Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000006.t1 | XP_013469665.1 | 85.3 | 278 | 34 | 4 | 1 | 277 | 1 | 272 | 6.30E-126 | 460.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000006.t1 | Q9ZVQ6 | 42.0 | 276 | 136 | 6 | 4 | 276 | 14 | 268 | 1.0e-55 | 218.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000006.t1 | G8A220 | 85.3 | 278 | 34 | 4 | 1 | 277 | 1 | 272 | 4.6e-126 | 460.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000006.t1 | MTR_1g100597 | 85.252 | 278 | 34 | 4 | 1 | 277 | 1 | 272 | 3.43e-166 | 461 |
| MS.gene000006.t1 | MTR_1g079180 | 70.000 | 280 | 66 | 4 | 1 | 277 | 1 | 265 | 9.46e-131 | 371 |
| MS.gene000006.t1 | MTR_1g079370 | 68.592 | 277 | 75 | 2 | 1 | 277 | 1 | 265 | 3.22e-130 | 370 |
| MS.gene000006.t1 | MTR_1g079260 | 67.266 | 278 | 84 | 3 | 1 | 277 | 1 | 272 | 7.00e-127 | 362 |
| MS.gene000006.t1 | MTR_1g079460 | 67.500 | 280 | 74 | 3 | 1 | 277 | 1 | 266 | 6.88e-126 | 359 |
| MS.gene000006.t1 | MTR_1g100613 | 76.349 | 241 | 54 | 2 | 20 | 258 | 5 | 244 | 2.35e-125 | 357 |
| MS.gene000006.t1 | MTR_1g079230 | 66.426 | 277 | 89 | 3 | 1 | 277 | 1 | 273 | 1.29e-124 | 356 |
| MS.gene000006.t1 | MTR_1g079200 | 67.021 | 282 | 70 | 5 | 1 | 277 | 1 | 264 | 9.84e-123 | 351 |
| MS.gene000006.t1 | MTR_1g079850 | 65.734 | 286 | 84 | 6 | 1 | 277 | 1 | 281 | 9.86e-119 | 342 |
| MS.gene000006.t1 | MTR_1g079380 | 67.509 | 277 | 78 | 3 | 1 | 277 | 1 | 265 | 2.55e-117 | 338 |
| MS.gene000006.t1 | MTR_3g006850 | 63.696 | 303 | 79 | 6 | 3 | 277 | 16 | 315 | 4.93e-117 | 338 |
| MS.gene000006.t1 | MTR_3g452600 | 59.489 | 274 | 95 | 3 | 4 | 277 | 10 | 267 | 5.72e-102 | 298 |
| MS.gene000006.t1 | MTR_1g026510 | 57.986 | 288 | 105 | 6 | 1 | 277 | 1 | 283 | 2.11e-101 | 298 |
| MS.gene000006.t1 | MTR_1g079250 | 62.191 | 283 | 96 | 5 | 1 | 277 | 1 | 278 | 4.79e-101 | 297 |
| MS.gene000006.t1 | MTR_1g079410 | 54.480 | 279 | 107 | 6 | 5 | 277 | 9 | 273 | 6.31e-92 | 273 |
| MS.gene000006.t1 | MTR_2g079100 | 55.839 | 274 | 99 | 4 | 3 | 274 | 8 | 261 | 6.65e-91 | 270 |
| MS.gene000006.t1 | MTR_3g450990 | 53.767 | 292 | 99 | 5 | 4 | 277 | 10 | 283 | 3.64e-90 | 269 |
| MS.gene000006.t1 | MTR_1g079350 | 54.483 | 290 | 104 | 9 | 1 | 277 | 1 | 275 | 1.84e-87 | 262 |
| MS.gene000006.t1 | MTR_1g079140 | 47.492 | 299 | 127 | 7 | 4 | 277 | 13 | 306 | 3.76e-80 | 244 |
| MS.gene000006.t1 | MTR_1g079340 | 50.831 | 301 | 109 | 9 | 1 | 277 | 40 | 325 | 1.09e-78 | 241 |
| MS.gene000006.t1 | MTR_7g096300 | 55.311 | 273 | 96 | 6 | 1 | 267 | 1 | 253 | 1.12e-77 | 250 |
| MS.gene000006.t1 | MTR_1g079400 | 46.479 | 284 | 124 | 5 | 5 | 277 | 13 | 279 | 2.85e-75 | 231 |
| MS.gene000006.t1 | MTR_7g112550 | 46.667 | 285 | 137 | 8 | 2 | 277 | 5 | 283 | 2.75e-70 | 218 |
| MS.gene000006.t1 | MTR_1g078470 | 59.459 | 185 | 58 | 3 | 93 | 277 | 17 | 184 | 8.81e-66 | 203 |
| MS.gene000006.t1 | MTR_1g083580 | 41.844 | 282 | 152 | 7 | 2 | 277 | 6 | 281 | 9.25e-66 | 207 |
| MS.gene000006.t1 | MTR_1g079240 | 55.497 | 191 | 62 | 4 | 87 | 277 | 12 | 179 | 1.10e-57 | 182 |
| MS.gene000006.t1 | MTR_7g112560 | 38.267 | 277 | 148 | 8 | 4 | 277 | 1 | 257 | 5.11e-55 | 179 |
| MS.gene000006.t1 | MTR_1g076870 | 64.493 | 138 | 35 | 3 | 128 | 255 | 2 | 135 | 1.04e-51 | 166 |
| MS.gene000006.t1 | MTR_4g023570 | 37.545 | 277 | 130 | 8 | 4 | 277 | 1 | 237 | 7.69e-50 | 164 |
