AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52532


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52532.t1 MTR_1g079200 87.313 268 30 1 1 268 1 264 1.59e-171 474
MS.gene52532.t1 MTR_1g079180 84.444 270 35 4 1 268 1 265 2.16e-161 448
MS.gene52532.t1 MTR_1g079370 75.556 270 59 3 1 268 1 265 7.10e-146 409
MS.gene52532.t1 MTR_1g100597 71.942 278 62 4 1 268 1 272 8.19e-136 384
MS.gene52532.t1 MTR_1g079460 70.522 268 77 1 1 268 1 266 4.78e-133 377
MS.gene52532.t1 MTR_1g079380 72.593 270 67 3 1 268 1 265 8.96e-128 365
MS.gene52532.t1 MTR_1g079850 66.431 283 78 3 1 268 1 281 5.26e-125 357
MS.gene52532.t1 MTR_1g079260 66.787 277 78 4 1 268 1 272 8.56e-125 356
MS.gene52532.t1 MTR_1g079250 68.345 278 78 3 1 268 1 278 1.32e-120 347
MS.gene52532.t1 MTR_1g079230 63.309 278 87 4 1 268 1 273 5.30e-117 337
MS.gene52532.t1 MTR_1g100613 69.421 242 56 3 20 248 5 241 8.32e-113 325
MS.gene52532.t1 MTR_1g026510 61.837 283 93 4 1 268 1 283 4.74e-112 325
MS.gene52532.t1 MTR_3g006850 59.801 301 83 4 4 268 17 315 7.29e-111 322
MS.gene52532.t1 MTR_3g452600 60.377 265 98 2 4 268 10 267 7.75e-104 303
MS.gene52532.t1 MTR_1g079350 60.650 277 98 6 1 268 1 275 1.72e-99 292
MS.gene52532.t1 MTR_3g450990 55.124 283 100 4 4 268 10 283 1.90e-92 275
MS.gene52532.t1 MTR_2g079100 56.767 266 98 4 4 265 9 261 3.38e-92 273
MS.gene52532.t1 MTR_1g079340 54.639 291 104 8 1 268 40 325 1.08e-88 266
MS.gene52532.t1 MTR_1g079410 53.137 271 114 6 5 268 9 273 4.90e-87 260
MS.gene52532.t1 MTR_1g078470 72.254 173 43 3 96 268 17 184 1.37e-84 251
MS.gene52532.t1 MTR_7g096300 57.471 261 94 7 1 255 1 250 5.92e-82 261
MS.gene52532.t1 MTR_1g079140 46.000 300 125 6 2 268 11 306 1.55e-74 230
MS.gene52532.t1 MTR_1g079400 44.948 287 115 6 5 268 13 279 2.85e-70 218
MS.gene52532.t1 MTR_1g079240 62.983 181 56 4 88 268 10 179 2.72e-64 199
MS.gene52532.t1 MTR_7g112550 44.326 282 139 6 2 268 5 283 3.02e-64 202
MS.gene52532.t1 MTR_1g083580 38.849 278 157 6 2 268 6 281 1.88e-55 180
MS.gene52532.t1 MTR_1g079350 66.165 133 43 1 1 131 1 133 9.21e-50 163
MS.gene52532.t1 MTR_7g112560 38.060 268 152 8 4 268 1 257 3.10e-47 158
MS.gene52532.t1 MTR_1g076870 58.824 136 36 2 131 248 2 135 6.09e-46 151
MS.gene52532.t1 MTR_4g023570 36.466 266 139 7 4 268 1 237 7.46e-44 149
MS.gene52532.t1 MTR_2g042540 70.093 107 29 2 1 106 1 105 3.36e-41 139
MS.gene52532.t1 MTR_1g079130 43.005 193 78 5 104 268 1 189 6.86e-38 132
MS.gene52532.t1 MTR_7g096310 58.824 119 41 3 60 176 38 150 1.69e-33 120
MS.gene52532.t1 MTR_1g079210 55.200 125 40 2 132 242 7 129 1.96e-33 119
MS.gene52532.t1 MTR_3g058640 57.843 102 41 1 131 232 7 106 4.46e-32 114
MS.gene52532.t1 MTR_1g078460 68.889 90 25 1 1 90 64 150 2.16e-30 111
MS.gene52532.t1 MTR_7g103380 26.182 275 178 7 6 267 21 283 3.51e-28 109
MS.gene52532.t1 MTR_1g079220 70.588 68 18 1 168 235 1 66 5.91e-24 92.4
MS.gene52532.t1 MTR_0113s0040 28.014 282 163 7 2 268 20 276 1.26e-23 97.4
MS.gene52532.t1 MTR_0002s0020 25.806 279 164 7 6 265 24 278 3.98e-19 85.1
MS.gene52532.t1 MTR_1g101390 27.881 269 178 8 2 267 26 281 4.82e-19 84.7
MS.gene52532.t1 MTR_4g102770 32.877 146 97 1 6 151 21 165 8.76e-18 81.3
MS.gene52532.t1 MTR_5g010800 26.515 264 180 7 6 267 19 270 2.60e-17 80.1
MS.gene52532.t1 MTR_4g083970 25.962 208 130 6 66 268 102 290 2.66e-16 77.4
MS.gene52532.t1 MTR_1g079390 72.000 50 12 2 214 263 8 55 2.70e-15 68.9
