AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51502

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51502.t1 MTR_3g006850 87.702 309 35 1 1 309 13 318 0.0 523
MS.gene51502.t1 MTR_1g100597 62.745 306 81 7 4 309 3 275 2.57e-122 352
MS.gene51502.t1 MTR_1g079370 58.609 302 85 5 5 306 4 265 1.01e-114 332
MS.gene51502.t1 MTR_1g079180 60.265 302 80 6 5 306 4 265 3.41e-114 331
MS.gene51502.t1 MTR_1g079230 59.672 305 91 6 5 309 4 276 4.76e-114 331
MS.gene51502.t1 MTR_3g452600 57.705 305 85 4 5 309 10 270 2.47e-110 321
MS.gene51502.t1 MTR_1g079460 57.705 305 90 3 5 309 4 269 5.97e-110 320
MS.gene51502.t1 MTR_1g079260 57.605 309 94 8 3 309 2 275 1.74e-109 319
MS.gene51502.t1 MTR_1g079850 57.792 308 102 5 4 309 3 284 4.39e-109 318
MS.gene51502.t1 MTR_1g079200 58.224 304 82 6 5 306 4 264 4.25e-106 310
MS.gene51502.t1 MTR_1g100613 61.887 265 73 6 21 285 5 241 1.02e-101 298
MS.gene51502.t1 MTR_1g079380 57.096 303 88 6 5 306 4 265 1.75e-98 292
MS.gene51502.t1 MTR_1g026510 52.564 312 116 5 3 309 2 286 6.91e-96 285
MS.gene51502.t1 MTR_1g079250 54.516 310 108 6 3 309 2 281 3.82e-95 283
MS.gene51502.t1 MTR_3g450990 51.393 323 93 7 5 309 10 286 2.33e-94 281
MS.gene51502.t1 MTR_2g079100 53.642 302 90 6 4 303 8 261 3.17e-93 278
MS.gene51502.t1 MTR_1g079350 47.923 313 115 7 3 306 2 275 1.37e-82 251
MS.gene51502.t1 MTR_1g079410 46.154 312 120 7 2 307 5 274 1.00e-77 238
MS.gene51502.t1 MTR_7g096300 50.847 295 95 8 3 293 2 250 2.22e-74 243
MS.gene51502.t1 MTR_1g079340 46.372 317 125 8 3 306 41 325 6.45e-74 230
MS.gene51502.t1 MTR_1g079140 43.125 320 140 11 7 309 15 309 1.70e-65 208
MS.gene51502.t1 MTR_1g076870 66.887 151 32 3 142 288 2 138 6.36e-61 191
MS.gene51502.t1 MTR_1g079400 39.432 317 134 7 2 306 9 279 8.47e-59 190
MS.gene51502.t1 MTR_7g112550 42.718 309 132 13 8 306 10 283 7.62e-54 177
MS.gene51502.t1 MTR_1g078470 47.887 213 69 5 94 306 14 184 4.61e-50 164
MS.gene51502.t1 MTR_1g083580 36.039 308 157 9 5 306 8 281 4.19e-47 160
MS.gene51502.t1 MTR_7g112560 33.993 303 153 8 5 306 1 257 2.47e-45 154
MS.gene51502.t1 MTR_1g079350 56.209 153 51 3 3 151 2 142 4.38e-45 152
MS.gene51502.t1 MTR_1g079240 43.363 226 77 7 84 306 2 179 2.11e-41 142
MS.gene51502.t1 MTR_4g023570 32.673 303 137 7 5 306 1 237 1.80e-38 136
MS.gene51502.t1 MTR_7g096310 54.225 142 47 3 61 200 38 163 7.12e-36 127
MS.gene51502.t1 MTR_2g042540 63.810 105 35 2 4 107 3 105 4.66e-35 124
MS.gene51502.t1 MTR_1g079210 49.635 137 55 2 143 279 7 129 1.90e-31 115
MS.gene51502.t1 MTR_1g079130 38.318 214 101 6 105 309 1 192 2.83e-31 116
MS.gene51502.t1 MTR_3g058640 50.781 128 35 2 142 269 7 106 3.35e-31 113
MS.gene51502.t1 MTR_1g078460 65.909 88 27 1 4 91 66 150 6.90e-31 114
