AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07578

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07578.t1 MTR_1g079370 94.717 265 14 0 1 265 1 265 0.0 514
MS.gene07578.t1 MTR_1g079180 80.224 268 47 3 1 265 1 265 6.84e-159 442
MS.gene07578.t1 MTR_1g079380 84.906 265 40 0 1 265 1 265 9.55e-156 435
MS.gene07578.t1 MTR_1g079200 74.157 267 64 3 1 265 1 264 3.84e-140 394
MS.gene07578.t1 MTR_1g100597 71.795 273 68 3 1 265 1 272 2.57e-139 393
MS.gene07578.t1 MTR_1g079260 69.485 272 76 2 1 265 1 272 7.68e-139 392
MS.gene07578.t1 MTR_1g079460 70.149 268 75 2 1 265 1 266 6.85e-135 381
MS.gene07578.t1 MTR_1g079230 65.343 277 80 3 1 265 1 273 4.52e-125 357
MS.gene07578.t1 MTR_1g079850 64.769 281 83 4 1 265 1 281 9.24e-121 346
MS.gene07578.t1 MTR_1g100613 69.388 245 63 2 15 248 1 244 1.57e-118 339
MS.gene07578.t1 MTR_1g079250 63.669 278 88 5 1 265 1 278 4.98e-115 332
MS.gene07578.t1 MTR_1g026510 59.364 283 97 6 1 265 1 283 2.15e-112 325
MS.gene07578.t1 MTR_3g452600 62.214 262 95 2 4 265 10 267 2.28e-110 319
MS.gene07578.t1 MTR_3g006850 58.528 299 87 5 4 265 17 315 7.44e-108 315
MS.gene07578.t1 MTR_2g079100 60.153 261 94 2 4 262 9 261 1.09e-101 297
MS.gene07578.t1 MTR_1g079350 58.696 276 102 6 1 265 1 275 4.95e-99 291
MS.gene07578.t1 MTR_1g079410 55.970 268 110 4 4 265 8 273 1.52e-98 290
MS.gene07578.t1 MTR_3g450990 56.115 278 102 4 4 265 10 283 7.45e-98 288
MS.gene07578.t1 MTR_1g079140 49.324 296 116 5 3 265 12 306 2.79e-92 275
MS.gene07578.t1 MTR_1g078470 73.988 173 40 3 93 265 17 184 1.22e-87 258
MS.gene07578.t1 MTR_1g079340 53.472 288 109 6 1 265 40 325 6.12e-87 262
MS.gene07578.t1 MTR_7g096300 57.769 251 91 5 1 245 1 242 6.49e-85 268
MS.gene07578.t1 MTR_1g079400 48.410 283 110 3 4 265 12 279 6.93e-82 247
MS.gene07578.t1 MTR_7g112550 46.099 282 131 9 2 265 5 283 3.56e-71 220
MS.gene07578.t1 MTR_1g083580 38.849 278 154 5 2 265 6 281 9.60e-66 206
MS.gene07578.t1 MTR_1g079240 61.326 181 59 4 85 265 10 179 8.11e-65 200
MS.gene07578.t1 MTR_7g112560 40.458 262 145 6 7 265 4 257 1.78e-60 192
MS.gene07578.t1 MTR_4g023570 37.023 262 134 6 7 265 4 237 6.33e-52 169
MS.gene07578.t1 MTR_1g076870 61.940 134 35 1 128 245 2 135 2.89e-50 162
MS.gene07578.t1 MTR_1g079130 45.503 189 79 3 101 265 1 189 2.76e-48 159
MS.gene07578.t1 MTR_1g079350 53.293 167 67 4 1 159 1 164 1.03e-47 158
MS.gene07578.t1 MTR_7g096310 52.258 155 56 4 38 185 19 162 4.39e-40 137
MS.gene07578.t1 MTR_1g079210 57.724 123 40 1 129 239 7 129 4.55e-39 133
MS.gene07578.t1 MTR_2g042540 64.762 105 35 2 1 103 1 105 1.56e-37 129
MS.gene07578.t1 MTR_1g078460 73.563 87 23 0 1 87 64 150 4.74e-37 128
MS.gene07578.t1 MTR_3g058640 59.804 102 39 1 128 229 7 106 9.65e-34 118
MS.gene07578.t1 MTR_7g103380 26.812 276 176 6 4 264 19 283 7.90e-29 111
MS.gene07578.t1 MTR_1g079220 77.941 68 13 1 165 232 1 66 2.24e-28 103
MS.gene07578.t1 MTR_4g083970 28.846 208 124 4 63 265 102 290 2.43e-24 99.4
MS.gene07578.t1 MTR_0113s0040 27.660 282 161 6 2 265 20 276 4.39e-23 95.9
MS.gene07578.t1 MTR_1g101390 27.305 282 160 9 2 264 26 281 8.33e-21 89.7
