Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52532.t1 | XP_003590874.1 | 87.3 | 268 | 30 | 1 | 1 | 268 | 1 | 264 | 1.50E-127 | 465.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52532.t1 | Q949S5 | 45.4 | 262 | 132 | 3 | 7 | 267 | 4 | 255 | 1.8e-54 | 214.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52532.t1 | G7I5K4 | 87.3 | 268 | 30 | 1 | 1 | 268 | 1 | 264 | 1.1e-127 | 465.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52532.t1 | MTR_1g079200 | 87.313 | 268 | 30 | 1 | 1 | 268 | 1 | 264 | 1.59e-171 | 474 |
MS.gene52532.t1 | MTR_1g079180 | 84.444 | 270 | 35 | 4 | 1 | 268 | 1 | 265 | 2.16e-161 | 448 |
MS.gene52532.t1 | MTR_1g079370 | 75.556 | 270 | 59 | 3 | 1 | 268 | 1 | 265 | 7.10e-146 | 409 |
MS.gene52532.t1 | MTR_1g100597 | 71.942 | 278 | 62 | 4 | 1 | 268 | 1 | 272 | 8.19e-136 | 384 |
MS.gene52532.t1 | MTR_1g079460 | 70.522 | 268 | 77 | 1 | 1 | 268 | 1 | 266 | 4.78e-133 | 377 |
MS.gene52532.t1 | MTR_1g079380 | 72.593 | 270 | 67 | 3 | 1 | 268 | 1 | 265 | 8.96e-128 | 365 |
MS.gene52532.t1 | MTR_1g079850 | 66.431 | 283 | 78 | 3 | 1 | 268 | 1 | 281 | 5.26e-125 | 357 |
MS.gene52532.t1 | MTR_1g079260 | 66.787 | 277 | 78 | 4 | 1 | 268 | 1 | 272 | 8.56e-125 | 356 |
MS.gene52532.t1 | MTR_1g079250 | 68.345 | 278 | 78 | 3 | 1 | 268 | 1 | 278 | 1.32e-120 | 347 |
MS.gene52532.t1 | MTR_1g079230 | 63.309 | 278 | 87 | 4 | 1 | 268 | 1 | 273 | 5.30e-117 | 337 |
MS.gene52532.t1 | MTR_1g100613 | 69.421 | 242 | 56 | 3 | 20 | 248 | 5 | 241 | 8.32e-113 | 325 |
MS.gene52532.t1 | MTR_1g026510 | 61.837 | 283 | 93 | 4 | 1 | 268 | 1 | 283 | 4.74e-112 | 325 |
MS.gene52532.t1 | MTR_3g006850 | 59.801 | 301 | 83 | 4 | 4 | 268 | 17 | 315 | 7.29e-111 | 322 |
MS.gene52532.t1 | MTR_3g452600 | 60.377 | 265 | 98 | 2 | 4 | 268 | 10 | 267 | 7.75e-104 | 303 |
MS.gene52532.t1 | MTR_1g079350 | 60.650 | 277 | 98 | 6 | 1 | 268 | 1 | 275 | 1.72e-99 | 292 |
MS.gene52532.t1 | MTR_3g450990 | 55.124 | 283 | 100 | 4 | 4 | 268 | 10 | 283 | 1.90e-92 | 275 |
MS.gene52532.t1 | MTR_2g079100 | 56.767 | 266 | 98 | 4 | 4 | 265 | 9 | 261 | 3.38e-92 | 273 |
MS.gene52532.t1 | MTR_1g079340 | 54.639 | 291 | 104 | 8 | 1 | 268 | 40 | 325 | 1.08e-88 | 266 |
MS.gene52532.t1 | MTR_1g079410 | 53.137 | 271 | 114 | 6 | 5 | 268 | 9 | 273 | 4.90e-87 | 260 |
MS.gene52532.t1 | MTR_1g078470 | 72.254 | 173 | 43 | 3 | 96 | 268 | 17 | 184 | 1.37e-84 | 251 |
MS.gene52532.t1 | MTR_7g096300 | 57.471 | 261 | 94 | 7 | 1 | 255 | 1 | 250 | 5.92e-82 | 261 |
MS.gene52532.t1 | MTR_1g079140 | 46.000 | 300 | 125 | 6 | 2 | 268 | 11 | 306 | 1.55e-74 | 230 |
MS.gene52532.t1 | MTR_1g079400 | 44.948 | 287 | 115 | 6 | 5 | 268 | 13 | 279 | 2.85e-70 | 218 |
MS.gene52532.t1 | MTR_1g079240 | 62.983 | 181 | 56 | 4 | 88 | 268 | 10 | 179 | 2.72e-64 | 199 |
MS.gene52532.t1 | MTR_7g112550 | 44.326 | 282 | 139 | 6 | 2 | 268 | 5 | 283 | 3.02e-64 | 202 |
MS.gene52532.t1 | MTR_1g083580 | 38.849 | 278 | 157 | 6 | 2 | 268 | 6 | 281 | 1.88e-55 | 180 |
MS.gene52532.t1 | MTR_1g079350 | 66.165 | 133 | 43 | 1 | 1 | 131 | 1 | 133 | 9.21e-50 | 163 |
MS.gene52532.t1 | MTR_7g112560 | 38.060 | 268 | 152 | 8 | 4 | 268 | 1 | 257 | 3.10e-47 | 158 |
MS.gene52532.t1 | MTR_1g076870 | 58.824 | 136 | 36 | 2 | 131 | 248 | 2 | 135 | 6.09e-46 | 151 |
MS.gene52532.t1 | MTR_4g023570 | 36.466 | 266 | 139 | 7 | 4 | 268 | 1 | 237 | 7.46e-44 | 149 |
MS.gene52532.t1 | MTR_2g042540 | 70.093 | 107 | 29 | 2 | 1 | 106 | 1 | 105 | 3.36e-41 | 139 |
MS.gene52532.t1 | MTR_1g079130 | 43.005 | 193 | 78 | 5 | 104 | 268 | 1 | 189 | 6.86e-38 | 132 |
MS.gene52532.t1 | MTR_7g096310 | 58.824 | 119 | 41 | 3 | 60 | 176 | 38 | 150 | 1.69e-33 | 120 |