MS.gene52532.t1 MTR_1g050352 51.807 83 32 4 26 105 46 123 4.73e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52532.t1 AT1G80110 45.420 262 132 3 7 267 4 255 7.47e-70 216
MS.gene52532.t1 AT2G02360 42.322 267 139 6 4 267 14 268 4.37e-69 214
MS.gene52532.t1 AT2G02240 41.199 267 143 5 4 267 61 316 6.12e-59 190
MS.gene52532.t1 AT2G02340 39.560 273 155 6 1 267 33 301 3.68e-58 187
MS.gene52532.t1 AT2G02250 40.299 268 145 6 4 267 47 303 1.42e-55 181
MS.gene52532.t1 AT1G09155 40.278 288 136 9 7 268 3 280 4.77e-54 177
MS.gene52532.t1 AT2G02230 34.516 310 154 7 2 268 30 333 3.10e-52 173
MS.gene52532.t1 AT1G56250 40.141 284 142 9 7 268 4 281 1.04e-49 165
MS.gene52532.t1 AT2G02310 35.075 268 163 5 4 268 45 304 6.14e-48 161
MS.gene52532.t1 AT1G56240 39.146 281 147 9 7 267 4 280 1.76e-47 159
MS.gene52532.t1 AT2G02350 36.567 268 157 7 4 267 24 282 6.52e-47 158
MS.gene52532.t1 AT2G02320 37.037 270 149 9 6 267 42 298 1.05e-46 158
MS.gene52532.t1 AT2G02300 35.294 272 145 8 4 268 34 281 7.12e-40 140
MS.gene52532.t1 AT5G24560 37.245 196 107 4 4 197 3 184 2.72e-35 125
MS.gene52532.t1 AT3G53000 29.603 277 165 9 6 267 23 284 3.59e-31 117
MS.gene52532.t1 AT2G02350 33.929 168 104 5 104 267 1 165 5.13e-22 90.5
MS.gene52532.t1 AT3G61060 24.242 264 189 5 6 268 27 280 9.28e-18 81.3
MS.gene52532.t1 AT3G61060 23.485 264 192 4 6 268 27 281 3.10e-17 80.1
MS.gene52532.t1 AT5G52120 32.692 156 99 2 1 151 18 172 9.82e-17 78.6
MS.gene52532.t1 AT1G63090 27.547 265 176 9 6 267 28 279 7.14e-16 76.3
MS.gene52532.t1 AT1G12710 24.364 275 172 6 6 267 30 281 8.59e-15 73.2
MS.gene52532.t1 AT4G19850 28.022 182 99 7 97 268 59 218 2.62e-13 67.8
MS.gene52532.t1 AT4G19850 28.962 183 96 8 97 268 17 176 2.97e-13 66.6
MS.gene52532.t1 AT1G65390 27.374 179 107 5 94 268 251 410 1.01e-11 65.1
MS.gene52532.t1 AT4G19840 24.603 252 139 9 47 268 15 245 3.58e-11 62.0

Find 67 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAACTTCTTTATCTTCT+AGG 0.116706 1.3:+56269348 None:intergenic
AGCTGCATACTGAGTGTTTC+GGG 0.254063 1.3:+56269592 None:intergenic
TGTTGCCCACCTTCCACATT+TGG 0.295277 1.3:+56269455 None:intergenic
ATCGGGGAGTTCTTCAATTC+AGG 0.312491 1.3:-56269371 MS.gene52532:CDS
GATAACACCACGGGATAGTT+TGG 0.336653 1.3:+56269527 None:intergenic
TGATCATTGTCGATGATGAT+AGG 0.340168 1.3:+56271664 None:intergenic
CCGCCGATTCCGACGCCGTC+TGG 0.340798 1.3:-56271798 MS.gene52532:CDS
ACAAGAAGCTCAGCGACTTC+AGG 0.347960 1.3:+56269662 None:intergenic
TAGATCTCTCGCCATTGATT+GGG 0.352783 1.3:-56271449 MS.gene52532:CDS
CTTGTGTTCAAGATGATTGA+TGG 0.366427 1.3:-56269566 MS.gene52532:CDS
AGAAGTTCAAATGAATATAA+AGG 0.377032 1.3:-56269336 MS.gene52532:CDS
GACAGAGTTTGAGGAATTGC+CGG 0.379323 1.3:-56271905 MS.gene52532:CDS
GGATTTCTATGCCTAATTCC+AGG 0.380639 1.3:-56271402 MS.gene52532:intron
CTAGATCTCTCGCCATTGAT+TGG 0.391247 1.3:-56271450 MS.gene52532:CDS
TGAAATTCAGAGCTTTCAAT+TGG 0.394466 1.3:-56271509 MS.gene52532:intron
TAGTACTAAAATTGTCTGTT+TGG 0.397688 1.3:-56269480 MS.gene52532:CDS
GGGTGGTTGGAGATTGAAAT+CGG 0.403576 1.3:-56269389 MS.gene52532:CDS
CAAAAGAATGACAGAGTTTG+AGG 0.409289 1.3:-56271914 None:intergenic
AAGCTGCATACTGAGTGTTT+CGG 0.411984 1.3:+56269591 None:intergenic
AAGTGTGGTCTCTTTCTTGA+AGG 0.415452 1.3:-56269293 MS.gene52532:CDS
ATCTAAGCTAACCTGGAATT+AGG 0.417358 1.3:+56271391 None:intergenic
TTCTTGAAGGAATCGAAGTC+AGG 0.419195 1.3:-56269280 MS.gene52532:CDS
ATGATAGACGCTATTGGAAC+TGG 0.420013 1.3:-56271423 MS.gene52532:CDS
ATTCCAGACGGCGTCGGAAT+CGG 0.451722 1.3:+56271795 None:intergenic
