AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51496

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51496.t1 MTR_3g006850 87.227 321 38 1 1 321 1 318 0.0 539
MS.gene51496.t1 MTR_1g100597 62.418 306 82 7 16 321 3 275 3.60e-122 352
MS.gene51496.t1 MTR_1g079180 60.596 302 79 6 17 318 4 265 6.86e-116 335
MS.gene51496.t1 MTR_1g079370 58.278 302 86 5 17 318 4 265 1.21e-114 332
MS.gene51496.t1 MTR_1g079230 59.344 305 92 6 17 321 4 276 1.54e-113 330
MS.gene51496.t1 MTR_1g079260 58.252 309 92 7 15 321 2 275 9.41e-113 328
MS.gene51496.t1 MTR_1g079460 57.705 305 90 3 17 321 4 269 3.43e-110 321
MS.gene51496.t1 MTR_1g079850 57.605 309 103 5 15 321 2 284 8.19e-110 321
MS.gene51496.t1 MTR_3g452600 55.911 313 93 5 9 321 3 270 3.83e-108 316
MS.gene51496.t1 MTR_1g079200 58.224 304 82 6 17 318 4 264 5.34e-106 310
MS.gene51496.t1 MTR_1g100613 61.132 265 75 6 33 297 5 241 5.93e-100 294
MS.gene51496.t1 MTR_1g079380 56.291 302 92 5 17 318 4 265 6.70e-98 291
MS.gene51496.t1 MTR_1g026510 52.564 312 116 5 15 321 2 286 1.05e-96 288
MS.gene51496.t1 MTR_1g079250 54.516 310 108 6 15 321 2 281 5.05e-96 286
MS.gene51496.t1 MTR_3g450990 50.151 331 100 8 9 321 3 286 5.84e-93 278
MS.gene51496.t1 MTR_2g079100 52.077 313 96 7 5 315 1 261 2.81e-91 273
MS.gene51496.t1 MTR_1g079350 48.562 313 113 7 15 318 2 275 1.23e-84 256
MS.gene51496.t1 MTR_1g079410 46.474 312 119 7 14 319 5 274 7.19e-78 239
MS.gene51496.t1 MTR_7g096300 50.847 295 95 8 15 305 2 250 6.96e-75 244
MS.gene51496.t1 MTR_1g079340 46.440 323 127 9 9 318 36 325 8.00e-75 233
MS.gene51496.t1 MTR_1g079140 42.547 322 143 10 17 321 13 309 8.22e-66 209
MS.gene51496.t1 MTR_1g076870 66.225 151 33 3 154 300 2 138 8.06e-60 188
MS.gene51496.t1 MTR_1g079400 40.062 322 135 8 9 318 4 279 1.47e-58 190
MS.gene51496.t1 MTR_7g112550 42.718 309 132 13 20 318 10 283 5.73e-54 178
MS.gene51496.t1 MTR_1g078470 47.222 216 66 5 106 318 14 184 1.54e-49 163
MS.gene51496.t1 MTR_1g083580 35.526 304 164 8 17 318 8 281 5.29e-47 160
MS.gene51496.t1 MTR_1g079350 57.516 153 49 3 15 163 2 142 3.89e-46 155
MS.gene51496.t1 MTR_7g112560 34.000 300 151 8 20 318 4 257 4.51e-44 152
MS.gene51496.t1 MTR_1g079240 43.363 226 77 7 96 318 2 179 2.17e-42 145
MS.gene51496.t1 MTR_4g023570 32.667 300 135 7 20 318 4 237 3.60e-37 133
MS.gene51496.t1 MTR_7g096310 54.225 142 47 3 73 212 38 163 2.19e-36 129
MS.gene51496.t1 MTR_2g042540 64.762 105 34 2 16 119 3 105 7.41e-36 126
MS.gene51496.t1 MTR_1g079210 51.825 137 52 2 155 291 7 129 4.00e-34 122
MS.gene51496.t1 MTR_1g078460 65.591 93 28 2 11 103 62 150 5.78e-32 117
MS.gene51496.t1 MTR_1g079130 37.850 214 102 6 117 321 1 192 1.33e-30 114
MS.gene51496.t1 MTR_3g058640 50.000 128 36 2 154 281 7 106 4.79e-30 110