MS.gene52532.t1 | MTR_1g079210 | 55.200 | 125 | 40 | 2 | 132 | 242 | 7 | 129 | 1.96e-33 | 119 |
MS.gene52532.t1 | MTR_3g058640 | 57.843 | 102 | 41 | 1 | 131 | 232 | 7 | 106 | 4.46e-32 | 114 |
MS.gene52532.t1 | MTR_1g078460 | 68.889 | 90 | 25 | 1 | 1 | 90 | 64 | 150 | 2.16e-30 | 111 |
MS.gene52532.t1 | MTR_7g103380 | 26.182 | 275 | 178 | 7 | 6 | 267 | 21 | 283 | 3.51e-28 | 109 |
MS.gene52532.t1 | MTR_1g079220 | 70.588 | 68 | 18 | 1 | 168 | 235 | 1 | 66 | 5.91e-24 | 92.4 |
MS.gene52532.t1 | MTR_0113s0040 | 28.014 | 282 | 163 | 7 | 2 | 268 | 20 | 276 | 1.26e-23 | 97.4 |
MS.gene52532.t1 | MTR_0002s0020 | 25.806 | 279 | 164 | 7 | 6 | 265 | 24 | 278 | 3.98e-19 | 85.1 |
MS.gene52532.t1 | MTR_1g101390 | 27.881 | 269 | 178 | 8 | 2 | 267 | 26 | 281 | 4.82e-19 | 84.7 |
MS.gene52532.t1 | MTR_4g102770 | 32.877 | 146 | 97 | 1 | 6 | 151 | 21 | 165 | 8.76e-18 | 81.3 |
MS.gene52532.t1 | MTR_5g010800 | 26.515 | 264 | 180 | 7 | 6 | 267 | 19 | 270 | 2.60e-17 | 80.1 |
MS.gene52532.t1 | MTR_4g083970 | 25.962 | 208 | 130 | 6 | 66 | 268 | 102 | 290 | 2.66e-16 | 77.4 |
MS.gene52532.t1 | MTR_1g079390 | 72.000 | 50 | 12 | 2 | 214 | 263 | 8 | 55 | 2.70e-15 | 68.9 |
MS.gene52532.t1 | MTR_1g050352 | 51.807 | 83 | 32 | 4 | 26 | 105 | 46 | 123 | 4.73e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52532.t1 | AT1G80110 | 45.420 | 262 | 132 | 3 | 7 | 267 | 4 | 255 | 7.47e-70 | 216 |
MS.gene52532.t1 | AT2G02360 | 42.322 | 267 | 139 | 6 | 4 | 267 | 14 | 268 | 4.37e-69 | 214 |
MS.gene52532.t1 | AT2G02240 | 41.199 | 267 | 143 | 5 | 4 | 267 | 61 | 316 | 6.12e-59 | 190 |
MS.gene52532.t1 | AT2G02340 | 39.560 | 273 | 155 | 6 | 1 | 267 | 33 | 301 | 3.68e-58 | 187 |
MS.gene52532.t1 | AT2G02250 | 40.299 | 268 | 145 | 6 | 4 | 267 | 47 | 303 | 1.42e-55 | 181 |
MS.gene52532.t1 | AT1G09155 | 40.278 | 288 | 136 | 9 | 7 | 268 | 3 | 280 | 4.77e-54 | 177 |
MS.gene52532.t1 | AT2G02230 | 34.516 | 310 | 154 | 7 | 2 | 268 | 30 | 333 | 3.10e-52 | 173 |
MS.gene52532.t1 | AT1G56250 | 40.141 | 284 | 142 | 9 | 7 | 268 | 4 | 281 | 1.04e-49 | 165 |
MS.gene52532.t1 | AT2G02310 | 35.075 | 268 | 163 | 5 | 4 | 268 | 45 | 304 | 6.14e-48 | 161 |
MS.gene52532.t1 | AT1G56240 | 39.146 | 281 | 147 | 9 | 7 | 267 | 4 | 280 | 1.76e-47 | 159 |
MS.gene52532.t1 | AT2G02350 | 36.567 | 268 | 157 | 7 | 4 | 267 | 24 | 282 | 6.52e-47 | 158 |
MS.gene52532.t1 | AT2G02320 | 37.037 | 270 | 149 | 9 | 6 | 267 | 42 | 298 | 1.05e-46 | 158 |
MS.gene52532.t1 | AT2G02300 | 35.294 | 272 | 145 | 8 | 4 | 268 | 34 | 281 | 7.12e-40 | 140 |
MS.gene52532.t1 | AT5G24560 | 37.245 | 196 | 107 | 4 | 4 | 197 | 3 | 184 | 2.72e-35 | 125 |
MS.gene52532.t1 | AT3G53000 | 29.603 | 277 | 165 | 9 | 6 | 267 | 23 | 284 | 3.59e-31 | 117 |
MS.gene52532.t1 | AT2G02350 | 33.929 | 168 | 104 | 5 | 104 | 267 | 1 | 165 | 5.13e-22 | 90.5 |
MS.gene52532.t1 | AT3G61060 | 24.242 | 264 | 189 | 5 | 6 | 268 | 27 | 280 | 9.28e-18 | 81.3 |
MS.gene52532.t1 | AT3G61060 | 23.485 | 264 | 192 | 4 | 6 | 268 | 27 | 281 | 3.10e-17 | 80.1 |
MS.gene52532.t1 | AT5G52120 | 32.692 | 156 | 99 | 2 | 1 | 151 | 18 | 172 | 9.82e-17 | 78.6 |
MS.gene52532.t1 | AT1G63090 | 27.547 | 265 | 176 | 9 | 6 | 267 | 28 | 279 | 7.14e-16 | 76.3 |
MS.gene52532.t1 | AT1G12710 | 24.364 | 275 | 172 | 6 | 6 | 267 | 30 | 281 | 8.59e-15 | 73.2 |
MS.gene52532.t1 | AT4G19850 | 28.022 | 182 | 99 | 7 | 97 | 268 | 59 | 218 | 2.62e-13 | 67.8 |
MS.gene52532.t1 | AT4G19850 | 28.962 | 183 | 96 | 8 | 97 | 268 | 17 | 176 | 2.97e-13 | 66.6 |
MS.gene52532.t1 | AT1G65390 | 27.374 | 179 | 107 | 5 | 94 | 268 | 251 | 410 | 1.01e-11 | 65.1 |
MS.gene52532.t1 | AT4G19840 | 24.603 | 252 | 139 | 9 | 47 | 268 | 15 | 245 | 3.58e-11 | 62.0 |