MS.gene07578.t1 MTR_0002s0020 26.568 271 175 7 3 262 21 278 6.62e-20 87.0
MS.gene07578.t1 MTR_4g102770 34.247 146 92 2 4 146 19 163 6.62e-19 84.3
MS.gene07578.t1 MTR_5g010800 26.740 273 173 9 2 264 15 270 1.03e-18 84.0
MS.gene07578.t1 MTR_1g079390 74.000 50 11 2 211 260 8 55 3.67e-17 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07578.t1 AT2G02360 49.425 261 120 5 7 264 17 268 1.65e-86 259
MS.gene07578.t1 AT2G02340 44.815 270 142 4 1 264 33 301 8.75e-75 230
MS.gene07578.t1 AT1G80110 47.710 262 129 5 4 264 1 255 1.08e-73 226
MS.gene07578.t1 AT2G02240 45.385 260 133 5 7 264 64 316 7.70e-73 226
MS.gene07578.t1 AT2G02250 44.697 264 136 6 4 264 47 303 1.07e-70 220
MS.gene07578.t1 AT2G02230 38.411 302 140 7 7 265 35 333 5.79e-67 211
MS.gene07578.t1 AT1G09155 42.294 279 140 7 7 265 3 280 2.89e-66 208
MS.gene07578.t1 AT1G56250 42.652 279 139 7 7 265 4 281 7.30e-61 194
MS.gene07578.t1 AT1G56240 42.086 278 140 7 7 264 4 280 1.40e-60 193
MS.gene07578.t1 AT2G02350 41.132 265 146 6 4 264 24 282 2.20e-60 193
MS.gene07578.t1 AT2G02320 40.977 266 141 7 6 264 42 298 2.02e-57 186
MS.gene07578.t1 AT2G02310 36.226 265 161 4 4 265 45 304 1.97e-53 176
MS.gene07578.t1 AT2G02300 38.519 270 136 8 4 265 34 281 7.07e-51 168
MS.gene07578.t1 AT5G24560 42.632 190 96 4 6 192 5 184 6.42e-45 150
MS.gene07578.t1 AT3G53000 28.777 278 167 8 4 264 21 284 4.21e-34 125
MS.gene07578.t1 AT2G02350 39.881 168 94 5 101 264 1 165 2.01e-31 115
MS.gene07578.t1 AT3G61060 25.806 279 163 8 6 265 27 280 9.66e-22 92.4
MS.gene07578.t1 AT1G33920 31.250 176 95 4 96 265 9 164 2.86e-21 88.2
MS.gene07578.t1 AT3G61060 25.090 279 166 7 6 265 27 281 3.23e-21 90.9
MS.gene07578.t1 AT4G19850 33.880 183 87 7 94 265 59 218 3.78e-20 86.7
MS.gene07578.t1 AT4G19850 33.880 183 87 7 94 265 17 176 4.23e-20 85.1
MS.gene07578.t1 AT1G12710 25.540 278 166 6 4 264 28 281 1.15e-19 86.7
MS.gene07578.t1 AT1G63090 28.571 203 123 5 4 189 26 223 1.20e-18 83.6
MS.gene07578.t1 AT4G19840 31.176 170 96 5 99 265 94 245 1.67e-17 79.7
MS.gene07578.t1 AT5G52120 26.644 289 161 9 1 264 18 280 7.87e-17 78.6
MS.gene07578.t1 AT1G12710 33.582 134 83 3 4 134 28 158 1.60e-14 72.8

Find 67 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCTGCATATTGAGTATT+TGG 0.137691 1.2:-62052048 None:intergenic
CTAGATCTCTTGCAATTGTT+TGG 0.246175 1.2:+62050663 MS.gene07578:CDS
TAGATCTCTTGCAATTGTTT+GGG 0.285923 1.2:+62050664 MS.gene07578:CDS
TGGAGATAAAGGCTCTTAAT+TGG 0.287168 1.2:+62052322 MS.gene07578:CDS
GATGAGTTTGTTGGAGATAA+AGG 0.307324 1.2:+62052311 MS.gene07578:CDS
TTCTTGAAGGAATAGAAATT+AGG 0.317502 1.2:+62052358 MS.gene07578:CDS
TGCCAACGCTCCCACCAAAA+AGG 0.334601 1.2:+62050423 MS.gene07578:CDS
AAGCTGCATATTGAGTATTT+GGG 0.334659 1.2:-62052047 None:intergenic
GGATTCCTTTGCCTGATTCC+AGG 0.335609 1.2:+62050711 MS.gene07578:CDS
GGGTGGTTGGAGATTGAGAT+AGG 0.335683 1.2:+62052249 MS.gene07578:CDS
TCAACAAGCTTAGCAACTTC+AGG 0.357954 1.2:-62051976 None:intergenic
TGATCATGATCGATGATGAT+AGG 0.375392 1.2:-62050472 None:intergenic