MS.gene51502.t1 MTR_0113s0040 28.169 213 129 5 2 202 19 219 3.26e-18 83.2
MS.gene51502.t1 MTR_7g103380 24.434 221 143 7 1 209 15 223 9.22e-16 76.6
MS.gene51502.t1 MTR_1g079220 43.617 94 25 2 179 272 1 66 1.92e-15 70.5
MS.gene51502.t1 MTR_0002s0020 25.551 227 138 7 1 209 18 231 3.03e-14 72.0
MS.gene51502.t1 MTR_1g101390 26.636 214 129 8 3 202 26 225 1.03e-13 70.5
MS.gene51502.t1 MTR_4g102770 30.769 156 93 4 5 158 19 161 1.78e-13 69.7
MS.gene51502.t1 MTR_1g079390 64.706 51 15 2 251 301 8 55 9.53e-13 62.4
MS.gene51502.t1 MTR_1g050352 46.392 97 41 4 2 95 24 112 4.14e-12 63.5
MS.gene51502.t1 MTR_5g010800 28.931 159 101 4 3 161 15 161 2.59e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51502.t1 AT2G02360 37.013 308 142 9 3 307 12 270 3.13e-54 178
MS.gene51502.t1 AT1G80110 37.542 301 142 6 5 305 1 255 2.45e-51 170
MS.gene51502.t1 AT1G56250 38.816 304 155 9 8 306 4 281 5.67e-48 162
MS.gene51502.t1 AT1G09155 37.942 311 148 10 8 306 3 280 7.64e-47 159
MS.gene51502.t1 AT2G02230 32.424 330 173 10 5 309 32 336 2.36e-46 159
MS.gene51502.t1 AT2G02340 34.405 311 153 10 3 305 34 301 1.07e-45 157
MS.gene51502.t1 AT1G56240 36.964 303 160 9 8 305 4 280 2.71e-45 155
MS.gene51502.t1 AT2G02350 33.548 310 158 9 1 307 20 284 1.04e-44 154
MS.gene51502.t1 AT2G02240 34.304 309 154 9 3 309 59 320 1.07e-43 152
MS.gene51502.t1 AT2G02250 34.202 307 150 10 5 307 47 305 1.41e-42 149
MS.gene51502.t1 AT2G02310 31.596 307 162 9 3 306 43 304 1.18e-38 139
MS.gene51502.t1 AT2G02320 31.715 309 161 10 4 308 39 301 2.91e-35 130
MS.gene51502.t1 AT5G24560 37.374 198 96 7 7 200 5 178 1.09e-31 117
MS.gene51502.t1 AT2G02300 29.808 312 149 9 3 306 32 281 1.83e-30 116
MS.gene51502.t1 AT3G53000 25.203 246 156 7 1 232 17 248 7.22e-17 79.7
MS.gene51502.t1 AT3G61060 28.205 156 96 5 5 158 25 166 2.54e-14 72.4
MS.gene51502.t1 AT1G63090 27.149 221 127 10 1 204 22 225 3.08e-14 72.0
MS.gene51502.t1 AT3G61060 26.282 156 100 4 5 158 25 167 2.16e-13 69.7
MS.gene51502.t1 AT1G12710 24.123 228 142 8 1 213 24 235 1.19e-12 67.4

Find 74 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCCGCATACCGAGTATTT+TGG 0.178783 3.4:-2735157 None:intergenic
TGAAATTCAGAGCTTTAAAT+TGG 0.211874 3.4:+2734365 MS.gene51502:intron
CTGCAGATTCCGACGTTGTT+TGG 0.234578 3.4:+2734031 MS.gene51502:CDS
GGCAGCTTTAGATGAATTTC+CGG 0.289937 3.4:+2733924 MS.gene51502:CDS
TGCTTTGTTGCGTGAAGCTT+TGG 0.305763 3.4:-2735288 None:intergenic
GGTTGCAAATGTCTCGGTTT+TGG 0.308941 3.4:+2735359 MS.gene51502:CDS
TGCCAACGCTCCCACCAAAA+AGG 0.326568 3.4:+2734116 MS.gene51502:CDS
CAACCATCACTTCTCATACT+AGG 0.328537 3.4:-2735419 None:intergenic
TTGGAACCACTTTCTCCCTT+TGG 0.330062 3.4:+2734050 MS.gene51502:CDS
TTTGGACTTCTTCTCCTTCA+AGG 0.330762 3.4:-2735478 None:intergenic