MS.gene51496.t1 MTR_0113s0040 28.169 213 129 5 14 214 19 219 2.69e-18 84.0
MS.gene51496.t1 MTR_7g103380 24.887 221 142 7 13 221 15 223 5.88e-16 77.4
MS.gene51496.t1 MTR_1g079220 43.617 94 25 2 191 284 1 66 2.17e-15 70.5
MS.gene51496.t1 MTR_0002s0020 25.551 227 138 7 13 221 18 231 2.77e-14 72.4
MS.gene51496.t1 MTR_5g010800 28.902 173 111 4 1 173 1 161 4.82e-14 71.6
MS.gene51496.t1 MTR_1g101390 31.013 158 93 5 15 170 26 169 5.43e-14 71.6
MS.gene51496.t1 MTR_4g102770 31.169 154 91 4 19 170 21 161 9.99e-14 70.9
MS.gene51496.t1 MTR_1g079390 64.706 51 15 2 263 313 8 55 1.20e-12 62.4
MS.gene51496.t1 MTR_1g050352 54.930 71 26 2 39 107 46 112 5.70e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51496.t1 AT2G02360 37.107 318 145 10 8 319 2 270 5.83e-56 183
MS.gene51496.t1 AT1G80110 37.542 301 140 7 18 317 2 255 3.73e-50 167
MS.gene51496.t1 AT2G02230 33.333 330 170 10 17 321 32 336 2.41e-48 165
MS.gene51496.t1 AT1G56250 38.487 304 156 9 20 318 4 281 1.76e-46 159
MS.gene51496.t1 AT2G02340 34.084 311 154 10 15 317 34 301 9.38e-46 157
MS.gene51496.t1 AT1G09155 36.977 311 151 10 20 318 3 280 1.55e-45 156
MS.gene51496.t1 AT2G02240 34.951 309 152 9 15 321 59 320 3.09e-45 156
MS.gene51496.t1 AT2G02350 32.808 317 165 9 6 319 13 284 6.13e-45 155
MS.gene51496.t1 AT1G56240 36.634 303 161 9 20 317 4 280 1.63e-44 154
MS.gene51496.t1 AT2G02250 34.853 307 148 10 17 319 47 305 3.89e-44 153
MS.gene51496.t1 AT2G02310 32.248 307 160 9 15 318 43 304 2.01e-40 144
MS.gene51496.t1 AT2G02320 31.392 309 162 10 16 320 39 301 1.23e-34 128
MS.gene51496.t1 AT2G02300 30.449 312 147 9 15 318 32 281 3.25e-32 121
MS.gene51496.t1 AT5G24560 37.000 200 98 7 17 212 3 178 8.69e-31 115
MS.gene51496.t1 AT3G53000 24.797 246 157 7 13 244 17 248 3.46e-16 78.2
MS.gene51496.t1 AT3G61060 28.571 154 94 5 19 170 27 166 6.63e-15 74.3
MS.gene51496.t1 AT3G61060 26.623 154 98 4 19 170 27 167 5.69e-14 71.6
MS.gene51496.t1 AT1G63090 25.301 249 143 11 13 245 22 243 1.34e-13 70.5
MS.gene51496.t1 AT1G12710 24.123 228 142 8 13 225 24 235 9.32e-13 68.2
MS.gene51496.t1 AT5G52120 28.659 164 97 6 16 172 20 170 7.73e-11 62.4

Find 72 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCCGCATACCGAGTATTT+TGG 0.178783 3.4:-2609028 None:intergenic
TGAAATTCAGAGCTTTAAAT+TGG 0.211874 3.4:+2608236 MS.gene51496:intron
CTGCAGATTCCGACGTTGTT+TGG 0.234578 3.4:+2607902 MS.gene51496:CDS
GGTTGCAAATGTCTCGGTTT+TGG 0.308941 3.4:+2609230 MS.gene51496:CDS
TGCCAACGCTCCCACCAAAA+AGG 0.326568 3.4:+2607987 MS.gene51496:CDS
CAACCATCACTTCTCATACT+AGG 0.328537 3.4:-2609290 None:intergenic
TTGGAACCACTTTCTCCCTT+TGG 0.330062 3.4:+2607921 MS.gene51496:CDS
TTTGGACTTCTTCTCCTTCA+AGG 0.330762 3.4:-2609349 None:intergenic
CGCTGCAATCCTATTACATT+CGG 0.339333 3.4:-2609266 None:intergenic