CGGAGTTGTGCGAGAGAGAA+TGG 0.455681 1.3:+56271867 None:intergenic
GGTGGTTGGAGATTGAAATC+GGG 0.460102 1.3:-56269388 MS.gene52532:CDS
ATGGCGGAAATGTAACCTTC+CGG 0.467195 1.3:+56271886 None:intergenic
GTTACTTAATTGTCTTACTT+AGG 0.474668 1.3:+56269257 None:intergenic
CAAGAAGCTCAGCGACTTCA+GGG 0.475210 1.3:+56269663 None:intergenic
CGGCCTAGTGTGAGAAGCGA+TGG 0.477390 1.3:-56269410 MS.gene52532:CDS
GAGAGTCTGCCGGCGTCAGC+CGG 0.494209 1.3:+56271847 None:intergenic
GGCGGCAGAAAGGAAAGTCT+TGG 0.517109 1.3:+56271816 None:intergenic
TCTATCATCACCCCAATCAA+TGG 0.521541 1.3:+56271438 None:intergenic
TTCAAGATGATTGATGGCTA+TGG 0.530465 1.3:-56269560 MS.gene52532:CDS
GGGGTGATGATAGACGCTAT+TGG 0.540557 1.3:-56271429 MS.gene52532:CDS
CACCCATCGCTTCTCACACT+AGG 0.546742 1.3:+56269407 None:intergenic
CGTCGGAATCGGCGGCAGAA+AGG 0.549047 1.3:+56271806 None:intergenic
CATTCTCTCTCGCACAACTC+CGG 0.556161 1.3:-56271866 MS.gene52532:CDS
GATCATTGTCGATGATGATA+GGG 0.558501 1.3:+56271665 None:intergenic
TTTCAATTGGATAGAAAGAG+TGG 0.567809 1.3:-56271496 MS.gene52532:CDS
GGGCAACATAACAGCGCAGT+AGG 0.570300 1.3:-56269440 MS.gene52532:CDS
GGAAACAACGGAGAGTCTGC+CGG 0.570524 1.3:+56271837 None:intergenic
GTAGGAGCGTTGGCAAGTGA+AGG 0.572663 1.3:+56271721 None:intergenic
GTGTTATCAATTTGTGTCGA+AGG 0.573911 1.3:-56269512 MS.gene52532:CDS
TGTGAGAAGCGATGGGTGGT+TGG 0.576323 1.3:-56269402 MS.gene52532:CDS
CCAGACGGCGTCGGAATCGG+CGG 0.580387 1.3:+56271798 None:intergenic
CGCACAACTCCGGCTGACGC+CGG 0.587266 1.3:-56271856 MS.gene52532:CDS
AGATCTCTCGCCATTGATTG+GGG 0.587403 1.3:-56271448 MS.gene52532:CDS
CATCATCGACAATGATCAGA+AGG 0.590425 1.3:-56271659 MS.gene52532:intron
ACACAAATTGATAACACCAC+GGG 0.605212 1.3:+56269518 None:intergenic
TTATCAATTTGTGTCGAAGG+TGG 0.608233 1.3:-56269509 MS.gene52532:CDS
GTGGTTGGAGATTGAAATCG+GGG 0.611248 1.3:-56269387 MS.gene52532:CDS
GATGATTATAATTCGAAGTG+TGG 0.621156 1.3:-56269308 MS.gene52532:CDS
TGTCTGTTTGGATCCAAATG+TGG 0.625217 1.3:-56269468 MS.gene52532:CDS
GAGTTTGAGGAATTGCCGGA+AGG 0.635608 1.3:-56271901 MS.gene52532:CDS
GGCCTAGTGTGAGAAGCGAT+GGG 0.643186 1.3:-56269409 MS.gene52532:CDS
TGGATCCAAATGTGGAAGGT+GGG 0.645556 1.3:-56269460 MS.gene52532:CDS
AAAGTGATTCCAGACGGCGT+CGG 0.649267 1.3:+56271789 None:intergenic
AGAAAGAAAGTGATTCCAGA+CGG 0.655957 1.3:+56271783 None:intergenic
ACAGCGCAGTAGGATTGCAA+CGG 0.659500 1.3:-56269430 MS.gene52532:CDS
GACACAAATTGATAACACCA+CGG 0.662112 1.3:+56269517 None:intergenic
TTGGATCCAAATGTGGAAGG+TGG 0.663222 1.3:-56269461 MS.gene52532:CDS
AAGGAAAGTCTTGGAAACAA+CGG 0.668714 1.3:+56271825 None:intergenic
TGTTTGGATCCAAATGTGGA+AGG 0.673961 1.3:-56269464 MS.gene52532:CDS
TCAGAATCCAAACTATCCCG+TGG 0.688070 1.3:-56269534 MS.gene52532:CDS
CTAGTGTGAGAAGCGATGGG+TGG 0.709944 1.3:-56269406 MS.gene52532:CDS
AGTTGTGCGAGAGAGAATGG+CGG 0.737972 1.3:+56271870 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGACATAATAATAATAGTTA+AGG + chr1.3:56271289-56271308 None:intergenic 15.0%
!! TGATACATTGAAAAATAAAT+AGG + chr1.3:56270450-56270469 None:intergenic 15.0%
!!! ACTAAATTTTGTATTCATAA+AGG + chr1.3:56269878-56269897 None:intergenic 15.0%
!!! CTATATTTGAAACTTAATTA+TGG + chr1.3:56270806-56270825 None:intergenic 15.0%
!!! TACATCTCTATTTTTTATTT+GGG + chr1.3:56271431-56271450 None:intergenic 15.0%
!!! TTACATCTCTATTTTTTATT+TGG + chr1.3:56271432-56271451 None:intergenic 15.0%
!! AGAAGTTCAAATGAATATAA+AGG - chr1.3:56271842-56271861 MS.gene52532:CDS 20.0%
!! AGCATATATAACTTATTAAC+TGG - chr1.3:56271320-56271339 MS.gene52532:intron 20.0%