GTTCAAAATGATTGATGCTT+GGG 0.383807 1.2:+62052077 MS.gene07578:CDS
ATACCTTCCACTTCAACATT+TGG 0.389342 1.2:-62052177 None:intergenic
ATAGGGGAATTCTTCAGTTC+AGG 0.396633 1.2:+62052267 MS.gene07578:CDS
GCTGCTTAATTGTGTTACTT+AGG 0.411610 1.2:-62052381 None:intergenic
CATCCGATTCCGATGCTGTA+TGG 0.419002 1.2:+62050347 MS.gene07578:CDS
TAGTACTAAAATTGTCTGTT+TGG 0.420764 1.2:+62052152 MS.gene07578:CDS
GACAGAGATTCAGGATTTGC+CGG 0.423087 1.2:+62050240 MS.gene07578:CDS
AAGAGTGGTCTCTTTCTTGA+AGG 0.428845 1.2:+62052345 MS.gene07578:CDS
ATACTAAGCACTATTGGAAC+TGG 0.440686 1.2:+62050690 MS.gene07578:CDS
TGGAGTTGTACGAGAGACTA+TGG 0.442874 1.2:-62050278 None:intergenic
GGGGTGATACTAAGCACTAT+TGG 0.458105 1.2:+62050684 MS.gene07578:CDS
CTAAGCTTGTTGACGTATGT+TGG 0.459650 1.2:+62051986 MS.gene07578:CDS
GCGCTAACTAACCTGGAATC+AGG 0.472883 1.2:-62050722 None:intergenic
CATCATCGATCATGATCAAA+AGG 0.478451 1.2:+62050477 MS.gene07578:CDS
AGAAGTCCTGATGAGTTTGT+TGG 0.481141 1.2:+62052302 MS.gene07578:CDS
ATGGCGGCAATGCATCCTTC+CGG 0.482859 1.2:-62050259 None:intergenic
CGTCCTAGTGTGAGAAGCGA+TGG 0.485861 1.2:+62052228 MS.gene07578:CDS
TTATCTCCAACAAACTCATC+AGG 0.495784 1.2:-62052308 None:intergenic
ATTCCATACAGCATCGGAAT+CGG 0.497032 1.2:-62050350 None:intergenic
TGTTCAAAATGATTGATGCT+TGG 0.510985 1.2:+62052076 MS.gene07578:CDS
TTTCAATTGGACAGAAAGAG+TGG 0.517102 1.2:+62050617 MS.gene07578:CDS
GGATGCAGATCGGAAAGTCT+TGG 0.523752 1.2:-62050329 None:intergenic
GGTGGTTGGAGATTGAGATA+GGG 0.526497 1.2:+62052250 MS.gene07578:CDS
CAACAAGCTTAGCAACTTCA+GGG 0.526604 1.2:-62051975 None:intergenic
GAGAGTCTGCCGGCGTCGAG+TGG 0.527104 1.2:-62050298 None:intergenic
GTGGGAGCGTTGGCAAGGGA+AGG 0.528441 1.2:-62050415 None:intergenic
ATGCAGCATAACAGAGCAGT+AGG 0.534871 1.2:+62052198 MS.gene07578:CDS
CACCCATCGCTTCTCACACT+AGG 0.543006 1.2:-62052231 None:intergenic
CATCGGAATCGGATGCAGAT+CGG 0.545902 1.2:-62050339 None:intergenic
ATGATAGATGAGATGTCAGA+AGG 0.548763 1.2:-62050382 None:intergenic
AGATCTCTTGCAATTGTTTG+GGG 0.552612 1.2:+62050665 MS.gene07578:CDS
GAGATTCAGGATTTGCCGGA+AGG 0.560627 1.2:+62050244 MS.gene07578:CDS
GGGATTTCAGAACTGTCCTG+TGG 0.565853 1.2:+62052098 MS.gene07578:CDS
GTGGTTGGAGATTGAGATAG+GGG 0.569267 1.2:+62052251 MS.gene07578:CDS
GGAAACGACGGAGAGTCTGC+CGG 0.570360 1.2:-62050308 None:intergenic
AAGGCTCTTAATTGGAAGAG+TGG 0.575926 1.2:+62052330 MS.gene07578:CDS
TGTGAGAAGCGATGGGTGGT+TGG 0.576323 1.2:+62052236 MS.gene07578:CDS
GATCCAAATGTTGAAGTGGA+AGG 0.581219 1.2:+62052174 MS.gene07578:CDS
GTATGTTGGCTTGAAATTCG+TGG 0.591694 1.2:+62052000 MS.gene07578:CDS
TTTGGATCCAAATGTTGAAG+TGG 0.592404 1.2:+62052170 MS.gene07578:CDS
TTTGGTGGGAGCGTTGGCAA+GGG 0.595797 1.2:-62050419 None:intergenic
TTCAAAATGATTGATGCTTG+GGG 0.600421 1.2:+62052078 MS.gene07578:CDS
AGCTGCATATTGAGTATTTG+GGG 0.601395 1.2:-62052046 None:intergenic
TTATCAGTTGGTGTCGAAGG+TGG 0.605148 1.2:+62052123 MS.gene07578:CDS
ACACCAACTGATAACTCCAC+AGG 0.607721 1.2:-62052114 None:intergenic
GAGTTATCAGTTGGTGTCGA+AGG 0.620810 1.2:+62052120 MS.gene07578:CDS
AGTATTTGGGGACAGAACAA+TGG 0.623021 1.2:-62052034 None:intergenic
