Msa1400820:intron 60.0%
!! GTTGGGTTGGGAGTTGGTGC+TGG - tig0022477:20542-20561 Msa1400820:intron 60.0%
!! GGTTGGGAGTTGGTGCTGGT+GGG - tig0022477:20546-20565 Msa1400820:intron 60.0%
GGCAGATGACTGCTGCTCAG+AGG - tig0022477:20567-20586 Msa1400820:intron 60.0%
AGGGCAAGGGCTTGGGAAAC+AGG - tig0022477:20616-20635 Msa1400820:intron 60.0%
GGGCTTGGGAAACAGGAGCA+AGG - tig0022477:20623-20642 Msa1400820:intron 60.0%
GAAAGGAGGTCCAAGTGGGC+TGG - tig0022477:21315-21334 Msa1400820:intron 60.0%
CTAACAGAGGCCAGCCCACT+TGG + tig0022477:21328-21347 None:intergenic 60.0%
TGTCAGGACACCCAACGAGC+TGG + tig0022477:22141-22160 None:intergenic 60.0%
AGTTGCTCATCCACGGAGGG+AGG + tig0022477:23489-23508 None:intergenic 60.0%
TTTGAAGGTGGGGCCTGGTG+AGG - tig0022477:24735-24754 Msa1400820:CDS 60.0%
CGGCGGAAGAAGGTGGAGGT+AGG + tig0022477:19932-19951 None:intergenic 65.0%
!! GAGAGTGGCGGGGGCCATTT+TGG + tig0022477:19994-20013 None:intergenic 65.0%
GGGTTTACGGAGAGTGGCGG+GGG + tig0022477:20003-20022 None:intergenic 65.0%
! TGGAGGAGTACGATCCGGCG+AGG - tig0022477:20198-20217 Msa1400820:CDS 65.0%
TGAGGGAGCTGGAGAGACGG+AGG - tig0022477:20282-20301 Msa1400820:CDS 65.0%
GAGGGAGCTGGAGAGACGGA+GGG - tig0022477:20283-20302 Msa1400820:CDS 65.0%
GAGGGAGGAGGAGGAGGAGA+GGG - tig0022477:20301-20320 Msa1400820:CDS 65.0%
AGGCGTGTGGGGATGAGTGG+AGG - tig0022477:20431-20450 Msa1400820:intron 65.0%
CGTGTGGGGATGAGTGGAGG+AGG - tig0022477:20434-20453 Msa1400820:intron 65.0%
GTGGGGATGAGTGGAGGAGG+TGG - tig0022477:20437-20456 Msa1400820:intron 65.0%
GGGATGAGTGGAGGAGGTGG+TGG - tig0022477:20440-20459 Msa1400820:intron 65.0%
! AGTGGAGGAGGTGGTGGCAG+TGG - tig0022477:20446-20465 Msa1400820:intron 65.0%
! GAGGTGGTGGCAGTGGTGGA+CGG - tig0022477:20453-20472 Msa1400820:intron 65.0%
!! AGGTGGTGGCAGTGGTGGAC+GGG - tig0022477:20454-20473 Msa1400820:intron 65.0%
!! GGGTTGGGAGTTGGTGCTGG+TGG - tig0022477:20545-20564 Msa1400820:intron 65.0%
TTGTCAGGGAGAGGGGGTGG+AGG + tig0022477:24308-24327 None:intergenic 65.0%
!! GGCGGGGGCCATTTTGGTGC+TGG + tig0022477:19988-20007 None:intergenic 70.0%
GGAGCTGGAGAGACGGAGGG+AGG - tig0022477:20286-20305 Msa1400820:CDS 70.0%
GCTGGAGAGACGGAGGGAGG+AGG - tig0022477:20289-20308 Msa1400820:CDS 70.0%
GGAGAGACGGAGGGAGGAGG+AGG - tig0022477:20292-20311 Msa1400820:CDS 70.0%
GAGACGGAGGGAGGAGGAGG+AGG - tig0022477:20295-20314 Msa1400820:CDS 70.0%
GGAGGGAGGAGGAGGAGGAG+AGG - tig0022477:20300-20319 Msa1400820:CDS 70.0%
! GGAGGAGGTGGTGGCAGTGG+TGG - tig0022477:20449-20468 Msa1400820:intron 70.0%
!! GGTGGTGGCAGTGGTGGACG+GGG - tig0022477:20455-20474 Msa1400820:intron 70.0%
TCCACACTCCCGGGAGGCGA+TGG + tig0022477:20494-20513 None:intergenic 70.0%
! TCGCCTCCCGGGAGTGTGGA+TGG - tig0022477:20494-20513 Msa1400820:intron 70.0%
!! GTGGTGGACGGGGTGTGCCG+AGG - tig0022477:20465-20484 Msa1400820:intron 75.0%
CCGGGAGGCGATGGCGACCT+CGG + tig0022477:20485-20504 None:intergenic 75.0%
CCGAGGTCGCCATCGCCTCC+CGG - tig0022477:20482-20501 Msa1400820:intron 75.0%
CGAGGTCGCCATCGCCTCCC+GGG - tig0022477:20483-20502 Msa1400820:intron 75.0%
GCCATCGCCTCCCGGGAGTG+TGG - tig0022477:20490-20509 Msa1400820:intron 75.0%
Chromosome Type Strat End Strand Name
tig0022477 gene 19721 25413 19721 ID=Msa1400820;Name=Msa1400820
tig0022477 mRNA 19721 25413 19721 ID=Msa1400820-mRNA-1;Parent=Msa1400820;Name=Msa1400820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=185|1|1|1|1|1|2|375|392
tig0022477 exon 19721 20392 19721 ID=Msa1400820-mRNA-1:exon:17960;Parent=Msa1400820-mRNA-1
tig0022477 exon 24347 25413 24347 ID=Msa1400820-mRNA-1:exon:17959;Parent=Msa1400820-mRNA-1
tig0022477 five_prime_UTR 25229 25413 25229 ID=Msa1400820-mRNA-1:five_prime_utr;Parent=Msa1400820-mRNA-1
tig0022477 CDS 24347 25228 24347 ID=Msa1400820-mRNA-1:cds;Parent=Msa1400820-mRNA-1
tig0022477 CDS 20096 20392 20096 ID=Msa1400820-mRNA-1:cds;Parent=Msa1400820-mRNA-1
tig0022477 three_prime_UTR 19721 20095 19721 ID=Msa1400820-mRNA-1:three_prime_utr;Parent=Msa1400820-mRNA-1
Gene Sequence