TTTCCTCGACAACACTCATT+TGG 0.340801 3.4:-2609367 None:intergenic
ACATCAATTGATAGGTTCAT+AGG 0.348387 3.4:-2609095 None:intergenic
CGACCATGATCGATGATGAT+TGG 0.368659 3.4:-2608036 None:intergenic
AGGCTGTACCCGAATGTAAT+AGG 0.371608 3.4:+2609257 MS.gene51496:CDS
TTCTTCAATTCAAGCCTTGA+AGG 0.372375 3.4:+2609335 MS.gene51496:CDS
TGACAAAGCTTAGCGACTTC+AGG 0.392944 3.4:-2608957 None:intergenic
TTCAAGATGATTGATGACTA+TGG 0.395723 3.4:+2609059 MS.gene51496:CDS
AATGAGTGTTGTCGAGGAAA+TGG 0.401258 3.4:+2609370 MS.gene51496:CDS
TTCTTGAAGGAATAGAAGTT+AGG 0.408541 3.4:+2609420 MS.gene51496:CDS
CACCTTCTACATCAATTGAT+AGG 0.413511 3.4:-2609103 None:intergenic
GAGAGTCTGCAAACATCAAC+TGG 0.417890 3.4:-2607853 None:intergenic
AAGGGAAATATCTTTCTTGA+AGG 0.431692 3.4:+2609407 MS.gene51496:CDS
GACCATGATCGATGATGATT+GGG 0.433866 3.4:-2608035 None:intergenic
GTGTTCTCGCTTGAAATTCG+TGG 0.440386 3.4:+2608981 MS.gene51496:CDS
AACCTATCAATTGATGTAGA+AGG 0.444640 3.4:+2609101 MS.gene51496:CDS
ATGGCTGAGATGCATCCTTC+CGG 0.445419 3.4:-2607814 None:intergenic
AAAACGTCCGCGCTTGTAGT+AGG 0.460918 3.4:-2609204 None:intergenic
TTTAAATTGGATAGGAAAAG+TGG 0.463958 3.4:+2608249 MS.gene51496:CDS
TATCAGAGAGAGCGAGATAG+AGG 0.472204 3.4:-2608011 None:intergenic
CAGCACTAAATCCGTATGCT+TGG 0.491091 3.4:+2609133 MS.gene51496:CDS
AACCATCACTTCTCATACTA+GGG 0.492010 3.4:-2609289 None:intergenic
GATGATTGAGTTAATGAGAC+GGG 0.495408 3.4:-2607947 None:intergenic
CTCACCATTCATTGCGGTGA+TGG 0.501864 3.4:+2608303 MS.gene51496:CDS
AATGGAGACTGGCAAGATGA+AGG 0.507648 3.4:+2609388 MS.gene51496:CDS
AATAGAAGTTAGGCCTAAGA+AGG 0.511840 3.4:+2609430 MS.gene51496:CDS
GTCACCATCACCGCAATGAA+TGG 0.517575 3.4:-2608307 None:intergenic
AGCCCAATCATCATCGATCA+TGG 0.522783 3.4:+2608033 MS.gene51496:CDS
TATGAGAAGTGATGGTTGGT+TGG 0.523435 3.4:+2609295 MS.gene51496:CDS
ATACGGATTTAGTGCTGCTA+TGG 0.527168 3.4:-2609127 None:intergenic
GTGGGAGCGTTGGCAAGGGA+AGG 0.528441 3.4:-2607979 None:intergenic
GCTGCAATCCTATTACATTC+GGG 0.532318 3.4:-2609265 None:intergenic
CGCCCTAGTATGAGAAGTGA+TGG 0.533372 3.4:+2609287 MS.gene51496:CDS
AAAACCGAGACATTTGCAAC+CGG 0.536006 3.4:-2609228 None:intergenic
GGTTGGTTGGAGATTGAGAT+GGG 0.536181 3.4:+2609308 MS.gene51496:CDS
ATGGAGACTGGCAAGATGAA+GGG 0.545643 3.4:+2609389 MS.gene51496:CDS
TTCAGAGCTTTAAATTGGAT+AGG 0.554237 3.4:+2608241 MS.gene51496:intron
CGTCGGAATCTGCAGCAGAA+AGG 0.560540 3.4:-2607894 None:intergenic
TGGTTGGTTGGAGATTGAGA+TGG 0.562991 3.4:+2609307 MS.gene51496:CDS
TTTCCTTGTCCCAAAATACT+CGG 0.564789 3.4:+2609018 MS.gene51496:CDS
GGGAATCCAAAGGGAGAAAG+TGG 0.566909 3.4:-2607927 None:intergenic
TGGAGTCGTACGAGACAGAA+TGG 0.571044 3.4:-2607833 None:intergenic
AAATCAAAAGAATGGCAAGA+AGG 0.571800 3.4:+2607743 None:intergenic
GTTGTCGAGGAAATGGAGAC+TGG 0.585226 3.4:+2609377 MS.gene51496:CDS