TGTCCTGTGGAGTTATCAGT+TGG 0.623846 1.2:+62052111 MS.gene07578:CDS
AAATTGATTCCATACAGCAT+CGG 0.632315 1.2:-62050356 None:intergenic
ACTAACCTGGAATCAGGCAA+AGG 0.635048 1.2:-62050716 None:intergenic
GTCCTAGTGTGAGAAGCGAT+GGG 0.643186 1.2:+62052229 MS.gene07578:CDS
TCGGAAAGTCTTGGAAACGA+CGG 0.681316 1.2:-62050320 None:intergenic
CTAGTGTGAGAAGCGATGGG+TGG 0.709944 1.2:+62052232 MS.gene07578:CDS
CGTACAACTCCACTCGACGC+CGG 0.717247 1.2:+62050289 MS.gene07578:CDS
AGTTGTACGAGAGACTATGG+CGG 0.789727 1.2:-62050275 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCTCGAATATAATATTA+AGG + chr1.2:62050524-62050543 MS.gene07578:intron 15.0%
!! TATTATATTCGAGAAATTGA+CGG - chr1.2:62050521-62050540 None:intergenic 20.0%
!! TTGTAAAGTAACAAACAAAT+TGG - chr1.2:62051400-62051419 None:intergenic 20.0%
!!! AAATTTTCAGAGTTTTCAAT+TGG + chr1.2:62050604-62050623 MS.gene07578:intron 20.0%
!!! ATTGAACATGCTTTAAATTT+GGG - chr1.2:62051099-62051118 None:intergenic 20.0%
!!! CTTTGTTTGATAAAAAATAG+TGG - chr1.2:62050862-62050881 None:intergenic 20.0%
!!! GTAAAATTTCTAAGAAAACA+TGG - chr1.2:62051545-62051564 None:intergenic 20.0%
!!! TGGTCAGATATTTTAAAATT+TGG - chr1.2:62051380-62051399 None:intergenic 20.0%
! ATACCATATATCAAAATCCA+TGG + chr1.2:62051047-62051066 MS.gene07578:intron 25.0%
! GATGCATTCAAAATCATATA+GGG - chr1.2:62051351-62051370 None:intergenic 25.0%
! TAGTACTAAAATTGTCTGTT+TGG + chr1.2:62052152-62052171 MS.gene07578:CDS 25.0%
! TCAAATATAACGGTTTGATT+CGG - chr1.2:62050785-62050804 None:intergenic 25.0%
! TGATGCATTCAAAATCATAT+AGG - chr1.2:62051352-62051371 None:intergenic 25.0%
! TGCTATTAGCTCAAATATAA+CGG - chr1.2:62050795-62050814 None:intergenic 25.0%
! TTCTTGAAGGAATAGAAATT+AGG + chr1.2:62052358-62052377 MS.gene07578:CDS 25.0%
!! GATTGAACATGCTTTAAATT+TGG - chr1.2:62051100-62051119 None:intergenic 25.0%
!! TGAAAACTCTGAAAATTTGA+AGG - chr1.2:62050602-62050621 None:intergenic 25.0%
!!! ATGGATTTTGATATATGGTA+TGG - chr1.2:62051048-62051067 None:intergenic 25.0%
!!! TAAGTTATATATGCCGTTTT+AGG - chr1.2:62051776-62051795 None:intergenic 25.0%
AAGCTGCATATTGAGTATTT+GGG - chr1.2:62052050-62052069 None:intergenic 30.0%
AATTGATCACGTCCATAAAA+AGG - chr1.2:62050891-62050910 None:intergenic 30.0%
ACCTTATGCAAAAGATTGAA+TGG - chr1.2:62051603-62051622 None:intergenic 30.0%
ACGTGATCAATTAATGTTGA+TGG + chr1.2:62050899-62050918 MS.gene07578:intron 30.0%
CATTCAAAATCATATAGGGT+CGG - chr1.2:62051347-62051366 None:intergenic 30.0%
CGTGATCAATTAATGTTGAT+GGG + chr1.2:62050900-62050919 MS.gene07578:intron 30.0%
GAATGTTGGATTTCCTAAAA+CGG + chr1.2:62051760-62051779 MS.gene07578:intron 30.0%
GATTGTCACAAAATAAGAGT+TGG - chr1.2:62051642-62051661 None:intergenic 30.0%
GTTCAAAATGATTGATGCTT+GGG + chr1.2:62052077-62052096 MS.gene07578:CDS 30.0%
TAAGCTGCATATTGAGTATT+TGG - chr1.2:62052051-62052070 None:intergenic 30.0%
TAGATCTCTTGCAATTGTTT+GGG + chr1.2:62050664-62050683 MS.gene07578:CDS 30.0%
TGTTCAAAATGATTGATGCT+TGG + chr1.2:62052076-62052095 MS.gene07578:CDS 30.0%
TTCAAAATGATTGATGCTTG+GGG + chr1.2:62052078-62052097 MS.gene07578:CDS 30.0%