Find 67 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGAACTTCTTTATCTTCT+AGG | 0.116706 | 1.3:+56269348 | None:intergenic |
AGCTGCATACTGAGTGTTTC+GGG | 0.254063 | 1.3:+56269592 | None:intergenic |
TGTTGCCCACCTTCCACATT+TGG | 0.295277 | 1.3:+56269455 | None:intergenic |
ATCGGGGAGTTCTTCAATTC+AGG | 0.312491 | 1.3:-56269371 | MS.gene52532:CDS |
GATAACACCACGGGATAGTT+TGG | 0.336653 | 1.3:+56269527 | None:intergenic |
TGATCATTGTCGATGATGAT+AGG | 0.340168 | 1.3:+56271664 | None:intergenic |
CCGCCGATTCCGACGCCGTC+TGG | 0.340798 | 1.3:-56271798 | MS.gene52532:CDS |
ACAAGAAGCTCAGCGACTTC+AGG | 0.347960 | 1.3:+56269662 | None:intergenic |
TAGATCTCTCGCCATTGATT+GGG | 0.352783 | 1.3:-56271449 | MS.gene52532:CDS |
CTTGTGTTCAAGATGATTGA+TGG | 0.366427 | 1.3:-56269566 | MS.gene52532:CDS |
AGAAGTTCAAATGAATATAA+AGG | 0.377032 | 1.3:-56269336 | MS.gene52532:CDS |
GACAGAGTTTGAGGAATTGC+CGG | 0.379323 | 1.3:-56271905 | MS.gene52532:CDS |
GGATTTCTATGCCTAATTCC+AGG | 0.380639 | 1.3:-56271402 | MS.gene52532:intron |
CTAGATCTCTCGCCATTGAT+TGG | 0.391247 | 1.3:-56271450 | MS.gene52532:CDS |
TGAAATTCAGAGCTTTCAAT+TGG | 0.394466 | 1.3:-56271509 | MS.gene52532:intron |
TAGTACTAAAATTGTCTGTT+TGG | 0.397688 | 1.3:-56269480 | MS.gene52532:CDS |
GGGTGGTTGGAGATTGAAAT+CGG | 0.403576 | 1.3:-56269389 | MS.gene52532:CDS |
CAAAAGAATGACAGAGTTTG+AGG | 0.409289 | 1.3:-56271914 | None:intergenic |
AAGCTGCATACTGAGTGTTT+CGG | 0.411984 | 1.3:+56269591 | None:intergenic |
AAGTGTGGTCTCTTTCTTGA+AGG | 0.415452 | 1.3:-56269293 | MS.gene52532:CDS |
ATCTAAGCTAACCTGGAATT+AGG | 0.417358 | 1.3:+56271391 | None:intergenic |
TTCTTGAAGGAATCGAAGTC+AGG | 0.419195 | 1.3:-56269280 | MS.gene52532:CDS |
ATGATAGACGCTATTGGAAC+TGG | 0.420013 | 1.3:-56271423 | MS.gene52532:CDS |
ATTCCAGACGGCGTCGGAAT+CGG | 0.451722 | 1.3:+56271795 | None:intergenic |
CGGAGTTGTGCGAGAGAGAA+TGG | 0.455681 | 1.3:+56271867 | None:intergenic |
GGTGGTTGGAGATTGAAATC+GGG | 0.460102 | 1.3:-56269388 | MS.gene52532:CDS |
ATGGCGGAAATGTAACCTTC+CGG | 0.467195 | 1.3:+56271886 | None:intergenic |
GTTACTTAATTGTCTTACTT+AGG | 0.474668 | 1.3:+56269257 | None:intergenic |
CAAGAAGCTCAGCGACTTCA+GGG | 0.475210 | 1.3:+56269663 | None:intergenic |
CGGCCTAGTGTGAGAAGCGA+TGG | 0.477390 | 1.3:-56269410 | MS.gene52532:CDS |
GAGAGTCTGCCGGCGTCAGC+CGG | 0.494209 | 1.3:+56271847 | None:intergenic |
GGCGGCAGAAAGGAAAGTCT+TGG | 0.517109 | 1.3:+56271816 | None:intergenic |
TCTATCATCACCCCAATCAA+TGG | 0.521541 | 1.3:+56271438 | None:intergenic |
TTCAAGATGATTGATGGCTA+TGG | 0.530465 | 1.3:-56269560 | MS.gene52532:CDS |
GGGGTGATGATAGACGCTAT+TGG | 0.540557 | 1.3:-56271429 | MS.gene52532:CDS |
CACCCATCGCTTCTCACACT+AGG | 0.546742 | 1.3:+56269407 | None:intergenic |
CGTCGGAATCGGCGGCAGAA+AGG | 0.549047 | 1.3:+56271806 | None:intergenic |
CATTCTCTCTCGCACAACTC+CGG | 0.556161 | 1.3:-56271866 | MS.gene52532:CDS |
GATCATTGTCGATGATGATA+GGG | 0.558501 | 1.3:+56271665 | None:intergenic |
TTTCAATTGGATAGAAAGAG+TGG | 0.567809 | 1.3:-56271496 | MS.gene52532:CDS |
GGGCAACATAACAGCGCAGT+AGG | 0.570300 | 1.3:-56269440 | MS.gene52532:CDS |
GGAAACAACGGAGAGTCTGC+CGG | 0.570524 | 1.3:+56271837 | None:intergenic |
GTAGGAGCGTTGGCAAGTGA+AGG | 0.572663 | 1.3:+56271721 | None:intergenic |
GTGTTATCAATTTGTGTCGA+AGG | 0.573911 | 1.3:-56269512 | MS.gene52532:CDS |
TGTGAGAAGCGATGGGTGGT+TGG | 0.576323 | 1.3:-56269402 | MS.gene52532:CDS |
CCAGACGGCGTCGGAATCGG+CGG | 0.580387 | 1.3:+56271798 | None:intergenic |
CGCACAACTCCGGCTGACGC+CGG | 0.587266 | 1.3:-56271856 | MS.gene52532:CDS |
AGATCTCTCGCCATTGATTG+GGG | 0.587403 | 1.3:-56271448 | MS.gene52532:CDS |
CATCATCGACAATGATCAGA+AGG | 0.590425 | 1.3:-56271659 | MS.gene52532:intron |
ACACAAATTGATAACACCAC+GGG | 0.605212 | 1.3:+56269518 | None:intergenic |
