Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046470 | ABN09776.1 | 100.000 | 57 | 0 | 0 | 1 | 57 | 39 | 95 | 1.61e-35 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046470 | sp|Q9M9L0|APC11_ARATH | 100.000 | 56 | 0 | 0 | 1 | 56 | 28 | 83 | 5.58e-37 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046470 | A0A6S7NHV5 | 96.429 | 56 | 2 | 0 | 1 | 56 | 552 | 607 | 2.94e-38 | 142 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa1046470 | 0.802300 | 5.990510e-49 | -8.615850e-47 |
| Msa0004920 | Msa1046470 | 0.806831 | 6.796074e-50 | -8.615850e-47 |
| Msa0017510 | Msa1046470 | 0.801536 | 8.596188e-49 | -8.615850e-47 |
| Msa0036430 | Msa1046470 | 0.809351 | 1.975020e-50 | -8.615850e-47 |
| Msa0040450 | Msa1046470 | 0.815123 | 1.085923e-51 | -8.615850e-47 |
| Msa0072370 | Msa1046470 | 0.812577 | 3.953495e-51 | -8.615850e-47 |
| Msa0072810 | Msa1046470 | 0.800158 | 1.643039e-48 | -8.615850e-47 |
| Msa0076000 | Msa1046470 | 0.807855 | 4.122801e-50 | -8.615850e-47 |
| Msa0103000 | Msa1046470 | 0.818845 | 1.584642e-52 | -8.615850e-47 |
| Msa0110970 | Msa1046470 | 0.816246 | 6.104017e-52 | -8.615850e-47 |
| Msa0616020 | Msa1046470 | 0.806430 | 8.259246e-50 | -8.615850e-47 |
| Msa0616220 | Msa1046470 | 0.816657 | 4.939673e-52 | -8.615850e-47 |
| Msa0620240 | Msa1046470 | 0.801963 | 7.025311e-49 | -8.615850e-47 |
| Msa0662500 | Msa1046470 | 0.812298 | 4.549781e-51 | -8.615850e-47 |
| Msa0692940 | Msa1046470 | 0.800560 | 1.360912e-48 | -8.615850e-47 |
| Msa0699550 | Msa1046470 | 0.813505 | 2.474749e-51 | -8.615850e-47 |
| Msa0703230 | Msa1046470 | 0.802839 | 4.637964e-49 | -8.615850e-47 |
| Msa0708520 | Msa1046470 | 0.815207 | 1.040620e-51 | -8.615850e-47 |
| Msa0709500 | Msa1046470 | 0.832424 | 9.528024e-56 | -8.615850e-47 |
| Msa0720820 | Msa1046470 | 0.802478 | 5.505318e-49 | -8.615850e-47 |
| Msa0760380 | Msa1046470 | 0.810921 | 9.060868e-51 | -8.615850e-47 |
| Msa0790850 | Msa1046470 | 0.830560 | 2.740975e-55 | -8.615850e-47 |
| Msa0796530 | Msa1046470 | 0.820228 | 7.661885e-53 | -8.615850e-47 |
| Msa0813670 | Msa1046470 | 0.806162 | 9.403852e-50 | -8.615850e-47 |
| Msa0813720 | Msa1046470 | 0.805478 | 1.309186e-49 | -8.615850e-47 |
| Msa0824680 | Msa1046470 | 0.802359 | 5.825524e-49 | -8.615850e-47 |
| Msa0836660 | Msa1046470 | -0.809196 | 2.132603e-50 | -8.615850e-47 |
| Msa0130570 | Msa1046470 | 0.802147 | 6.440065e-49 | -8.615850e-47 |
| Msa0136070 | Msa1046470 | 0.804754 | 1.856165e-49 | -8.615850e-47 |
| Msa0136100 | Msa1046470 | 0.800079 | 1.704962e-48 | -8.615850e-47 |
| Msa0140570 | Msa1046470 | 0.803842 | 2.874261e-49 | -8.615850e-47 |
| Msa0147560 | Msa1046470 | 0.802453 | 5.569074e-49 | -8.615850e-47 |
| Msa0157290 | Msa1046470 | 0.802045 | 6.759593e-49 | -8.615850e-47 |
| Msa0173990 | Msa1046470 | 0.803824 | 2.898601e-49 | -8.615850e-47 |
| Msa0174730 | Msa1046470 | 0.800830 | 1.198778e-48 | -8.615850e-47 |
| Msa0186890 | Msa1046470 | 0.800655 | 1.301893e-48 | -8.615850e-47 |
| Msa0187930 | Msa1046470 | 0.805772 | 1.135861e-49 | -8.615850e-47 |
| Msa0193120 | Msa1046470 | 0.818599 | 1.802434e-52 | -8.615850e-47 |