! AAATTGATTCCATACAGCAT+CGG - chr1.2:62050359-62050378 None:intergenic 30.0%
! ACAAAGCCATATCCTTTTTA+TGG + chr1.2:62050876-62050895 MS.gene07578:intron 30.0%
! TCCTTTTAGGCTTTTAGTAT+GGG + chr1.2:62051730-62051749 MS.gene07578:intron 30.0%
!! AATTAATGTTGATGGGTTTC+AGG + chr1.2:62050907-62050926 MS.gene07578:intron 30.0%
!! AGACAATTTTAGTACTACTC+TGG - chr1.2:62052149-62052168 None:intergenic 30.0%
!! ATTAATGTTGATGGGTTTCA+GGG + chr1.2:62050908-62050927 MS.gene07578:intron 30.0%
!! GTGTTTTATTACATGACAGA+TGG - chr1.2:62051889-62051908 None:intergenic 30.0%
!! TAGCCATGGATTTTGATATA+TGG - chr1.2:62051053-62051072 None:intergenic 30.0%
!! TTTGTGTACTACTTTTGAAC+AGG + chr1.2:62051950-62051969 MS.gene07578:intron 30.0%
!!! TTTTTTGATCCTAATTGCTG+CGG + chr1.2:62051318-62051337 MS.gene07578:intron 30.0%
AGATCTCTTGCAATTGTTTG+GGG + chr1.2:62050665-62050684 MS.gene07578:CDS 35.0%
AGCTGCATATTGAGTATTTG+GGG - chr1.2:62052049-62052068 None:intergenic 35.0%
ATACCTTCCACTTCAACATT+TGG - chr1.2:62052180-62052199 None:intergenic 35.0%
ATACTAAGCACTATTGGAAC+TGG + chr1.2:62050690-62050709 MS.gene07578:CDS 35.0%
ATGATAGATGAGATGTCAGA+AGG - chr1.2:62050385-62050404 None:intergenic 35.0%
CACAAAATAAGAGTTGGAGT+TGG - chr1.2:62051636-62051655 None:intergenic 35.0%
CAGTTAATTCTTAGCAGATG+AGG - chr1.2:62050969-62050988 None:intergenic 35.0%
CATCATCGATCATGATCAAA+AGG + chr1.2:62050477-62050496 MS.gene07578:CDS 35.0%
CTAGATCTCTTGCAATTGTT+TGG + chr1.2:62050663-62050682 MS.gene07578:CDS 35.0%
GATACTTAGCTGAAGTGATA+TGG - chr1.2:62051185-62051204 None:intergenic 35.0%
GGGCATTCAAAAAGAATAAC+AGG + chr1.2:62050928-62050947 MS.gene07578:intron 35.0%
TATTCGAGAAATTGACGGTT+AGG - chr1.2:62050516-62050535 None:intergenic 35.0%
TCACGTCCATAAAAAGGATA+TGG - chr1.2:62050885-62050904 None:intergenic 35.0%
TCCAAATTCTCTAAGTCACA+AGG - chr1.2:62051152-62051171 None:intergenic 35.0%
TCCCATACTAAAAGCCTAAA+AGG - chr1.2:62051734-62051753 None:intergenic 35.0%
TCCTTGTGACTTAGAGAATT+TGG + chr1.2:62051148-62051167 MS.gene07578:intron 35.0%
TGATCATGATCGATGATGAT+AGG - chr1.2:62050475-62050494 None:intergenic 35.0%
TGGAGATAAAGGCTCTTAAT+TGG + chr1.2:62052322-62052341 MS.gene07578:CDS 35.0%
TTATCTCCAACAAACTCATC+AGG - chr1.2:62052311-62052330 None:intergenic 35.0%
TTTCAATTGGACAGAAAGAG+TGG + chr1.2:62050617-62050636 MS.gene07578:CDS 35.0%
TTTGGATCCAAATGTTGAAG+TGG + chr1.2:62052170-62052189 MS.gene07578:CDS 35.0%
! GCCATTCAATCTTTTGCATA+AGG + chr1.2:62051599-62051618 MS.gene07578:intron 35.0%
! GTCCTTTTAGGCTTTTAGTA+TGG + chr1.2:62051729-62051748 MS.gene07578:intron 35.0%
!! GATGAGTTTGTTGGAGATAA+AGG + chr1.2:62052311-62052330 MS.gene07578:CDS 35.0%
AACTGCAGAGTTACAGAAGA+AGG - chr1.2:62051276-62051295 None:intergenic 40.0%
AAGAGTGGTCTCTTTCTTGA+AGG + chr1.2:62052345-62052364 MS.gene07578:CDS 40.0%
AAGGCTCTTAATTGGAAGAG+TGG + chr1.2:62052330-62052349 MS.gene07578:CDS 40.0%
AAGTTAAGCGCTAACTAACC+TGG - chr1.2:62050732-62050751 None:intergenic 40.0%
ACACTTATCATGAGAACCTG+AGG + chr1.2:62051689-62051708 MS.gene07578:intron 40.0%