TTATCAATTTGTGTCGAAGG+TGG | 0.608233 | 1.3:-56269509 | MS.gene52532:CDS |
GTGGTTGGAGATTGAAATCG+GGG | 0.611248 | 1.3:-56269387 | MS.gene52532:CDS |
GATGATTATAATTCGAAGTG+TGG | 0.621156 | 1.3:-56269308 | MS.gene52532:CDS |
TGTCTGTTTGGATCCAAATG+TGG | 0.625217 | 1.3:-56269468 | MS.gene52532:CDS |
GAGTTTGAGGAATTGCCGGA+AGG | 0.635608 | 1.3:-56271901 | MS.gene52532:CDS |
GGCCTAGTGTGAGAAGCGAT+GGG | 0.643186 | 1.3:-56269409 | MS.gene52532:CDS |
TGGATCCAAATGTGGAAGGT+GGG | 0.645556 | 1.3:-56269460 | MS.gene52532:CDS |
AAAGTGATTCCAGACGGCGT+CGG | 0.649267 | 1.3:+56271789 | None:intergenic |
AGAAAGAAAGTGATTCCAGA+CGG | 0.655957 | 1.3:+56271783 | None:intergenic |
ACAGCGCAGTAGGATTGCAA+CGG | 0.659500 | 1.3:-56269430 | MS.gene52532:CDS |
GACACAAATTGATAACACCA+CGG | 0.662112 | 1.3:+56269517 | None:intergenic |
TTGGATCCAAATGTGGAAGG+TGG | 0.663222 | 1.3:-56269461 | MS.gene52532:CDS |
AAGGAAAGTCTTGGAAACAA+CGG | 0.668714 | 1.3:+56271825 | None:intergenic |
TGTTTGGATCCAAATGTGGA+AGG | 0.673961 | 1.3:-56269464 | MS.gene52532:CDS |
TCAGAATCCAAACTATCCCG+TGG | 0.688070 | 1.3:-56269534 | MS.gene52532:CDS |
CTAGTGTGAGAAGCGATGGG+TGG | 0.709944 | 1.3:-56269406 | MS.gene52532:CDS |
AGTTGTGCGAGAGAGAATGG+CGG | 0.737972 | 1.3:+56271870 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGACATAATAATAATAGTTA+AGG | + | chr1.3:56271289-56271308 | None:intergenic | 15.0% |
!! | TGATACATTGAAAAATAAAT+AGG | + | chr1.3:56270450-56270469 | None:intergenic | 15.0% |
!!! | ACTAAATTTTGTATTCATAA+AGG | + | chr1.3:56269878-56269897 | None:intergenic | 15.0% |
!!! | CTATATTTGAAACTTAATTA+TGG | + | chr1.3:56270806-56270825 | None:intergenic | 15.0% |
!!! | TACATCTCTATTTTTTATTT+GGG | + | chr1.3:56271431-56271450 | None:intergenic | 15.0% |
!!! | TTACATCTCTATTTTTTATT+TGG | + | chr1.3:56271432-56271451 | None:intergenic | 15.0% |
!! | AGAAGTTCAAATGAATATAA+AGG | - | chr1.3:56271842-56271861 | MS.gene52532:CDS | 20.0% |
!! | AGCATATATAACTTATTAAC+TGG | - | chr1.3:56271320-56271339 | MS.gene52532:intron | 20.0% |
!! | AGTAAATTTCAAAGAAAACA+TGG | + | chr1.3:56271168-56271187 | None:intergenic | 20.0% |
!! | AGTTGCAAATATTAGAATAT+AGG | + | chr1.3:56271483-56271502 | None:intergenic | 20.0% |
!! | ATGAATACAAAATTTAGTTG+AGG | - | chr1.3:56269880-56269899 | MS.gene52532:intron | 20.0% |
!! | ATGAGAAATTCAATAATCAA+AGG | + | chr1.3:56270040-56270059 | None:intergenic | 20.0% |
!! | CATTGAAAAATAAATAGGAT+TGG | + | chr1.3:56270445-56270464 | None:intergenic | 20.0% |
!! | GCATATATAACTTATTAACT+GGG | - | chr1.3:56271321-56271340 | MS.gene52532:intron | 20.0% |
!!! | AAATTTTGTATTCATAAAGG+CGG | + | chr1.3:56269875-56269894 | None:intergenic | 20.0% |
!!! | ATTATCAATAGCTTTTTTTC+TGG | + | chr1.3:56269607-56269626 | None:intergenic | 20.0% |
!!! | ATTTGAAACTTAATTATGGA+AGG | + | chr1.3:56270802-56270821 | None:intergenic | 20.0% |
!!! | TTTGAAACTTAATTATGGAA+GGG | + | chr1.3:56270801-56270820 | None:intergenic | 20.0% |
!!! | TTTGAAATTTACTTTTGACT+TGG | - | chr1.3:56271175-56271194 | MS.gene52532:intron | 20.0% |
! | ATATAACTTATTAACTGGGT+AGG | - | chr1.3:56271325-56271344 | MS.gene52532:intron | 25.0% |
! | ATTCTAATATTTGCAACTGT+TGG | - | chr1.3:56271485-56271504 | MS.gene52532:CDS | 25.0% |
! | CAATTAGGATAAAAAACCTA+TGG | + | chr1.3:56270413-56270432 | None:intergenic | 25.0% |
! | TAATAGACTATATCAAGATG+AGG | + | chr1.3:56270990-56271009 | None:intergenic | 25.0% |
! | TAGTACTAAAATTGTCTGTT+TGG | - | chr1.3:56271698-56271717 | MS.gene52532:CDS | 25.0% |
! | TTTCAAAGAAAACATGGTAT+TGG | + | chr1.3:56271162-56271181 | None:intergenic | 25.0% |
! | TTTGAACTTCTTTATCTTCT+AGG | + | chr1.3:56271833-56271852 | None:intergenic | 25.0% |