!! AGTAAATTTCAAAGAAAACA+TGG + chr1.3:56271168-56271187 None:intergenic 20.0%
!! AGTTGCAAATATTAGAATAT+AGG + chr1.3:56271483-56271502 None:intergenic 20.0%
!! ATGAATACAAAATTTAGTTG+AGG - chr1.3:56269880-56269899 MS.gene52532:intron 20.0%
!! ATGAGAAATTCAATAATCAA+AGG + chr1.3:56270040-56270059 None:intergenic 20.0%
!! CATTGAAAAATAAATAGGAT+TGG + chr1.3:56270445-56270464 None:intergenic 20.0%
!! GCATATATAACTTATTAACT+GGG - chr1.3:56271321-56271340 MS.gene52532:intron 20.0%
!!! AAATTTTGTATTCATAAAGG+CGG + chr1.3:56269875-56269894 None:intergenic 20.0%
!!! ATTATCAATAGCTTTTTTTC+TGG + chr1.3:56269607-56269626 None:intergenic 20.0%
!!! ATTTGAAACTTAATTATGGA+AGG + chr1.3:56270802-56270821 None:intergenic 20.0%
!!! TTTGAAACTTAATTATGGAA+GGG + chr1.3:56270801-56270820 None:intergenic 20.0%
!!! TTTGAAATTTACTTTTGACT+TGG - chr1.3:56271175-56271194 MS.gene52532:intron 20.0%
! ATATAACTTATTAACTGGGT+AGG - chr1.3:56271325-56271344 MS.gene52532:intron 25.0%
! ATTCTAATATTTGCAACTGT+TGG - chr1.3:56271485-56271504 MS.gene52532:CDS 25.0%
! CAATTAGGATAAAAAACCTA+TGG + chr1.3:56270413-56270432 None:intergenic 25.0%
! TAATAGACTATATCAAGATG+AGG + chr1.3:56270990-56271009 None:intergenic 25.0%
! TAGTACTAAAATTGTCTGTT+TGG - chr1.3:56271698-56271717 MS.gene52532:CDS 25.0%
! TTTCAAAGAAAACATGGTAT+TGG + chr1.3:56271162-56271181 None:intergenic 25.0%
! TTTGAACTTCTTTATCTTCT+AGG + chr1.3:56271833-56271852 None:intergenic 25.0%
!!! AGACAATTTTAGTACTATCA+TGG + chr1.3:56271695-56271714 None:intergenic 25.0%
!!! GAGCAGAGATTTTAAAAATT+TGG + chr1.3:56270478-56270497 None:intergenic 25.0%
!!! TTTTTTGGCTTCATATTAGT+GGG - chr1.3:56271541-56271560 MS.gene52532:intron 25.0%
AACTGCATCATTAAAGATGA+AGG + chr1.3:56270378-56270397 None:intergenic 30.0%
AATATTTGCAACTGTTGGAT+AGG - chr1.3:56271490-56271509 MS.gene52532:CDS 30.0%
AATCTCAACACAACAATCAT+TGG + chr1.3:56269950-56269969 None:intergenic 30.0%
ACAAATATTTGATGTCCCTA+TGG - chr1.3:56270131-56270150 MS.gene52532:intron 30.0%
ACTTAATATCTAAGCTAACC+TGG + chr1.3:56269797-56269816 None:intergenic 30.0%
AGGGGAGAAAATATGAAATT+TGG - chr1.3:56269572-56269591 MS.gene52532:CDS 30.0%
AGTTATTGCTTCATTTCCAT+AGG - chr1.3:56270394-56270413 MS.gene52532:intron 30.0%
ATGATGTCAACAAAATGAGT+CGG - chr1.3:56270943-56270962 MS.gene52532:intron 30.0%
ATTGATACTAAAATCGAGGA+AGG - chr1.3:56269920-56269939 MS.gene52532:intron 30.0%
CAAAATTTAGTTGAGGCAAA+TGG - chr1.3:56269887-56269906 MS.gene52532:intron 30.0%
CAACTTGAATGTAATAAGCA+TGG + chr1.3:56270753-56270772 None:intergenic 30.0%
GATGATTATAATTCGAAGTG+TGG - chr1.3:56271870-56271889 MS.gene52532:CDS 30.0%
TCATTAAAGATGAAGGATCT+TGG + chr1.3:56270371-56270390 None:intergenic 30.0%
TGAAATTCAGAGCTTTCAAT+TGG - chr1.3:56269669-56269688 MS.gene52532:CDS 30.0%
TTCAGATTTCTAATAAGCCT+TGG - chr1.3:56269640-56269659 MS.gene52532:CDS 30.0%
TTTCAATTGGATAGAAAGAG+TGG - chr1.3:56269682-56269701 MS.gene52532:intron 30.0%
! AAATTTGGGTTTGAAATCGA+GGG + chr1.3:56270082-56270101 None:intergenic 30.0%
! ACTGAACGTGCTTTAAATTT+GGG + chr1.3:56270096-56270115 None:intergenic 30.0%
! AGAAACACATTTTAAGCCAT+AGG + chr1.3:56270150-56270169 None:intergenic 30.0%
! CAAGTTGAACACTATTATAC+TGG - chr1.3:56270896-56270915 MS.gene52532:intron 30.0%
! GAAACACATTTTAAGCCATA+GGG + chr1.3:56270149-56270168 None:intergenic 30.0%
! TAAATTTGGGTTTGAAATCG+AGG + chr1.3:56270083-56270102 None:intergenic 30.0%
! TTACAATTCTCCTCATTTTC+TGG - chr1.3:56270012-56270031 MS.gene52532:intron 30.0%