| Msa0194540 | Msa1046470 | 0.810842 | 9.428047e-51 | -8.615850e-47 |
| Msa0197930 | Msa1046470 | 0.800545 | 1.370842e-48 | -8.615850e-47 |
| Msa0203030 | Msa1046470 | 0.801283 | 9.686925e-49 | -8.615850e-47 |
| Msa0220720 | Msa1046470 | 0.812563 | 3.981582e-51 | -8.615850e-47 |
| Msa0233350 | Msa1046470 | 0.809129 | 2.203799e-50 | -8.615850e-47 |
| Msa0385580 | Msa1046470 | 0.813947 | 1.977934e-51 | -8.615850e-47 |
| Msa0395960 | Msa1046470 | 0.802581 | 5.240775e-49 | -8.615850e-47 |
| Msa0402650 | Msa1046470 | 0.802874 | 4.560781e-49 | -8.615850e-47 |
| Msa0419820 | Msa1046470 | 0.810343 | 1.208337e-50 | -8.615850e-47 |
| Msa1003310 | Msa1046470 | 0.833339 | 5.644662e-56 | -8.615850e-47 |
| Msa1003750 | Msa1046470 | 0.834083 | 3.678211e-56 | -8.615850e-47 |
| Msa1006840 | Msa1046470 | 0.802097 | 6.595053e-49 | -8.615850e-47 |
| Msa1013400 | Msa1046470 | 0.827663 | 1.381369e-54 | -8.615850e-47 |
| Msa1040400 | Msa1046470 | 0.823979 | 1.034385e-53 | -8.615850e-47 |
| Msa1046470 | Msa1066490 | 0.817087 | 3.956118e-52 | -8.615850e-47 |
| Msa1046470 | Msa1081150 | 0.823411 | 1.405586e-53 | -8.615850e-47 |
| Msa1046470 | Msa1082700 | 0.802894 | 4.516986e-49 | -8.615850e-47 |
| Msa1046470 | Msa1093530 | 0.808780 | 2.617697e-50 | -8.615850e-47 |
| Msa1046470 | Msa1104140 | 0.812499 | 4.111321e-51 | -8.615850e-47 |
| Msa1046470 | Msa1125760 | 0.820971 | 5.172073e-53 | -8.615850e-47 |
| Msa1046470 | Msa1126510 | 0.803107 | 4.080897e-49 | -8.615850e-47 |
| Msa1046470 | Msa1127890 | 0.816294 | 5.955170e-52 | -8.615850e-47 |
| Msa1046470 | Msa1133000 | 0.802940 | 4.420172e-49 | -8.615850e-47 |
| Msa1046470 | Msa1139810 | 0.814870 | 1.235946e-51 | -8.615850e-47 |
| Msa1046470 | Msa1165870 | 0.818776 | 1.642939e-52 | -8.615850e-47 |
| Msa1046470 | Msa1171360 | 0.831570 | 1.549206e-55 | -8.615850e-47 |
| Msa1046470 | Msa1187840 | 0.828209 | 1.020723e-54 | -8.615850e-47 |
| Msa1046470 | Msa1207270 | 0.804139 | 2.493761e-49 | -8.615850e-47 |
| Msa1046470 | Msa1218600 | 0.835326 | 1.790622e-56 | -8.615850e-47 |
| Msa1046470 | Msa1237940 | 0.807910 | 4.013412e-50 | -8.615850e-47 |
| Msa1046470 | Msa1252740 | 0.805941 | 1.046713e-49 | -8.615850e-47 |
| Msa1046470 | Msa1255040 | -0.828224 | 1.012744e-54 | -8.615850e-47 |
| Msa1046470 | Msa1257510 | 0.811730 | 6.047479e-51 | -8.615850e-47 |
| Msa1046470 | Msa1295490 | -0.801635 | 8.205894e-49 | -8.615850e-47 |
| Msa1046470 | Msa1316780 | 0.809188 | 2.140688e-50 | -8.615850e-47 |
| Msa1046470 | Msa1316830 | 0.805435 | 1.336664e-49 | -8.615850e-47 |
| Msa1046470 | Msa1351760 | 0.800602 | 1.334747e-48 | -8.615850e-47 |
| Msa1046470 | Msa1356440 | 0.810949 | 8.937505e-51 | -8.615850e-47 |
| Msa1046470 | Msa1379760 | 0.800236 | 1.584171e-48 | -8.615850e-47 |
| Msa1046470 | Msa1385670 | 0.802807 | 4.708176e-49 | -8.615850e-47 |
| Msa1046470 | Msa1387420 | 0.804171 | 2.454678e-49 | -8.615850e-47 |
| Msa1046470 | Msa1397810 | 0.802620 | 5.146467e-49 | -8.615850e-47 |
| Msa1046470 | Msa1424750 | 0.812298 | 4.548532e-51 | -8.615850e-47 |
| Msa1046470 | Msa1448690 | 0.812305 | 4.532557e-51 | -8.615850e-47 |
| Msa0239800 | Msa1046470 | 0.801156 | 1.028460e-48 | -8.615850e-47 |