| MS.gene000006.t1 | MTR_1g079350 | 60.902 | 133 | 47 | 2 | 1 | 128 | 1 | 133 | 8.51e-43 | 145 |
| MS.gene000006.t1 | MTR_1g079130 | 45.078 | 193 | 86 | 6 | 101 | 277 | 1 | 189 | 2.64e-41 | 141 |
| MS.gene000006.t1 | MTR_1g079210 | 61.789 | 123 | 45 | 1 | 129 | 249 | 7 | 129 | 2.68e-40 | 137 |
| MS.gene000006.t1 | MTR_7g096310 | 56.557 | 122 | 49 | 2 | 67 | 186 | 44 | 163 | 8.54e-34 | 121 |
| MS.gene000006.t1 | MTR_2g042540 | 61.905 | 105 | 38 | 2 | 1 | 103 | 1 | 105 | 1.98e-32 | 116 |
| MS.gene000006.t1 | MTR_3g058640 | 54.464 | 112 | 39 | 2 | 128 | 239 | 7 | 106 | 1.15e-30 | 110 |
| MS.gene000006.t1 | MTR_1g078460 | 63.218 | 87 | 32 | 0 | 1 | 87 | 64 | 150 | 2.84e-30 | 111 |
| MS.gene000006.t1 | MTR_7g103380 | 27.972 | 286 | 168 | 8 | 6 | 276 | 21 | 283 | 1.66e-28 | 110 |
| MS.gene000006.t1 | MTR_0113s0040 | 30.846 | 201 | 124 | 3 | 2 | 188 | 20 | 219 | 9.38e-25 | 100 |
| MS.gene000006.t1 | MTR_1g101390 | 31.841 | 201 | 122 | 3 | 2 | 188 | 26 | 225 | 1.90e-23 | 97.1 |
| MS.gene000006.t1 | MTR_0002s0020 | 28.230 | 209 | 130 | 3 | 6 | 195 | 24 | 231 | 7.41e-20 | 87.4 |
| MS.gene000006.t1 | MTR_4g102770 | 33.103 | 145 | 93 | 2 | 6 | 147 | 21 | 164 | 5.43e-18 | 82.0 |
| MS.gene000006.t1 | MTR_5g010800 | 32.192 | 146 | 92 | 4 | 6 | 147 | 19 | 161 | 6.94e-17 | 79.0 |
| MS.gene000006.t1 | MTR_1g079220 | 53.846 | 78 | 24 | 1 | 165 | 242 | 1 | 66 | 8.05e-17 | 73.9 |
| MS.gene000006.t1 | MTR_4g083970 | 26.000 | 200 | 115 | 5 | 80 | 277 | 122 | 290 | 3.64e-14 | 71.2 |
| MS.gene000006.t1 | MTR_1g079390 | 67.308 | 52 | 13 | 2 | 221 | 272 | 8 | 55 | 2.33e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000006.t1 | AT2G02360 | 42.391 | 276 | 135 | 7 | 4 | 276 | 14 | 268 | 1.25e-69 | 216 |
| MS.gene000006.t1 | AT1G80110 | 42.857 | 273 | 134 | 6 | 6 | 276 | 3 | 255 | 7.52e-63 | 198 |
| MS.gene000006.t1 | AT2G02340 | 40.143 | 279 | 148 | 6 | 4 | 276 | 36 | 301 | 3.86e-60 | 193 |
| MS.gene000006.t1 | AT1G09155 | 42.553 | 282 | 147 | 9 | 7 | 277 | 3 | 280 | 1.07e-59 | 191 |
| MS.gene000006.t1 | AT2G02240 | 40.511 | 274 | 144 | 5 | 4 | 276 | 61 | 316 | 1.84e-59 | 192 |
| MS.gene000006.t1 | AT2G02230 | 37.134 | 307 | 155 | 8 | 4 | 277 | 32 | 333 | 4.77e-57 | 186 |
| MS.gene000006.t1 | AT2G02250 | 38.406 | 276 | 148 | 8 | 4 | 276 | 47 | 303 | 5.40e-55 | 180 |
| MS.gene000006.t1 | AT1G56250 | 39.362 | 282 | 156 | 7 | 7 | 277 | 4 | 281 | 1.09e-52 | 173 |
| MS.gene000006.t1 | AT2G02350 | 36.559 | 279 | 155 | 8 | 2 | 276 | 22 | 282 | 6.90e-52 | 171 |
| MS.gene000006.t1 | AT1G56240 | 39.502 | 281 | 155 | 7 | 7 | 276 | 4 | 280 | 1.81e-51 | 170 |
| MS.gene000006.t1 | AT2G02320 | 37.410 | 278 | 146 | 10 | 6 | 276 | 42 | 298 | 3.25e-47 | 160 |
| MS.gene000006.t1 | AT2G02310 | 34.296 | 277 | 162 | 6 | 4 | 277 | 45 | 304 | 7.10e-47 | 159 |
| MS.gene000006.t1 | AT5G24560 | 42.708 | 192 | 97 | 4 | 4 | 192 | 3 | 184 | 6.45e-42 | 143 |
| MS.gene000006.t1 | AT2G02300 | 34.409 | 279 | 147 | 7 | 4 | 277 | 34 | 281 | 9.76e-41 | 142 |
| MS.gene000006.t1 | AT3G53000 | 28.522 | 291 | 165 | 7 | 3 | 276 | 20 | 284 | 2.23e-29 | 113 |
| MS.gene000006.t1 | AT2G02350 | 31.667 | 180 | 104 | 7 | 101 | 276 | 1 | 165 | 3.02e-22 | 91.3 |
| MS.gene000006.t1 | AT1G63090 | 30.000 | 230 | 130 | 8 | 3 | 216 | 25 | 239 | 1.68e-20 | 89.0 |
| MS.gene000006.t1 | AT1G12710 | 29.703 | 202 | 124 | 4 | 3 | 189 | 27 | 225 | 1.71e-19 | 86.3 |