!!! GTTTTTTGGCTTCATATTAG+TGG - chr1.3:56271540-56271559 MS.gene52532:intron 30.0%
AACAATGTGTAGCAATACCA+AGG + chr1.3:56270547-56270566 None:intergenic 35.0%
AAGGAAAGTCTTGGAAACAA+CGG + chr1.3:56269356-56269375 None:intergenic 35.0%
AGAAAGAAAGTGATTCCAGA+CGG + chr1.3:56269398-56269417 None:intergenic 35.0%
AGATAGATGAGTGAATAGCA+TGG + chr1.3:56270323-56270342 None:intergenic 35.0%
ATATCAAGATGAGGACTACA+AGG + chr1.3:56270981-56271000 None:intergenic 35.0%
ATCAAAGGAACCAGAAAATG+AGG + chr1.3:56270025-56270044 None:intergenic 35.0%
ATCTAAGCTAACCTGGAATT+AGG + chr1.3:56269790-56269809 None:intergenic 35.0%
ATGGAAGGGATGTCAAAAAA+TGG + chr1.3:56270787-56270806 None:intergenic 35.0%
CTTCCAGTGTTGTCAAATAT+TGG - chr1.3:56270178-56270197 MS.gene52532:intron 35.0%
CTTGTGTTCAAGATGATTGA+TGG - chr1.3:56271612-56271631 MS.gene52532:intron 35.0%
GATCATTGTCGATGATGATA+GGG + chr1.3:56269516-56269535 None:intergenic 35.0%
GCAATACCAAGGCTTAAAAA+AGG + chr1.3:56270536-56270555 None:intergenic 35.0%
GGCTATTGATACTAAAATCG+AGG - chr1.3:56269916-56269935 MS.gene52532:intron 35.0%
GTGTTATCAATTTGTGTCGA+AGG - chr1.3:56271666-56271685 MS.gene52532:CDS 35.0%
TAGCCAATATTTGACAACAC+TGG + chr1.3:56270184-56270203 None:intergenic 35.0%
TCTGAATTTCAACACATCCA+AGG + chr1.3:56269660-56269679 None:intergenic 35.0%
TGATCATTGTCGATGATGAT+AGG + chr1.3:56269517-56269536 None:intergenic 35.0%
TGGAAGGGATGTCAAAAAAT+GGG + chr1.3:56270786-56270805 None:intergenic 35.0%
TTATCAATTTGTGTCGAAGG+TGG - chr1.3:56271669-56271688 MS.gene52532:CDS 35.0%
! ACACAAATTGATAACACCAC+GGG + chr1.3:56271663-56271682 None:intergenic 35.0%
! GACACAAATTGATAACACCA+CGG + chr1.3:56271664-56271683 None:intergenic 35.0%
! GACTGAACGTGCTTTAAATT+TGG + chr1.3:56270097-56270116 None:intergenic 35.0%
! GTGTTGTCAAATATTGGCTA+TGG - chr1.3:56270184-56270203 MS.gene52532:intron 35.0%
! TTCAAGATGATTGATGGCTA+TGG - chr1.3:56271618-56271637 MS.gene52532:intron 35.0%
! TTGTCAAATATTGGCTATGG+TGG - chr1.3:56270187-56270206 MS.gene52532:intron 35.0%
!!! AGATACAGAGCTTTTTTGGT+AGG + chr1.3:56269478-56269497 None:intergenic 35.0%
!!! AGCAAGATACAGAGCTTTTT+TGG + chr1.3:56269482-56269501 None:intergenic 35.0%
!!! ATACTTTTTTCTTTGTGCCG+TGG - chr1.3:56270242-56270261 MS.gene52532:intron 35.0%
!!! CTGAGCTTCTTGTTGTTTTT+TGG - chr1.3:56271526-56271545 MS.gene52532:intron 35.0%
AAATTGTTTGGGCTAAGGGT+TGG - chr1.3:56271350-56271369 MS.gene52532:intron 40.0%
AACAAATGAACGTCTGAGTG+AGG + chr1.3:56271224-56271243 None:intergenic 40.0%
AAGCTGCATACTGAGTGTTT+CGG + chr1.3:56271590-56271609 None:intergenic 40.0%
AAGTGTGGTCTCTTTCTTGA+AGG - chr1.3:56271885-56271904 MS.gene52532:CDS 40.0%
ACTGGGTAGGTCAAATTGTT+TGG - chr1.3:56271338-56271357 MS.gene52532:intron 40.0%
AGGTCAAATTGTTTGGGCTA+AGG - chr1.3:56271345-56271364 MS.gene52532:intron 40.0%
AGTTGAGGCAAATGGATAAG+TGG - chr1.3:56269895-56269914 MS.gene52532:intron 40.0%
ATGATAGACGCTATTGGAAC+TGG - chr1.3:56269755-56269774 MS.gene52532:intron 40.0%
CATCATCGACAATGATCAGA+AGG - chr1.3:56269519-56269538 MS.gene52532:CDS 40.0%
CTGGGTAGGTCAAATTGTTT+GGG - chr1.3:56271339-56271358 MS.gene52532:intron 40.0%
GGAAGGGATGTCAAAAAATG+GGG + chr1.3:56270785-56270804 None:intergenic 40.0%
GGATTTCTATGCCTAATTCC+AGG - chr1.3:56269776-56269795 MS.gene52532:intron 40.0%
GGTCAAATTGTTTGGGCTAA+GGG - chr1.3:56271346-56271365 MS.gene52532:intron 40.0%
TAAAGCACGTTCAGTCAAAC+CGG - chr1.3:56270101-56270120 MS.gene52532:intron 40.0%