| Msa0244780 | Msa1046470 | 0.805594 | 1.238207e-49 | -8.615850e-47 |
| Msa0262310 | Msa1046470 | 0.809891 | 1.512329e-50 | -8.615850e-47 |
| Msa0262340 | Msa1046470 | 0.808866 | 2.509699e-50 | -8.615850e-47 |
| Msa0264570 | Msa1046470 | 0.813070 | 3.083691e-51 | -8.615850e-47 |
| Msa0268130 | Msa1046470 | 0.813682 | 2.261723e-51 | -8.615850e-47 |
| Msa0279790 | Msa1046470 | 0.800417 | 1.455513e-48 | -8.615850e-47 |
| Msa0298990 | Msa1046470 | 0.811217 | 7.817433e-51 | -8.615850e-47 |
| Msa0300120 | Msa1046470 | 0.803963 | 2.712514e-49 | -8.615850e-47 |
| Msa0339250 | Msa1046470 | 0.802417 | 5.664936e-49 | -8.615850e-47 |
| Msa0483860 | Msa1046470 | 0.930883 | 8.544797e-94 | -8.615850e-47 |
| Msa0509390 | Msa1046470 | 0.803067 | 4.159374e-49 | -8.615850e-47 |
| Msa0541860 | Msa1046470 | 0.804284 | 2.325619e-49 | -8.615850e-47 |
| Msa0876200 | Msa1046470 | 0.835452 | 1.664451e-56 | -8.615850e-47 |
| Msa0880140 | Msa1046470 | 0.802963 | 4.371883e-49 | -8.615850e-47 |
| Msa0902760 | Msa1046470 | 0.810528 | 1.102070e-50 | -8.615850e-47 |
| Msa0968590 | Msa1046470 | 0.809350 | 1.976433e-50 | -8.615850e-47 |
| Msa0970030 | Msa1046470 | 0.807609 | 4.648851e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046470 | MtrunA17_Chr4g0001531 | 100.000 | 57 | 0 | 0 | 1 | 57 | 1 | 57 | 7.78e-39 | 122 |
| Msa1046470 | MtrunA17_Chr7g0214441 | 100.000 | 57 | 0 | 0 | 1 | 57 | 1 | 57 | 7.78e-39 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046470 | AT3G05870.1 | 100.000 | 56 | 0 | 0 | 1 | 56 | 31 | 86 | 5.19e-38 | 120 |
| Msa1046470 | AT3G05870.2 | 100.000 | 56 | 0 | 0 | 1 | 56 | 31 | 86 | 5.19e-38 | 120 |
| Msa1046470 | AT3G05870.6 | 100.000 | 56 | 0 | 0 | 1 | 56 | 31 | 86 | 5.19e-38 | 120 |
| Msa1046470 | AT3G05870.4 | 100.000 | 56 | 0 | 0 | 1 | 56 | 34 | 89 | 6.68e-38 | 120 |
| Msa1046470 | AT3G05870.3 | 100.000 | 56 | 0 | 0 | 1 | 56 | 34 | 89 | 6.68e-38 | 120 |
| Msa1046470 | AT3G05870.5 | 100.000 | 56 | 0 | 0 | 1 | 56 | 34 | 89 | 6.68e-38 | 120 |
| Msa1046470 | AT3G05870.7 | 100.000 | 56 | 0 | 0 | 1 | 56 | 22 | 77 | 9.44e-38 | 120 |
Find 40 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAATTTGATCATTTCTTT+TGG | 0.263070 | 7_2:-6937297 | Msa1046470:three_prime_UTR |
| TGAAATTAGAGTTTCTAAAT+TGG | 0.278981 | 7_2:-6937217 | Msa1046470:three_prime_UTR |
| CGTCGGGAATGGCAATTTAA+AGG | 0.290239 | 7_2:-6937413 | Msa1046470:CDS |
| ATTTACATTGTATCTTGAAA+TGG | 0.311304 | 7_2:-6937475 | Msa1046470:CDS |
| CTGATAATGAAGTTAGGGTT+TGG | 0.352667 | 7_2:+6939557 | None:intergenic |
| GATGGCATGTTGTTGCTTCA+TGG | 0.372099 | 7_2:-6939238 | Msa1046470:five_prime_UTR |
| ATGTTGTTGCTTCATGGACT+TGG | 0.375530 | 7_2:-6939232 | Msa1046470:five_prime_UTR |
| TGTCCTGATTGTAAACTTCC+TGG | 0.394301 | 7_2:-6939158 | Msa1046470:CDS |
| ATACATACGTTTGAATTTGC+GGG | 0.399310 | 7_2:-6939659 | Msa1046470:five_prime_UTR |
| AAAGAAGATTTGAATTGAAA+AGG | 0.400354 | 7_2:+6939583 | None:intergenic |
| CTATTGGATTGGATTTCTGC+TGG | 0.407759 | 7_2:-6939436 | Msa1046470:five_prime_UTR |
| TTTACATTGTATCTTGAAAT+GGG | 0.412787 | 7_2:-6937474 | Msa1046470:CDS |
| TAATATCTCCATTGTTTCCA+TGG | 0.415568 | 7_2:-6937243 | Msa1046470:three_prime_UTR |