!!! | AGACAATTTTAGTACTATCA+TGG | + | chr1.3:56271695-56271714 | None:intergenic | 25.0% |
!!! | GAGCAGAGATTTTAAAAATT+TGG | + | chr1.3:56270478-56270497 | None:intergenic | 25.0% |
!!! | TTTTTTGGCTTCATATTAGT+GGG | - | chr1.3:56271541-56271560 | MS.gene52532:intron | 25.0% |
AACTGCATCATTAAAGATGA+AGG | + | chr1.3:56270378-56270397 | None:intergenic | 30.0% | |
AATATTTGCAACTGTTGGAT+AGG | - | chr1.3:56271490-56271509 | MS.gene52532:CDS | 30.0% | |
AATCTCAACACAACAATCAT+TGG | + | chr1.3:56269950-56269969 | None:intergenic | 30.0% | |
ACAAATATTTGATGTCCCTA+TGG | - | chr1.3:56270131-56270150 | MS.gene52532:intron | 30.0% | |
ACTTAATATCTAAGCTAACC+TGG | + | chr1.3:56269797-56269816 | None:intergenic | 30.0% | |
AGGGGAGAAAATATGAAATT+TGG | - | chr1.3:56269572-56269591 | MS.gene52532:CDS | 30.0% | |
AGTTATTGCTTCATTTCCAT+AGG | - | chr1.3:56270394-56270413 | MS.gene52532:intron | 30.0% | |
ATGATGTCAACAAAATGAGT+CGG | - | chr1.3:56270943-56270962 | MS.gene52532:intron | 30.0% | |
ATTGATACTAAAATCGAGGA+AGG | - | chr1.3:56269920-56269939 | MS.gene52532:intron | 30.0% | |
CAAAATTTAGTTGAGGCAAA+TGG | - | chr1.3:56269887-56269906 | MS.gene52532:intron | 30.0% | |
CAACTTGAATGTAATAAGCA+TGG | + | chr1.3:56270753-56270772 | None:intergenic | 30.0% | |
GATGATTATAATTCGAAGTG+TGG | - | chr1.3:56271870-56271889 | MS.gene52532:CDS | 30.0% | |
TCATTAAAGATGAAGGATCT+TGG | + | chr1.3:56270371-56270390 | None:intergenic | 30.0% | |
TGAAATTCAGAGCTTTCAAT+TGG | - | chr1.3:56269669-56269688 | MS.gene52532:CDS | 30.0% | |
TTCAGATTTCTAATAAGCCT+TGG | - | chr1.3:56269640-56269659 | MS.gene52532:CDS | 30.0% | |
TTTCAATTGGATAGAAAGAG+TGG | - | chr1.3:56269682-56269701 | MS.gene52532:intron | 30.0% | |
! | AAATTTGGGTTTGAAATCGA+GGG | + | chr1.3:56270082-56270101 | None:intergenic | 30.0% |
! | ACTGAACGTGCTTTAAATTT+GGG | + | chr1.3:56270096-56270115 | None:intergenic | 30.0% |
! | AGAAACACATTTTAAGCCAT+AGG | + | chr1.3:56270150-56270169 | None:intergenic | 30.0% |
! | CAAGTTGAACACTATTATAC+TGG | - | chr1.3:56270896-56270915 | MS.gene52532:intron | 30.0% |
! | GAAACACATTTTAAGCCATA+GGG | + | chr1.3:56270149-56270168 | None:intergenic | 30.0% |
! | TAAATTTGGGTTTGAAATCG+AGG | + | chr1.3:56270083-56270102 | None:intergenic | 30.0% |
! | TTACAATTCTCCTCATTTTC+TGG | - | chr1.3:56270012-56270031 | MS.gene52532:intron | 30.0% |
!!! | GTTTTTTGGCTTCATATTAG+TGG | - | chr1.3:56271540-56271559 | MS.gene52532:intron | 30.0% |
AACAATGTGTAGCAATACCA+AGG | + | chr1.3:56270547-56270566 | None:intergenic | 35.0% | |
AAGGAAAGTCTTGGAAACAA+CGG | + | chr1.3:56269356-56269375 | None:intergenic | 35.0% | |
AGAAAGAAAGTGATTCCAGA+CGG | + | chr1.3:56269398-56269417 | None:intergenic | 35.0% | |
AGATAGATGAGTGAATAGCA+TGG | + | chr1.3:56270323-56270342 | None:intergenic | 35.0% | |
ATATCAAGATGAGGACTACA+AGG | + | chr1.3:56270981-56271000 | None:intergenic | 35.0% | |
ATCAAAGGAACCAGAAAATG+AGG | + | chr1.3:56270025-56270044 | None:intergenic | 35.0% | |
ATCTAAGCTAACCTGGAATT+AGG | + | chr1.3:56269790-56269809 | None:intergenic | 35.0% | |
ATGGAAGGGATGTCAAAAAA+TGG | + | chr1.3:56270787-56270806 | None:intergenic | 35.0% | |
CTTCCAGTGTTGTCAAATAT+TGG | - | chr1.3:56270178-56270197 | MS.gene52532:intron | 35.0% | |
CTTGTGTTCAAGATGATTGA+TGG | - | chr1.3:56271612-56271631 | MS.gene52532:intron | 35.0% | |
GATCATTGTCGATGATGATA+GGG | + | chr1.3:56269516-56269535 | None:intergenic | 35.0% | |
GCAATACCAAGGCTTAAAAA+AGG | + | chr1.3:56270536-56270555 | None:intergenic | 35.0% | |
GGCTATTGATACTAAAATCG+AGG | - | chr1.3:56269916-56269935 | MS.gene52532:intron | 35.0% | |
GTGTTATCAATTTGTGTCGA+AGG | - | chr1.3:56271666-56271685 | MS.gene52532:CDS | 35.0% | |
TAGCCAATATTTGACAACAC+TGG | + | chr1.3:56270184-56270203 | None:intergenic | 35.0% | |