TAATCTCCGACAACAAGGAA+GGG - chr1.3:56269553-56269572 MS.gene52532:CDS 40.0%
TCAAATATTTGTCCGAGCAC+CGG + chr1.3:56270123-56270142 None:intergenic 40.0%
TCTATCATCACCCCAATCAA+TGG + chr1.3:56269743-56269762 None:intergenic 40.0%
TCTTGTAATCTCCGACAACA+AGG - chr1.3:56269548-56269567 MS.gene52532:CDS 40.0%
TGTAATAAGCATGGCAGACA+AGG + chr1.3:56270744-56270763 None:intergenic 40.0%
TGTCTGTTTGGATCCAAATG+TGG - chr1.3:56271710-56271729 MS.gene52532:CDS 40.0%
TGTTTGGATCCAAATGTGGA+AGG - chr1.3:56271714-56271733 MS.gene52532:CDS 40.0%
TTCTTGAAGGAATCGAAGTC+AGG - chr1.3:56271898-56271917 MS.gene52532:CDS 40.0%
TTGAAATGCGCACATGTCTA+CGG - chr1.3:56271023-56271042 MS.gene52532:intron 40.0%
! ACTCAGACGTTCATTTGTTG+AGG - chr1.3:56271225-56271244 MS.gene52532:intron 40.0%
! ATGAAGACTGATGACGTTCA+TGG - chr1.3:56270715-56270734 MS.gene52532:intron 40.0%
! TAGATCTCTCGCCATTGATT+GGG - chr1.3:56269729-56269748 MS.gene52532:intron 40.0%
!! ATGAAGGATCTTGGTGTTCA+AGG + chr1.3:56270362-56270381 None:intergenic 40.0%
AAGTGATGTGCTATCGATGG+TGG + chr1.3:56270276-56270295 None:intergenic 45.0%
AATCTCCGACAACAAGGAAG+GGG - chr1.3:56269554-56269573 MS.gene52532:CDS 45.0%
AGCTGCATACTGAGTGTTTC+GGG + chr1.3:56271589-56271608 None:intergenic 45.0%
AGGTCTGACAGTAGATTGCT+TGG + chr1.3:56271204-56271223 None:intergenic 45.0%
ATCGGGGAGTTCTTCAATTC+AGG - chr1.3:56271807-56271826 MS.gene52532:CDS 45.0%
CAGAAGTGATGTGCTATCGA+TGG + chr1.3:56270279-56270298 None:intergenic 45.0%
CTAGATCTCTCGCCATTGAT+TGG - chr1.3:56269728-56269747 MS.gene52532:intron 45.0%
GACAGAGTTTGAGGAATTGC+CGG - chr1.3:56269273-56269292 MS.gene52532:CDS 45.0%
GATAACACCACGGGATAGTT+TGG + chr1.3:56271654-56271673 None:intergenic 45.0%
GGGTGGTTGGAGATTGAAAT+CGG - chr1.3:56271789-56271808 MS.gene52532:CDS 45.0%
GGTGGTTGGAGATTGAAATC+GGG - chr1.3:56271790-56271809 MS.gene52532:CDS 45.0%
GTAATCTCCGACAACAAGGA+AGG - chr1.3:56269552-56269571 MS.gene52532:CDS 45.0%
GTGGTTGGAGATTGAAATCG+GGG - chr1.3:56271791-56271810 MS.gene52532:CDS 45.0%
TCAGAATCCAAACTATCCCG+TGG - chr1.3:56271644-56271663 MS.gene52532:intron 45.0%
TCATCAACAAGGACAGCAGA+TGG - chr1.3:56270677-56270696 MS.gene52532:intron 45.0%
TGCTGAGTCCTTCATCAACA+AGG - chr1.3:56270666-56270685 MS.gene52532:intron 45.0%
TGGATCCAAATGTGGAAGGT+GGG - chr1.3:56271718-56271737 MS.gene52532:CDS 45.0%
TTGGATCCAAATGTGGAAGG+TGG - chr1.3:56271717-56271736 MS.gene52532:CDS 45.0%
! AGATCTCTCGCCATTGATTG+GGG - chr1.3:56269730-56269749 MS.gene52532:intron 45.0%
! ATGGCGGAAATGTAACCTTC+CGG + chr1.3:56269295-56269314 None:intergenic 45.0%
! GATTGGTTGTCGCGACAATT+AGG + chr1.3:56270428-56270447 None:intergenic 45.0%
! TCTGCTGTCCTTGTTGATGA+AGG + chr1.3:56270677-56270696 None:intergenic 45.0%
! TTTCTCCCCTTCCTTGTTGT+CGG + chr1.3:56269562-56269581 None:intergenic 45.0%
!! AAATGAGTCGGCTTGTGTCT+AGG - chr1.3:56270955-56270974 MS.gene52532:intron 45.0%
!! CTTGGTGTTCAAGGTGAACT+TGG + chr1.3:56270353-56270372 None:intergenic 45.0%
!!! AGCTTTTTTGGTAGGAGCGT+TGG + chr1.3:56269470-56269489 None:intergenic 45.0%
!!! GCTGCTCCTTTTTTAAGCCT+TGG - chr1.3:56270527-56270546 MS.gene52532:intron 45.0%
!! AAATTAAATAAAATTGAAAT+TGG + chr1.3:56269973-56269992 None:intergenic 5.0%
AAAGTGATTCCAGACGGCGT+CGG + chr1.3:56269392-56269411 None:intergenic 50.0%
ACAAGAAGCTCAGCGACTTC+AGG + chr1.3:56271519-56271538 None:intergenic 50.0%
ACAGCGCAGTAGGATTGCAA+CGG - chr1.3:56271748-56271767 MS.gene52532:CDS 50.0%
AGGACAGCAGATGGTCTTTG+AGG - chr1.3:56270686-56270705 MS.gene52532:intron 50.0%