| MS.gene000006.t1 | AT5G52120 | 28.372 | 215 | 133 | 4 | 1 | 195 | 18 | 231 | 1.85e-19 | 86.3 |
| MS.gene000006.t1 | AT3G61060 | 24.885 | 217 | 138 | 4 | 6 | 203 | 27 | 237 | 6.55e-18 | 82.0 |
| MS.gene000006.t1 | AT3G61060 | 23.963 | 217 | 141 | 3 | 6 | 203 | 27 | 238 | 1.34e-16 | 78.2 |
| MS.gene000006.t1 | AT1G12710 | 29.814 | 161 | 107 | 3 | 3 | 160 | 27 | 184 | 2.88e-13 | 69.3 |
Find 0 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTTATTAAAAAAAA+TGG | + | 23620:8770-8789 | MS.gene000006:intron | 0.0% |
| !! | AAACCATAATATTAAAATAA+CGG | + | 23620:8746-8765 | MS.gene000006:intron | 10.0% |
| !! | CATTAGATATATTATTAAAT+GGG | + | 23620:8171-8190 | MS.gene000006:intron | 10.0% |
| !! | CTTATTATATATTAATCAAT+TGG | - | 23620:8948-8967 | MS.gene000006:intergenic | 10.0% |
| !!! | AATTATTTTGATTAATTTGT+AGG | - | 23620:8201-8220 | MS.gene000006:intergenic | 10.0% |
| !!! | ATTATTTTGATTAATTTGTA+GGG | - | 23620:8200-8219 | MS.gene000006:intergenic | 10.0% |
| !! | AAAAGAAATAAAGTAGTAAA+TGG | + | 23620:9055-9074 | MS.gene000006:intron | 15.0% |
| !! | AATAAAAATGAGTAAATTTC+GGG | - | 23620:9523-9542 | MS.gene000006:intergenic | 15.0% |
| !! | ATTGATTGTTGTAAAATATA+TGG | + | 23620:9294-9313 | MS.gene000006:intron | 15.0% |
| !! | CAATAAAAATGAGTAAATTT+CGG | - | 23620:9524-9543 | MS.gene000006:intergenic | 15.0% |
| !! | GCATTAGATATATTATTAAA+TGG | + | 23620:8170-8189 | MS.gene000006:intron | 15.0% |
| !! | TGTGCAAAATAAATAAAAAT+AGG | + | 23620:9190-9209 | MS.gene000006:intron | 15.0% |
| !! | TTCAAATCAATTCTTATAAA+TGG | - | 23620:8487-8506 | MS.gene000006:intergenic | 15.0% |
| !!! | TAATTTTTGTGATGTAAATT+AGG | + | 23620:8371-8390 | MS.gene000006:intron | 15.0% |
| !!! | TTACCGTTATTTTAATATTA+TGG | - | 23620:8752-8771 | MS.gene000006:intergenic | 15.0% |
| !!! | TTATTTTGATTAATTTGTAG+GGG | - | 23620:8199-8218 | MS.gene000006:intergenic | 15.0% |
| !! | AAATAAATTACACACATATG+TGG | + | 23620:8643-8662 | MS.gene000006:intron | 20.0% |
| !! | AACAATGTTAAAACAAACAA+AGG | - | 23620:9562-9581 | MS.gene000006:intergenic | 20.0% |
| !! | AGTTATCATTGTACAATATA+TGG | + | 23620:9918-9937 | MS.gene000006:intron | 20.0% |
| !! | ATAAAAATGAGTAAATTTCG+GGG | - | 23620:9522-9541 | MS.gene000006:intergenic | 20.0% |
| !! | GAACAAACAAATAAACAAAA+TGG | - | 23620:8226-8245 | MS.gene000006:intergenic | 20.0% |
| !!! | AGTAACATTAATACTTTTGA+GGG | - | 23620:8464-8483 | MS.gene000006:intergenic | 20.0% |
| !!! | ATAACATGTATATTTTTTCC+TGG | + | 23620:9213-9232 | MS.gene000006:intron | 20.0% |
| !!! | CGAAATTTACTCATTTTTAT+TGG | + | 23620:9522-9541 | MS.gene000006:intron | 20.0% |
| !!! | TAACATGTATATTTTTTCCT+GGG | + | 23620:9214-9233 | MS.gene000006:intron | 20.0% |
| ! | AAGAGTGAAGTAAAATATTG+AGG | + | 23620:9166-9185 | MS.gene000006:intron | 25.0% |
| ! | AGAGTGAAGTAAAATATTGA+GGG | + | 23620:9167-9186 | MS.gene000006:intron | 25.0% |
| ! | AGTGAGAAGTTTATCATAAT+CGG | + | 23620:9877-9896 | MS.gene000006:intron | 25.0% |
| ! | ATATGAAATATCCAAGGAAA+TGG | - | 23620:9605-9624 | MS.gene000006:intergenic | 25.0% |
| ! | ATCATTTAGACGAGATAATA+AGG | - | 23620:8539-8558 | MS.gene000006:intergenic | 25.0% |
| ! | ATGTAAGCTATAGAAAATAC+AGG | - | 23620:8302-8321 | MS.gene000006:intergenic | 25.0% |
| ! | TAAAAATGAGTAAATTTCGG+GGG | - | 23620:9521-9540 | MS.gene000006:intergenic | 25.0% |
| ! | TAATAAGTTGTATTAGACAG+TGG | - | 23620:9857-9876 | MS.gene000006:intergenic | 25.0% |