AAGGAAAGTCTTAGAAACAA+GGG 0.585673 3.4:-2607875 None:intergenic
TTTACCGGTTGCAAATGTCT+CGG 0.586991 3.4:+2609224 MS.gene51496:CDS
AAAGGAAAGTCTTAGAAACA+AGG 0.587344 3.4:-2607876 None:intergenic
AGCTTTGGGATCCAAGCATA+CGG 0.589751 3.4:-2609144 None:intergenic
TAATGAGACGGGAATCCAAA+GGG 0.591503 3.4:-2607936 None:intergenic
GGATTCATATGAATGAGTCC+AGG 0.591606 3.4:+2608373 MS.gene51496:CDS
TTTGGTGGGAGCGTTGGCAA+GGG 0.595797 3.4:-2607983 None:intergenic
CATCATCGATCATGGTCGAA+AGG 0.598086 3.4:+2608041 MS.gene51496:CDS
AACTACTCACTGATAAAGAG+TGG 0.609965 3.4:+2608352 MS.gene51496:CDS
ATCAGAGAGAGCGAGATAGA+GGG 0.619326 3.4:-2608010 None:intergenic
GTCCCAAAATACTCGGTATG+CGG 0.633068 3.4:+2609025 MS.gene51496:CDS
AGTCCAAATGAGTGTTGTCG+AGG 0.638213 3.4:+2609364 MS.gene51496:CDS
CTAGTATGAGAAGTGATGGT+TGG 0.640337 3.4:+2609291 MS.gene51496:CDS
CTATCAATTGATGTAGAAGG+TGG 0.650147 3.4:+2609104 MS.gene51496:CDS
TTAATGAGACGGGAATCCAA+AGG 0.670447 3.4:-2607937 None:intergenic
AGATGATTGAGTTAATGAGA+CGG 0.677551 3.4:-2607948 None:intergenic
AAGCACTCCTACTACAAGCG+CGG 0.698970 3.4:+2609197 MS.gene51496:CDS
AGATCTCTCACCATTCATTG+CGG 0.710070 3.4:+2608297 MS.gene51496:CDS
AAAGTGGTTCCAAACAACGT+CGG 0.722695 3.4:-2607911 None:intergenic
AATGGCAAGAAGGATAACAA+CGG 0.725886 3.4:+2607753 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTACTTATAATTTTCTT+TGG - chr3.4:2608612-2608631 None:intergenic 10.0%
!! AAAAAAAAAAAAAACTAACC+TGG - chr3.4:2608394-2608413 None:intergenic 15.0%
!! AAATTATAAGTAAATACTTC+TGG + chr3.4:2608616-2608635 MS.gene51496:intron 15.0%
!!! TTATTGATTTAAGATGTTTT+CGG + chr3.4:2608190-2608209 MS.gene51496:intron 15.0%
!! AATTGGGTTAAATAAGTAAA+TGG + chr3.4:2608469-2608488 MS.gene51496:intron 20.0%
!! TAAAGCTTAATATTAGTGAT+GGG + chr3.4:2608678-2608697 MS.gene51496:intron 20.0%
!! TAATAGTATCATTAACACAA+TGG - chr3.4:2608419-2608438 None:intergenic 20.0%
!! TTAAAGCTTAATATTAGTGA+TGG + chr3.4:2608748-2608767 MS.gene51496:intron 20.0%
!!! AAAGGTATTCTTTTTCATAA+CGG + chr3.4:2608059-2608078 MS.gene51496:intron 20.0%
!!! AGACTATGAAAATTTTTTGA+GGG - chr3.4:2608496-2608515 None:intergenic 20.0%
!!! TAGACTATGAAAATTTTTTG+AGG - chr3.4:2608497-2608516 None:intergenic 20.0%
! AACCTTTATGGATACTAAAT+TGG + chr3.4:2608452-2608471 MS.gene51496:intron 25.0%
! ACCTTTATGGATACTAAATT+GGG + chr3.4:2608453-2608472 MS.gene51496:intron 25.0%
! ATCCATAAAGGTTTAGAAAT+AGG - chr3.4:2608445-2608464 None:intergenic 25.0%
! ATTAAGAGAATTATCAGAGA+GGG - chr3.4:2608706-2608725 None:intergenic 25.0%
! ATTCATGTGTAAGTTAACTT+TGG - chr3.4:2608657-2608676 None:intergenic 25.0%
! CCTTAATAAAAGAGAAACTA+GGG - chr3.4:2608169-2608188 None:intergenic 25.0%
! CTAAAGCTTAATATTAGTGA+TGG + chr3.4:2608677-2608696 MS.gene51496:intron 25.0%