CGCTGCAATCCTATTACATT+CGG 0.339333 3.4:-2735395 None:intergenic
TTTCCTCGACAACACTCATT+TGG 0.340801 3.4:-2735496 None:intergenic
ACATCAATTGATAGGTTCAT+AGG 0.348387 3.4:-2735224 None:intergenic
CGACCATGATCGATGATGAT+TGG 0.368659 3.4:-2734165 None:intergenic
AGGCTGTACCCGAATGTAAT+AGG 0.371608 3.4:+2735386 MS.gene51502:CDS
TTCTTCAATTCAAGCCTTGA+AGG 0.372375 3.4:+2735464 MS.gene51502:CDS
AGACAAAGCTTAGCGACTTC+AGG 0.392944 3.4:-2735086 None:intergenic
TTCAAGATGATTGATGACTA+TGG 0.395723 3.4:+2735188 MS.gene51502:CDS
AATGAGTGTTGTCGAGGAAA+TGG 0.401258 3.4:+2735499 MS.gene51502:CDS
TTCTTGAAGGAATAGAAGTT+AGG 0.408541 3.4:+2735549 MS.gene51502:CDS
CACCTTCTACATCAATTGAT+AGG 0.413511 3.4:-2735232 None:intergenic
AAGGGAAATATCTTTCTTGA+AGG 0.431692 3.4:+2735536 MS.gene51502:CDS
GACCATGATCGATGATGATT+GGG 0.433866 3.4:-2734164 None:intergenic
GGATTCATATGAATGATTCC+AGG 0.439610 3.4:+2734502 MS.gene51502:CDS
AACCTATCAATTGATGTAGA+AGG 0.444640 3.4:+2735230 MS.gene51502:CDS
ATGGCTGAGATGCATCCTTC+CGG 0.445419 3.4:-2733943 None:intergenic
GCTTTGTTGCGTGAAGCTTT+GGG 0.446222 3.4:-2735287 None:intergenic
GAGAGTCTGCAAACATCAAC+GGG 0.459322 3.4:-2733982 None:intergenic
CAGCACTAAATCTGTATGCT+TGG 0.463768 3.4:+2735262 MS.gene51502:CDS
TTTAAATTGGATAGGAAAAG+TGG 0.463958 3.4:+2734378 MS.gene51502:CDS
AAAACGTCCGCGCTTGTAGT+AGG 0.467367 3.4:-2735333 None:intergenic
TATCAGAGAGAGCGAGATAG+AGG 0.472204 3.4:-2734140 None:intergenic
AACCATCACTTCTCATACTA+GGG 0.492010 3.4:-2735418 None:intergenic
GATGATTGAGTTAATGAGAC+GGG 0.495408 3.4:-2734076 None:intergenic
CTCACCATTCATTGCGGTGA+TGG 0.501864 3.4:+2734432 MS.gene51502:CDS
AATGGAGACTGGCAAGATGA+AGG 0.507648 3.4:+2735517 MS.gene51502:CDS
AATAGAAGTTAGGCCTAAGA+AGG 0.511840 3.4:+2735559 MS.gene51502:CDS
ATACAGATTTAGTGCTGCTA+TGG 0.515390 3.4:-2735256 None:intergenic
GTCACCATCACCGCAATGAA+TGG 0.517575 3.4:-2734436 None:intergenic
AGCCCAATCATCATCGATCA+TGG 0.522783 3.4:+2734162 MS.gene51502:CDS
TATGAGAAGTGATGGTTGGT+TGG 0.523435 3.4:+2735424 MS.gene51502:CDS
GTGGGAGCGTTGGCAAGGGA+AGG 0.528441 3.4:-2734108 None:intergenic
GCTGCAATCCTATTACATTC+GGG 0.532318 3.4:-2735394 None:intergenic
CGCCCTAGTATGAGAAGTGA+TGG 0.533372 3.4:+2735416 MS.gene51502:CDS
AAAACCGAGACATTTGCAAC+CGG 0.536006 3.4:-2735357 None:intergenic
GGTTGGTTGGAGATCGAGAT+GGG 0.544173 3.4:+2735437 MS.gene51502:CDS
ATGGAGACTGGCAAGATGAA+GGG 0.545643 3.4:+2735518 MS.gene51502:CDS
TTCAGAGCTTTAAATTGGAT+AGG 0.554237 3.4:+2734370 MS.gene51502:intron
CGTCGGAATCTGCAGCAGAA+AGG 0.560540 3.4:-2734023 None:intergenic
TTTCCTTGTCCCAAAATACT+CGG 0.564789 3.4:+2735147 MS.gene51502:CDS
GGGAATCCAAAGGGAGAAAG+TGG 0.566909 3.4:-2734056 None:intergenic
GGGAGTCGTACGAGACAGAA+TGG 0.578951 3.4:-2733962 None:intergenic