AGTTGTGCGAGAGAGAATGG+CGG + chr1.3:56269311-56269330 None:intergenic 50.0%
CAAGAAGCTCAGCGACTTCA+GGG + chr1.3:56271518-56271537 None:intergenic 50.0%
CATTCTCTCTCGCACAACTC+CGG - chr1.3:56269312-56269331 MS.gene52532:CDS 50.0%
GACCAATGCAGTAGCTGACT+AGG - chr1.3:56271088-56271107 MS.gene52532:intron 50.0%
GAGTTTGAGGAATTGCCGGA+AGG - chr1.3:56269277-56269296 MS.gene52532:CDS 50.0%
GGGGTGATGATAGACGCTAT+TGG - chr1.3:56269749-56269768 MS.gene52532:intron 50.0%
GGTAAGATGCAGTGCATCTG+CGG + chr1.3:56271141-56271160 None:intergenic 50.0%
GTAAGATGCAGTGCATCTGC+GGG + chr1.3:56271140-56271159 None:intergenic 50.0%
GTATCTGTCCTTAGCAGCTG+TGG - chr1.3:56271252-56271271 MS.gene52532:intron 50.0%
TGTTGCCCACCTTCCACATT+TGG + chr1.3:56271726-56271745 None:intergenic 50.0%
TTAGCCACCACTAAACGCCA+CGG + chr1.3:56270215-56270234 None:intergenic 50.0%
TTCACTAGCCACAGCTGCTA+AGG + chr1.3:56271263-56271282 None:intergenic 50.0%
! AAATCGAGGGCATAGCTACG+TGG + chr1.3:56270069-56270088 None:intergenic 50.0%
!! GATGTGCTATCGATGGTGGA+TGG + chr1.3:56270272-56270291 None:intergenic 50.0%
!! GCATTGGTCTTCAGCTGCAA+GGG + chr1.3:56271077-56271096 None:intergenic 50.0%
!! TGCATTGGTCTTCAGCTGCA+AGG + chr1.3:56271078-56271097 None:intergenic 50.0%
CACCCATCGCTTCTCACACT+AGG + chr1.3:56271774-56271793 None:intergenic 55.0%
CGGAGTTGTGCGAGAGAGAA+TGG + chr1.3:56269314-56269333 None:intergenic 55.0%
CGTTCAGTCAAACCGGTGCT+CGG - chr1.3:56270108-56270127 MS.gene52532:intron 55.0%
CTAGTGTGAGAAGCGATGGG+TGG - chr1.3:56271772-56271791 MS.gene52532:CDS 55.0%
GGAAACAACGGAGAGTCTGC+CGG + chr1.3:56269344-56269363 None:intergenic 55.0%
GGCCTAGTCAGCTACTGCAT+TGG + chr1.3:56271093-56271112 None:intergenic 55.0%
GGCCTAGTGTGAGAAGCGAT+GGG - chr1.3:56271769-56271788 MS.gene52532:CDS 55.0%
GGCGGCAGAAAGGAAAGTCT+TGG + chr1.3:56269365-56269384 None:intergenic 55.0%
GGGCAACATAACAGCGCAGT+AGG - chr1.3:56271738-56271757 MS.gene52532:CDS 55.0%
GGTCTTCAGCTGCAAGGGTA+AGG + chr1.3:56271072-56271091 None:intergenic 55.0%
GTGTCCAGTGTCTACGCAAG+TGG + chr1.3:56271114-56271133 None:intergenic 55.0%
TAGGCCACTTGCGTAGACAC+TGG - chr1.3:56271107-56271126 MS.gene52532:intron 55.0%
TGTGAGAAGCGATGGGTGGT+TGG - chr1.3:56271776-56271795 MS.gene52532:CDS 55.0%
! ATTCCAGACGGCGTCGGAAT+CGG + chr1.3:56269386-56269405 None:intergenic 55.0%
!! GTAGGAGCGTTGGCAAGTGA+AGG + chr1.3:56269460-56269479 None:intergenic 55.0%
CGGCCTAGTGTGAGAAGCGA+TGG - chr1.3:56271768-56271787 MS.gene52532:CDS 60.0%
! TATTGGCTATGGTGGCGCCG+TGG - chr1.3:56270195-56270214 MS.gene52532:intron 60.0%
!! CGATGGTGGATGGCAGACCA+CGG + chr1.3:56270262-56270281 None:intergenic 60.0%
CGTCGGAATCGGCGGCAGAA+AGG + chr1.3:56269375-56269394 None:intergenic 65.0%
CGCACAACTCCGGCTGACGC+CGG - chr1.3:56269322-56269341 MS.gene52532:CDS 70.0%
GAGAGTCTGCCGGCGTCAGC+CGG + chr1.3:56269334-56269353 None:intergenic 70.0%
GGCGCCGTGGCGTTTAGTGG+TGG - chr1.3:56270208-56270227 MS.gene52532:intron 70.0%
GGTGGCGCCGTGGCGTTTAG+TGG - chr1.3:56270205-56270224 MS.gene52532:intron 70.0%
! CCAGACGGCGTCGGAATCGG+CGG + chr1.3:56269383-56269402 None:intergenic 70.0%
!! CCGCCGATTCCGACGCCGTC+TGG - chr1.3:56269380-56269399 MS.gene52532:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 56269271 56271929 56269271 ID=MS.gene52532
chr1.3 mRNA 56269271 56271929 56269271 ID=MS.gene52532.t1;Parent=MS.gene52532
chr1.3 exon 56271660 56271929 56271660 ID=MS.gene52532.t1.exon1;Parent=MS.gene52532.t1
chr1.3 CDS 56271660 56271929 56271660 ID=cds.MS.gene52532.t1;Parent=MS.gene52532.t1