! CTCTGAATTTCATATATTCA+AGG - chr3.4:2608228-2608247 None:intergenic 25.0%
! TATTAAGAGAATTATCAGAG+AGG - chr3.4:2608707-2608726 None:intergenic 25.0%
! TTCATGTGTAAGTTAACTTT+GGG - chr3.4:2608656-2608675 None:intergenic 25.0%
! TTGTCTTTGCATTTATTTAC+AGG + chr3.4:2608931-2608950 MS.gene51496:intron 25.0%
! TTTAAATTGGATAGGAAAAG+TGG + chr3.4:2608249-2608268 MS.gene51496:CDS 25.0%
!! ATCAACTAAAGTTTGGATTT+TGG - chr3.4:2608818-2608837 None:intergenic 25.0%
!!! TGAAATTCAGAGCTTTAAAT+TGG + chr3.4:2608236-2608255 MS.gene51496:intron 25.0%
!!! TTCCTATTTCTAAACCTTTA+TGG + chr3.4:2608440-2608459 MS.gene51496:intron 25.0%
AAAGGAAAGTCTTAGAAACA+AGG - chr3.4:2607879-2607898 None:intergenic 30.0%
AACCTATCAATTGATGTAGA+AGG + chr3.4:2609101-2609120 MS.gene51496:CDS 30.0%
AAGGAAAGTCTTAGAAACAA+GGG - chr3.4:2607878-2607897 None:intergenic 30.0%
AAGGGAAATATCTTTCTTGA+AGG + chr3.4:2609407-2609426 MS.gene51496:CDS 30.0%
AATGCAAAGACAAGAATACA+AGG - chr3.4:2608924-2608943 None:intergenic 30.0%
ACATCAATTGATAGGTTCAT+AGG - chr3.4:2609098-2609117 None:intergenic 30.0%
ACCCAATTTAGTATCCATAA+AGG - chr3.4:2608457-2608476 None:intergenic 30.0%
AGATGATTGAGTTAATGAGA+CGG - chr3.4:2607951-2607970 None:intergenic 30.0%
GAATATTTATTTGCGTAGTG+TGG + chr3.4:2608519-2608538 MS.gene51496:intron 30.0%
GCCTTAATAAAAGAGAAACT+AGG - chr3.4:2608170-2608189 None:intergenic 30.0%
TATAATACCCCATATGTGAT+GGG + chr3.4:2608868-2608887 MS.gene51496:intron 30.0%
TGTAGATACGATAACAATGT+AGG - chr3.4:2608844-2608863 None:intergenic 30.0%
TTAAGAGAATTATCAGAGAG+GGG - chr3.4:2608705-2608724 None:intergenic 30.0%
TTCTTGAAGGAATAGAAGTT+AGG + chr3.4:2609420-2609439 MS.gene51496:CDS 30.0%
! CCCTAGTTTCTCTTTTATTA+AGG + chr3.4:2608166-2608185 MS.gene51496:intron 30.0%
! TTCAAGATGATTGATGACTA+TGG + chr3.4:2609059-2609078 MS.gene51496:CDS 30.0%
!! TTCAGAGCTTTAAATTGGAT+AGG + chr3.4:2608241-2608260 MS.gene51496:intron 30.0%
AAAAAGCAATAACGTGCTCA+AGG + chr3.4:2609174-2609193 MS.gene51496:CDS 35.0%
AACCATCACTTCTCATACTA+GGG - chr3.4:2609292-2609311 None:intergenic 35.0%
AACTACTCACTGATAAAGAG+TGG + chr3.4:2608352-2608371 MS.gene51496:CDS 35.0%
AATAGAAGTTAGGCCTAAGA+AGG + chr3.4:2609430-2609449 MS.gene51496:CDS 35.0%
ATTCATACCCATCACATATG+GGG - chr3.4:2608878-2608897 None:intergenic 35.0%
ATTGAGAAACTTCTCAGTGA+GGG - chr3.4:2608777-2608796 None:intergenic 35.0%
CACCTTCTACATCAATTGAT+AGG - chr3.4:2609106-2609125 None:intergenic 35.0%
CTATCAATTGATGTAGAAGG+TGG + chr3.4:2609104-2609123 MS.gene51496:CDS 35.0%
GATGATTGAGTTAATGAGAC+GGG - chr3.4:2607950-2607969 None:intergenic 35.0%
GATTCATACCCATCACATAT+GGG - chr3.4:2608879-2608898 None:intergenic 35.0%
GTATAATACCCCATATGTGA+TGG + chr3.4:2608867-2608886 MS.gene51496:intron 35.0%
TAGGCTCATCAACTAAAGTT+TGG - chr3.4:2608825-2608844 None:intergenic 35.0%