GGAGAGTCTGCAAACATCAA+CGG 0.582704 3.4:-2733983 None:intergenic
GTTGTCGAGGAAATGGAGAC+TGG 0.585226 3.4:+2735506 MS.gene51502:CDS
AAGGAAAGTCTTAGAAACAA+GGG 0.585673 3.4:-2734004 None:intergenic
TTTACCGGTTGCAAATGTCT+CGG 0.586991 3.4:+2735353 MS.gene51502:CDS
AAAGGAAAGTCTTAGAAACA+AGG 0.587344 3.4:-2734005 None:intergenic
TAATGAGACGGGAATCCAAA+GGG 0.591503 3.4:-2734065 None:intergenic
TTTGGTGGGAGCGTTGGCAA+GGG 0.595797 3.4:-2734112 None:intergenic
CATCATCGATCATGGTCGAA+AGG 0.598086 3.4:+2734170 MS.gene51502:CDS
ACAAAGCAATAACGTGCTCA+AGG 0.599590 3.4:+2735303 MS.gene51502:CDS
TGGTTGGTTGGAGATCGAGA+TGG 0.608638 3.4:+2735436 MS.gene51502:CDS
AACTACTCACTGATAAAGAG+TGG 0.609965 3.4:+2734481 MS.gene51502:CDS
ATCAGAGAGAGCGAGATAGA+GGG 0.619326 3.4:-2734139 None:intergenic
GCTTTAGATGAATTTCCGGA+AGG 0.627045 3.4:+2733928 MS.gene51502:CDS
GTCCCAAAATACTCGGTATG+CGG 0.633068 3.4:+2735154 MS.gene51502:CDS
AGTCCAAATGAGTGTTGTCG+AGG 0.638213 3.4:+2735493 MS.gene51502:CDS
CTAGTATGAGAAGTGATGGT+TGG 0.640337 3.4:+2735420 MS.gene51502:CDS
CTATCAATTGATGTAGAAGG+TGG 0.650147 3.4:+2735233 MS.gene51502:CDS
TTAATGAGACGGGAATCCAA+AGG 0.670447 3.4:-2734066 None:intergenic
AGATGATTGAGTTAATGAGA+CGG 0.677551 3.4:-2734077 None:intergenic
AAGCACACCTACTACAAGCG+CGG 0.701142 3.4:+2735326 MS.gene51502:CDS
AGATCTCTCACCATTCATTG+CGG 0.710070 3.4:+2734426 MS.gene51502:CDS
AAAGTGGTTCCAAACAACGT+CGG 0.722695 3.4:-2734040 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAACTAACC+TGG - chr3.4:2734523-2734542 None:intergenic 15.0%
!!! TATTCACTTATAATTTTCTT+TGG - chr3.4:2734741-2734760 None:intergenic 15.0%
!!! TTATTGATTTAAGATGTTTT+CGG + chr3.4:2734319-2734338 MS.gene51502:intron 15.0%
!! AAATTATAAGTGAATACTTC+TGG + chr3.4:2734745-2734764 MS.gene51502:intron 20.0%
!! AACCTTTATGAATACTAAAT+TGG + chr3.4:2734581-2734600 MS.gene51502:intron 20.0%
!! AATTGGGTTAAATAAGTAAA+TGG + chr3.4:2734598-2734617 MS.gene51502:intron 20.0%
!! ACCTTTATGAATACTAAATT+GGG + chr3.4:2734582-2734601 MS.gene51502:intron 20.0%
!! ATTCATAAAGGTTTAGAAAT+AGG - chr3.4:2734574-2734593 None:intergenic 20.0%
!! TAAAGCTTAATATTAGTGAT+GGG + chr3.4:2734807-2734826 MS.gene51502:intron 20.0%
!! TAATAGTATCATTAACACAA+TGG - chr3.4:2734548-2734567 None:intergenic 20.0%
!! TTAAAGCTTAATATTAGTGA+TGG + chr3.4:2734877-2734896 MS.gene51502:intron 20.0%
!!! AAAGGTATTCTTTTTCATAA+CGG + chr3.4:2734188-2734207 MS.gene51502:intron 20.0%
!!! AGACTATGAAAAATTTTTGA+GGG - chr3.4:2734625-2734644 None:intergenic 20.0%
!!! TAGACTATGAAAAATTTTTG+AGG - chr3.4:2734626-2734645 None:intergenic 20.0%
! ACCCAATTTAGTATTCATAA+AGG - chr3.4:2734586-2734605 None:intergenic 25.0%
! ATTAAGAGAATTATCAGAGA+GGG - chr3.4:2734835-2734854 None:intergenic 25.0%
