Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234680 | XP_003627378.2 | 91.057 | 246 | 6 | 2 | 1 | 246 | 1 | 230 | 7.74e-158 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234680 | sp|Q9LQI7|CIA30_ARATH | 65.975 | 241 | 65 | 3 | 1 | 240 | 1 | 225 | 9.62e-115 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234680 | G7L8D3 | 91.057 | 246 | 6 | 2 | 1 | 246 | 1 | 230 | 3.70e-158 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa1234680 | 0.811791 | 5.867638e-51 | -8.615850e-47 |
| Msa0004950 | Msa1234680 | 0.820201 | 7.771831e-53 | -8.615850e-47 |
| Msa0004980 | Msa1234680 | 0.801858 | 7.382757e-49 | -8.615850e-47 |
| Msa0032260 | Msa1234680 | 0.807362 | 5.246430e-50 | -8.615850e-47 |
| Msa0052610 | Msa1234680 | 0.821641 | 3.624891e-53 | -8.615850e-47 |
| Msa0074320 | Msa1234680 | 0.819222 | 1.301000e-52 | -8.615850e-47 |
| Msa0076000 | Msa1234680 | 0.800582 | 1.346866e-48 | -8.615850e-47 |
| Msa0082280 | Msa1234680 | 0.821933 | 3.101995e-53 | -8.615850e-47 |
| Msa0609450 | Msa1234680 | 0.804384 | 2.216443e-49 | -8.615850e-47 |
| Msa0620990 | Msa1234680 | 0.808548 | 2.933956e-50 | -8.615850e-47 |
| Msa0631250 | Msa1234680 | 0.800394 | 1.471600e-48 | -8.615850e-47 |
| Msa0687630 | Msa1234680 | 0.831766 | 1.385561e-55 | -8.615850e-47 |
| Msa0692080 | Msa1234680 | 0.823666 | 1.225158e-53 | -8.615850e-47 |
| Msa0703230 | Msa1234680 | 0.833265 | 5.890567e-56 | -8.615850e-47 |
| Msa0705040 | Msa1234680 | 0.810525 | 1.103612e-50 | -8.615850e-47 |
| Msa0709780 | Msa1234680 | 0.800992 | 1.110833e-48 | -8.615850e-47 |
| Msa0747700 | Msa1234680 | 0.808581 | 2.886683e-50 | -8.615850e-47 |
| Msa0750920 | Msa1234680 | 0.802519 | 5.399399e-49 | -8.615850e-47 |
| Msa0824640 | Msa1234680 | 0.813953 | 1.971478e-51 | -8.615850e-47 |
| Msa0127310 | Msa1234680 | 0.809593 | 1.752550e-50 | -8.615850e-47 |
| Msa0138920 | Msa1234680 | 0.827227 | 1.757283e-54 | -8.615850e-47 |
| Msa0165950 | Msa1234680 | 0.803592 | 3.238529e-49 | -8.615850e-47 |
| Msa0167480 | Msa1234680 | 0.827752 | 1.315033e-54 | -8.615850e-47 |
| Msa0174770 | Msa1234680 | 0.817498 | 3.196996e-52 | -8.615850e-47 |
| Msa0180020 | Msa1234680 | 0.805914 | 1.060728e-49 | -8.615850e-47 |
| Msa0181610 | Msa1234680 | 0.804224 | 2.394140e-49 | -8.615850e-47 |
| Msa0186890 | Msa1234680 | 0.832675 | 8.257836e-56 | -8.615850e-47 |
| Msa0187690 | Msa1234680 | 0.825007 | 5.927954e-54 | -8.615850e-47 |
| Msa0187930 | Msa1234680 | 0.835839 | 1.328324e-56 | -8.615850e-47 |
| Msa0194540 | Msa1234680 | 0.836366 | 9.758686e-57 | -8.615850e-47 |
| Msa0199690 | Msa1234680 | 0.804039 | 2.615453e-49 | -8.615850e-47 |
| Msa1227690 | Msa1234680 | 0.830585 | 2.702858e-55 | -8.615850e-47 |
| Msa1234680 | Msa1234740 | 0.838611 | 2.593989e-57 | -8.615850e-47 |
| Msa1234680 | Msa1258710 | 0.802550 | 5.319701e-49 | -8.615850e-47 |
| Msa1234680 | Msa1270690 | 0.802366 | 5.803741e-49 | -8.615850e-47 |
| Msa1234680 | Msa1276930 | 0.857195 | 1.926295e-62 | -8.615850e-47 |
| Msa1234680 | Msa1281190 | 0.807494 | 4.918205e-50 | -8.615850e-47 |
| Msa1234680 | Msa1292830 | 0.802879 | 4.549126e-49 | -8.615850e-47 |
| Msa1234680 | Msa1306990 | 0.806515 | 7.923508e-50 | -8.615850e-47 |
| Msa1234680 | Msa1307950 | 0.821433 | 4.048493e-53 | -8.615850e-47 |
| Msa1234680 | Msa1310690 | 0.813825 | 2.103498e-51 | -8.615850e-47 |
| Msa1234680 | Msa1315100 | 0.863649 | 2.141572e-64 | -8.615850e-47 |
| Msa1234680 | Msa1316830 | 0.802073 | 6.671072e-49 | -8.615850e-47 |
| Msa1234680 | Msa1349570 | 0.804180 | 2.445117e-49 | -8.615850e-47 |
| Msa1234680 | Msa1363330 | 0.846205 | 2.514312e-59 | -8.615850e-47 |
| Msa1234680 | Msa1369190 | 0.803879 | 2.823660e-49 | -8.615850e-47 |
| Msa1234680 | Msa1370860 | 0.827517 | 1.497969e-54 | -8.615850e-47 |
| Msa1234680 | Msa1379760 | 0.806861 | 6.698271e-50 | -8.615850e-47 |
| Msa1234680 | Msa1386600 | 0.845820 | 3.198970e-59 | -8.615850e-47 |
| Msa1234680 | Msa1404190 | 0.806580 | 7.679353e-50 | -8.615850e-47 |
| Msa1234680 | Msa1433310 | 0.805782 | 1.130516e-49 | -8.615850e-47 |
| Msa1234680 | Msa1442850 | 0.859301 | 4.545537e-63 | -8.615850e-47 |
| Msa1234680 | Msa1448690 | 0.847112 | 1.421104e-59 | -8.615850e-47 |
| Msa1234680 | Msa1450280 | 0.818801 | 1.621859e-52 | -8.615850e-47 |
| Msa1234680 | Msa1461490 | 0.820081 | 8.280354e-53 | -8.615850e-47 |
| Msa1234680 | Msa1465080 | 0.809883 | 1.518077e-50 | -8.615850e-47 |
| Msa1234680 | Msa1466990 | 0.814075 | 1.852768e-51 | -8.615850e-47 |
| Msa0376690 | Msa1234680 | 0.808561 | 2.915850e-50 | -8.615850e-47 |
| Msa0402330 | Msa1234680 | 0.821216 | 4.542219e-53 | -8.615850e-47 |
| Msa0416400 | Msa1234680 | 0.813186 | 2.907266e-51 | -8.615850e-47 |
| Msa0434920 | Msa1234680 | 0.803126 | 4.044659e-49 | -8.615850e-47 |
| Msa0437690 | Msa1234680 | -0.800570 | 1.354835e-48 | -8.615850e-47 |
| Msa0443390 | Msa1234680 | 0.821402 | 4.115635e-53 | -8.615850e-47 |
| Msa0458060 | Msa1234680 | 0.803633 | 3.175549e-49 | -8.615850e-47 |