| TATACATACGTTTGAATTTG+CGG | 0.415740 | 7_2:-6939660 | Msa1046470:five_prime_UTR |
| ATTTGTAGGATGGCCTTTGA+TGG | 0.417636 | 7_2:-6939185 | Msa1046470:exon |
| GCCATTCCCGACGACACATT+GGG | 0.449214 | 7_2:+6937423 | None:intergenic |
| GTCCTGATTGTAAACTTCCT+GGG | 0.462403 | 7_2:-6939157 | Msa1046470:CDS |
| AAACTCTAATTTCAATCCCA+TGG | 0.474150 | 7_2:+6937226 | None:intergenic |
| ACTAGACAAGACAAAGGAAA+AGG | 0.484810 | 7_2:-6939636 | Msa1046470:five_prime_UTR |
| ATGAAACATGTGGAATTTGT+AGG | 0.488299 | 7_2:-6939199 | Msa1046470:five_prime_UTR |
| TTTGAAGCAAAAGCACAAAC+AGG | 0.490100 | 7_2:+6939487 | None:intergenic |
| TGCCATTCCCGACGACACAT+TGG | 0.494237 | 7_2:+6937422 | None:intergenic |
| GCCCAATGTGTCGTCGGGAA+TGG | 0.498823 | 7_2:-6937424 | Msa1046470:CDS |
| TGTTGTTGCTTCATGGACTT+GGG | 0.505473 | 7_2:-6939231 | Msa1046470:five_prime_UTR |
| GGATGTATTGCTTATGAATG+AGG | 0.511564 | 7_2:-6937276 | Msa1046470:three_prime_UTR |
| AATATCTCCATTGTTTCCAT+GGG | 0.512610 | 7_2:-6937242 | Msa1046470:three_prime_UTR |
| CACATTGCCCAATGTGTCGT+CGG | 0.513658 | 7_2:-6937430 | Msa1046470:CDS |
| TCCCCAGGAAGTTTACAATC+AGG | 0.518100 | 7_2:+6939155 | None:intergenic |
| CATTGGGCAATGTGCTTGTG+AGG | 0.523053 | 7_2:+6937439 | None:intergenic |
| TTTCAATCCCATGGAAACAA+TGG | 0.523838 | 7_2:+6937235 | None:intergenic |
| ACATTGCCCAATGTGTCGTC+GGG | 0.540781 | 7_2:-6937429 | Msa1046470:CDS |
| TTCATGGACTTGGGATGCAC+AGG | 0.541212 | 7_2:-6939222 | Msa1046470:five_prime_UTR |
| GATTTGAATTGAAAAGGAGA+AGG | 0.548938 | 7_2:+6939589 | None:intergenic |
| TCCTGATTGTAAACTTCCTG+GGG | 0.574605 | 7_2:-6939156 | Msa1046470:CDS |
| CTGAGTGGACAGTCATCCCC+AGG | 0.578584 | 7_2:+6939140 | None:intergenic |
| ATCAGGACAGCATCCATCAA+AGG | 0.590910 | 7_2:+6939172 | None:intergenic |
| CTAGACAAGACAAAGGAAAA+GGG | 0.599308 | 7_2:-6939635 | Msa1046470:five_prime_UTR |
| TGCGGGACTAGACAAGACAA+AGG | 0.697609 | 7_2:-6939642 | Msa1046470:five_prime_UTR |
| AACATGTGGAATTTGTAGGA+TGG | 0.713439 | 7_2:-6939195 | Msa1046470:exon |
| GATGCACAGGATGAAACATG+TGG | 0.727134 | 7_2:-6939209 | Msa1046470:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAACTAATGAATAAATATT+AGG | + | chr7_2:6937521-6937540 | None:intergenic | 15.0% |
| !! | TCATTCAATAAAATAAACAA+TGG | + | chr7_2:6938162-6938181 | None:intergenic | 15.0% |
| !! | TTATCTAAATGTTAAAACAA+AGG | + | chr7_2:6938188-6938207 | None:intergenic | 15.0% |
| !! | AATATATTATTTGATATGTC+AGG | + | chr7_2:6939249-6939268 | None:intergenic | 15.0% |
| !! | AAAGAAGATTTGAATTGAAA+AGG | + | chr7_2:6937240-6937259 | None:intergenic | 20.0% |
| !!! | ATTTTCTGATAATGAAGTTA+GGG | + | chr7_2:6937271-6937290 | None:intergenic | 20.0% |
| !!! | AATAAATTAAAAGCACAAAC+AGG | + | chr7_2:6937820-6937839 | None:intergenic | 20.0% |
| !! | TTGTTTGTATAAAGTGAAAA+GGG | + | chr7_2:6937991-6938010 | None:intergenic | 20.0% |
| !! | ATTGTTTGTATAAAGTGAAA+AGG | + | chr7_2:6937992-6938011 | None:intergenic | 20.0% |
| !! | TAAAATAGTAAACTCTCATT+TGG | - | chr7_2:6938046-6938065 | Msa1046470:intron | 20.0% |
| !! | AGAAGAATCAACATAAATTT+CGG | + | chr7_2:6938552-6938571 | None:intergenic | 20.0% |