chr1.3 exon 56271403 56271521 56271403 ID=MS.gene52532.t1.exon2;Parent=MS.gene52532.t1
chr1.3 CDS 56271403 56271521 56271403 ID=cds.MS.gene52532.t1;Parent=MS.gene52532.t1
chr1.3 exon 56269271 56269688 56269271 ID=MS.gene52532.t1.exon3;Parent=MS.gene52532.t1
chr1.3 CDS 56269271 56269688 56269271 ID=cds.MS.gene52532.t1;Parent=MS.gene52532.t1
Gene Sequence

>MS.gene52532

ATGACAGAGTTTGAGGAATTGCCGGAAGGTTACATTTCCGCCATTCTCTCTCGCACAACTCCGGCTGACGCCGGCAGACTCTCCGTTGTTTCCAAGACTTTCCTTTCTGCCGCCGATTCCGACGCCGTCTGGAATCACTTTCTTTCTTCTGATTCTCATTTCATCGACTCTATCATCTCACACTCTCCTTCACTTGCCAACGCTCCTACCAAAAAAGCTCTGTATCTTGCTCTCTCTGATCGCCCTATCATCATCGACAATGATCAGAAGGTATTCTTCTTGTAATCTCCGACAACAAGGAAGGGGAGAAAATATGAAATTTGGATTTATTTTCCAGAAAAAAAGCTATTGATAATTTAAGATGTTTAGTTCAGATTTCTAATAAGCCTTGGATGTGTTGAAATTCAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAAATGTTACATGCTTTCATCTAGATCTCTCGCCATTGATTGGGGTGATGATAGACGCTATTGGAACTGGATTTCTATGCCTAATTCCAGGTTAGCTTAGATATTAAGTTTTCTATTTTTTCTCATGTGTTAATAATATTTTCATTAACAGTTATATTACTACGCCGCCTTTATGAATACAAAATTTAGTTGAGGCAAATGGATAAGTGGCTATTGATACTAAAATCGAGGAAGGATTTCCAATGATTGTTGTGTTGAGATTCCAATTTCAATTTTATTTAATTTGTGCTTCTCTGTTTCTCTCTTACAATTCTCCTCATTTTCTGGTTCCTTTGATTATTGAATTTCTCATGTTACTCCACGTAGCTATGCCCTCGATTTCAAACCCAAATTTAAAGCACGTTCAGTCAAACCGGTGCTCGGACAAATATTTGATGTCCCTATGGCTTAAAATGTGTTTCTCAATATCACTTCCAGTGTTGTCAAATATTGGCTATGGTGGCGCCGTGGCGTTTAGTGGTGGCTAAAAAGTGTATACTTTTTTCTTTGTGCCGTGGTCTGCCATCCACCATCGATAGCACATCACTTCTGCTAAGTATCAGCAGCACGTATCCATGCTATTCACTCATCTATCTCTTTCATCCAAGTTCACCTTGAACACCAAGATCCTTCATCTTTAATGATGCAGTTATTGCTTCATTTCCATAGGTTTTTTATCCTAATTGTCGCGACAACCAATCCTATTTATTTTTCAATGTATCATTTTACCAAATTTTTAAAATCTCTGCTCAATTTGTTTGTTAGTTTACAACAAAAGACGCTGCTCCTTTTTTAAGCCTTGGTATTGCTACACATTGTTCTTGATGAATTGAATTTTCATGAATTGAATATTCAAGTTCAAATTGATTTATATAATAAATTCATTGCTATAAACTTATACTTATTTTGATATTTTATATGCTGAGTCCTTCATCAACAAGGACAGCAGATGGTCTTTGAGGAAGATTATGAAGACTGATGACGTTCATGGTTACCTTGTCTGCCATGCTTATTACATTCAAGTTGTATTGAATTCCCCATTTTTTGACATCCCTTCCATAATTAAGTTTCAAATATAGTGTGACAGTGTACTCATTATTCTCGAGTTGACTATTTGTCTTCAAAATGTTTTTCACTTCTTAATGTATACAAGTTGAACACTATTATACTGGACAATTTCTAGATTTGCATCTGTTATGATGTCAACAAAATGAGTCGGCTTGTGTCTAGGCCTTGTAGTCCTCATCTTGATATAGTCTATTATCTGTTCAGATAATTGAAATGCGCACATGTCTACGGTGTTCTATTTTCTGCAACTTCTTCCTTACCCTTGCAGCTGAAGACCAATGCAGTAGCTGACTAGGCCACTTGCGTAGACACTGGACACACACCCGCAGATGCACTGCATCTTACCAATACCATGTTTTCTTTGAAATTTACTTTTGACTTGGAATCCAAGCAATCTACTGTCAGACCTCACTCAGACGTTCATTTGTTGAGGCTGAGTATCTGTCCTTAGCAGCTGTGGCTAGTGAATTACCTTAACTATTATTATTATGTCTTTTCGTATAACAGCATATATAACTTATTAACTGGGTAGGTCAAATTGTTTGGGCTAAGGGTTGGAAGAGTTAAAGAAGAAAAATGCTAATATACTGACTAATTACTAACATTCGCTTGTCCCAAATAAAAAATAGAGATGTAATGAATCACTTTCAGCTTTTCTCTTAGTTCCTATATTCTAATATTTGCAACTGTTGGATAGGTTCCCTGAAGTCGCTGAGCTTCTTGTTGTTTTTTGGCTTCATATTAGTGGGATGATAAACATGCTTGCATTGTCCCGAAACACTCAGTATGCAGCTTATCTTGTGTTCAAGATGATTGATGGCTATGGATTTCAGAATCCAAACTATCCCGTGGTGTTATCAATTTGTGTCGAAGGTGGCCATGATAGTACTAAAATTGTCTGTTTGGATCCAAATGTGGAAGGTGGGCAACATAACAGCGCAGTAGGATTGCAACGGCCTAGTGTGAGAAGCGATGGGTGGTTGGAGATTGAAATCGGGGAGTTCTTCAATTCAGGCCTAGAAGATAAAGAAGTTCAAATGAATATAAAGGAGATAGATGATTATAATTCGAAGTGTGGTCTCTTTCTTGAAGGAATCGAAGTCAGGCCTAAGTAA

Protein sequence

>MS.gene52532.t1

MTEFEELPEGYISAILSRTTPADAGRLSVVSKTFLSAADSDAVWNHFLSSDSHFIDSIISHSPSLANAPTKKALYLALSDRPIIIDNDQKSFQLDRKSGKKCYMLSSRSLAIDWGDDRRYWNWISMPNSRFPEVAELLVVFWLHISGMINMLALSRNTQYAAYLVFKMIDGYGFQNPNYPVVLSICVEGGHDSTKIVCLDPNVEGGQHNSAVGLQRPSVRSDGWLEIEIGEFFNSGLEDKEVQMNIKEIDDYNSKCGLFLEGIEVRPK