| Msa0471590 | Msa1234680 | 0.808840 | 2.540851e-50 | -8.615850e-47 |
| Msa0481480 | Msa1234680 | 0.800346 | 1.504649e-48 | -8.615850e-47 |
| Msa1019240 | Msa1234680 | 0.838161 | 3.390001e-57 | -8.615850e-47 |
| Msa1019260 | Msa1234680 | 0.835942 | 1.250698e-56 | -8.615850e-47 |
| Msa1081150 | Msa1234680 | 0.816627 | 5.015849e-52 | -8.615850e-47 |
| Msa1082700 | Msa1234680 | 0.809557 | 1.783824e-50 | -8.615850e-47 |
| Msa1104140 | Msa1234680 | 0.822892 | 1.856993e-53 | -8.615850e-47 |
| Msa1104210 | Msa1234680 | 0.842330 | 2.762737e-58 | -8.615850e-47 |
| Msa0244780 | Msa1234680 | 0.843464 | 1.378627e-58 | -8.615850e-47 |
| Msa0264570 | Msa1234680 | 0.812517 | 4.074886e-51 | -8.615850e-47 |
| Msa0268130 | Msa1234680 | 0.841248 | 5.330456e-58 | -8.615850e-47 |
| Msa0280430 | Msa1234680 | 0.802053 | 6.732387e-49 | -8.615850e-47 |
| Msa0298990 | Msa1234680 | 0.842517 | 2.463984e-58 | -8.615850e-47 |
| Msa0304590 | Msa1234680 | 0.817118 | 3.893132e-52 | -8.615850e-47 |
| Msa0322890 | Msa1234680 | 0.803443 | 3.478308e-49 | -8.615850e-47 |
| Msa0331700 | Msa1234680 | 0.804658 | 1.943836e-49 | -8.615850e-47 |
| Msa0355270 | Msa1234680 | 0.820474 | 6.729038e-53 | -8.615850e-47 |
| Msa1126510 | Msa1234680 | 0.836804 | 7.550981e-57 | -8.615850e-47 |
| Msa1126770 | Msa1234680 | 0.833182 | 6.177344e-56 | -8.615850e-47 |
| Msa1127890 | Msa1234680 | 0.813818 | 2.111444e-51 | -8.615850e-47 |
| Msa1165870 | Msa1234680 | 0.801511 | 8.700300e-49 | -8.615850e-47 |
| Msa1166340 | Msa1234680 | 0.802051 | 6.738428e-49 | -8.615850e-47 |
| Msa1166860 | Msa1234680 | 0.846756 | 1.778777e-59 | -8.615850e-47 |
| Msa1166870 | Msa1234680 | 0.825256 | 5.175933e-54 | -8.615850e-47 |
| Msa1179950 | Msa1234680 | 0.807878 | 4.076816e-50 | -8.615850e-47 |
| Msa1179980 | Msa1234680 | 0.806373 | 8.491086e-50 | -8.615850e-47 |
| Msa1184370 | Msa1234680 | 0.810764 | 9.798446e-51 | -8.615850e-47 |
| Msa0508590 | Msa1234680 | 0.828803 | 7.337329e-55 | -8.615850e-47 |
| Msa0508630 | Msa1234680 | 0.837035 | 6.589552e-57 | -8.615850e-47 |
| Msa0526540 | Msa1234680 | 0.851013 | 1.169688e-60 | -8.615850e-47 |
| Msa0541860 | Msa1234680 | 0.830528 | 2.791925e-55 | -8.615850e-47 |
| Msa0555910 | Msa1234680 | 0.807602 | 4.665770e-50 | -8.615850e-47 |
| Msa0571920 | Msa1234680 | 0.802011 | 6.868591e-49 | -8.615850e-47 |
| Msa0576940 | Msa1234680 | 0.858538 | 7.693332e-63 | -8.615850e-47 |
| Msa0581070 | Msa1234680 | 0.819364 | 1.207662e-52 | -8.615850e-47 |
| Msa0864010 | Msa1234680 | 0.821546 | 3.813196e-53 | -8.615850e-47 |
| Msa0966270 | Msa1234680 | 0.819402 | 1.183650e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234680 | MtrunA17_Chr8g0344731 | 91.057 | 246 | 6 | 2 | 1 | 246 | 1 | 230 | 7.12e-162 | 447 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234680 | AT1G17350.3 | 65.975 | 241 | 65 | 3 | 1 | 240 | 1 | 225 | 9.78e-116 | 330 |
| Msa1234680 | AT1G17350.5 | 65.975 | 241 | 65 | 3 | 1 | 240 | 1 | 225 | 9.78e-116 | 330 |
| Msa1234680 | AT1G17350.1 | 65.975 | 241 | 65 | 3 | 1 | 240 | 1 | 225 | 9.78e-116 | 330 |
| Msa1234680 | AT1G17350.4 | 65.975 | 241 | 65 | 3 | 1 | 240 | 1 | 225 | 9.78e-116 | 330 |
| Msa1234680 | AT1G17350.2 | 66.234 | 231 | 69 | 3 | 1 | 230 | 1 | 223 | 2.71e-108 | 312 |
| Msa1234680 | AT1G72420.1 | 61.983 | 242 | 74 | 4 | 1 | 240 | 1 | 226 | 4.22e-105 | 304 |
| Msa1234680 | AT1G72420.2 | 61.983 | 242 | 74 | 4 | 1 | 240 | 1 | 226 | 4.22e-105 | 304 |
| Msa1234680 | AT1G72420.4 | 61.333 | 225 | 69 | 4 | 18 | 240 | 7 | 215 | 4.98e-96 | 280 |
| Msa1234680 | AT1G72420.5 | 63.910 | 133 | 47 | 1 | 1 | 132 | 1 | 133 | 1.95e-56 | 179 |
| Msa1234680 | AT1G72420.3 | 63.910 | 133 | 47 | 1 | 1 | 132 | 1 | 133 | 3.31e-56 | 176 |
| Msa1234680 | AT1G72420.6 | 63.910 | 133 | 47 | 1 | 1 | 132 | 1 | 133 | 3.31e-56 | 176 |
Find 80 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTATTTGTGATTCTTAA+AGG | 0.095752 | 8_2:+12322975 | Msa1234680:three_prime_UTR |
| TTGTATTCTGATTCTGAATT+TGG | 0.164131 | 8_2:+12319237 | Msa1234680:CDS |
| TGCAATATACCAGTTATCTT+TGG | 0.216625 | 8_2:-12320625 | None:intergenic |
| ATTGCCAACAACTTGTAATA+AGG | 0.238491 | 8_2:+12323212 | Msa1234680:three_prime_UTR |
| ACGATAGCTATGAAACTTAA+AGG | 0.245721 | 8_2:+12320390 | Msa1234680:CDS |
| CAGATACCTGAATCTGAAAA+TGG | 0.295053 | 8_2:+12319381 | Msa1234680:CDS |
| GTGCACATGCGAGGTGGTTT+TGG | 0.312467 | 8_2:-12323308 | None:intergenic |
| CATCATTATTATTACAAAAC+AGG | 0.316698 | 8_2:-12322952 | None:intergenic |
| TGCAGATATACACGGAGAAT+TGG | 0.328795 | 8_2:+12320547 | Msa1234680:intron |
| TTGATTTCAACAGCTATATC+TGG | 0.331646 | 8_2:+12319135 | Msa1234680:intron |
| CAAAACCTATACTACATCAT+TGG | 0.343817 | 8_2:-12322880 | None:intergenic |
| GCAATATACCAGTTATCTTT+GGG | 0.348274 | 8_2:-12320624 | None:intergenic |
| TTGTGGAATGCGCTCCAAAA+AGG | 0.350095 | 8_2:+12319485 | Msa1234680:CDS |
| TTTACGTGCCCAAAGATAAC+TGG | 0.351126 | 8_2:+12320616 | Msa1234680:CDS |
| CCAAGCAAGAATTATCAAAA+TGG | 0.360136 | 8_2:+12319211 | Msa1234680:CDS |