TCTGAATTTCAACACATCCA+AGG | + | chr1.3:56269660-56269679 | None:intergenic | 35.0% | |
TGATCATTGTCGATGATGAT+AGG | + | chr1.3:56269517-56269536 | None:intergenic | 35.0% | |
TGGAAGGGATGTCAAAAAAT+GGG | + | chr1.3:56270786-56270805 | None:intergenic | 35.0% | |
TTATCAATTTGTGTCGAAGG+TGG | - | chr1.3:56271669-56271688 | MS.gene52532:CDS | 35.0% | |
! | ACACAAATTGATAACACCAC+GGG | + | chr1.3:56271663-56271682 | None:intergenic | 35.0% |
! | GACACAAATTGATAACACCA+CGG | + | chr1.3:56271664-56271683 | None:intergenic | 35.0% |
! | GACTGAACGTGCTTTAAATT+TGG | + | chr1.3:56270097-56270116 | None:intergenic | 35.0% |
! | GTGTTGTCAAATATTGGCTA+TGG | - | chr1.3:56270184-56270203 | MS.gene52532:intron | 35.0% |
! | TTCAAGATGATTGATGGCTA+TGG | - | chr1.3:56271618-56271637 | MS.gene52532:intron | 35.0% |
! | TTGTCAAATATTGGCTATGG+TGG | - | chr1.3:56270187-56270206 | MS.gene52532:intron | 35.0% |
!!! | AGATACAGAGCTTTTTTGGT+AGG | + | chr1.3:56269478-56269497 | None:intergenic | 35.0% |
!!! | AGCAAGATACAGAGCTTTTT+TGG | + | chr1.3:56269482-56269501 | None:intergenic | 35.0% |
!!! | ATACTTTTTTCTTTGTGCCG+TGG | - | chr1.3:56270242-56270261 | MS.gene52532:intron | 35.0% |
!!! | CTGAGCTTCTTGTTGTTTTT+TGG | - | chr1.3:56271526-56271545 | MS.gene52532:intron | 35.0% |
AAATTGTTTGGGCTAAGGGT+TGG | - | chr1.3:56271350-56271369 | MS.gene52532:intron | 40.0% | |
AACAAATGAACGTCTGAGTG+AGG | + | chr1.3:56271224-56271243 | None:intergenic | 40.0% | |
AAGCTGCATACTGAGTGTTT+CGG | + | chr1.3:56271590-56271609 | None:intergenic | 40.0% | |
AAGTGTGGTCTCTTTCTTGA+AGG | - | chr1.3:56271885-56271904 | MS.gene52532:CDS | 40.0% | |
ACTGGGTAGGTCAAATTGTT+TGG | - | chr1.3:56271338-56271357 | MS.gene52532:intron | 40.0% | |
AGGTCAAATTGTTTGGGCTA+AGG | - | chr1.3:56271345-56271364 | MS.gene52532:intron | 40.0% | |
AGTTGAGGCAAATGGATAAG+TGG | - | chr1.3:56269895-56269914 | MS.gene52532:intron | 40.0% | |
ATGATAGACGCTATTGGAAC+TGG | - | chr1.3:56269755-56269774 | MS.gene52532:intron | 40.0% | |
CATCATCGACAATGATCAGA+AGG | - | chr1.3:56269519-56269538 | MS.gene52532:CDS | 40.0% | |
CTGGGTAGGTCAAATTGTTT+GGG | - | chr1.3:56271339-56271358 | MS.gene52532:intron | 40.0% | |
GGAAGGGATGTCAAAAAATG+GGG | + | chr1.3:56270785-56270804 | None:intergenic | 40.0% | |
GGATTTCTATGCCTAATTCC+AGG | - | chr1.3:56269776-56269795 | MS.gene52532:intron | 40.0% | |
GGTCAAATTGTTTGGGCTAA+GGG | - | chr1.3:56271346-56271365 | MS.gene52532:intron | 40.0% | |
TAAAGCACGTTCAGTCAAAC+CGG | - | chr1.3:56270101-56270120 | MS.gene52532:intron | 40.0% | |
TAATCTCCGACAACAAGGAA+GGG | - | chr1.3:56269553-56269572 | MS.gene52532:CDS | 40.0% | |
TCAAATATTTGTCCGAGCAC+CGG | + | chr1.3:56270123-56270142 | None:intergenic | 40.0% | |
TCTATCATCACCCCAATCAA+TGG | + | chr1.3:56269743-56269762 | None:intergenic | 40.0% | |
TCTTGTAATCTCCGACAACA+AGG | - | chr1.3:56269548-56269567 | MS.gene52532:CDS | 40.0% | |
TGTAATAAGCATGGCAGACA+AGG | + | chr1.3:56270744-56270763 | None:intergenic | 40.0% | |
TGTCTGTTTGGATCCAAATG+TGG | - | chr1.3:56271710-56271729 | MS.gene52532:CDS | 40.0% | |
TGTTTGGATCCAAATGTGGA+AGG | - | chr1.3:56271714-56271733 | MS.gene52532:CDS | 40.0% | |
TTCTTGAAGGAATCGAAGTC+AGG | - | chr1.3:56271898-56271917 | MS.gene52532:CDS | 40.0% | |
TTGAAATGCGCACATGTCTA+CGG | - | chr1.3:56271023-56271042 | MS.gene52532:intron | 40.0% | |
! | ACTCAGACGTTCATTTGTTG+AGG | - | chr1.3:56271225-56271244 | MS.gene52532:intron | 40.0% |
! | ATGAAGACTGATGACGTTCA+TGG | - | chr1.3:56270715-56270734 | MS.gene52532:intron | 40.0% |
! | TAGATCTCTCGCCATTGATT+GGG | - | chr1.3:56269729-56269748 | MS.gene52532:intron | 40.0% |