| !! | TACATTCAGTAAAATTAGAA+AGG | + | chr7_2:6938901-6938920 | None:intergenic | 20.0% |
| !! | ATTTACATTGTATCTTGAAA+TGG | - | chr7_2:6939345-6939364 | Msa1046470:intron | 20.0% |
| !! | TTTACATTGTATCTTGAAAT+GGG | - | chr7_2:6939346-6939365 | Msa1046470:intron | 20.0% |
| !!! | CAATGTAATTTTGTTTTTCA+TGG | - | chr7_2:6939446-6939465 | Msa1046470:five_prime_UTR | 20.0% |
| !!! | AAGTAACTAAGATCTTTTTA+AGG | - | chr7_2:6939496-6939515 | Msa1046470:five_prime_UTR | 20.0% |
| !!! | AGTAACTAAGATCTTTTTAA+GGG | - | chr7_2:6939497-6939516 | Msa1046470:five_prime_UTR | 20.0% |
| !!! | TGTAATTTGATCATTTCTTT+TGG | - | chr7_2:6939523-6939542 | Msa1046470:five_prime_UTR | 20.0% |
| !! | TGAAATTAGAGTTTCTAAAT+TGG | - | chr7_2:6939603-6939622 | Msa1046470:five_prime_UTR | 20.0% |
| !!! | ATATATTTTTTCATCCTTTG+TGG | + | chr7_2:6939645-6939664 | None:intergenic | 20.0% |
| ! | TATACATACGTTTGAATTTG+CGG | - | chr7_2:6937160-6937179 | Msa1046470:three_prime_UTR | 25.0% |
| !!! | CATTTTCTGATAATGAAGTT+AGG | + | chr7_2:6937272-6937291 | None:intergenic | 25.0% |
| ! | ATCTCTAACTAACTTTATAC+AGG | - | chr7_2:6937423-6937442 | Msa1046470:CDS | 25.0% |
| !!! | AATATTAGGTTGATTTCACT+AGG | + | chr7_2:6937507-6937526 | None:intergenic | 25.0% |
| ! | TCAGTAAGTTACATTATCTT+GGG | - | chr7_2:6937699-6937718 | Msa1046470:intron | 25.0% |
| ! | GTCATTGAAATATGTTGAAA+TGG | - | chr7_2:6937899-6937918 | Msa1046470:intron | 25.0% |
| ! | TGAAAAGGGTTAATTCTTAT+TGG | + | chr7_2:6937977-6937996 | None:intergenic | 25.0% |
| ! | TCATGGTAACATATATATCA+CGG | + | chr7_2:6938247-6938266 | None:intergenic | 25.0% |
| ! | ACTAATTTCATCAATATTCC+AGG | - | chr7_2:6938400-6938419 | Msa1046470:intron | 25.0% |
| ! | AACATTCTTCTTAACAGAAT+AGG | - | chr7_2:6938503-6938522 | Msa1046470:intron | 25.0% |
| ! | AATGGATGAGATACTTTAAA+GGG | + | chr7_2:6938602-6938621 | None:intergenic | 25.0% |
| ! | AAATGGATGAGATACTTTAA+AGG | + | chr7_2:6938603-6938622 | None:intergenic | 25.0% |
| !!! | TAAAGTATCTCATCCATTTT+TGG | - | chr7_2:6938604-6938623 | Msa1046470:intron | 25.0% |
| ! | TTTACCACGTCATTAATATA+TGG | - | chr7_2:6938684-6938703 | Msa1046470:intron | 25.0% |
| ! | TTACCACGTCATTAATATAT+GGG | - | chr7_2:6938685-6938704 | Msa1046470:intron | 25.0% |
| ! | ATACCTATAAACAACATTTG+TGG | - | chr7_2:6938932-6938951 | Msa1046470:intron | 25.0% |
| !! | AAACCACAAATGTTGTTTAT+AGG | + | chr7_2:6938938-6938957 | None:intergenic | 25.0% |
| !! | TTTATAAAGCTTTATGCTCA+AGG | - | chr7_2:6939029-6939048 | Msa1046470:intron | 25.0% |
| !!! | CATGATTGAGAATTTTTCAA+GGG | - | chr7_2:6939070-6939089 | Msa1046470:intron | 25.0% |
| !!! | TTTGTTTTTCATGGAAAACT+AGG | - | chr7_2:6939455-6939474 | Msa1046470:five_prime_UTR | 25.0% |
| !!! | TTGTTTTTCATGGAAAACTA+GGG | - | chr7_2:6939456-6939475 | Msa1046470:five_prime_UTR | 25.0% |
| ATACATACGTTTGAATTTGC+GGG | - | chr7_2:6937161-6937180 | Msa1046470:three_prime_UTR | 30.0% | |
| GATTTGAATTGAAAAGGAGA+AGG | + | chr7_2:6937234-6937253 | None:intergenic | 30.0% | |
| GGTTGAATGCAAAAATGAAA+AGG | + | chr7_2:6937315-6937334 | None:intergenic | 30.0% | |
| !! | TGACTTAGTTTTCTCTCTAT+TGG | - | chr7_2:6937368-6937387 | Msa1046470:three_prime_UTR | 30.0% |