! ATTCATGTGTAAGTTAACTT+TGG - chr3.4:2734786-2734805 None:intergenic 25.0%
! CCTTAATAAAAGAGAAACTA+GGG - chr3.4:2734298-2734317 None:intergenic 25.0%
! CTAAAGCTTAATATTAGTGA+TGG + chr3.4:2734806-2734825 MS.gene51502:intron 25.0%
! CTCTGAATTTCATATATTCA+AGG - chr3.4:2734357-2734376 None:intergenic 25.0%
! TATTAAGAGAATTATCAGAG+AGG - chr3.4:2734836-2734855 None:intergenic 25.0%
! TTCATGTGTAAGTTAACTTT+GGG - chr3.4:2734785-2734804 None:intergenic 25.0%
! TTGTCTTTGCAATTATTTAC+AGG + chr3.4:2735060-2735079 MS.gene51502:intron 25.0%
! TTTAAATTGGATAGGAAAAG+TGG + chr3.4:2734378-2734397 MS.gene51502:CDS 25.0%
!! ATCAACTAAAGTTTGGATTT+TGG - chr3.4:2734947-2734966 None:intergenic 25.0%
!!! TGAAATTCAGAGCTTTAAAT+TGG + chr3.4:2734365-2734384 MS.gene51502:intron 25.0%
AAAGGAAAGTCTTAGAAACA+AGG - chr3.4:2734008-2734027 None:intergenic 30.0%
AACCTATCAATTGATGTAGA+AGG + chr3.4:2735230-2735249 MS.gene51502:CDS 30.0%
AAGGAAAGTCTTAGAAACAA+GGG - chr3.4:2734007-2734026 None:intergenic 30.0%
AAGGGAAATATCTTTCTTGA+AGG + chr3.4:2735536-2735555 MS.gene51502:CDS 30.0%
ACATCAATTGATAGGTTCAT+AGG - chr3.4:2735227-2735246 None:intergenic 30.0%
AGATGATTGAGTTAATGAGA+CGG - chr3.4:2734080-2734099 None:intergenic 30.0%
ATTGCAAAGACAAGAATACA+AGG - chr3.4:2735053-2735072 None:intergenic 30.0%
GAATATTTATTTGCGTAGTG+TGG + chr3.4:2734648-2734667 MS.gene51502:intron 30.0%
GCCTTAATAAAAGAGAAACT+AGG - chr3.4:2734299-2734318 None:intergenic 30.0%
TAGACTCATCAACTAAAGTT+TGG - chr3.4:2734954-2734973 None:intergenic 30.0%
TATAATACCCCATATGTGAT+GGG + chr3.4:2734997-2735016 MS.gene51502:intron 30.0%
TTAAGAGAATTATCAGAGAG+GGG - chr3.4:2734834-2734853 None:intergenic 30.0%
TTCTTGAAGGAATAGAAGTT+AGG + chr3.4:2735549-2735568 MS.gene51502:CDS 30.0%
! CCCTAGTTTCTCTTTTATTA+AGG + chr3.4:2734295-2734314 MS.gene51502:intron 30.0%
! TTCAAGATGATTGATGACTA+TGG + chr3.4:2735188-2735207 MS.gene51502:CDS 30.0%
!! TTCAGAGCTTTAAATTGGAT+AGG + chr3.4:2734370-2734389 MS.gene51502:intron 30.0%
AACCATCACTTCTCATACTA+GGG - chr3.4:2735421-2735440 None:intergenic 35.0%
AACTACTCACTGATAAAGAG+TGG + chr3.4:2734481-2734500 MS.gene51502:CDS 35.0%
AATAGAAGTTAGGCCTAAGA+AGG + chr3.4:2735559-2735578 MS.gene51502:CDS 35.0%
ATTCATACCCATCACATATG+GGG - chr3.4:2735007-2735026 None:intergenic 35.0%
ATTGAGAAACTTCTCAGTGA+GGG - chr3.4:2734906-2734925 None:intergenic 35.0%
CACCTTCTACATCAATTGAT+AGG - chr3.4:2735235-2735254 None:intergenic 35.0%
CTATCAATTGATGTAGAAGG+TGG + chr3.4:2735233-2735252 MS.gene51502:CDS 35.0%
GATGATTGAGTTAATGAGAC+GGG - chr3.4:2734079-2734098 None:intergenic 35.0%
GATTCATACCCATCACATAT+GGG - chr3.4:2735008-2735027 None:intergenic 35.0%
GGATTCATATGAATGATTCC+AGG + chr3.4:2734502-2734521 MS.gene51502:CDS 35.0%