ACTTAGCTGAAGTGATATGG+AGG - chr1.2:62051182-62051201 None:intergenic 40.0%
AGAAGTCCTGATGAGTTTGT+TGG + chr1.2:62052302-62052321 MS.gene07578:CDS 40.0%
AGTATTTGGGGACAGAACAA+TGG - chr1.2:62052037-62052056 None:intergenic 40.0%
ATAGGGGAATTCTTCAGTTC+AGG + chr1.2:62052267-62052286 MS.gene07578:CDS 40.0%
CAAAAGATTGAATGGCCAGA+GGG - chr1.2:62051595-62051614 None:intergenic 40.0%
CAACAAGCTTAGCAACTTCA+GGG - chr1.2:62051978-62051997 None:intergenic 40.0%
CATCGATCATGATCAAAAGG+TGG + chr1.2:62050480-62050499 MS.gene07578:intron 40.0%
CATGTAGTGCATCTTCAATG+TGG - chr1.2:62051519-62051538 None:intergenic 40.0%
CCAAGTCAGTGAAGAATAGT+TGG + chr1.2:62051008-62051027 MS.gene07578:intron 40.0%
GAGTTACAGAAGAAGGATCT+TGG - chr1.2:62051269-62051288 None:intergenic 40.0%
GATCCAAATGTTGAAGTGGA+AGG + chr1.2:62052174-62052193 MS.gene07578:CDS 40.0%
GTATGGGAGAAGATGAATGT+TGG + chr1.2:62051746-62051765 MS.gene07578:intron 40.0%
TACATAGGCCAGATTGTGTA+AGG - chr1.2:62051462-62051481 None:intergenic 40.0%
TCAACAAGCTTAGCAACTTC+AGG - chr1.2:62051979-62051998 None:intergenic 40.0%
TCAGGTTCTCATGATAAGTG+TGG - chr1.2:62051690-62051709 None:intergenic 40.0%
TCCTTAGTCCTTACACAATC+TGG + chr1.2:62051451-62051470 MS.gene07578:intron 40.0%
! AGCAATGTCGATGTCCTTTT+AGG + chr1.2:62051717-62051736 MS.gene07578:intron 40.0%
! ATTCCATACAGCATCGGAAT+CGG - chr1.2:62050353-62050372 None:intergenic 40.0%
! CCAACTATTCTTCACTGACT+TGG - chr1.2:62051011-62051030 None:intergenic 40.0%
! TAAATTTGGGTTTGAACCCG+AGG - chr1.2:62051086-62051105 None:intergenic 40.0%
!! AGATACAGAGCCTTTTTGGT+GGG - chr1.2:62050436-62050455 None:intergenic 40.0%
!! CTAAGCTTGTTGACGTATGT+TGG + chr1.2:62051986-62052005 MS.gene07578:CDS 40.0%
!! GTATGTTGGCTTGAAATTCG+TGG + chr1.2:62052000-62052019 MS.gene07578:CDS 40.0%
AATCCCATCGAATTACCCTC+TGG + chr1.2:62051577-62051596 MS.gene07578:intron 45.0%
ACACCAACTGATAACTCCAC+AGG - chr1.2:62052117-62052136 None:intergenic 45.0%
ACTAACCTGGAATCAGGCAA+AGG - chr1.2:62050719-62050738 None:intergenic 45.0%
AGTTGTACGAGAGACTATGG+CGG - chr1.2:62050278-62050297 None:intergenic 45.0%
ATGCAGCATAACAGAGCAGT+AGG + chr1.2:62052198-62052217 MS.gene07578:CDS 45.0%
GACAGAGATTCAGGATTTGC+CGG + chr1.2:62050240-62050259 MS.gene07578:CDS 45.0%
GCAAAAGATTGAATGGCCAG+AGG - chr1.2:62051596-62051615 None:intergenic 45.0%
GCCAGATTGTGTAAGGACTA+AGG - chr1.2:62051455-62051474 None:intergenic 45.0%
GGCCTAGTAAGCTTCTACAT+AGG - chr1.2:62051477-62051496 None:intergenic 45.0%
GGCCTATGTAGAAGCTTACT+AGG + chr1.2:62051472-62051491 MS.gene07578:intron 45.0%
GGGGTGATACTAAGCACTAT+TGG + chr1.2:62050684-62050703 MS.gene07578:CDS 45.0%
GGTGGTTGGAGATTGAGATA+GGG + chr1.2:62052250-62052269 MS.gene07578:CDS 45.0%
GTGGTTGGAGATTGAGATAG+GGG + chr1.2:62052251-62052270 MS.gene07578:CDS 45.0%
TCGGAAAGTCTTGGAAACGA+CGG - chr1.2:62050323-62050342 None:intergenic 45.0%
TGGAGTTGTACGAGAGACTA+TGG - chr1.2:62050281-62050300 None:intergenic 45.0%
TGTCCTGTGGAGTTATCAGT+TGG + chr1.2:62052111-62052130 MS.gene07578:CDS 45.0%
! AGCGAGATACAGAGCCTTTT+TGG - chr1.2:62050440-62050459 None:intergenic 45.0%