>Msa1400820

ATGTTGGGTGGGTTATACGGAGACCTACCTCCACCTTCTTCCGCCGAAGAAGATAAACCAACCACCAATGTCTGGTCATCCAGCACCAAAATGGCCCCCGCCACTCTCCGTAAACCCTCCTCTTCTCTTTACACACCTCCCCATACCCTTCTTCGATCCCAAAACAAACCTAAAATTGTCAATTCCACCAAAACTATTCTCTCTCCTGCACCACAGCCGATTCTTGCTTCGCCACTCGACGATGTTGTTCAACCATCTCAACCGGCTCTTGTAGGAGTACAGTCGACGGTGATGGAGGAGTACGATCCGGCGAGGCCGAATGATTATGAAGAGTATCGGAGGGAGAAGAAGAGGAAGGCTAGAGAAGCGGAGATGATGAGGGAGCTGGAGAGACGGAGGGAGGAGGAGGAGGAGAGGGAGAAAGAGAGGGAGAGGGAGAGAGAAAGAGAAAGGGAGAGAGATAGAGATAGGGAGAGAGATCAGGGAGATTCGAGATTGAATATTTCCGGTGAGGAAGCATGGAGAAGGCGTGTGGGGATGAGTGGAGGAGGTGGTGGCAGTGGTGGACGGGGTGTGCCGAGGTCGCCATCGCCTCCCGGGAGTGTGGATGGATTTAGTATTGGGAAGTCGGAGACGGTTGGGTTGGGAGTTGGTGCTGGTGGGCAGATGACTGCTGCTCAGAGGATGATGGCAAAGATGGGGTGGAAACAAGGGCAAGGGCTTGGGAAACAGGAGCAAGGGATTACAACTCCGTTGATGGCGAAGAAAACCGATAGACGGGCTGGGGTTATTGTTAATGCCAGTGACAGTAAGTCTGATAAGAAAGTTAAGAGTGTTAACATCAATGGTGTACCTACCAGAGTACTGCTACTTAGAAACATGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAGATGAGGTAGGATCAGAATGTGCCAAGTATGGAACAGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTTCCCACTGACGAAGCAGTAAGAATCTTTGTTCAGTTTGAGAGATCTGAAGAAACAACTAAAGCGCTTGTTGACCTTGATGGTCGATACTTTGGGGGTAGAACAGTGCGTGCCACATTTTACGACGAGGACAAGTTTAGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGCTTCACCTAG
Protein sequence

>Msa1400820

MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPSSSLYTPPHTLLRSQNKPKIVNSTKTILSPAPQPILASPLDDVVQPSQPALVGVQSTVMEEYDPARPNDYEEYRREKKRKAREAEMMRELERRREEEEEREKERERERERERERDRDRERDQGDSRLNISGEEAWRRRVGMSGGGGGSGGRGVPRSPSPPGSVDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKSDKKVKSVNINGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALVDLDGRYFGGRTVRATFYDEDKFSKNELAPMPGEIPGFT*