GTATAATACCCCATATGTGA+TGG + chr3.4:2734996-2735015 MS.gene51502:intron 35.0%
TATTGAGAAACTTCTCAGTG+AGG - chr3.4:2734907-2734926 None:intergenic 35.0%
TGATTCATACCCATCACATA+TGG - chr3.4:2735009-2735028 None:intergenic 35.0%
TTCTTCAATTCAAGCCTTGA+AGG + chr3.4:2735464-2735483 MS.gene51502:CDS 35.0%
TTTCCTTGTCCCAAAATACT+CGG + chr3.4:2735147-2735166 MS.gene51502:CDS 35.0%
! ATACAGATTTAGTGCTGCTA+TGG - chr3.4:2735259-2735278 None:intergenic 35.0%
! GAAAGTTAGAAGCATGACAA+AGG - chr3.4:2734716-2734735 None:intergenic 35.0%
AAAACCGAGACATTTGCAAC+CGG - chr3.4:2735360-2735379 None:intergenic 40.0%
AAAGTGGTTCCAAACAACGT+CGG - chr3.4:2734043-2734062 None:intergenic 40.0%
ACAAAGCAATAACGTGCTCA+AGG + chr3.4:2735303-2735322 MS.gene51502:CDS 40.0%
AGATCTCTCACCATTCATTG+CGG + chr3.4:2734426-2734445 MS.gene51502:CDS 40.0%
CAACCATCACTTCTCATACT+AGG - chr3.4:2735422-2735441 None:intergenic 40.0%
CAGCACTAAATCTGTATGCT+TGG + chr3.4:2735262-2735281 MS.gene51502:CDS 40.0%
CGCTGCAATCCTATTACATT+CGG - chr3.4:2735398-2735417 None:intergenic 40.0%
CTAGTATGAGAAGTGATGGT+TGG + chr3.4:2735420-2735439 MS.gene51502:CDS 40.0%
GACCATGATCGATGATGATT+GGG - chr3.4:2734167-2734186 None:intergenic 40.0%
GAGAAGTTTCTCAATACGCT+TGG + chr3.4:2734911-2734930 MS.gene51502:intron 40.0%
GCTGCAATCCTATTACATTC+GGG - chr3.4:2735397-2735416 None:intergenic 40.0%
TAATGAGACGGGAATCCAAA+GGG - chr3.4:2734068-2734087 None:intergenic 40.0%
TATGAGAAGTGATGGTTGGT+TGG + chr3.4:2735424-2735443 MS.gene51502:CDS 40.0%
TTAATGAGACGGGAATCCAA+AGG - chr3.4:2734069-2734088 None:intergenic 40.0%
TTGAGAAACTTCTCAGTGAG+GGG - chr3.4:2734905-2734924 None:intergenic 40.0%
TTTCCTCGACAACACTCATT+TGG - chr3.4:2735499-2735518 None:intergenic 40.0%
TTTGGACTTCTTCTCCTTCA+AGG - chr3.4:2735481-2735500 None:intergenic 40.0%
! AATGAGTGTTGTCGAGGAAA+TGG + chr3.4:2735499-2735518 MS.gene51502:CDS 40.0%
! GCTTTAGATGAATTTCCGGA+AGG + chr3.4:2733928-2733947 MS.gene51502:CDS 40.0%
! TTTACCGGTTGCAAATGTCT+CGG + chr3.4:2735353-2735372 MS.gene51502:CDS 40.0%
!! GGCAGCTTTAGATGAATTTC+CGG + chr3.4:2733924-2733943 MS.gene51502:CDS 40.0%
!!! ATACCGAGTATTTTGGGACA+AGG - chr3.4:2735153-2735172 None:intergenic 40.0%
AATGGAGACTGGCAAGATGA+AGG + chr3.4:2735517-2735536 MS.gene51502:CDS 45.0%
AGACAAAGCTTAGCGACTTC+AGG - chr3.4:2735089-2735108 None:intergenic 45.0%
AGCCCAATCATCATCGATCA+TGG + chr3.4:2734162-2734181 MS.gene51502:CDS 45.0%
AGGCTGTACCCGAATGTAAT+AGG + chr3.4:2735386-2735405 MS.gene51502:CDS 45.0%
ATCAGAGAGAGCGAGATAGA+GGG - chr3.4:2734142-2734161 None:intergenic 45.0%
ATGGAGACTGGCAAGATGAA+GGG + chr3.4:2735518-2735537 MS.gene51502:CDS 45.0%
CATCATCGATCATGGTCGAA+AGG + chr3.4:2734170-2734189 MS.gene51502:CDS 45.0%
CGACCATGATCGATGATGAT+TGG - chr3.4:2734168-2734187 None:intergenic 45.0%