! GAGATACAGAGCCTTTTTGG+TGG - chr1.2:62050437-62050456 None:intergenic 45.0%
! TTTTGCGTCCAACTTCAGCT+TGG + chr1.2:62051239-62051258 MS.gene07578:intron 45.0%
!! GAGTTATCAGTTGGTGTCGA+AGG + chr1.2:62052120-62052139 MS.gene07578:CDS 45.0%
!! TTATCAGTTGGTGTCGAAGG+TGG + chr1.2:62052123-62052142 MS.gene07578:CDS 45.0%
AGCTTACTAGGCCACATGTG+TGG + chr1.2:62051484-62051503 MS.gene07578:intron 50.0%
ATGGCCAGAGGGTAATTCGA+TGG - chr1.2:62051584-62051603 None:intergenic 50.0%
ATGGCTAGTAGCTACCACCT+CGG + chr1.2:62051066-62051085 MS.gene07578:intron 50.0%
CATCCGATTCCGATGCTGTA+TGG + chr1.2:62050347-62050366 MS.gene07578:CDS 50.0%
CATCGGAATCGGATGCAGAT+CGG - chr1.2:62050342-62050361 None:intergenic 50.0%
GAGATTCAGGATTTGCCGGA+AGG + chr1.2:62050244-62050263 MS.gene07578:CDS 50.0%
GCGCTAACTAACCTGGAATC+AGG - chr1.2:62050725-62050744 None:intergenic 50.0%
GGATGCAGATCGGAAAGTCT+TGG - chr1.2:62050332-62050351 None:intergenic 50.0%
GGATTCCTTTGCCTGATTCC+AGG + chr1.2:62050711-62050730 MS.gene07578:CDS 50.0%
GGGATTTCAGAACTGTCCTG+TGG + chr1.2:62052098-62052117 MS.gene07578:CDS 50.0%
GGGTGGTTGGAGATTGAGAT+AGG + chr1.2:62052249-62052268 MS.gene07578:CDS 50.0%
GTCCTAGTGTGAGAAGCGAT+GGG + chr1.2:62052229-62052248 MS.gene07578:CDS 50.0%
TCGACATTGCTATGTGCCTC+AGG - chr1.2:62051708-62051727 None:intergenic 50.0%
TGGCCAGAGGGTAATTCGAT+GGG - chr1.2:62051583-62051602 None:intergenic 50.0%
! ATTTGGGTTTGAACCCGAGG+TGG - chr1.2:62051083-62051102 None:intergenic 50.0%
ATGGCGGCAATGCATCCTTC+CGG - chr1.2:62050262-62050281 None:intergenic 55.0%
CACCCATCGCTTCTCACACT+AGG - chr1.2:62052234-62052253 None:intergenic 55.0%
CGTCCTAGTGTGAGAAGCGA+TGG + chr1.2:62052228-62052247 MS.gene07578:CDS 55.0%
CTAGTGTGAGAAGCGATGGG+TGG + chr1.2:62052232-62052251 MS.gene07578:CDS 55.0%
GAGGTGGTAGCTACTAGCCA+TGG - chr1.2:62051067-62051086 None:intergenic 55.0%
GGATCCAGTGTCCACACATG+TGG - chr1.2:62051498-62051517 None:intergenic 55.0%
TAGGCCACATGTGTGGACAC+TGG + chr1.2:62051491-62051510 MS.gene07578:intron 55.0%
TGCCAACGCTCCCACCAAAA+AGG + chr1.2:62050423-62050442 MS.gene07578:CDS 55.0%
TGGCTAGTAGCTACCACCTC+GGG + chr1.2:62051067-62051086 MS.gene07578:intron 55.0%
TGTGAGAAGCGATGGGTGGT+TGG + chr1.2:62052236-62052255 MS.gene07578:CDS 55.0%
TTGGCGCTCCAAGCTGAAGT+TGG - chr1.2:62051250-62051269 None:intergenic 55.0%
! GGTCGGTTTCCGCAGCAATT+AGG - chr1.2:62051330-62051349 None:intergenic 55.0%
!! AGCCTTTTTGGTGGGAGCGT+TGG - chr1.2:62050428-62050447 None:intergenic 55.0%
!! TTTGGTGGGAGCGTTGGCAA+GGG - chr1.2:62050422-62050441 None:intergenic 55.0%
!!! TTTTGGTGGGAGCGTTGGCA+AGG - chr1.2:62050423-62050442 None:intergenic 55.0%
CGTACAACTCCACTCGACGC+CGG + chr1.2:62050289-62050308 MS.gene07578:CDS 60.0%
GGAAACGACGGAGAGTCTGC+CGG - chr1.2:62050311-62050330 None:intergenic 60.0%
!! GTGGGAGCGTTGGCAAGGGA+AGG - chr1.2:62050418-62050437 None:intergenic 65.0%
! GAGAGTCTGCCGGCGTCGAG+TGG - chr1.2:62050301-62050320 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 62050238 62052389 62050238 ID=MS.gene07578
chr1.2 mRNA 62050238 62052389 62050238 ID=MS.gene07578.t1;Parent=MS.gene07578