| ! | TAGCACTAAAATTGTTTGTT+TGG | + | 23620:10360-10379 | MS.gene000006:CDS | 25.0% |
| ! | TATTAATCAATTGGAAGTTC+AGG | - | 23620:8939-8958 | MS.gene000006:intergenic | 25.0% |
| ! | TCATTTAGACGAGATAATAA+GGG | - | 23620:8538-8557 | MS.gene000006:intergenic | 25.0% |
| ! | TCTACTTCAGATAAAAGATT+TGG | + | 23620:8861-8880 | MS.gene000006:intron | 25.0% |
| ! | TGATACATATAATGTTTACC+TGG | + | 23620:8826-8845 | MS.gene000006:intron | 25.0% |
| ! | TTGATTGTTCTTTCATGTTA+GGG | + | 23620:7786-7805 | MS.gene000006:intron | 25.0% |
| !! | AATGCTAATAATATGCCTTT+TGG | + | 23620:9341-9360 | MS.gene000006:intron | 25.0% |
| !! | ATGCTAATAATATGCCTTTT+GGG | + | 23620:9342-9361 | MS.gene000006:intron | 25.0% |
| !! | GAGTAACATTAATACTTTTG+AGG | - | 23620:8465-8484 | MS.gene000006:intergenic | 25.0% |
| !! | GTTATTACTCTTTTTGATGT+TGG | + | 23620:10000-10019 | MS.gene000006:intron | 25.0% |
| !! | TTGAATGTAATCAAAAGTGT+CGG | - | 23620:8063-8082 | MS.gene000006:intergenic | 25.0% |
| !!! | AAACAATTTTAGTGCTACTA+TGG | - | 23620:10357-10376 | MS.gene000006:intergenic | 25.0% |
| !!! | AAACATATTTTTGTCTCTTC+TGG | - | 23620:9093-9112 | MS.gene000006:intergenic | 25.0% |
| !!! | AATAGAAGTATTCACTTAGA+AGG | - | 23620:9778-9797 | MS.gene000006:intergenic | 25.0% |
| !!! | GAGTTGTTTCAAAGTTTTTT+TGG | + | 23620:9962-9981 | MS.gene000006:intron | 25.0% |
| !!! | GATTTTTTCAATGCTTAGTT+CGG | + | 23620:9318-9337 | MS.gene000006:intron | 25.0% |
| AAAAATGAGTAAATTTCGGG+GGG | - | 23620:9520-9539 | MS.gene000005:intergenic | 30.0% | |
| AATGAGTGTTATCGAGATAA+AGG | + | 23620:10549-10568 | MS.gene000006:CDS | 30.0% | |
| ACTCAGATATGAAATATCCA+AGG | - | 23620:9611-9630 | MS.gene000006:intergenic | 30.0% | |
| AGCTGTAAATGATTTATGTG+AGG | + | 23620:9130-9149 | MS.gene000006:intron | 30.0% | |
| AGGATTCATAACATCACAAA+TGG | - | 23620:10099-10118 | MS.gene000006:intergenic | 30.0% | |
| AGTAGATACATCAAATTACC+AGG | - | 23620:8847-8866 | MS.gene000006:intergenic | 30.0% | |
| ATGACGATTGAAAACATGTT+TGG | + | 23620:8021-8040 | MS.gene000006:intron | 30.0% | |
| ATTATAATCTAACTCGACGA+GGG | - | 23620:8426-8445 | MS.gene000006:intergenic | 30.0% | |
| CTGTAAATGATTTATGTGAG+GGG | + | 23620:9132-9151 | MS.gene000006:intron | 30.0% | |
| CTTGTGTACAAATTGATTGA+TGG | + | 23620:10280-10299 | MS.gene000006:CDS | 30.0% | |
| GCTGTAAATGATTTATGTGA+GGG | + | 23620:9131-9150 | MS.gene000006:intron | 30.0% | |
| GTTAAAACAAACAAAGGAGA+AGG | - | 23620:9556-9575 | MS.gene000006:intergenic | 30.0% | |
| GTTGATTGTTCTTTCATGTT+AGG | + | 23620:7785-7804 | MS.gene000006:intron | 30.0% | |
| TATCTCGTCTAAATGATCTT+GGG | + | 23620:8542-8561 | MS.gene000006:intron | 30.0% | |
| TATTATAATCTAACTCGACG+AGG | - | 23620:8427-8446 | MS.gene000006:intergenic | 30.0% | |
| TGCATTTCAATATACCCAAA+AGG | - | 23620:9359-9378 | MS.gene000006:intergenic | 30.0% | |
| TTATCTCGATAACACTCATT+TGG | - | 23620:10549-10568 | MS.gene000006:intergenic | 30.0% | |
| TTATCTCGTCTAAATGATCT+TGG | + | 23620:8541-8560 | MS.gene000006:intron | 30.0% | |
| TTCTTGAAGGAATAGAAGTT+AGG | + | 23620:10602-10621 | MS.gene000006:CDS | 30.0% | |
| TTTCAATTGGATAGAAAGAG+TGG | + | 23620:9383-9402 | MS.gene000006:CDS | 30.0% | |
| ! | ACAAATTGATTGATGGCTAT+GGG | + | 23620:10287-10306 | MS.gene000006:CDS | 30.0% |
| ! | CATCATCGTCTGAAATATTA+GGG | + | 23620:7733-7752 | MS.gene000006:intron | 30.0% |