TATTGAGAAACTTCTCAGTG+AGG - chr3.4:2608778-2608797 None:intergenic 35.0%
TGATTCATACCCATCACATA+TGG - chr3.4:2608880-2608899 None:intergenic 35.0%
TTCTTCAATTCAAGCCTTGA+AGG + chr3.4:2609335-2609354 MS.gene51496:CDS 35.0%
TTTCCTTGTCCCAAAATACT+CGG + chr3.4:2609018-2609037 MS.gene51496:CDS 35.0%
! GAAAGTTAGAAGCATGACAT+AGG - chr3.4:2608587-2608606 None:intergenic 35.0%
AAAACCGAGACATTTGCAAC+CGG - chr3.4:2609231-2609250 None:intergenic 40.0%
AAAGTGGTTCCAAACAACGT+CGG - chr3.4:2607914-2607933 None:intergenic 40.0%
AACGGCAAAAAGCAGAAGAA+TGG + chr3.4:2607771-2607790 MS.gene51496:CDS 40.0%
AGATCTCTCACCATTCATTG+CGG + chr3.4:2608297-2608316 MS.gene51496:CDS 40.0%
CAACCATCACTTCTCATACT+AGG - chr3.4:2609293-2609312 None:intergenic 40.0%
CGCTGCAATCCTATTACATT+CGG - chr3.4:2609269-2609288 None:intergenic 40.0%
CTAGTATGAGAAGTGATGGT+TGG + chr3.4:2609291-2609310 MS.gene51496:CDS 40.0%
GACCATGATCGATGATGATT+GGG - chr3.4:2608038-2608057 None:intergenic 40.0%
GAGAAGTTTCTCAATACGCT+TGG + chr3.4:2608782-2608801 MS.gene51496:intron 40.0%
GCTGCAATCCTATTACATTC+GGG - chr3.4:2609268-2609287 None:intergenic 40.0%
GGATTCATATGAATGAGTCC+AGG + chr3.4:2608373-2608392 MS.gene51496:CDS 40.0%
TAATGAGACGGGAATCCAAA+GGG - chr3.4:2607939-2607958 None:intergenic 40.0%
TATGAGAAGTGATGGTTGGT+TGG + chr3.4:2609295-2609314 MS.gene51496:CDS 40.0%
TTAATGAGACGGGAATCCAA+AGG - chr3.4:2607940-2607959 None:intergenic 40.0%
TTGAGAAACTTCTCAGTGAG+GGG - chr3.4:2608776-2608795 None:intergenic 40.0%
TTTCCTCGACAACACTCATT+TGG - chr3.4:2609370-2609389 None:intergenic 40.0%
TTTGGACTTCTTCTCCTTCA+AGG - chr3.4:2609352-2609371 None:intergenic 40.0%
! AATGAGTGTTGTCGAGGAAA+TGG + chr3.4:2609370-2609389 MS.gene51496:CDS 40.0%
! ATACGGATTTAGTGCTGCTA+TGG - chr3.4:2609130-2609149 None:intergenic 40.0%
! GCTTTTGATGAATTTCCGGA+AGG + chr3.4:2607799-2607818 MS.gene51496:CDS 40.0%
! GGCAGCTTTTGATGAATTTC+CGG + chr3.4:2607795-2607814 MS.gene51496:CDS 40.0%
! TTTACCGGTTGCAAATGTCT+CGG + chr3.4:2609224-2609243 MS.gene51496:CDS 40.0%
!!! ATACCGAGTATTTTGGGACA+AGG - chr3.4:2609024-2609043 None:intergenic 40.0%
!!! GCTTTTTTGCGTGAAGCTTT+GGG - chr3.4:2609161-2609180 None:intergenic 40.0%
!!! TGCTTTTTTGCGTGAAGCTT+TGG - chr3.4:2609162-2609181 None:intergenic 40.0%
AATGGAGACTGGCAAGATGA+AGG + chr3.4:2609388-2609407 MS.gene51496:CDS 45.0%
AGCCCAATCATCATCGATCA+TGG + chr3.4:2608033-2608052 MS.gene51496:CDS 45.0%
AGGCTGTACCCGAATGTAAT+AGG + chr3.4:2609257-2609276 MS.gene51496:CDS 45.0%
ATCAGAGAGAGCGAGATAGA+GGG - chr3.4:2608013-2608032 None:intergenic 45.0%
ATGGAGACTGGCAAGATGAA+GGG + chr3.4:2609389-2609408 MS.gene51496:CDS 45.0%
CAGCACTAAATCCGTATGCT+TGG + chr3.4:2609133-2609152 MS.gene51496:CDS 45.0%
CATCATCGATCATGGTCGAA+AGG + chr3.4:2608041-2608060 MS.gene51496:CDS 45.0%