| AAGAGAGAAGGAAGCATGTT+TGG | 0.363868 | 8_2:-12318955 | None:intergenic |
| ATTTCAGACTTGAACTTGAA+TGG | 0.375010 | 8_2:+12322833 | Msa1234680:CDS |
| CAGGTGATTTGTGGTGGTGT+GGG | 0.375042 | 8_2:+12322242 | Msa1234680:CDS |
| GGTGTCCCAGGTGCTAGATC+TGG | 0.377828 | 8_2:+12322802 | Msa1234680:CDS |
| AAACATGCTTCCTTCTCTCT+TGG | 0.384440 | 8_2:+12318957 | Msa1234680:five_prime_UTR |
| TAGCTTCGAGAAGTCGAAAA+TGG | 0.384475 | 8_2:-12323242 | None:intergenic |
| ATGAATCCATCACGTGTTCT+TGG | 0.389127 | 8_2:+12322751 | Msa1234680:CDS |
| CATTGGGTTCTCACTTCTCA+TGG | 0.392116 | 8_2:-12322863 | None:intergenic |
| TTGCCCTTATTACAAGTTGT+TGG | 0.420192 | 8_2:-12323216 | None:intergenic |
| TCAGGTGATTTGTGGTGGTG+TGG | 0.422977 | 8_2:+12322241 | Msa1234680:CDS |
| TTGCCAACAACTTGTAATAA+GGG | 0.429244 | 8_2:+12323213 | Msa1234680:three_prime_UTR |
| TCTGAAAATGGTAAAACTAC+TGG | 0.430983 | 8_2:+12319393 | Msa1234680:CDS |
| GAGGGTGAGTAAAGTTAAGT+TGG | 0.434291 | 8_2:-12323286 | None:intergenic |
| CTCTGGGAATCTTTCACTTG+AGG | 0.435126 | 8_2:+12319422 | Msa1234680:CDS |
| TTTAAGCTGGATCTGGCCTC+AGG | 0.438196 | 8_2:+12322223 | Msa1234680:CDS |
| TATTCTGATTCTGAATTTGG+AGG | 0.441704 | 8_2:+12319240 | Msa1234680:CDS |
| ATCTGGCCTCAGGTGATTTG+TGG | 0.445665 | 8_2:+12322233 | Msa1234680:CDS |
| GTATGGGTTTAAGCTGGATC+TGG | 0.447946 | 8_2:+12322216 | Msa1234680:intron |
| AAAACCTATACTACATCATT+GGG | 0.453436 | 8_2:-12322879 | None:intergenic |
| AATGCCGAGGGTGGTGTCCC+AGG | 0.459127 | 8_2:+12322790 | Msa1234680:CDS |
| GCAGATATACACGGAGAATT+GGG | 0.459883 | 8_2:+12320548 | Msa1234680:intron |
| GTTTGATGGCTTCATTGACT+TGG | 0.463757 | 8_2:+12320356 | Msa1234680:intron |
| CATGCTTCCTTCTCTCTTGG+CGG | 0.470183 | 8_2:+12318960 | Msa1234680:five_prime_UTR |
| TGGTGTGGGGTGGTGCGGTA+CGG | 0.486508 | 8_2:+12322256 | Msa1234680:CDS |
| CCTGGTCCAGATCTAGCACC+TGG | 0.491978 | 8_2:-12322808 | None:intergenic |
| TCAATGGATGCTACTAAGAA+AGG | 0.500994 | 8_2:+12319053 | Msa1234680:CDS |
| AGAACCCAATGATGTAGTAT+AGG | 0.502929 | 8_2:+12322875 | Msa1234680:exon |
| GCTATGAAACTTAAAGGAGA+TGG | 0.505648 | 8_2:+12320396 | Msa1234680:CDS |
| TAGTAGCATCCATTGATGCT+TGG | 0.514719 | 8_2:-12319046 | None:intergenic |
| TGATTTGTGGTGGTGTGGGG+TGG | 0.523835 | 8_2:+12322246 | Msa1234680:CDS |
| GAGTTGTCCTCCATCTGTCC+AGG | 0.525035 | 8_2:-12320579 | None:intergenic |
| GATCTAGTATGGGTTTAAGC+TGG | 0.525359 | 8_2:+12322210 | Msa1234680:intron |
| TAGCTCGATATGTACCTACT+TGG | 0.540332 | 8_2:+12322698 | Msa1234680:CDS |
| CTTTCACTTGAGGTTACTCA+AGG | 0.540859 | 8_2:+12319432 | Msa1234680:CDS |
| GGTTAACTCACCTGGACAGA+TGG | 0.543070 | 8_2:+12320569 | Msa1234680:CDS |
| AGGTGATTTGTGGTGGTGTG+GGG | 0.543099 | 8_2:+12322243 | Msa1234680:CDS |
| AAGACTGTTCCAAGCATCAA+TGG | 0.543179 | 8_2:+12319037 | Msa1234680:CDS |
| TGTGGTGGTGTGGGGTGGTG+CGG | 0.551250 | 8_2:+12322251 | Msa1234680:CDS |
| AAGTGGAATATTAGTAGAGG+TGG | 0.553563 | 8_2:+12319459 | Msa1234680:CDS |
| TCTCTCACCGCCAAGAGAGA+AGG | 0.557731 | 8_2:-12318967 | None:intergenic |
| GCTAAGTGGAATATTAGTAG+AGG | 0.567692 | 8_2:+12319456 | Msa1234680:CDS |
| TAATGATGTCATTAATCAAG+TGG | 0.568925 | 8_2:+12323157 | Msa1234680:three_prime_UTR |
| GACAGATGGAGGACAACTCA+TGG | 0.575304 | 8_2:+12320583 | Msa1234680:CDS |
| AGCACCTGGGACACCACCCT+CGG | 0.576679 | 8_2:-12322794 | None:intergenic |
| CCAGGTGCTAGATCTGGACC+AGG | 0.581357 | 8_2:+12322808 | Msa1234680:CDS |
| GAGAATTGGGTTAACTCACC+TGG | 0.591802 | 8_2:+12320561 | Msa1234680:CDS |
| AGGTTACTCAAGGTGCTAAG+TGG | 0.593770 | 8_2:+12319442 | Msa1234680:CDS |
| ATCATTATTATTACAAAACA+GGG | 0.599675 | 8_2:-12322951 | None:intergenic |
| CGATATGTACCTACTTGGAG+AGG | 0.604855 | 8_2:+12322703 | Msa1234680:CDS |
| GACATGCCAAGAACACGTGA+TGG | 0.606451 | 8_2:-12322757 | None:intergenic |
| GTAGGTACATATCGAGCTAG+AGG | 0.608047 | 8_2:-12322694 | None:intergenic |
| TGGCCTCAGGTGATTTGTGG+TGG | 0.608727 | 8_2:+12322236 | Msa1234680:CDS |
| ATGTCATTAATCAAGTGGTA+TGG | 0.616154 | 8_2:+12323162 | Msa1234680:three_prime_UTR |
| TCTAAAAGTACACATTCAGA+CGG | 0.626724 | 8_2:-12323354 | None:intergenic |
| AGTTCAAGTCTGAAATCACC+TGG | 0.640637 | 8_2:-12322826 | None:intergenic |
| ATAACGTTCCCTCTCCAAGT+AGG | 0.644498 | 8_2:-12322712 | None:intergenic |
| TAACTCACCTGGACAGATGG+AGG | 0.644910 | 8_2:+12320572 | Msa1234680:CDS |
| GTGGTATGGTGTAACAATGG+TGG | 0.645793 | 8_2:+12323176 | Msa1234680:three_prime_UTR |
| TAATAGCTTTCATATTCACA+TGG | 0.647136 | 8_2:+12323034 | Msa1234680:three_prime_UTR |
| ATGGTGTAACAATGGTGGAA+AGG | 0.668201 | 8_2:+12323181 | Msa1234680:three_prime_UTR |
| GATATGTACCTACTTGGAGA+GGG | 0.669899 | 8_2:+12322704 | Msa1234680:CDS |
| ACACCACCACAAATCACCTG+AGG | 0.680040 | 8_2:-12322239 | None:intergenic |
| CAAGTGGTATGGTGTAACAA+TGG | 0.686669 | 8_2:+12323173 | Msa1234680:three_prime_UTR |
| GATTATGGTGCAGATATACA+CGG | 0.690928 | 8_2:+12320539 | Msa1234680:intron |
| CTGGTCCAGATCTAGCACCT+GGG | 0.695025 | 8_2:-12322807 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTGATATAGAAAT+AGG | - | chr8_2:12319689-12319708 | None:intergenic | 10.0% |