| ! | TACAAATTGATTGATGGCTA+TGG | + | 23620:10286-10305 | MS.gene000006:CDS | 30.0% |
| ! | TCATCATCGTCTGAAATATT+AGG | + | 23620:7732-7751 | MS.gene000006:intron | 30.0% |
| ! | TTTGGACTTCTTCATTTTCA+AGG | - | 23620:10531-10550 | MS.gene000006:intergenic | 30.0% |
| AAAACAAACAAAGGAGAAGG+TGG | - | 23620:9553-9572 | MS.gene000005:intergenic | 35.0% | |
| AAAATGAGTAAATTTCGGGG+GGG | - | 23620:9519-9538 | MS.gene000005:intergenic | 35.0% | |
| AACCTCAATAACAGTGATGT+TGG | + | 23620:9830-9849 | MS.gene000006:intron | 35.0% | |
| AAGACGAAGATTAGCAACTT+CGG | - | 23620:10188-10207 | MS.gene000006:intergenic | 35.0% | |
| AAGGGGAATTTCTTTCTTGA+AGG | + | 23620:10589-10608 | MS.gene000006:CDS | 35.0% | |
| AGATGAAAGTTTCCTTGATG+AGG | - | 23620:9659-9678 | MS.gene000006:intergenic | 35.0% | |
| ATACTGAGTATTTGGAGACA+AGG | - | 23620:10251-10270 | MS.gene000006:intergenic | 35.0% | |
| ATGGGAGAGTTCTTTAATTC+CGG | + | 23620:10505-10524 | MS.gene000006:CDS | 35.0% | |
| GAACTGAGAAAAAGTTGGAA+AGG | - | 23620:10119-10138 | MS.gene000006:intergenic | 35.0% | |
| GATTTATGTGAGGGGATATT+TGG | + | 23620:9140-9159 | MS.gene000006:intron | 35.0% | |
| TAAGCTGCATACTGAGTATT+TGG | - | 23620:10259-10278 | MS.gene000006:intergenic | 35.0% | |
| TAGATCTCTCACCATTGTTT+GGG | + | 23620:9430-9449 | MS.gene000006:CDS | 35.0% | |
| TCAGGTGTATGGTTAACTTT+GGG | - | 23620:9805-9824 | MS.gene000006:intergenic | 35.0% | |
| TCGGCCAATATACATTTACA+GGG | - | 23620:8261-8280 | MS.gene000006:intergenic | 35.0% | |
| TGAAATGCAGAGCTTTCAAT+TGG | + | 23620:9370-9389 | MS.gene000006:intron | 35.0% | |
| TGATCTTATTCTCCTCATCA+AGG | + | 23620:9644-9663 | MS.gene000006:intron | 35.0% | |
| TGCAAGAACTGAGAAAAAGT+TGG | - | 23620:10124-10143 | MS.gene000006:intergenic | 35.0% | |
| TGTGCCCTGTAAATGTATAT+TGG | + | 23620:8254-8273 | MS.gene000006:intron | 35.0% | |
| TGTTATTGAGGTTCAGATTC+AGG | - | 23620:9823-9842 | MS.gene000006:intergenic | 35.0% | |
| TTCAGGTGTATGGTTAACTT+TGG | - | 23620:9806-9825 | MS.gene000006:intergenic | 35.0% | |
| TTCGGCCAATATACATTTAC+AGG | - | 23620:8262-8281 | MS.gene000006:intergenic | 35.0% | |
| TTTCTATAGCTTACATCCAG+TGG | + | 23620:8306-8325 | MS.gene000006:intron | 35.0% | |
| ! | GCATAGTAGCAGATTTTCTT+CGG | - | 23620:8280-8299 | MS.gene000006:intergenic | 35.0% |
| !! | AAACATGTTTGGTGTATGAC+TGG | + | 23620:8032-8051 | MS.gene000006:intron | 35.0% |
| !! | TGAGATGATAGAGTTGATGT+CGG | - | 23620:7607-7626 | MS.gene000006:intergenic | 35.0% |
| !!! | TGTATATTTTTTCCTGGGTC+AGG | + | 23620:9219-9238 | MS.gene000006:intron | 35.0% |
| AAACGAACATGGTGGTTCAA+CGG | - | 23620:7953-7972 | MS.gene000005:intergenic | 40.0% | |
| AAATGAGTAAATTTCGGGGG+GGG | - | 23620:9518-9537 | MS.gene000005:intergenic | 40.0% | |
| AGACGAAGATTAGCAACTTC+GGG | - | 23620:10187-10206 | MS.gene000006:intergenic | 40.0% | |
| AGATCTCTCACCATTGTTTG+GGG | + | 23620:9431-9450 | MS.gene000006:CDS | 40.0% | |
| ATAAAGGCTGATGAGACCAA+GGG | + | 23620:10565-10584 | MS.gene000006:CDS | 40.0% | |
| CAGGTAACAATGCAGCAAAA+AGG | - | 23620:8920-8939 | MS.gene000006:intergenic | 40.0% | |
| CATCATCGACAATGGCAAAA+AGG | + | 23620:7695-7714 | MS.gene000006:CDS | 40.0% | |
| CATTGTTCTCTCTCCTTTCT+CGG | + | 23620:9575-9594 | MS.gene000006:intron | 40.0% | |
| CGATAGTTACACATTGACAG+CGG | - | 23620:8111-8130 | MS.gene000006:intergenic | 40.0% | |
| CTAGATCTCTCACCATTGTT+TGG | + | 23620:9429-9448 | MS.gene000006:CDS | 40.0% | |