| ! | TAGTTTTCTCTCTATTGGAT+TGG | - | chr7_2:6937373-6937392 | Msa1046470:three_prime_UTR | 30.0% |
| CTAACTTTATACAGGTTGTT+TGG | - | chr7_2:6937431-6937450 | Msa1046470:CDS | 30.0% | |
| TCTCTTATCTCAAATGTAGA+TGG | - | chr7_2:6937564-6937583 | Msa1046470:intron | 30.0% | |
| ATGAAACATGTGGAATTTGT+AGG | - | chr7_2:6937621-6937640 | Msa1046470:intron | 30.0% | |
| AGATAATGTAACTTACTGAG+TGG | + | chr7_2:6937698-6937717 | None:intergenic | 30.0% | |
| CTCAGTAAGTTACATTATCT+TGG | - | chr7_2:6937698-6937717 | Msa1046470:intron | 30.0% | |
| ATTATCTTGGGATTTGTCTT+TGG | - | chr7_2:6937711-6937730 | Msa1046470:intron | 30.0% | |
| AATTCAGCACAATAGAAAAG+TGG | + | chr7_2:6937872-6937891 | None:intergenic | 30.0% | |
| !! | CTTATAAGAGTGTTATGAAG+TGG | - | chr7_2:6938023-6938042 | Msa1046470:intron | 30.0% |
| TAGTAAACTCTCATTTGGAT+TGG | - | chr7_2:6938051-6938070 | Msa1046470:intron | 30.0% | |
| ATGGAATTTAACAACACTTC+AGG | + | chr7_2:6938143-6938162 | None:intergenic | 30.0% | |
| AACATATATATCACGGTAGT+TGG | + | chr7_2:6938240-6938259 | None:intergenic | 30.0% | |
| ACAATTGCATGATAGTTTCA+TGG | + | chr7_2:6938264-6938283 | None:intergenic | 30.0% | |
| AAATAGATGCTGTAAAAAGC+AGG | - | chr7_2:6938315-6938334 | Msa1046470:intron | 30.0% | |
| AATAGATGCTGTAAAAAGCA+GGG | - | chr7_2:6938316-6938335 | Msa1046470:intron | 30.0% | |
| ! | GTACTTATTGGTTATGTTGT+AGG | + | chr7_2:6938460-6938479 | None:intergenic | 30.0% |
| GAACAAAATTAGGCCAAAAA+TGG | + | chr7_2:6938620-6938639 | None:intergenic | 30.0% | |
| AAACCCATATATTAATGACG+TGG | + | chr7_2:6938691-6938710 | None:intergenic | 30.0% | |
| !!! | GATTTTTAGTTGAAACCAGT+TGG | + | chr7_2:6938754-6938773 | None:intergenic | 30.0% |
| ! | AATGTTGTTTATAGGTATCC+AGG | + | chr7_2:6938930-6938949 | None:intergenic | 30.0% |
| ! | GCATGATTGAGAATTTTTCA+AGG | - | chr7_2:6939069-6939088 | Msa1046470:intron | 30.0% |
| TAATATCTCCATTGTTTCCA+TGG | - | chr7_2:6939577-6939596 | Msa1046470:five_prime_UTR | 30.0% | |
| AATATCTCCATTGTTTCCAT+GGG | - | chr7_2:6939578-6939597 | Msa1046470:five_prime_UTR | 30.0% | |
| AAACTCTAATTTCAATCCCA+TGG | + | chr7_2:6939597-6939616 | None:intergenic | 30.0% | |
| ACTAGACAAGACAAAGGAAA+AGG | - | chr7_2:6937184-6937203 | Msa1046470:three_prime_UTR | 35.0% | |
| CTAGACAAGACAAAGGAAAA+GGG | - | chr7_2:6937185-6937204 | Msa1046470:three_prime_UTR | 35.0% | |
| ! | CTGATAATGAAGTTAGGGTT+TGG | + | chr7_2:6937266-6937285 | None:intergenic | 35.0% |
| ! | TTTGAAGCAAAAGCACAAAC+AGG | + | chr7_2:6937336-6937355 | None:intergenic | 35.0% |
| AACATGTGGAATTTGTAGGA+TGG | - | chr7_2:6937625-6937644 | Msa1046470:intron | 35.0% | |
| CAATAGAAAAGTGGACAAAC+AGG | + | chr7_2:6937863-6937882 | None:intergenic | 35.0% | |
| ATAGATGCTGTAAAAAGCAG+GGG | - | chr7_2:6938317-6938336 | Msa1046470:intron | 35.0% | |
| CCACAAGATTGTGTACTTAT+TGG | + | chr7_2:6938472-6938491 | None:intergenic | 35.0% | |
| CCAATAAGTACACAATCTTG+TGG | - | chr7_2:6938469-6938488 | Msa1046470:intron | 35.0% | |
| !! | CTTCTCTAAGATGACTATGT+TGG | - | chr7_2:6938567-6938586 | Msa1046470:intron | 35.0% |
| GAGTCAAGAGGAACAAAATT+AGG | + | chr7_2:6938630-6938649 | None:intergenic | 35.0% | |