| !! | AATATTATCAATTTAATGAA+TGG | + | chr8_2:12321515-12321534 | Msa1234680:intron | 10.0% |
| !!! | AAGTTGAATATATATTTTTC+AGG | - | chr8_2:12319186-12319205 | None:intergenic | 15.0% |
| !! | CAATGTTAATATATTATTGA+TGG | - | chr8_2:12319642-12319661 | None:intergenic | 15.0% |
| !! | TTAAATAATCAAATTCAAAC+AGG | + | chr8_2:12319864-12319883 | Msa1234680:intron | 15.0% |
| !!! | CAGAAAAAATATAGAATTTT+TGG | + | chr8_2:12320871-12320890 | Msa1234680:intron | 15.0% |
| !!! | TTAAAAAACACTATCATTTT+AGG | - | chr8_2:12321680-12321699 | None:intergenic | 15.0% |
| !!! | TTTGATTTTGAAGAAAAAAA+GGG | + | chr8_2:12322387-12322406 | Msa1234680:intron | 15.0% |
| !! | ATCATTATTATTACAAAACA+GGG | - | chr8_2:12322954-12322973 | None:intergenic | 15.0% |
| !! | TTTAGACAAAAATATCATTT+CGG | + | chr8_2:12323371-12323390 | Msa1234680:three_prime_UTR | 15.0% |
| !!! | TTGAATATATATTTTTCAGG+TGG | - | chr8_2:12319183-12319202 | None:intergenic | 20.0% |
| !!! | ACTTTGGTTAATTTAATTTC+TGG | + | chr8_2:12319293-12319312 | Msa1234680:intron | 20.0% |
| !!! | CTTTGGTTAATTTAATTTCT+GGG | + | chr8_2:12319294-12319313 | Msa1234680:intron | 20.0% |
| !! | ATTGAATTGAATTGTATGAT+TGG | + | chr8_2:12320266-12320285 | Msa1234680:intron | 20.0% |
| !!! | ATTTGGCATTTTAAAAGAAA+AGG | - | chr8_2:12320449-12320468 | None:intergenic | 20.0% |
| !!! | TTTTTATAATAAGTCACGTT+TGG | - | chr8_2:12320940-12320959 | None:intergenic | 20.0% |
| !!! | ATTTTGCATTCAGATAAAAA+AGG | - | chr8_2:12321050-12321069 | None:intergenic | 20.0% |
| !! | ACCAAATAATTTAAACTTTG+GGG | - | chr8_2:12321559-12321578 | None:intergenic | 20.0% |
| !! | CACCAAATAATTTAAACTTT+GGG | - | chr8_2:12321560-12321579 | None:intergenic | 20.0% |
| !! | TCACCAAATAATTTAAACTT+TGG | - | chr8_2:12321561-12321580 | None:intergenic | 20.0% |
| !!! | TTAAATTATTTGGTGAAATC+AGG | + | chr8_2:12321565-12321584 | Msa1234680:intron | 20.0% |
| !! | ATAACAAGTACAAAATCAAT+GGG | - | chr8_2:12322076-12322095 | None:intergenic | 20.0% |
| !! | TATAACAAGTACAAAATCAA+TGG | - | chr8_2:12322077-12322096 | None:intergenic | 20.0% |
| !!! | TATTTTTGTCTATTTTGTTC+TGG | + | chr8_2:12322169-12322188 | Msa1234680:intron | 20.0% |
| !!! | GTTTGATTTTGAAGAAAAAA+AGG | + | chr8_2:12322386-12322405 | Msa1234680:intron | 20.0% |
| !!! | TTGATTTTGAAGAAAAAAAG+GGG | + | chr8_2:12322388-12322407 | Msa1234680:intron | 20.0% |
| !!! | TAAAAGAATAATTGTTGCTT+TGG | + | chr8_2:12322506-12322525 | Msa1234680:intron | 20.0% |
| !! | CATCATTATTATTACAAAAC+AGG | - | chr8_2:12322955-12322974 | None:intergenic | 20.0% |
| !! | TTCTTAAAGGAAAAATATGT+TGG | + | chr8_2:12322988-12323007 | Msa1234680:three_prime_UTR | 20.0% |
| !!! | AATATATATTTTTCAGGTGG+TGG | - | chr8_2:12319180-12319199 | None:intergenic | 25.0% |
| ! | TTGTATTCTGATTCTGAATT+TGG | + | chr8_2:12319237-12319256 | Msa1234680:CDS | 25.0% |
| ! | TCAAATTGTTAATGTTGTTC+AGG | + | chr8_2:12319339-12319358 | Msa1234680:intron | 25.0% |
| ! | ATTACTAGTGTTGTCAAATA+TGG | + | chr8_2:12319590-12319609 | Msa1234680:intron | 25.0% |
| ! | GAAAACAACTTATAGCTTAT+AGG | - | chr8_2:12319731-12319750 | None:intergenic | 25.0% |
| !! | ATAGCATTGAATTGTATGAA+TGG | + | chr8_2:12319929-12319948 | Msa1234680:intron | 25.0% |
| !! | TGACTTATTAGCTTATCTAA+TGG | - | chr8_2:12320199-12320218 | None:intergenic | 25.0% |
| ! | AGCTAATAAGTCAATTCAAA+CGG | + | chr8_2:12320206-12320225 | Msa1234680:intron | 25.0% |
| ! | AATTCAATTCAATATGCACT+AGG | - | chr8_2:12320259-12320278 | None:intergenic | 25.0% |
| ! | AAATTTCCTAGGATATCATT+TGG | - | chr8_2:12320466-12320485 | None:intergenic | 25.0% |
| ! | TATTGTAACTAGTTGGATTA+TGG | + | chr8_2:12320524-12320543 | Msa1234680:intron | 25.0% |
| ! | TATCAAAATCTGCTATGTTA+TGG | - | chr8_2:12320756-12320775 | None:intergenic | 25.0% |
| !! | ATTTTCCTAATAGAGAAACT+AGG | - | chr8_2:12320806-12320825 | None:intergenic | 25.0% |
| ! | TTTCTCTATTAGGAAAATAG+CGG | + | chr8_2:12320808-12320827 | Msa1234680:intron | 25.0% |
| ! | ATTCAGATAAAAAAGGAAAC+GGG | - | chr8_2:12321043-12321062 | None:intergenic | 25.0% |
| ! | CATTCAGATAAAAAAGGAAA+CGG | - | chr8_2:12321044-12321063 | None:intergenic | 25.0% |
| ! | TCTATTTAACAATGAAGTTC+TGG | + | chr8_2:12321140-12321159 | Msa1234680:intron | 25.0% |
| !! | ATGATAACCTGTAATTTTGT+AGG | + | chr8_2:12321208-12321227 | Msa1234680:intron | 25.0% |
| ! | AATGAGATAGTATACATTTG+TGG | - | chr8_2:12321299-12321318 | None:intergenic | 25.0% |
| ! | TCCCCAAAGTTTAAATTATT+TGG | + | chr8_2:12321555-12321574 | Msa1234680:intron | 25.0% |
| !! | TATGATTCATTTGTTGCATT+TGG | - | chr8_2:12321708-12321727 | None:intergenic | 25.0% |
| ! | AATGCAACAAATGAATCATA+AGG | + | chr8_2:12321708-12321727 | Msa1234680:intron | 25.0% |
| ! | CTTTACAAACAAGTTCAAAT+TGG | - | chr8_2:12321800-12321819 | None:intergenic | 25.0% |
| !! | CAATTTGAACTTGTTTGTAA+AGG | + | chr8_2:12321798-12321817 | Msa1234680:intron | 25.0% |
| ! | TAAGCTAAATTTAGCTACAA+CGG | + | chr8_2:12321989-12322008 | Msa1234680:intron | 25.0% |