| CTCTACAAGCTAAACGAACA+TGG | - | 23620:7964-7983 | MS.gene000006:intergenic | 40.0% | |
| GACCAACATCACTGTTATTG+AGG | - | 23620:9835-9854 | MS.gene000006:intergenic | 40.0% | |
| GGGTTTGAAGATTTAGCAGA+AGG | + | 23620:7462-7481 | MS.gene000006:CDS | 40.0% | |
| TACAAGCTAAACGAACATGG+TGG | - | 23620:7961-7980 | MS.gene000006:intergenic | 40.0% | |
| TGACAGATAAATCCACAGGA+AGG | - | 23620:10321-10340 | MS.gene000006:intergenic | 40.0% | |
| TGGATCTAAATGCAGAACTC+TGG | + | 23620:10380-10399 | MS.gene000006:CDS | 40.0% | |
| TGGCAGAACATAAGACCTTA+CGG | + | 23620:10400-10419 | MS.gene000006:CDS | 40.0% | |
| TTCCTAGTGTGAGAAGTGAT+GGG | + | 23620:10467-10486 | MS.gene000006:CDS | 40.0% | |
| TTGCCATTGTCGATGATGAT+AGG | - | 23620:7693-7712 | MS.gene000006:intergenic | 40.0% | |
| TTGCTAATCTTCGTCTTGTG+TGG | + | 23620:10191-10210 | MS.gene000006:CDS | 40.0% | |
| ! | ATGATCGATTTACACGCAGA+TGG | + | 23620:9002-9021 | MS.gene000006:intron | 40.0% |
| ! | CATCTCTGCAACTTTTGTGT+TGG | + | 23620:10153-10172 | MS.gene000006:intron | 40.0% |
| ! | CATTCAGAAGTGTAACTGCT+AGG | - | 23620:8004-8023 | MS.gene000006:intergenic | 40.0% |
| !! | ATGATAGAGTTGATGTCGGA+AGG | - | 23620:7603-7622 | MS.gene000006:intergenic | 40.0% |
| !! | GACTTCTTCATTTTCAAGGC+CGG | - | 23620:10527-10546 | MS.gene000006:intergenic | 40.0% |
| !! | GGTCTTGTTAGCTTAATTCG+AGG | - | 23620:8517-8536 | MS.gene000006:intergenic | 40.0% |
| !! | TGATAGAGTTGATGTCGGAA+GGG | - | 23620:7602-7621 | MS.gene000006:intergenic | 40.0% |
| AAAGAAATTCCCCTTGCCCT+TGG | - | 23620:10584-10603 | MS.gene000005:intergenic | 45.0% | |
| AATGAGTAAATTTCGGGGGG+GGG | - | 23620:9517-9536 | MS.gene000006:intergenic | 45.0% | |
| ACGCTGACAGATAAATCCAC+AGG | - | 23620:10325-10344 | MS.gene000006:intergenic | 45.0% | |
| AGATAGAGAGCCTTCTTGGA+AGG | - | 23620:7654-7673 | MS.gene000006:intergenic | 45.0% | |
| AGGAAATGGAATGCCGAGAA+AGG | - | 23620:9591-9610 | MS.gene000006:intergenic | 45.0% | |
| AGGGAGAAAGTGATTCCAGA+CGG | - | 23620:7583-7602 | MS.gene000006:intergenic | 45.0% | |
| ATGATGACCGCAATTGGATC+TGG | + | 23620:9456-9475 | MS.gene000006:CDS | 45.0% | |
| ATGGTGGTTCAACGGAACAT+CGG | - | 23620:7945-7964 | MS.gene000006:intergenic | 45.0% | |
| CACTTTCATGCCAGAGTAAG+AGG | + | 23620:10436-10455 | MS.gene000006:CDS | 45.0% | |
| CGACCTATCATCATCGACAA+TGG | + | 23620:7687-7706 | MS.gene000006:CDS | 45.0% | |
| CTAATCTTCGTCTTGTGTGG+TGG | + | 23620:10194-10213 | MS.gene000006:CDS | 45.0% | |
| CTATAGCTTACATCCAGTGG+TGG | + | 23620:8309-8328 | MS.gene000006:intron | 45.0% | |
| CTGGCATGAAAGTGAAACCT+CGG | - | 23620:10430-10449 | MS.gene000006:intergenic | 45.0% | |
| CTTCCTAGTGTGAGAAGTGA+TGG | + | 23620:10466-10485 | MS.gene000006:CDS | 45.0% | |
| GACGAAGATTAGCAACTTCG+GGG | - | 23620:10186-10205 | MS.gene000006:intergenic | 45.0% | |
| GAGGTTCAGATTCAGGTGTA+TGG | - | 23620:9816-9835 | MS.gene000006:intergenic | 45.0% | |
| GATAAAGGCTGATGAGACCA+AGG | + | 23620:10564-10583 | MS.gene000006:CDS | 45.0% | |
| GATGATAGGTCGACCAGATA+GGG | - | 23620:7679-7698 | MS.gene000006:intergenic | 45.0% | |
| GCAAGATGAACGACAATGTG+AGG | + | 23620:9681-9700 | MS.gene000006:intron | 45.0% | |
| GCTCTCTATCTTTCCCTATC+TGG | + | 23620:7663-7682 | MS.gene000006:CDS | 45.0% | |
| GGAAAGATAGAGAGCCTTCT+TGG | - | 23620:7658-7677 | MS.gene000006:intergenic | 45.0% | |