GAGAGTCTGCAAACATCAAC+GGG - chr3.4:2733985-2734004 None:intergenic 45.0%
GGAGAGTCTGCAAACATCAA+CGG - chr3.4:2733986-2734005 None:intergenic 45.0%
GTCCCAAAATACTCGGTATG+CGG + chr3.4:2735154-2735173 MS.gene51502:CDS 45.0%
TATCAGAGAGAGCGAGATAG+AGG - chr3.4:2734143-2734162 None:intergenic 45.0%
TTGGAACCACTTTCTCCCTT+TGG + chr3.4:2734050-2734069 MS.gene51502:CDS 45.0%
! AAGCCGCATACCGAGTATTT+TGG - chr3.4:2735160-2735179 None:intergenic 45.0%
! AGCCGCATACCGAGTATTTT+GGG - chr3.4:2735159-2735178 None:intergenic 45.0%
! AGTCCAAATGAGTGTTGTCG+AGG + chr3.4:2735493-2735512 MS.gene51502:CDS 45.0%
! GCTTTGTTGCGTGAAGCTTT+GGG - chr3.4:2735290-2735309 None:intergenic 45.0%
! GGTTGCAAATGTCTCGGTTT+TGG + chr3.4:2735359-2735378 MS.gene51502:CDS 45.0%
! GTGTTTTCGCTCGAAATTCG+TGG + chr3.4:2735110-2735129 MS.gene51502:CDS 45.0%
! TGCTTTGTTGCGTGAAGCTT+TGG - chr3.4:2735291-2735310 None:intergenic 45.0%
!! AGATAGAGGGCCTTTTTGGT+GGG - chr3.4:2734129-2734148 None:intergenic 45.0%
!!! AATGTCTCGGTTTTGGAAGG+AGG + chr3.4:2735366-2735385 MS.gene51502:CDS 45.0%
!!! GCAAATGTCTCGGTTTTGGA+AGG + chr3.4:2735363-2735382 MS.gene51502:CDS 45.0%
AAAACGTCCGCGCTTGTAGT+AGG - chr3.4:2735336-2735355 None:intergenic 50.0%
AAGCACACCTACTACAAGCG+CGG + chr3.4:2735326-2735345 MS.gene51502:CDS 50.0%
ATGGCTGAGATGCATCCTTC+CGG - chr3.4:2733946-2733965 None:intergenic 50.0%
CGCCCTAGTATGAGAAGTGA+TGG + chr3.4:2735416-2735435 MS.gene51502:CDS 50.0%
CTCACCATTCATTGCGGTGA+TGG + chr3.4:2734432-2734451 MS.gene51502:CDS 50.0%
CTGCAGATTCCGACGTTGTT+TGG + chr3.4:2734031-2734050 MS.gene51502:CDS 50.0%
GGGAATCCAAAGGGAGAAAG+TGG - chr3.4:2734059-2734078 None:intergenic 50.0%
GTCACCATCACCGCAATGAA+TGG - chr3.4:2734439-2734458 None:intergenic 50.0%
GTTGTCGAGGAAATGGAGAC+TGG + chr3.4:2735506-2735525 MS.gene51502:CDS 50.0%
! AGCGAGATAGAGGGCCTTTT+TGG - chr3.4:2734133-2734152 None:intergenic 50.0%
! GAGATAGAGGGCCTTTTTGG+TGG - chr3.4:2734130-2734149 None:intergenic 50.0%
! GGTTGGTTGGAGATCGAGAT+GGG + chr3.4:2735437-2735456 MS.gene51502:CDS 50.0%
! TACAAGCGCGGACGTTTTAC+CGG + chr3.4:2735338-2735357 MS.gene51502:CDS 50.0%
! TGGTTGGTTGGAGATCGAGA+TGG + chr3.4:2735436-2735455 MS.gene51502:CDS 50.0%
CGTCGGAATCTGCAGCAGAA+AGG - chr3.4:2734026-2734045 None:intergenic 55.0%
GGGAGTCGTACGAGACAGAA+TGG - chr3.4:2733965-2733984 None:intergenic 55.0%
TGCCAACGCTCCCACCAAAA+AGG + chr3.4:2734116-2734135 MS.gene51502:CDS 55.0%
!! TTTGGTGGGAGCGTTGGCAA+GGG - chr3.4:2734115-2734134 None:intergenic 55.0%
!!! TTTTGGTGGGAGCGTTGGCA+AGG - chr3.4:2734116-2734135 None:intergenic 55.0%
!! GGCCTTTTTGGTGGGAGCGT+TGG - chr3.4:2734121-2734140 None:intergenic 60.0%
!! GTGGGAGCGTTGGCAAGGGA+AGG - chr3.4:2734111-2734130 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 2733919 2735589 2733919 ID=MS.gene51502