| ! | TTATCTATTGAGTAAACACT+TGG | + | chr8_2:12322358-12322377 | Msa1234680:intron | 25.0% |
| ! | TATCTATTGAGTAAACACTT+GGG | + | chr8_2:12322359-12322378 | Msa1234680:intron | 25.0% |
| ! | TTCTATGTATATGTAAGTGA+AGG | + | chr8_2:12322547-12322566 | Msa1234680:intron | 25.0% |
| ! | TCTATGTATATGTAAGTGAA+GGG | + | chr8_2:12322548-12322567 | Msa1234680:intron | 25.0% |
| ! | AAAACCTATACTACATCATT+GGG | - | chr8_2:12322882-12322901 | None:intergenic | 25.0% |
| ! | CATCTATTTGTGATTCTTAA+AGG | + | chr8_2:12322975-12322994 | Msa1234680:three_prime_UTR | 25.0% |
| ! | TAATAGCTTTCATATTCACA+TGG | + | chr8_2:12323034-12323053 | Msa1234680:three_prime_UTR | 25.0% |
| ! | TAATGATGTCATTAATCAAG+TGG | + | chr8_2:12323157-12323176 | Msa1234680:three_prime_UTR | 25.0% |
| !!! | TTCAAAAGTGTATTTTCGAA+CGG | - | chr8_2:12323399-12323418 | None:intergenic | 25.0% |
| TTGATTTCAACAGCTATATC+TGG | + | chr8_2:12319135-12319154 | Msa1234680:intron | 30.0% | |
| !! | CCATTTTGATAATTCTTGCT+TGG | - | chr8_2:12319214-12319233 | None:intergenic | 30.0% |
| CCAAGCAAGAATTATCAAAA+TGG | + | chr8_2:12319211-12319230 | Msa1234680:CDS | 30.0% | |
| TATTCTGATTCTGAATTTGG+AGG | + | chr8_2:12319240-12319259 | Msa1234680:CDS | 30.0% | |
| ! | GTTGCTAAAGTTTGAAACTT+TGG | + | chr8_2:12319277-12319296 | Msa1234680:intron | 30.0% |
| ! | GTTTTACCATTTTCAGATTC+AGG | - | chr8_2:12319390-12319409 | None:intergenic | 30.0% |
| TCTGAAAATGGTAAAACTAC+TGG | + | chr8_2:12319393-12319412 | Msa1234680:CDS | 30.0% | |
| ! | AAAACTACTGGAATTTTCTC+TGG | + | chr8_2:12319405-12319424 | Msa1234680:CDS | 30.0% |
| ! | AAACTACTGGAATTTTCTCT+GGG | + | chr8_2:12319406-12319425 | Msa1234680:CDS | 30.0% |
| ! | AGTTAAAAAAGCCACCTTTT+TGG | - | chr8_2:12319502-12319521 | None:intergenic | 30.0% |
| ! | TCAAAGACTTTAGTGTTGTT+TGG | + | chr8_2:12319521-12319540 | Msa1234680:intron | 30.0% |
| TTAGCTTATCTAATGGCATA+AGG | - | chr8_2:12320192-12320211 | None:intergenic | 30.0% | |
| CAATATTGTCGTTGAACAAA+TGG | - | chr8_2:12320233-12320252 | None:intergenic | 30.0% | |
| !! | TTCTCATTTTTGTTCAACGA+CGG | + | chr8_2:12320296-12320315 | Msa1234680:intron | 30.0% |
| !! | TCTGTGTTTTTGTAGTTTGA+TGG | + | chr8_2:12320342-12320361 | Msa1234680:intron | 30.0% |
| ACGATAGCTATGAAACTTAA+AGG | + | chr8_2:12320390-12320409 | Msa1234680:CDS | 30.0% | |
| TTAAAAGAAAAGGACACTCA+CGG | - | chr8_2:12320439-12320458 | None:intergenic | 30.0% | |
| AAAATGCCAAATGATATCCT+AGG | + | chr8_2:12320457-12320476 | Msa1234680:intron | 30.0% | |
| TGATATCCTAGGAAATTTAG+AGG | + | chr8_2:12320468-12320487 | Msa1234680:intron | 30.0% | |
| GATATCCTAGGAAATTTAGA+GGG | + | chr8_2:12320469-12320488 | Msa1234680:intron | 30.0% | |
| ! | TTGCAAGTATTGTAACTAGT+TGG | + | chr8_2:12320517-12320536 | Msa1234680:intron | 30.0% |
| GCAATATACCAGTTATCTTT+GGG | - | chr8_2:12320627-12320646 | None:intergenic | 30.0% | |
| TGCAATATACCAGTTATCTT+TGG | - | chr8_2:12320628-12320647 | None:intergenic | 30.0% | |
| AGATAACTGGTATATTGCAA+AGG | + | chr8_2:12320629-12320648 | Msa1234680:intron | 30.0% | |
| CATATCGATCATTACTAATC+AGG | - | chr8_2:12320685-12320704 | None:intergenic | 30.0% | |
| ACTATCCTAGTTTCTCTATT+AGG | + | chr8_2:12320798-12320817 | Msa1234680:intron | 30.0% | |
| TTCTCTATTAGGAAAATAGC+GGG | + | chr8_2:12320809-12320828 | Msa1234680:intron | 30.0% | |
| AGCGAAGCTTACATATTAAA+AGG | - | chr8_2:12321015-12321034 | None:intergenic | 30.0% | |
| TTCAGATAAAAAAGGAAACG+GGG | - | chr8_2:12321042-12321061 | None:intergenic | 30.0% | |
| AGTCAACTATACACAAGAAA+AGG | - | chr8_2:12321074-12321093 | None:intergenic | 30.0% | |
| TGACTTATTTCAATGACATG+CGG | + | chr8_2:12321089-12321108 | Msa1234680:intron | 30.0% | |
| TAAATAGAAGATAGCATTGC+AGG | - | chr8_2:12321128-12321147 | None:intergenic | 30.0% | |
| AATACGTCCTACAAAATTAC+AGG | - | chr8_2:12321218-12321237 | None:intergenic | 30.0% | |
| ! | CTACGTTTTGCAATTTAATC+AGG | - | chr8_2:12321329-12321348 | None:intergenic | 30.0% |
| TTGAGATTAAGGACTAGATA+AGG | + | chr8_2:12321370-12321389 | Msa1234680:intron | 30.0% | |
| ACTTCGATTATGCAAATTTC+TGG | + | chr8_2:12321492-12321511 | Msa1234680:intron | 30.0% | |
| AAACTAGAATCAAGAGTTTG+AGG | + | chr8_2:12321614-12321633 | Msa1234680:intron | 30.0% | |
| ! | CTATCATTTTAGGCATGTAA+AGG | - | chr8_2:12321670-12321689 | None:intergenic | 30.0% |
| ! | TTTGAACTTGTTTGTAAAGG+AGG | + | chr8_2:12321801-12321820 | Msa1234680:intron | 30.0% |
| TTGTTTGTAAAGGAGGTTAA+CGG | + | chr8_2:12321808-12321827 | Msa1234680:intron | 30.0% | |
| AAGTTTGCAATGAAACCAAA+AGG | + | chr8_2:12321917-12321936 | Msa1234680:intron | 30.0% | |
| ! | AAATTTAGCTTAGTAGAGCT+AGG | - | chr8_2:12321981-12322000 | None:intergenic | 30.0% |
| AAGCTAAATTTAGCTACAAC+GGG | + | chr8_2:12321990-12322009 | Msa1234680:intron | 30.0% | |
| TCAATATTACTAAAGAGCGA+CGG | - | chr8_2:12322035-12322054 | None:intergenic | 30.0% | |
| ATCTATTGAGTAAACACTTG+GGG | + | chr8_2:12322360-12322379 | Msa1234680:intron | 30.0% | |
| !! | AAGAAAAAAAGGGGTTTTGA+TGG | + | chr8_2:12322397-12322416 | Msa1234680:intron | 30.0% |