!! | ATGAAGGATCTTGGTGTTCA+AGG | + | chr1.3:56270362-56270381 | None:intergenic | 40.0% |
AAGTGATGTGCTATCGATGG+TGG | + | chr1.3:56270276-56270295 | None:intergenic | 45.0% | |
AATCTCCGACAACAAGGAAG+GGG | - | chr1.3:56269554-56269573 | MS.gene52532:CDS | 45.0% | |
AGCTGCATACTGAGTGTTTC+GGG | + | chr1.3:56271589-56271608 | None:intergenic | 45.0% | |
AGGTCTGACAGTAGATTGCT+TGG | + | chr1.3:56271204-56271223 | None:intergenic | 45.0% | |
ATCGGGGAGTTCTTCAATTC+AGG | - | chr1.3:56271807-56271826 | MS.gene52532:CDS | 45.0% | |
CAGAAGTGATGTGCTATCGA+TGG | + | chr1.3:56270279-56270298 | None:intergenic | 45.0% | |
CTAGATCTCTCGCCATTGAT+TGG | - | chr1.3:56269728-56269747 | MS.gene52532:intron | 45.0% | |
GACAGAGTTTGAGGAATTGC+CGG | - | chr1.3:56269273-56269292 | MS.gene52532:CDS | 45.0% | |
GATAACACCACGGGATAGTT+TGG | + | chr1.3:56271654-56271673 | None:intergenic | 45.0% | |
GGGTGGTTGGAGATTGAAAT+CGG | - | chr1.3:56271789-56271808 | MS.gene52532:CDS | 45.0% | |
GGTGGTTGGAGATTGAAATC+GGG | - | chr1.3:56271790-56271809 | MS.gene52532:CDS | 45.0% | |
GTAATCTCCGACAACAAGGA+AGG | - | chr1.3:56269552-56269571 | MS.gene52532:CDS | 45.0% | |
GTGGTTGGAGATTGAAATCG+GGG | - | chr1.3:56271791-56271810 | MS.gene52532:CDS | 45.0% | |
TCAGAATCCAAACTATCCCG+TGG | - | chr1.3:56271644-56271663 | MS.gene52532:intron | 45.0% | |
TCATCAACAAGGACAGCAGA+TGG | - | chr1.3:56270677-56270696 | MS.gene52532:intron | 45.0% | |
TGCTGAGTCCTTCATCAACA+AGG | - | chr1.3:56270666-56270685 | MS.gene52532:intron | 45.0% | |
TGGATCCAAATGTGGAAGGT+GGG | - | chr1.3:56271718-56271737 | MS.gene52532:CDS | 45.0% | |
TTGGATCCAAATGTGGAAGG+TGG | - | chr1.3:56271717-56271736 | MS.gene52532:CDS | 45.0% | |
! | AGATCTCTCGCCATTGATTG+GGG | - | chr1.3:56269730-56269749 | MS.gene52532:intron | 45.0% |
! | ATGGCGGAAATGTAACCTTC+CGG | + | chr1.3:56269295-56269314 | None:intergenic | 45.0% |
! | GATTGGTTGTCGCGACAATT+AGG | + | chr1.3:56270428-56270447 | None:intergenic | 45.0% |
! | TCTGCTGTCCTTGTTGATGA+AGG | + | chr1.3:56270677-56270696 | None:intergenic | 45.0% |
! | TTTCTCCCCTTCCTTGTTGT+CGG | + | chr1.3:56269562-56269581 | None:intergenic | 45.0% |
!! | AAATGAGTCGGCTTGTGTCT+AGG | - | chr1.3:56270955-56270974 | MS.gene52532:intron | 45.0% |
!! | CTTGGTGTTCAAGGTGAACT+TGG | + | chr1.3:56270353-56270372 | None:intergenic | 45.0% |
!!! | AGCTTTTTTGGTAGGAGCGT+TGG | + | chr1.3:56269470-56269489 | None:intergenic | 45.0% |
!!! | GCTGCTCCTTTTTTAAGCCT+TGG | - | chr1.3:56270527-56270546 | MS.gene52532:intron | 45.0% |
!! | AAATTAAATAAAATTGAAAT+TGG | + | chr1.3:56269973-56269992 | None:intergenic | 5.0% |
AAAGTGATTCCAGACGGCGT+CGG | + | chr1.3:56269392-56269411 | None:intergenic | 50.0% | |
ACAAGAAGCTCAGCGACTTC+AGG | + | chr1.3:56271519-56271538 | None:intergenic | 50.0% | |
ACAGCGCAGTAGGATTGCAA+CGG | - | chr1.3:56271748-56271767 | MS.gene52532:CDS | 50.0% | |
AGGACAGCAGATGGTCTTTG+AGG | - | chr1.3:56270686-56270705 | MS.gene52532:intron | 50.0% | |
AGTTGTGCGAGAGAGAATGG+CGG | + | chr1.3:56269311-56269330 | None:intergenic | 50.0% | |
CAAGAAGCTCAGCGACTTCA+GGG | + | chr1.3:56271518-56271537 | None:intergenic | 50.0% | |
CATTCTCTCTCGCACAACTC+CGG | - | chr1.3:56269312-56269331 | MS.gene52532:CDS | 50.0% | |
GACCAATGCAGTAGCTGACT+AGG | - | chr1.3:56271088-56271107 | MS.gene52532:intron | 50.0% | |
GAGTTTGAGGAATTGCCGGA+AGG | - | chr1.3:56269277-56269296 | MS.gene52532:CDS | 50.0% | |
GGGGTGATGATAGACGCTAT+TGG | - | chr1.3:56269749-56269768 | MS.gene52532:intron | 50.0% | |
GGTAAGATGCAGTGCATCTG+CGG | + | chr1.3:56271141-56271160 | None:intergenic | 50.0% | |
GTAAGATGCAGTGCATCTGC+GGG | + | chr1.3:56271140-56271159 | None:intergenic | 50.0% | |
GTATCTGTCCTTAGCAGCTG+TGG | - | chr1.3:56271252-56271271 | MS.gene52532:intron | 50.0% | |