| GTCATCATCACCCCAAACAA+TGG | - | 23620:9444-9463 | MS.gene000006:intergenic | 45.0% | |
| TAAGACCTTACGGTTATCCG+AGG | + | 23620:10410-10429 | MS.gene000006:CDS | 45.0% | |
| TAGCAGTCCAGATCCAATTG+CGG | - | 23620:9466-9485 | MS.gene000006:intergenic | 45.0% | |
| TCACTTCTCACACTAGGAAG+CGG | - | 23620:10466-10485 | MS.gene000006:intergenic | 45.0% | |
| TGAAACCTCGGATAACCGTA+AGG | - | 23620:10418-10437 | MS.gene000006:intergenic | 45.0% | |
| TGAGCATTCGTATGTAGCCA+GGG | - | 23620:9274-9293 | MS.gene000006:intergenic | 45.0% | |
| TGATGATAGGTCGACCAGAT+AGG | - | 23620:7680-7699 | MS.gene000006:intergenic | 45.0% | |
| TGTGGTGGCTTGAAATTCGT+GGG | + | 23620:10209-10228 | MS.gene000006:CDS | 45.0% | |
| TGTGTGTGTGTGTGTTGTGT+CGG | + | 23620:8138-8157 | MS.gene000006:intron | 45.0% | |
| TTACACGCAGATGGATGACT+TGG | + | 23620:9011-9030 | MS.gene000006:intron | 45.0% | |
| TTCTCGGCATTCCATTTCCT+TGG | + | 23620:9591-9610 | MS.gene000006:intron | 45.0% | |
| TTGAGCATTCGTATGTAGCC+AGG | - | 23620:9275-9294 | MS.gene000006:intergenic | 45.0% | |
| ! | CTGCAACTTTTGTGTTGGAC+AGG | + | 23620:10158-10177 | MS.gene000006:intron | 45.0% |
| ! | GATTTATCTGTCAGCGTCGA+AGG | + | 23620:10328-10347 | MS.gene000006:CDS | 45.0% |
| AAAGTGATTCCAGACGGCGT+CGG | - | 23620:7577-7596 | MS.gene000005:intergenic | 50.0% | |
| AAGACTTTCCTTTCTGCCGC+TGG | + | 23620:7549-7568 | MS.gene000006:CDS | 50.0% | |
| AAGCGGCAATCCTCTTACTC+TGG | - | 23620:10449-10468 | MS.gene000006:intergenic | 50.0% | |
| AGCGGCAGAAAGGAAAGTCT+TGG | - | 23620:7550-7569 | MS.gene000006:intergenic | 50.0% | |
| AGTCGTACCTGACAGTATGG+CGG | - | 23620:7496-7515 | MS.gene000006:intergenic | 50.0% | |
| ATGAGTAAATTTCGGGGGGG+GGG | - | 23620:9516-9535 | MS.gene000006:intergenic | 50.0% | |
| CACCCATCACTTCTCACACT+AGG | - | 23620:10472-10491 | MS.gene000006:intergenic | 50.0% | |
| CATACTGTCAGGTACGACTC+CGG | + | 23620:7497-7516 | MS.gene000006:CDS | 50.0% | |
| GAGCATTCGTATGTAGCCAG+GGG | - | 23620:9273-9292 | MS.gene000006:intergenic | 50.0% | |
| GCGGAGCTATCCACACTTAA+GGG | - | 23620:9251-9270 | MS.gene000006:intergenic | 50.0% | |
| GGAAACGAGAGAGAGTCTGA+CGG | - | 23620:7529-7548 | MS.gene000006:intergenic | 50.0% | |
| GGGTGGTTGGAGATTGAGAT+GGG | + | 23620:10487-10506 | MS.gene000006:CDS | 50.0% | |
| GTGTGGTGGCTTGAAATTCG+TGG | + | 23620:10208-10227 | MS.gene000006:CDS | 50.0% | |
| TGCAAACGCTCCTTCCAAGA+AGG | + | 23620:7641-7660 | MS.gene000006:CDS | 50.0% | |
| TGGGTGGTTGGAGATTGAGA+TGG | + | 23620:10486-10505 | MS.gene000006:CDS | 50.0% | |
| TGGGTTTGACAACCTTCCTG+TGG | + | 23620:10306-10325 | MS.gene000006:CDS | 50.0% | |
| ! | CTAGTGTGAGAAGTGATGGG+TGG | + | 23620:10470-10489 | MS.gene000006:CDS | 50.0% |
| ! | GCAGATGGATGACTTGGCAT+AGG | + | 23620:9017-9036 | MS.gene000006:intron | 50.0% |
| ! | TTATCTGTCAGCGTCGAAGG+TGG | + | 23620:10331-10350 | MS.gene000006:CDS | 50.0% |
| !! | CTTGGAAGGAGCGTTTGCAA+GGG | - | 23620:7640-7659 | MS.gene000006:intergenic | 50.0% |
| !! | TCTTGGAAGGAGCGTTTGCA+AGG | - | 23620:7641-7660 | MS.gene000006:intergenic | 50.0% |
| !! | TGTGAGAAGTGATGGGTGGT+TGG | + | 23620:10474-10493 | MS.gene000006:CDS | 50.0% |
| !! | TTACATCCAGTGGTGGATCC+AGG | + | 23620:8316-8335 | MS.gene000006:intron | 50.0% |
| CAGGTGCACACCCTTAAGTG+TGG | + | 23620:9238-9257 | MS.gene000006:intron | 55.0% | |
| CATTCGTATGTAGCCAGGGG+CGG | - | 23620:9270-9289 | MS.gene000006:intergenic | 55.0% | |