| TGGTCAGGAAATACTATAAA+CGG | + | chr8_2:12322417-12322436 | Msa1234680:intron | 30.0% | |
| AGGAAATACTATAAACGGAT+AGG | + | chr8_2:12322422-12322441 | Msa1234680:intron | 30.0% | |
| ATATACATAGAAAGCCAACA+AGG | - | chr8_2:12322539-12322558 | None:intergenic | 30.0% | |
| ATTTCAGACTTGAACTTGAA+TGG | + | chr8_2:12322833-12322852 | Msa1234680:CDS | 30.0% | |
| CAAAACCTATACTACATCAT+TGG | - | chr8_2:12322883-12322902 | None:intergenic | 30.0% | |
| ! | AGTCAAGATTTTGCTCTTTT+AGG | + | chr8_2:12322914-12322933 | Msa1234680:three_prime_UTR | 30.0% |
| ! | GTCAAGATTTTGCTCTTTTA+GGG | + | chr8_2:12322915-12322934 | Msa1234680:three_prime_UTR | 30.0% |
| ATGTCATTAATCAAGTGGTA+TGG | + | chr8_2:12323162-12323181 | Msa1234680:three_prime_UTR | 30.0% | |
| ATTGCCAACAACTTGTAATA+AGG | + | chr8_2:12323212-12323231 | Msa1234680:three_prime_UTR | 30.0% | |
| TTGCCAACAACTTGTAATAA+GGG | + | chr8_2:12323213-12323232 | Msa1234680:three_prime_UTR | 30.0% | |
| ! | TCTAAAAGTACACATTCAGA+CGG | - | chr8_2:12323357-12323376 | None:intergenic | 30.0% |
| TCAATGGATGCTACTAAGAA+AGG | + | chr8_2:12319053-12319072 | Msa1234680:CDS | 35.0% | |
| CAGATACCTGAATCTGAAAA+TGG | + | chr8_2:12319381-12319400 | Msa1234680:CDS | 35.0% | |
| GCTAAGTGGAATATTAGTAG+AGG | + | chr8_2:12319456-12319475 | Msa1234680:CDS | 35.0% | |
| AAGTGGAATATTAGTAGAGG+TGG | + | chr8_2:12319459-12319478 | Msa1234680:CDS | 35.0% | |
| !! | ATTAGTAGAGGTGGATTTTG+TGG | + | chr8_2:12319468-12319487 | Msa1234680:CDS | 35.0% |
| AAGCTATCTTGTAGAGCTTA+TGG | + | chr8_2:12319753-12319772 | Msa1234680:intron | 35.0% | |
| ! | CTCACAAGTTTTTATGCTAG+TGG | + | chr8_2:12319835-12319854 | Msa1234680:intron | 35.0% |
| TGTTGTCGAACTTGAACAAA+GGG | - | chr8_2:12319890-12319909 | None:intergenic | 35.0% | |
| TTGTTGTCGAACTTGAACAA+AGG | - | chr8_2:12319891-12319910 | None:intergenic | 35.0% | |
| AAGTTCGACAACAACATAGA+TGG | + | chr8_2:12319897-12319916 | Msa1234680:intron | 35.0% | |
| ! | CTCAATGATTTTGCAGTGTT+TGG | + | chr8_2:12319967-12319986 | Msa1234680:intron | 35.0% |
| TTGAGTGATTATAGTGTGAG+CGG | + | chr8_2:12320001-12320020 | Msa1234680:intron | 35.0% | |
| CAAAAACACAGAATTGCGTA+AGG | - | chr8_2:12320334-12320353 | None:intergenic | 35.0% | |
| GCTATGAAACTTAAAGGAGA+TGG | + | chr8_2:12320396-12320415 | Msa1234680:CDS | 35.0% | |
| TCAAACCCTCTAAATTTCCT+AGG | - | chr8_2:12320477-12320496 | None:intergenic | 35.0% | |
| ! | GGGTTTGAAGTTTCATTTCA+TGG | + | chr8_2:12320489-12320508 | Msa1234680:intron | 35.0% |
| GATTATGGTGCAGATATACA+CGG | + | chr8_2:12320539-12320558 | Msa1234680:intron | 35.0% | |
| GTAAGCAGTAAGATGGAAAT+GGG | - | chr8_2:12320660-12320679 | None:intergenic | 35.0% | |
| TGTAAGCAGTAAGATGGAAA+TGG | - | chr8_2:12320661-12320680 | None:intergenic | 35.0% | |
| AATGATCGATATGTTCGACT+AGG | + | chr8_2:12320692-12320711 | Msa1234680:intron | 35.0% | |
| !! | TAGTGTTGAGGTTTTTGTTG+CGG | - | chr8_2:12320782-12320801 | None:intergenic | 35.0% |
| TCAGATAAAAAAGGAAACGG+GGG | - | chr8_2:12321041-12321060 | None:intergenic | 35.0% | |
| ACTATTGTAAAACCTTGCAG+TGG | - | chr8_2:12321437-12321456 | None:intergenic | 35.0% | |
| ! | ATTTAAACTTTGGGGAGAGT+TGG | - | chr8_2:12321551-12321570 | None:intergenic | 35.0% |
| TAAAGGACCAACTAAATTGC+AGG | - | chr8_2:12321653-12321672 | None:intergenic | 35.0% | |
| ! | TCTGTGACATTGTTTGAGTT+GGG | - | chr8_2:12321868-12321887 | None:intergenic | 35.0% |
| ! | ATGGGTTTCTTCATGTTTTC+TGG | - | chr8_2:12321891-12321910 | None:intergenic | 35.0% |
| TGTTCTGGTCTATTCTATTG+TGG | + | chr8_2:12322184-12322203 | Msa1234680:intron | 35.0% | |
| TATTGTGGTCTGATCTAGTA+TGG | + | chr8_2:12322199-12322218 | Msa1234680:intron | 35.0% | |
| ATTGTGGTCTGATCTAGTAT+GGG | + | chr8_2:12322200-12322219 | Msa1234680:intron | 35.0% | |
| TGTATATGTAAGTGAAGGGA+TGG | + | chr8_2:12322552-12322571 | Msa1234680:intron | 35.0% | |
| GTATATGTAAGTGAAGGGAT+GGG | + | chr8_2:12322553-12322572 | Msa1234680:intron | 35.0% | |
| CATCACTTCAGTGCTTAATA+TGG | - | chr8_2:12322589-12322608 | None:intergenic | 35.0% | |
| AGAACCCAATGATGTAGTAT+AGG | + | chr8_2:12322875-12322894 | Msa1234680:exon | 35.0% | |
| TTGCCCTTATTACAAGTTGT+TGG | - | chr8_2:12323219-12323238 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTGTGCACATGCG+AGG | - | chr8_2:12323320-12323339 | None:intergenic | 35.0% |
| ! | AAGAGAGAAGGAAGCATGTT+TGG | - | chr8_2:12318958-12318977 | None:intergenic | 40.0% |
| AAACATGCTTCCTTCTCTCT+TGG | + | chr8_2:12318957-12318976 | Msa1234680:five_prime_UTR | 40.0% | |
| AAGACTGTTCCAAGCATCAA+TGG | + | chr8_2:12319037-12319056 | Msa1234680:CDS | 40.0% | |
| TAGTAGCATCCATTGATGCT+TGG | - | chr8_2:12319049-12319068 | None:intergenic | 40.0% | |
| CTTTCACTTGAGGTTACTCA+AGG | + | chr8_2:12319432-12319451 | Msa1234680:CDS | 40.0% | |
| AGAAAGCCAAAAATCCGTCA+GGG | - | chr8_2:12319618-12319637 | None:intergenic | 40.0% | |
| TAAGGAGATGTGAGACTCTA+TGG | - | chr8_2:12320174-12320193 | None:intergenic | 40.0% | |