CGACCATGATCGATGATGAT+TGG - chr3.4:2608039-2608058 None:intergenic 45.0%
GAGAGTCTGCAAACATCAAC+TGG - chr3.4:2607856-2607875 None:intergenic 45.0%
GGCAAAAAGCAGAAGAATGG+AGG + chr3.4:2607774-2607793 MS.gene51496:CDS 45.0%
GTCCCAAAATACTCGGTATG+CGG + chr3.4:2609025-2609044 MS.gene51496:CDS 45.0%
GTGTTCTCGCTTGAAATTCG+TGG + chr3.4:2608981-2609000 MS.gene51496:CDS 45.0%
TATCAGAGAGAGCGAGATAG+AGG - chr3.4:2608014-2608033 None:intergenic 45.0%
TGACAAAGCTTAGCGACTTC+AGG - chr3.4:2608960-2608979 None:intergenic 45.0%
TTGGAACCACTTTCTCCCTT+TGG + chr3.4:2607921-2607940 MS.gene51496:CDS 45.0%
! AAGCCGCATACCGAGTATTT+TGG - chr3.4:2609031-2609050 None:intergenic 45.0%
! AGCCGCATACCGAGTATTTT+GGG - chr3.4:2609030-2609049 None:intergenic 45.0%
! AGTCCAAATGAGTGTTGTCG+AGG + chr3.4:2609364-2609383 MS.gene51496:CDS 45.0%
! GGTTGCAAATGTCTCGGTTT+TGG + chr3.4:2609230-2609249 MS.gene51496:CDS 45.0%
! GGTTGGTTGGAGATTGAGAT+GGG + chr3.4:2609308-2609327 MS.gene51496:CDS 45.0%
! TGGTTGGTTGGAGATTGAGA+TGG + chr3.4:2609307-2609326 MS.gene51496:CDS 45.0%
!! AGATAGAGGGCCTTTTTGGT+GGG - chr3.4:2608000-2608019 None:intergenic 45.0%
!! AGCTTTGGGATCCAAGCATA+CGG - chr3.4:2609147-2609166 None:intergenic 45.0%
!!! AATGTCTCGGTTTTGGAAGG+AGG + chr3.4:2609237-2609256 MS.gene51496:CDS 45.0%
!!! GCAAATGTCTCGGTTTTGGA+AGG + chr3.4:2609234-2609253 MS.gene51496:CDS 45.0%
AAAACGTCCGCGCTTGTAGT+AGG - chr3.4:2609207-2609226 None:intergenic 50.0%
AAGCACTCCTACTACAAGCG+CGG + chr3.4:2609197-2609216 MS.gene51496:CDS 50.0%
ATGGCTGAGATGCATCCTTC+CGG - chr3.4:2607817-2607836 None:intergenic 50.0%
CGCCCTAGTATGAGAAGTGA+TGG + chr3.4:2609287-2609306 MS.gene51496:CDS 50.0%
CTCACCATTCATTGCGGTGA+TGG + chr3.4:2608303-2608322 MS.gene51496:CDS 50.0%
CTGCAGATTCCGACGTTGTT+TGG + chr3.4:2607902-2607921 MS.gene51496:CDS 50.0%
GGGAATCCAAAGGGAGAAAG+TGG - chr3.4:2607930-2607949 None:intergenic 50.0%
GTCACCATCACCGCAATGAA+TGG - chr3.4:2608310-2608329 None:intergenic 50.0%
GTTGTCGAGGAAATGGAGAC+TGG + chr3.4:2609377-2609396 MS.gene51496:CDS 50.0%
TGGAGTCGTACGAGACAGAA+TGG - chr3.4:2607836-2607855 None:intergenic 50.0%
! AGCGAGATAGAGGGCCTTTT+TGG - chr3.4:2608004-2608023 None:intergenic 50.0%
! GAGATAGAGGGCCTTTTTGG+TGG - chr3.4:2608001-2608020 None:intergenic 50.0%
! TACAAGCGCGGACGTTTTAC+CGG + chr3.4:2609209-2609228 MS.gene51496:CDS 50.0%
CGTCGGAATCTGCAGCAGAA+AGG - chr3.4:2607897-2607916 None:intergenic 55.0%
TGCCAACGCTCCCACCAAAA+AGG + chr3.4:2607987-2608006 MS.gene51496:CDS 55.0%
!! TTTGGTGGGAGCGTTGGCAA+GGG - chr3.4:2607986-2608005 None:intergenic 55.0%
!!! TTTTGGTGGGAGCGTTGGCA+AGG - chr3.4:2607987-2608006 None:intergenic 55.0%
!! GGCCTTTTTGGTGGGAGCGT+TGG - chr3.4:2607992-2608011 None:intergenic 60.0%
!! GTGGGAGCGTTGGCAAGGGA+AGG - chr3.4:2607982-2608001 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 2607754 2609460 2607754 ID=MS.gene51496