chr3.4 mRNA 2733919 2735589 2733919 ID=MS.gene51502.t1;Parent=MS.gene51502
chr3.4 exon 2733919 2734191 2733919 ID=MS.gene51502.t1.exon1;Parent=MS.gene51502.t1
chr3.4 CDS 2733919 2734191 2733919 ID=cds.MS.gene51502.t1;Parent=MS.gene51502.t1
chr3.4 exon 2734375 2734523 2734375 ID=MS.gene51502.t1.exon2;Parent=MS.gene51502.t1
chr3.4 CDS 2734375 2734523 2734375 ID=cds.MS.gene51502.t1;Parent=MS.gene51502.t1
chr3.4 exon 2735082 2735589 2735082 ID=MS.gene51502.t1.exon3;Parent=MS.gene51502.t1
chr3.4 CDS 2735082 2735589 2735082 ID=cds.MS.gene51502.t1;Parent=MS.gene51502.t1
Gene Sequence

>MS.gene51502

ATGGAGGCAGCTTTAGATGAATTTCCGGAAGGATGCATCTCAGCCATTCTGTCTCGTACGACTCCCGTTGATGTTTGCAGACTCTCCCTTGTTTCTAAGACTTTCCTTTCTGCTGCAGATTCCGACGTTGTTTGGAACCACTTTCTCCCTTTGGATTCCCGTCTCATTAACTCAATCATCTCACATTCTCCTTCCCTTGCCAACGCTCCCACCAAAAAGGCCCTCTATCTCGCTCTCTCTGATAGCCCAATCATCATCGATCATGGTCGAAAGGTATTCTTTTTCATAACGGTCAATTTCTCAAATATTAGAGTTTATTTTAGTAAAAATTAATTTTTAATCAATTGTTGTGCAAGAAACTATTGATTTTTGTAATCCCTAGTTTCTCTTTTATTAAGGCTTATTGATTTAAGATGTTTTCGGAATGCTAATAAGCCTTGAATATATGAAATTCAGAGCTTTAAATTGGATAGGAAAAGTGGAAAAATATGTTACATGCTTGCTGCTAGATCTCTCACCATTCATTGCGGTGATGGTGACAGTGATGATGATAGTGATGATGAACTACTCACTGATAAAGAGTGGATTCATATGAATGATTCCAGGTTAGTTTTTTTTTTTTTTTTCCATTGTGTTAATGATACTATTATTTCCTATTTCTAAACCTTTATGAATACTAAATTGGGTTAAATAAGTAAATGGTCCCTCAAAAATTTTTCATAGTCTAATGAATATTTATTTGCGTAGTGTGGAGTATTAACGATACAAATATTGTATTTTTGTTAAAATATTTTCCTTTGTCATGCTTCTAACTTTCTTCCAAAGAAAATTATAAGTGAATACTTCTGGCTAGACTATTCAAACCCAAAGTTAACTTACACATGAATCTAAAGCTTAATATTAGTGATGGGTCCCCTCTCTGATAATTCTCTTAATAGATAACAAACAATATAACTTATTAAAGCTTAATATTAGTGATGGGTCCCCTCACTGAGAAGTTTCTCAATACGCTTGGTTTACAACTTCCAAAATCCAAACTTTAGTTGATGAGTCTACATTGTTATCGTATCTACACTTGTATAATACCCCATATGTGATGGGTATGAATCACTTTCATCTTCTTTTCATAATCCTTGTATTCTTGTCTTTGCAATTATTTACAGGTTTCCTGAAGTCGCTAAGCTTTGTCTTGTGTTTTCGCTCGAAATTCGTGGAATAATTAACACTTTTTCCTTGTCCCAAAATACTCGGTATGCGGCTTATCTTGTGTTCAAGATGATTGATGACTATGGATTTGAGAATGAACCTATGAACCTATCAATTGATGTAGAAGGTGGCCATAGCAGCACTAAATCTGTATGCTTGGATCCCAAAGCTTCACGCAACAAAGCAATAACGTGCTCAAGGAAGCACACCTACTACAAGCGCGGACGTTTTACCGGTTGCAAATGTCTCGGTTTTGGAAGGAGGCTGTACCCGAATGTAATAGGATTGCAGCGCCCTAGTATGAGAAGTGATGGTTGGTTGGAGATCGAGATGGGAGTGTTCTTCAATTCAAGCCTTGAAGGAGAAGAAGTCCAAATGAGTGTTGTCGAGGAAATGGAGACTGGCAAGATGAAGGGAAATATCTTTCTTGAAGGAATAGAAGTTAGGCCTAAGAAGGAAAATTAA
Protein sequence

>MS.gene51502.t1

MEAALDEFPEGCISAILSRTTPVDVCRLSLVSKTFLSAADSDVVWNHFLPLDSRLINSIISHSPSLANAPTKKALYLALSDSPIIIDHGRKSFKLDRKSGKICYMLAARSLTIHCGDGDSDDDSDDELLTDKEWIHMNDSRFPEVAKLCLVFSLEIRGIINTFSLSQNTRYAAYLVFKMIDDYGFENEPMNLSIDVEGGHSSTKSVCLDPKASRNKAITCSRKHTYYKRGRFTGCKCLGFGRRLYPNVIGLQRPSMRSDGWLEIEMGVFFNSSLEGEEVQMSVVEEMETGKMKGNIFLEGIEVRPKKEN