chr1.2 exon 62050238 62050498 62050238 ID=MS.gene07578.t1.exon1;Parent=MS.gene07578.t1
chr1.2 CDS 62050238 62050498 62050238 ID=cds.MS.gene07578.t1;Parent=MS.gene07578.t1
chr1.2 exon 62050614 62050732 62050614 ID=MS.gene07578.t1.exon2;Parent=MS.gene07578.t1
chr1.2 CDS 62050614 62050732 62050614 ID=cds.MS.gene07578.t1;Parent=MS.gene07578.t1
chr1.2 exon 62051972 62052389 62051972 ID=MS.gene07578.t1.exon3;Parent=MS.gene07578.t1
chr1.2 CDS 62051972 62052389 62051972 ID=cds.MS.gene07578.t1;Parent=MS.gene07578.t1
Gene Sequence

>MS.gene07578

ATGACAGAGATTCAGGATTTGCCGGAAGGATGCATTGCCGCCATAGTCTCTCGTACAACTCCACTCGACGCCGGCAGACTCTCCGTCGTTTCCAAGACTTTCCGATCTGCATCCGATTCCGATGCTGTATGGAATCAATTTCTACCTTCTGACATCTCATCTATCATCTCACACTCTCCTTCCCTTGCCAACGCTCCCACCAAAAAGGCTCTGTATCTCGCTCTCTCTGATCGTCCTATCATCATCGATCATGATCAAAAGGTGGTATTCTTCTTCCTAACCGTCAATTTCTCGAATATAATATTAAGGCTTATAATTGAATTGATTTTTTAACATGTTTAGTTCATGATATGTTAATAAGCCTTCAAATTTTCAGAGTTTTCAATTGGACAGAAAGAGTGGAAAAAAATGTTACATGCTTTCTGCTAGATCTCTTGCAATTGTTTGGGGTGATACTAAGCACTATTGGAACTGGATTCCTTTGCCTGATTCCAGGTTAGTTAGCGCTTAACTTTTCTATTGATTTTATTTTATTTCTTGTTCTCCGAATCAAACCGTTATATTTGAGCTAATAGCATAATATGTTATCTGCTATAAGTTAGCTTATCAGCTATAAGCTATCCACTATTTTTTATCAAACAAAGCCATATCCTTTTTATGGACGTGATCAATTAATGTTGATGGGTTTCAGGGCATTCAAAAAGAATAACAGGTTGAATATACTCTTTCCTCATCTGCTAAGAATTAACTGACTTTTGCTATCTTCTAATCCAAGTCAGTGAAGAATAGTTGGTGTAGTGTTATAAGCCATACCATATATCAAAATCCATGGCTAGTAGCTACCACCTCGGGTTCAAACCCAAATTTAAAGCATGTTCAATCAAACAAATGCTTGCGAAAATTTCTCATGTCCTTGTGACTTAGAGAATTTGGAGTCTGTTCCTCCATATCACTTCAGCTAAGTATCAGCAACATGTATGCGTGCTCTTCATTCAACTATCTTTTGCGTCCAACTTCAGCTTGGAGCGCCAAGATCCTTCTTCTGTAACTCTGCAGTTTTTGCTTCATCTGCAGACTTTCTTTTTTGATCCTAATTGCTGCGGAAACCGACCCTATATGATTTTGAATGCATCATTTTACCAAATTTTAAAATATCTGACCAATTTGTTTGTTACTTTACAACTAAAGATGTAGTTCTTATTTTAAGACTTCATCCTTAGTCCTTACACAATCTGGCCTATGTAGAAGCTTACTAGGCCACATGTGTGGACACTGGATCCACATTGAAGATGCACTACATGTAGCCATGTTTTCTTAGAAATTTTACTTTTTATCAAGAAATCCCATCGAATTACCCTCTGGCCATTCAATCTTTTGCATAAGGTTGTCATTTGTCCAACTCCAACTCTTATTTTGTGACAATCATGCAGTTGTCTATATTGCTTATATCCACACTTATCATGAGAACCTGAGGCACATAGCAATGTCGATGTCCTTTTAGGCTTTTAGTATGGGAGAAGATGAATGTTGGATTTCCTAAAACGGCATATATAACTTATTCACTGAGAAGTCTGTCATTTAGTTTCAGCTTGAAATACTTAGTTATGCTTCATATATATATGCACACACACACACACACACACACACTCCATCTGTCATGTAATAAAACACTTTCAACGTTTCTCAGTTATTATGTTCTAATTTTTGCATCTTTTGTGTACTACTTTTGAACAGGTTCCCTGAAGTTGCTAAGCTTGTTGACGTATGTTGGCTTGAAATTCGTGGTGTGATAAACACCATTGTTCTGTCCCCAAATACTCAATATGCAGCTTATGTTGTGTTCAAAATGATTGATGCTTGGGGATTTCAGAACTGTCCTGTGGAGTTATCAGTTGGTGTCGAAGGTGGCCAGAGTAGTACTAAAATTGTCTGTTTGGATCCAAATGTTGAAGTGGAAGGTATGCAGCATAACAGAGCAGTAGGATTGCAACGTCCTAGTGTGAGAAGCGATGGGTGGTTGGAGATTGAGATAGGGGAATTCTTCAGTTCAGGCATAGAAAATGAAGAAGTCCTGATGAGTTTGTTGGAGATAAAGGCTCTTAATTGGAAGAGTGGTCTCTTTCTTGAAGGAATAGAAATTAGGCCTAAGTAA
Protein sequence

>MS.gene07578.t1

MTEIQDLPEGCIAAIVSRTTPLDAGRLSVVSKTFRSASDSDAVWNQFLPSDISSIISHSPSLANAPTKKALYLALSDRPIIIDHDQKSFQLDRKSGKKCYMLSARSLAIVWGDTKHYWNWIPLPDSRFPEVAKLVDVCWLEIRGVINTIVLSPNTQYAAYVVFKMIDAWGFQNCPVELSVGVEGGQSSTKIVCLDPNVEVEGMQHNRAVGLQRPSVRSDGWLEIEIGEFFSSGIENEEVLMSLLEIKALNWKSGLFLEGIEIRPK