chr3.4 mRNA 2607754 2609460 2607754 ID=MS.gene51496.t1;Parent=MS.gene51496
chr3.4 exon 2607754 2608062 2607754 ID=MS.gene51496.t1.exon1;Parent=MS.gene51496.t1
chr3.4 CDS 2607754 2608062 2607754 ID=cds.MS.gene51496.t1;Parent=MS.gene51496.t1
chr3.4 exon 2608246 2608394 2608246 ID=MS.gene51496.t1.exon2;Parent=MS.gene51496.t1
chr3.4 CDS 2608246 2608394 2608246 ID=cds.MS.gene51496.t1;Parent=MS.gene51496.t1
chr3.4 exon 2608953 2609460 2608953 ID=MS.gene51496.t1.exon3;Parent=MS.gene51496.t1
chr3.4 CDS 2608953 2609460 2608953 ID=cds.MS.gene51496.t1;Parent=MS.gene51496.t1
Gene Sequence

>MS.gene51496

ATGGCAAGAAGGATAACAACGGCAAAAAGCAGAAGAATGGAGGCAGCTTTTGATGAATTTCCGGAAGGATGCATCTCAGCCATTCTGTCTCGTACGACTCCAGTTGATGTTTGCAGACTCTCCCTTGTTTCTAAGACTTTCCTTTCTGCTGCAGATTCCGACGTTGTTTGGAACCACTTTCTCCCTTTGGATTCCCGTCTCATTAACTCAATCATCTCACATTCTCCTTCCCTTGCCAACGCTCCCACCAAAAAGGCCCTCTATCTCGCTCTCTCTGATAGCCCAATCATCATCGATCATGGTCGAAAGGTATTCTTTTTCATAACGGTCAATTTCTCAAATATTAGAGTTTATTTTAGTAAAAATTAATTTTTATTCAATTGTTGTGCAAGAAACTATTGATTTTTGTAATCCCTAGTTTCTCTTTTATTAAGGCTTATTGATTTAAGATGTTTTCGGAATGCTAATAAGCCTTGAATATATGAAATTCAGAGCTTTAAATTGGATAGGAAAAGTGGAAAAATATGTTACATGCTTGCTGCTAGATCTCTCACCATTCATTGCGGTGATGGTGACAGTGATGATGATAGTGATGATGAACTACTCACTGATAAAGAGTGGATTCATATGAATGAGTCCAGGTTAGTTTTTTTTTTTTTTTTCCATTGTGTTAATGATACTATTATTTCCTATTTCTAAACCTTTATGGATACTAAATTGGGTTAAATAAGTAAATGGTCCCTCAAAAAATTTTCATAGTCTAATGAATATTTATTTGCGTAGTGTGGAGTATTAACGATACATATATTGTATTTTTGTTAAAATATTTTCCTATGTCATGCTTCTAACTTTCTTCCAAAGAAAATTATAAGTAAATACTTCTGGCTAGACTATTCAAACCCAAAGTTAACTTACACATGAATCTAAAGCTTAATATTAGTGATGGGTCCCCTCTCTGATAATTCTCTTAATAGATAACAAACAATATAACTTATTAAAGCTTAATATTAGTGATGGGTCCCCTCACTGAGAAGTTTCTCAATACGCTTGGTTTACAACTTCCAAAATCCAAACTTTAGTTGATGAGCCTACATTGTTATCGTATCTACACTTGTATAATACCCCATATGTGATGGGTATGAATCACTTTCATCTTCTTTTCATAATCCTTGTATTCTTGTCTTTGCATTTATTTACAGGTTTCCTGAAGTCGCTAAGCTTTGTCATGTGTTCTCGCTTGAAATTCGTGGAATAATTAACACTTTTTCCTTGTCCCAAAATACTCGGTATGCGGCTTATCTTGTGTTCAAGATGATTGATGACTATGGATTTGAGAATGAACCTATGAACCTATCAATTGATGTAGAAGGTGGCCATAGCAGCACTAAATCCGTATGCTTGGATCCCAAAGCTTCACGCAAAAAAGCAATAACGTGCTCAAGGAAGCACTCCTACTACAAGCGCGGACGTTTTACCGGTTGCAAATGTCTCGGTTTTGGAAGGAGGCTGTACCCGAATGTAATAGGATTGCAGCGCCCTAGTATGAGAAGTGATGGTTGGTTGGAGATTGAGATGGGAGTGTTCTTCAATTCAAGCCTTGAAGGAGAAGAAGTCCAAATGAGTGTTGTCGAGGAAATGGAGACTGGCAAGATGAAGGGAAATATCTTTCTTGAAGGAATAGAAGTTAGGCCTAAGAAGGAAAATTAA
Protein sequence

>MS.gene51496.t1

MARRITTAKSRRMEAAFDEFPEGCISAILSRTTPVDVCRLSLVSKTFLSAADSDVVWNHFLPLDSRLINSIISHSPSLANAPTKKALYLALSDSPIIIDHGRKSFKLDRKSGKICYMLAARSLTIHCGDGDSDDDSDDELLTDKEWIHMNESRFPEVAKLCHVFSLEIRGIINTFSLSQNTRYAAYLVFKMIDDYGFENEPMNLSIDVEGGHSSTKSVCLDPKASRKKAITCSRKHSYYKRGRFTGCKCLGFGRRLYPNVIGLQRPSMRSDGWLEIEMGVFFNSSLEGEEVQMSVVEEMETGKMKGNIFLEGIEVRPKKEN