| CGGAGTCGTACCTGACAGTA+TGG | - | 23620:7499-7518 | MS.gene000006:intergenic | 55.0% | |
| CTGATGAGACCAAGGGCAAG+GGG | + | 23620:10572-10591 | MS.gene000006:CDS | 55.0% | |
| GAGAGTCTGACGGCATCAAC+CGG | - | 23620:7519-7538 | MS.gene000006:intergenic | 55.0% | |
| GCTGATGAGACCAAGGGCAA+GGG | + | 23620:10571-10590 | MS.gene000006:CDS | 55.0% | |
| GGCGGAGCTATCCACACTTA+AGG | - | 23620:9252-9271 | MS.gene000006:intergenic | 55.0% | |
| GGTATGGCCAACCTGGAATC+AGG | - | 23620:9491-9510 | MS.gene000006:intergenic | 55.0% | |
| TGAGTAAATTTCGGGGGGGG+GGG | - | 23620:9515-9534 | MS.gene000006:intergenic | 55.0% | |
| TGCGTTTCCGCCATACTGTC+AGG | + | 23620:7486-7505 | MS.gene000006:CDS | 55.0% | |
| TGCTACGCCTGATTCCAGGT+TGG | + | 23620:9481-9500 | MS.gene000006:intron | 55.0% | |
| ! | ATAGTTTGCACCCCTGCTCC+AGG | - | 23620:8343-8362 | MS.gene000006:intergenic | 55.0% |
| ! | GGGGTGATGATGACCGCAAT+TGG | + | 23620:9450-9469 | MS.gene000006:CDS | 55.0% |
| !! | GAAGGAGCGTTTGCAAGGGA+AGG | - | 23620:7636-7655 | MS.gene000006:intergenic | 55.0% |
| AGTAAATTTCGGGGGGGGGG+GGG | - | 23620:9513-9532 | MS.gene000006:intergenic | 60.0% | |
| GAGTAAATTTCGGGGGGGGG+GGG | - | 23620:9514-9533 | MS.gene000006:intergenic | 60.0% | |
| GGACTGCTACGCCTGATTCC+AGG | + | 23620:9477-9496 | MS.gene000006:CDS | 60.0% | |
| GGCTGATGAGACCAAGGGCA+AGG | + | 23620:10570-10589 | MS.gene000006:CDS | 60.0% | |
| TGGATCCAGGACCTGGAGCA+GGG | + | 23620:8329-8348 | MS.gene000006:intron | 60.0% | |
| ! | TAAGGGTGTGCACCTGACCC+AGG | - | 23620:9234-9253 | MS.gene000006:intergenic | 60.0% |
| AGTGTGGATAGCTCCGCCCC+TGG | + | 23620:9254-9273 | MS.gene000006:intron | 65.0% | |
| CCAGGTCCTGGATCCACCAC+TGG | - | 23620:8325-8344 | MS.gene000006:intergenic | 65.0% | |
| CGTCGGAACCAGCGGCAGAA+AGG | - | 23620:7560-7579 | MS.gene000006:intergenic | 65.0% | |
| GGATCCAGGACCTGGAGCAG+GGG | + | 23620:8330-8349 | MS.gene000006:intron | 65.0% | |
| GTAAATTTCGGGGGGGGGGG+GGG | - | 23620:9512-9531 | MS.gene000006:intergenic | 65.0% | |
| GTGGATCCAGGACCTGGAGC+AGG | + | 23620:8328-8347 | MS.gene000006:intron | 65.0% | |
| !! | CCAGTGGTGGATCCAGGACC+TGG | + | 23620:8322-8341 | MS.gene000006:intron | 65.0% |
| TGCACCCCTGCTCCAGGTCC+TGG | - | 23620:8337-8356 | MS.gene000006:intergenic | 70.0% | |
| ! | CCAGACGGCGTCGGAACCAG+CGG | - | 23620:7568-7587 | MS.gene000006:intergenic | 70.0% |
| TTTCGGGGGGGGGGGGGGTA+TGG | - | 23620:9507-9526 | MS.gene000006:intergenic | 75.0% | |
| ! | GGGGGGGGGTATGGCCAACC+TGG | - | 23620:9498-9517 | MS.gene000006:intergenic | 75.0% |
| !! | CCGCTGGTTCCGACGCCGTC+TGG | + | 23620:7565-7584 | MS.gene000006:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 23620 | gene | 7456 | 10630 | 7456 | ID=MS.gene000006 |
| 23620 | mRNA | 7456 | 10630 | 7456 | ID=MS.gene000006.t1;Parent=MS.gene000006 |
| 23620 | exon | 7456 | 7716 | 7456 | ID=MS.gene000006.t1.exon1;Parent=MS.gene000006.t1 |
| 23620 | CDS | 7456 | 7716 | 7456 | ID=cds.MS.gene000006.t1;Parent=MS.gene000006.t1 |
| 23620 | exon | 9380 | 9498 | 9380 | ID=MS.gene000006.t1.exon2;Parent=MS.gene000006.t1 |
| 23620 | CDS | 9380 | 9498 | 9380 | ID=cds.MS.gene000006.t1;Parent=MS.gene000006.t1 |
| 23620 | exon | 10180 | 10630 | 10180 | ID=MS.gene000006.t1.exon3;Parent=MS.gene000006.t1 |
| 23620 | CDS | 10180 | 10630 | 10180 | ID=cds.MS.gene000006.t1;Parent=MS.gene000006.t1 |
| Gene Sequence |
| Protein sequence |