| ! | GTTTGATGGCTTCATTGACT+TGG | + | chr8_2:12320356-12320375 | Msa1234680:intron | 40.0% |
| TGCAGATATACACGGAGAAT+TGG | + | chr8_2:12320547-12320566 | Msa1234680:intron | 40.0% | |
| GCAGATATACACGGAGAATT+GGG | + | chr8_2:12320548-12320567 | Msa1234680:intron | 40.0% | |
| TTTACGTGCCCAAAGATAAC+TGG | + | chr8_2:12320616-12320635 | Msa1234680:CDS | 40.0% | |
| ! | TCAGGTTGTAAGCAGTAAGA+TGG | - | chr8_2:12320667-12320686 | None:intergenic | 40.0% |
| GAGAAACTAGGATAGTGTTG+AGG | - | chr8_2:12320794-12320813 | None:intergenic | 40.0% | |
| GCAAAACGTAGTTACCTTGA+CGG | + | chr8_2:12321338-12321357 | Msa1234680:intron | 40.0% | |
| CAAAACGTAGTTACCTTGAC+GGG | + | chr8_2:12321339-12321358 | Msa1234680:intron | 40.0% | |
| !! | GGGCTTGAACTTTGAGATTA+AGG | + | chr8_2:12321359-12321378 | Msa1234680:intron | 40.0% |
| ! | GTAATTTTCCATCCACTGCA+AGG | + | chr8_2:12321422-12321441 | Msa1234680:intron | 40.0% |
| TTGTAAAACCTTGCAGTGGA+TGG | - | chr8_2:12321433-12321452 | None:intergenic | 40.0% | |
| GAAATCAGGTTAACTCGCTT+AGG | + | chr8_2:12321579-12321598 | Msa1234680:intron | 40.0% | |
| GAACAAGCCTGCAATTTAGT+TGG | + | chr8_2:12321643-12321662 | Msa1234680:intron | 40.0% | |
| GTCTGTGACATTGTTTGAGT+TGG | - | chr8_2:12321869-12321888 | None:intergenic | 40.0% | |
| CATTGCAAACTTGCAACGAT+GGG | - | chr8_2:12321909-12321928 | None:intergenic | 40.0% | |
| TCATTGCAAACTTGCAACGA+TGG | - | chr8_2:12321910-12321929 | None:intergenic | 40.0% | |
| AGAGCTAGGTTTCAACTCAT+CGG | - | chr8_2:12321967-12321986 | None:intergenic | 40.0% | |
| CTAAATTTAGCTACAACGGG+AGG | + | chr8_2:12321993-12322012 | Msa1234680:intron | 40.0% | |
| GATCTAGTATGGGTTTAAGC+TGG | + | chr8_2:12322210-12322229 | Msa1234680:intron | 40.0% | |
| !! | AAAAAGGGGTTTTGATGGTC+AGG | + | chr8_2:12322402-12322421 | Msa1234680:intron | 40.0% |
| TAGCTCGATATGTACCTACT+TGG | + | chr8_2:12322698-12322717 | Msa1234680:CDS | 40.0% | |
| GATATGTACCTACTTGGAGA+GGG | + | chr8_2:12322704-12322723 | Msa1234680:CDS | 40.0% | |
| ATGAATCCATCACGTGTTCT+TGG | + | chr8_2:12322751-12322770 | Msa1234680:CDS | 40.0% | |
| ! | TCTTTTTCTGTCAATGCCGA+GGG | + | chr8_2:12322778-12322797 | Msa1234680:CDS | 40.0% |
| ! | AGTTCAAGTCTGAAATCACC+TGG | - | chr8_2:12322829-12322848 | None:intergenic | 40.0% |
| CAAGTGGTATGGTGTAACAA+TGG | + | chr8_2:12323173-12323192 | Msa1234680:three_prime_UTR | 40.0% | |
| ! | ATGGTGTAACAATGGTGGAA+AGG | + | chr8_2:12323181-12323200 | Msa1234680:three_prime_UTR | 40.0% |
| TAGCTTCGAGAAGTCGAAAA+TGG | - | chr8_2:12323245-12323264 | None:intergenic | 40.0% | |
| ! | ATTTTCGACTTCTCGAAGCT+AGG | + | chr8_2:12323244-12323263 | Msa1234680:three_prime_UTR | 40.0% |
| GAGGGTGAGTAAAGTTAAGT+TGG | - | chr8_2:12323289-12323308 | None:intergenic | 40.0% | |
| ! | CTCTGGGAATCTTTCACTTG+AGG | + | chr8_2:12319422-12319441 | Msa1234680:CDS | 45.0% |
| ! | AGGTTACTCAAGGTGCTAAG+TGG | + | chr8_2:12319442-12319461 | Msa1234680:CDS | 45.0% |
| TTGTGGAATGCGCTCCAAAA+AGG | + | chr8_2:12319485-12319504 | Msa1234680:CDS | 45.0% | |
| CAGAAAGCCAAAAATCCGTC+AGG | - | chr8_2:12319619-12319638 | None:intergenic | 45.0% | |
| GAGAATTGGGTTAACTCACC+TGG | + | chr8_2:12320561-12320580 | Msa1234680:CDS | 45.0% | |
| !!! | CATTCATCTGGTTGGCCTTT+TGG | - | chr8_2:12321935-12321954 | None:intergenic | 45.0% |
| GTTGGGTTCATTCATCTGGT+TGG | - | chr8_2:12321943-12321962 | None:intergenic | 45.0% | |
| GGTTTCAACTCATCGGAGTT+GGG | - | chr8_2:12321960-12321979 | None:intergenic | 45.0% | |
| AGGTTTCAACTCATCGGAGT+TGG | - | chr8_2:12321961-12321980 | None:intergenic | 45.0% | |
| GTATGGGTTTAAGCTGGATC+TGG | + | chr8_2:12322216-12322235 | Msa1234680:intron | 45.0% | |
| !!! | GCTTTGGTTTTGTGCCTTGT+TGG | + | chr8_2:12322522-12322541 | Msa1234680:intron | 45.0% |
| AGTGAAGGGATGGGTATCAT+TGG | + | chr8_2:12322562-12322581 | Msa1234680:intron | 45.0% | |
| CATATCGAGCTAGAGGAATC+TGG | - | chr8_2:12322690-12322709 | None:intergenic | 45.0% | |
| GTAGGTACATATCGAGCTAG+AGG | - | chr8_2:12322697-12322716 | None:intergenic | 45.0% | |
| CGATATGTACCTACTTGGAG+AGG | + | chr8_2:12322703-12322722 | Msa1234680:CDS | 45.0% | |
| ATAACGTTCCCTCTCCAAGT+AGG | - | chr8_2:12322715-12322734 | None:intergenic | 45.0% | |
| ! | GTCTTTTTCTGTCAATGCCG+AGG | + | chr8_2:12322777-12322796 | Msa1234680:CDS | 45.0% |
| CATTGGGTTCTCACTTCTCA+TGG | - | chr8_2:12322866-12322885 | None:intergenic | 45.0% | |
| GTGGTATGGTGTAACAATGG+TGG | + | chr8_2:12323176-12323195 | Msa1234680:three_prime_UTR | 45.0% | |
| !!! | TTTTTTGTGCACATGCGAGG+TGG | - | chr8_2:12323317-12323336 | None:intergenic | 45.0% |
| CATGCTTCCTTCTCTCTTGG+CGG | + | chr8_2:12318960-12318979 | Msa1234680:five_prime_UTR | 50.0% | |
| TGGAATGCGCTCCAAAAAGG+TGG | + | chr8_2:12319488-12319507 | Msa1234680:intron | 50.0% | |
| TGTCAAATATGGCGCCCTGA+CGG | + | chr8_2:12319601-12319620 | Msa1234680:intron | 50.0% | |
| GGAGATGTGAGACTCTATGG+AGG | - | chr8_2:12320171-12320190 | None:intergenic | 50.0% | |
| GGTTAACTCACCTGGACAGA+TGG | + | chr8_2:12320569-12320588 | Msa1234680:CDS | 50.0% | |