TGTTGCCCACCTTCCACATT+TGG | + | chr1.3:56271726-56271745 | None:intergenic | 50.0% | |
TTAGCCACCACTAAACGCCA+CGG | + | chr1.3:56270215-56270234 | None:intergenic | 50.0% | |
TTCACTAGCCACAGCTGCTA+AGG | + | chr1.3:56271263-56271282 | None:intergenic | 50.0% | |
! | AAATCGAGGGCATAGCTACG+TGG | + | chr1.3:56270069-56270088 | None:intergenic | 50.0% |
!! | GATGTGCTATCGATGGTGGA+TGG | + | chr1.3:56270272-56270291 | None:intergenic | 50.0% |
!! | GCATTGGTCTTCAGCTGCAA+GGG | + | chr1.3:56271077-56271096 | None:intergenic | 50.0% |
!! | TGCATTGGTCTTCAGCTGCA+AGG | + | chr1.3:56271078-56271097 | None:intergenic | 50.0% |
CACCCATCGCTTCTCACACT+AGG | + | chr1.3:56271774-56271793 | None:intergenic | 55.0% | |
CGGAGTTGTGCGAGAGAGAA+TGG | + | chr1.3:56269314-56269333 | None:intergenic | 55.0% | |
CGTTCAGTCAAACCGGTGCT+CGG | - | chr1.3:56270108-56270127 | MS.gene52532:intron | 55.0% | |
CTAGTGTGAGAAGCGATGGG+TGG | - | chr1.3:56271772-56271791 | MS.gene52532:CDS | 55.0% | |
GGAAACAACGGAGAGTCTGC+CGG | + | chr1.3:56269344-56269363 | None:intergenic | 55.0% | |
GGCCTAGTCAGCTACTGCAT+TGG | + | chr1.3:56271093-56271112 | None:intergenic | 55.0% | |
GGCCTAGTGTGAGAAGCGAT+GGG | - | chr1.3:56271769-56271788 | MS.gene52532:CDS | 55.0% | |
GGCGGCAGAAAGGAAAGTCT+TGG | + | chr1.3:56269365-56269384 | None:intergenic | 55.0% | |
GGGCAACATAACAGCGCAGT+AGG | - | chr1.3:56271738-56271757 | MS.gene52532:CDS | 55.0% | |
GGTCTTCAGCTGCAAGGGTA+AGG | + | chr1.3:56271072-56271091 | None:intergenic | 55.0% | |
GTGTCCAGTGTCTACGCAAG+TGG | + | chr1.3:56271114-56271133 | None:intergenic | 55.0% | |
TAGGCCACTTGCGTAGACAC+TGG | - | chr1.3:56271107-56271126 | MS.gene52532:intron | 55.0% | |
TGTGAGAAGCGATGGGTGGT+TGG | - | chr1.3:56271776-56271795 | MS.gene52532:CDS | 55.0% | |
! | ATTCCAGACGGCGTCGGAAT+CGG | + | chr1.3:56269386-56269405 | None:intergenic | 55.0% |
!! | GTAGGAGCGTTGGCAAGTGA+AGG | + | chr1.3:56269460-56269479 | None:intergenic | 55.0% |
CGGCCTAGTGTGAGAAGCGA+TGG | - | chr1.3:56271768-56271787 | MS.gene52532:CDS | 60.0% | |
! | TATTGGCTATGGTGGCGCCG+TGG | - | chr1.3:56270195-56270214 | MS.gene52532:intron | 60.0% |
!! | CGATGGTGGATGGCAGACCA+CGG | + | chr1.3:56270262-56270281 | None:intergenic | 60.0% |
CGTCGGAATCGGCGGCAGAA+AGG | + | chr1.3:56269375-56269394 | None:intergenic | 65.0% | |
CGCACAACTCCGGCTGACGC+CGG | - | chr1.3:56269322-56269341 | MS.gene52532:CDS | 70.0% | |
GAGAGTCTGCCGGCGTCAGC+CGG | + | chr1.3:56269334-56269353 | None:intergenic | 70.0% | |
GGCGCCGTGGCGTTTAGTGG+TGG | - | chr1.3:56270208-56270227 | MS.gene52532:intron | 70.0% | |
GGTGGCGCCGTGGCGTTTAG+TGG | - | chr1.3:56270205-56270224 | MS.gene52532:intron | 70.0% | |
! | CCAGACGGCGTCGGAATCGG+CGG | + | chr1.3:56269383-56269402 | None:intergenic | 70.0% |
!! | CCGCCGATTCCGACGCCGTC+TGG | - | chr1.3:56269380-56269399 | MS.gene52532:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 56269271 | 56271929 | 56269271 | ID=MS.gene52532 |
chr1.3 | mRNA | 56269271 | 56271929 | 56269271 | ID=MS.gene52532.t1;Parent=MS.gene52532 |
chr1.3 | exon | 56271660 | 56271929 | 56271660 | ID=MS.gene52532.t1.exon1;Parent=MS.gene52532.t1 |
chr1.3 | CDS | 56271660 | 56271929 | 56271660 | ID=cds.MS.gene52532.t1;Parent=MS.gene52532.t1 |
chr1.3 | exon | 56271403 | 56271521 | 56271403 | ID=MS.gene52532.t1.exon2;Parent=MS.gene52532.t1 |
chr1.3 | CDS | 56271403 | 56271521 | 56271403 | ID=cds.MS.gene52532.t1;Parent=MS.gene52532.t1 |
chr1.3 | exon | 56269271 | 56269688 | 56269271 | ID=MS.gene52532.t1.exon3;Parent=MS.gene52532.t1 |
chr1.3 | CDS | 56269271 | 56269688 | 56269271 | ID=cds.MS.gene52532.t1;Parent=MS.gene52532.t1 |
Gene Sequence |
Protein sequence |