| TTTCTCACATAAGAGTCAAG+AGG | + | chr7_2:6938642-6938661 | None:intergenic | 35.0% | |
| ! | CTGATTGCATGATAGTGTAA+TGG | + | chr7_2:6938731-6938750 | None:intergenic | 35.0% |
| AGCTCAAAAGGCAATAAAAG+GGG | + | chr7_2:6938847-6938866 | None:intergenic | 35.0% | |
| GAGCTCAAAAGGCAATAAAA+GGG | + | chr7_2:6938848-6938867 | None:intergenic | 35.0% | |
| AGAGCTCAAAAGGCAATAAA+AGG | + | chr7_2:6938849-6938868 | None:intergenic | 35.0% | |
| TTACTGAATGTAGATAAGCC+TGG | - | chr7_2:6938909-6938928 | Msa1046470:intron | 35.0% | |
| TGTGTTATCACTGACATTCA+TGG | - | chr7_2:6939000-6939019 | Msa1046470:intron | 35.0% | |
| GTGTTATCACTGACATTCAT+GGG | - | chr7_2:6939001-6939020 | Msa1046470:intron | 35.0% | |
| ! | ATGTATTGATGCAATGTTCC+GGG | + | chr7_2:6939179-6939198 | None:intergenic | 35.0% |
| ! | GATGTATTGATGCAATGTTC+CGG | + | chr7_2:6939180-6939199 | None:intergenic | 35.0% |
| GGATGTATTGCTTATGAATG+AGG | - | chr7_2:6939544-6939563 | Msa1046470:five_prime_UTR | 35.0% | |
| TTTCAATCCCATGGAAACAA+TGG | + | chr7_2:6939588-6939607 | None:intergenic | 35.0% | |
| !! | CATGTTTGTTTTCTCCACAA+AGG | - | chr7_2:6939628-6939647 | Msa1046470:five_prime_UTR | 35.0% |
| ! | CTATTGGATTGGATTTCTGC+TGG | - | chr7_2:6937384-6937403 | Msa1046470:three_prime_UTR | 40.0% |
| CTTTATACAGGTTGTTTGGC+TGG | - | chr7_2:6937435-6937454 | Msa1046470:CDS | 40.0% | |
| ! | ATGTTGTTGCTTCATGGACT+TGG | - | chr7_2:6937588-6937607 | Msa1046470:intron | 40.0% |
| ! | TGTTGTTGCTTCATGGACTT+GGG | - | chr7_2:6937589-6937608 | Msa1046470:intron | 40.0% |
| ATTTGTAGGATGGCCTTTGA+TGG | - | chr7_2:6937635-6937654 | Msa1046470:intron | 40.0% | |
| TGTCCTGATTGTAAACTTCC+TGG | - | chr7_2:6937662-6937681 | Msa1046470:intron | 40.0% | |
| GTCCTGATTGTAAACTTCCT+GGG | - | chr7_2:6937663-6937682 | Msa1046470:intron | 40.0% | |
| TCCTGATTGTAAACTTCCTG+GGG | - | chr7_2:6937664-6937683 | Msa1046470:intron | 40.0% | |
| CTGAGCTGAAGAAAAGTAGT+AGG | - | chr7_2:6938348-6938367 | Msa1046470:intron | 40.0% | |
| CTGCATGTAAAGAGCTCAAA+AGG | + | chr7_2:6938859-6938878 | None:intergenic | 40.0% | |
| ! | CTTTTGAGCTCTTTACATGC+AGG | - | chr7_2:6938857-6938876 | Msa1046470:intron | 40.0% |
| AAAGGAGGAAGACATCAAAG+TGG | + | chr7_2:6939155-6939174 | None:intergenic | 40.0% | |
| ! | TGTATTGATGCAATGTTCCG+GGG | + | chr7_2:6939178-6939197 | None:intergenic | 40.0% |
| ! | AAACTGCACATAGTGGGAAA+AGG | + | chr7_2:6939301-6939320 | None:intergenic | 40.0% |
| ! | TTTTCCCACTATGTGCAGTT+TGG | - | chr7_2:6939300-6939319 | Msa1046470:intron | 40.0% |
| TTTCCCACTATGTGCAGTTT+GGG | - | chr7_2:6939301-6939320 | Msa1046470:intron | 40.0% | |
| ! | GATGGCATGTTGTTGCTTCA+TGG | - | chr7_2:6937582-6937601 | Msa1046470:intron | 45.0% |
| GATGCACAGGATGAAACATG+TGG | - | chr7_2:6937611-6937630 | Msa1046470:intron | 45.0% | |
| ATCAGGACAGCATCCATCAA+AGG | + | chr7_2:6937651-6937670 | None:intergenic | 45.0% | |
| TCCCCAGGAAGTTTACAATC+AGG | + | chr7_2:6937668-6937687 | None:intergenic | 45.0% | |
| TTGACTGAGACGTGGAACAA+AGG | + | chr7_2:6938426-6938445 | None:intergenic | 45.0% | |
| !! | ATATCGACTTGACTGAGACG+TGG | + | chr7_2:6938434-6938453 | None:intergenic | 45.0% |