| TAACTCACCTGGACAGATGG+AGG | + | chr8_2:12320572-12320591 | Msa1234680:CDS | 50.0% | |
| GACAGATGGAGGACAACTCA+TGG | + | chr8_2:12320583-12320602 | Msa1234680:CDS | 50.0% | |
| CTGCGTCAGCTAGTATAGAC+TGG | - | chr8_2:12320842-12320861 | None:intergenic | 50.0% | |
| ACTAGCTGACGCAGTTGCAA+TGG | + | chr8_2:12320848-12320867 | Msa1234680:intron | 50.0% | |
| CTCAAAGTTCAAGCCCGTCA+AGG | - | chr8_2:12321355-12321374 | None:intergenic | 50.0% | |
| CGGAGTTGGGTTCATTCATC+TGG | - | chr8_2:12321947-12321966 | None:intergenic | 50.0% | |
| ACTAAAGAGCGACGGATGAC+TGG | - | chr8_2:12322027-12322046 | None:intergenic | 50.0% | |
| TTTAAGCTGGATCTGGCCTC+AGG | + | chr8_2:12322223-12322242 | Msa1234680:CDS | 50.0% | |
| ATCTGGCCTCAGGTGATTTG+TGG | + | chr8_2:12322233-12322252 | Msa1234680:CDS | 50.0% | |
| ACACCACCACAAATCACCTG+AGG | - | chr8_2:12322242-12322261 | None:intergenic | 50.0% | |
| ! | TCAGGTGATTTGTGGTGGTG+TGG | + | chr8_2:12322241-12322260 | Msa1234680:CDS | 50.0% |
| ! | CAGGTGATTTGTGGTGGTGT+GGG | + | chr8_2:12322242-12322261 | Msa1234680:CDS | 50.0% |
| ! | AGGTGATTTGTGGTGGTGTG+GGG | + | chr8_2:12322243-12322262 | Msa1234680:CDS | 50.0% |
| GACATGCCAAGAACACGTGA+TGG | - | chr8_2:12322760-12322779 | None:intergenic | 50.0% | |
| ! | TTTTCTGTCAATGCCGAGGG+TGG | + | chr8_2:12322781-12322800 | Msa1234680:CDS | 50.0% |
| !!! | ACATGCGAGGTGGTTTTGGA+GGG | - | chr8_2:12323307-12323326 | None:intergenic | 50.0% |
| TCTCTCACCGCCAAGAGAGA+AGG | - | chr8_2:12318970-12318989 | None:intergenic | 55.0% | |
| !!! | ATGGCGCCCTGACGGATTTT+TGG | + | chr8_2:12319609-12319628 | Msa1234680:intron | 55.0% |
| GAGTTGTCCTCCATCTGTCC+AGG | - | chr8_2:12320582-12320601 | None:intergenic | 55.0% | |
| ! | TGGCCTCAGGTGATTTGTGG+TGG | + | chr8_2:12322236-12322255 | Msa1234680:CDS | 55.0% |
| ! | TGATTTGTGGTGGTGTGGGG+TGG | + | chr8_2:12322246-12322265 | Msa1234680:CDS | 55.0% |
| CTGGTCCAGATCTAGCACCT+GGG | - | chr8_2:12322810-12322829 | None:intergenic | 55.0% | |
| !!! | CACATGCGAGGTGGTTTTGG+AGG | - | chr8_2:12323308-12323327 | None:intergenic | 55.0% |
| ! | GTGCACATGCGAGGTGGTTT+TGG | - | chr8_2:12323311-12323330 | None:intergenic | 55.0% |
| GAGCGACGGATGACTGGACT+GGG | - | chr8_2:12322021-12322040 | None:intergenic | 60.0% | |
| AGAGCGACGGATGACTGGAC+TGG | - | chr8_2:12322022-12322041 | None:intergenic | 60.0% | |
| GGTGTCCCAGGTGCTAGATC+TGG | + | chr8_2:12322802-12322821 | Msa1234680:CDS | 60.0% | |
| CCTGGTCCAGATCTAGCACC+TGG | - | chr8_2:12322811-12322830 | None:intergenic | 60.0% | |
| CCAGGTGCTAGATCTGGACC+AGG | + | chr8_2:12322808-12322827 | Msa1234680:CDS | 60.0% | |
| ! | TGTGGTGGTGTGGGGTGGTG+CGG | + | chr8_2:12322251-12322270 | Msa1234680:CDS | 65.0% |
| TGGTGTGGGGTGGTGCGGTA+CGG | + | chr8_2:12322256-12322275 | Msa1234680:CDS | 65.0% | |
| AATGCCGAGGGTGGTGTCCC+AGG | + | chr8_2:12322790-12322809 | Msa1234680:CDS | 65.0% | |
| AGCACCTGGGACACCACCCT+CGG | - | chr8_2:12322797-12322816 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 12318955 | 12323458 | 12318955 | ID=Msa1234680;Name=Msa1234680 |
| chr8_2 | mRNA | 12318955 | 12323458 | 12318955 | ID=Msa1234680-mRNA-1;Parent=Msa1234680;Name=Msa1234680-mRNA-1;_AED=0.13;_eAED=0.13;_QI=68|0.66|0.71|0.85|1|1|7|567|246 |
| chr8_2 | exon | 12318955 | 12319074 | 12318955 | ID=Msa1234680-mRNA-1:exon:4747;Parent=Msa1234680-mRNA-1 |
| chr8_2 | exon | 12319148 | 12319261 | 12319148 | ID=Msa1234680-mRNA-1:exon:4748;Parent=Msa1234680-mRNA-1 |
| chr8_2 | exon | 12319361 | 12319506 | 12319361 | ID=Msa1234680-mRNA-1:exon:4749;Parent=Msa1234680-mRNA-1 |
| chr8_2 | exon | 12320357 | 12320437 | 12320357 | ID=Msa1234680-mRNA-1:exon:4750;Parent=Msa1234680-mRNA-1 |
| chr8_2 | exon | 12320552 | 12320637 | 12320552 | ID=Msa1234680-mRNA-1:exon:4751;Parent=Msa1234680-mRNA-1 |
| chr8_2 | exon | 12322217 | 12322277 | 12322217 | ID=Msa1234680-mRNA-1:exon:4752;Parent=Msa1234680-mRNA-1 |
| chr8_2 | exon | 12322691 | 12323458 | 12322691 | ID=Msa1234680-mRNA-1:exon:4753;Parent=Msa1234680-mRNA-1 |
| chr8_2 | five_prime_UTR | 12318955 | 12319022 | 12318955 | ID=Msa1234680-mRNA-1:five_prime_utr;Parent=Msa1234680-mRNA-1 |
| chr8_2 | CDS | 12319023 | 12319074 | 12319023 | ID=Msa1234680-mRNA-1:cds;Parent=Msa1234680-mRNA-1 |
| chr8_2 | CDS | 12319148 | 12319261 | 12319148 | ID=Msa1234680-mRNA-1:cds;Parent=Msa1234680-mRNA-1 |
| chr8_2 | CDS | 12319361 | 12319506 | 12319361 | ID=Msa1234680-mRNA-1:cds;Parent=Msa1234680-mRNA-1 |
| chr8_2 | CDS | 12320357 | 12320437 | 12320357 | ID=Msa1234680-mRNA-1:cds;Parent=Msa1234680-mRNA-1 |
| chr8_2 | CDS | 12320552 | 12320637 | 12320552 | ID=Msa1234680-mRNA-1:cds;Parent=Msa1234680-mRNA-1 |
| chr8_2 | CDS | 12322217 | 12322277 | 12322217 | ID=Msa1234680-mRNA-1:cds;Parent=Msa1234680-mRNA-1 |
| chr8_2 | CDS | 12322691 | 12322891 | 12322691 | ID=Msa1234680-mRNA-1:cds;Parent=Msa1234680-mRNA-1 |
| chr8_2 | three_prime_UTR | 12322892 | 12323458 | 12322892 | ID=Msa1234680-mRNA-1:three_prime_utr;Parent=Msa1234680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