| CGTCTCAGTCAAGTCGATAT+AGG | - | chr7_2:6938434-6938453 | Msa1046470:intron | 45.0% | |
| CTATCATGCAATCAGCCAAC+TGG | - | chr7_2:6938736-6938755 | Msa1046470:intron | 45.0% | |
| AGGGGAACTCATTGTGTACA+AGG | + | chr7_2:6938829-6938848 | None:intergenic | 45.0% | |
| TTCCCACTATGTGCAGTTTG+GGG | - | chr7_2:6939302-6939321 | Msa1046470:intron | 45.0% | |
| CGTCGGGAATGGCAATTTAA+AGG | - | chr7_2:6939407-6939426 | Msa1046470:intron | 45.0% | |
| TGCGGGACTAGACAAGACAA+AGG | - | chr7_2:6937178-6937197 | Msa1046470:three_prime_UTR | 50.0% | |
| TACAGGTTGTTTGGCTGGTG+TGG | - | chr7_2:6937440-6937459 | Msa1046470:CDS | 50.0% | |
| TTGTTTGGCTGGTGTGGTTC+TGG | - | chr7_2:6937446-6937465 | Msa1046470:CDS | 50.0% | |
| TTCATGGACTTGGGATGCAC+AGG | - | chr7_2:6937598-6937617 | Msa1046470:intron | 50.0% | |
| TGATGTCTTCCTCCTTTCCC+CGG | - | chr7_2:6939158-6939177 | Msa1046470:CDS | 50.0% | |
| TGATGCAATGTTCCGGGGAA+AGG | + | chr7_2:6939173-6939192 | None:intergenic | 50.0% | |
| CACCCCAAACTGCACATAGT+GGG | + | chr7_2:6939307-6939326 | None:intergenic | 50.0% | |
| CATTGGGCAATGTGCTTGTG+AGG | + | chr7_2:6939384-6939403 | None:intergenic | 50.0% | |
| CACATTGCCCAATGTGTCGT+CGG | - | chr7_2:6939390-6939409 | Msa1046470:intron | 50.0% | |
| ACATTGCCCAATGTGTCGTC+GGG | - | chr7_2:6939391-6939410 | Msa1046470:intron | 50.0% | |
| TGAGACGTGGAACAAAGGCC+TGG | + | chr7_2:6938421-6938440 | None:intergenic | 55.0% | |
| TGCAATGTTCCGGGGAAAGG+AGG | + | chr7_2:6939170-6939189 | None:intergenic | 55.0% | |
| GCACCCCAAACTGCACATAG+TGG | + | chr7_2:6939308-6939327 | None:intergenic | 55.0% | |
| GCCATTCCCGACGACACATT+GGG | + | chr7_2:6939400-6939419 | None:intergenic | 55.0% | |
| TGCCATTCCCGACGACACAT+TGG | + | chr7_2:6939401-6939420 | None:intergenic | 55.0% | |
| CTGAGTGGACAGTCATCCCC+AGG | + | chr7_2:6937683-6937702 | None:intergenic | 60.0% | |
| GCCCAATGTGTCGTCGGGAA+TGG | - | chr7_2:6939396-6939415 | Msa1046470:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 6937160 | 6939682 | 6937160 | ID=Msa1046470;Name=Msa1046470 |
| chr7_2 | mRNA | 6937160 | 6939682 | 6937160 | ID=Msa1046470-mRNA-1;Parent=Msa1046470;Name=Msa1046470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=317|1|1|1|0.5|0.33|3|249|57 |
| chr7_2 | exon | 6937160 | 6937524 | 6937160 | ID=Msa1046470-mRNA-1:exon:1682;Parent=Msa1046470-mRNA-1 |
| chr7_2 | exon | 6939141 | 6939259 | 6939141 | ID=Msa1046470-mRNA-1:exon:1681;Parent=Msa1046470-mRNA-1 |
| chr7_2 | exon | 6939427 | 6939682 | 6939427 | ID=Msa1046470-mRNA-1:exon:1680;Parent=Msa1046470-mRNA-1 |
| chr7_2 | five_prime_UTR | 6939427 | 6939682 | 6939427 | ID=Msa1046470-mRNA-1:five_prime_utr;Parent=Msa1046470-mRNA-1 |
| chr7_2 | five_prime_UTR | 6939199 | 6939259 | 6939199 | ID=Msa1046470-mRNA-1:five_prime_utr;Parent=Msa1046470-mRNA-1 |
| chr7_2 | CDS | 6939141 | 6939198 | 6939141 | ID=Msa1046470-mRNA-1:cds;Parent=Msa1046470-mRNA-1 |
| chr7_2 | CDS | 6937409 | 6937524 | 6937409 | ID=Msa1046470-mRNA-1:cds;Parent=Msa1046470-mRNA-1 |
| chr7_2 | three_prime_UTR | 6937160 | 6937408 | 6937160 | ID=Msa1046470-mRNA-1:three_prime_utr;Parent=Msa1046470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
