AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34490.t1 MTR_1g100597 93.907 279 13 2 1 279 1 275 0.0 529
MS.gene34490.t1 MTR_1g079370 73.188 276 63 1 1 276 1 265 2.63e-146 410
MS.gene34490.t1 MTR_1g079180 73.835 279 56 4 1 276 1 265 4.77e-143 402
MS.gene34490.t1 MTR_1g079260 70.423 284 70 3 1 279 1 275 1.04e-141 399
MS.gene34490.t1 MTR_1g079230 69.286 280 81 2 1 279 1 276 1.09e-138 392
MS.gene34490.t1 MTR_1g079460 69.149 282 71 2 1 279 1 269 1.46e-136 386
MS.gene34490.t1 MTR_1g100613 79.583 240 49 0 20 259 5 244 1.83e-135 382
MS.gene34490.t1 MTR_1g079200 70.463 281 61 4 1 276 1 264 1.77e-134 381
MS.gene34490.t1 MTR_1g079380 71.942 278 67 1 1 278 1 267 1.28e-133 380
MS.gene34490.t1 MTR_1g079850 68.662 284 84 3 1 279 1 284 2.74e-131 374
MS.gene34490.t1 MTR_3g006850 64.262 305 79 5 3 279 16 318 2.23e-123 355
MS.gene34490.t1 MTR_1g079250 65.385 286 87 6 1 279 1 281 1.47e-113 329
MS.gene34490.t1 MTR_1g026510 61.168 291 96 7 1 279 1 286 2.23e-112 326
MS.gene34490.t1 MTR_3g452600 61.594 276 91 2 4 279 10 270 1.06e-111 323
MS.gene34490.t1 MTR_3g450990 55.442 294 96 4 4 279 10 286 2.41e-99 293
MS.gene34490.t1 MTR_1g079410 55.396 278 105 4 5 276 9 273 6.90e-99 291
MS.gene34490.t1 MTR_2g079100 58.608 273 92 4 3 273 8 261 9.56e-98 288
MS.gene34490.t1 MTR_1g079350 54.355 287 108 7 1 276 1 275 2.94e-93 276
MS.gene34490.t1 MTR_1g079340 52.667 300 104 8 1 276 40 325 1.32e-84 256
MS.gene34490.t1 MTR_1g079140 48.505 301 126 7 4 279 13 309 1.40e-84 256
MS.gene34490.t1 MTR_7g096300 58.397 262 83 5 1 256 1 242 2.48e-83 265
MS.gene34490.t1 MTR_1g079400 47.872 282 122 3 5 276 13 279 2.11e-80 244
MS.gene34490.t1 MTR_1g078470 60.104 193 61 3 84 276 8 184 1.08e-73 224
MS.gene34490.t1 MTR_7g112550 44.291 289 137 10 2 276 5 283 1.78e-69 216
MS.gene34490.t1 MTR_1g083580 40.860 279 158 5 2 276 6 281 5.78e-65 205
MS.gene34490.t1 MTR_7g112560 39.711 277 145 7 4 277 1 258 2.79e-62 197
MS.gene34490.t1 MTR_1g079240 57.368 190 59 4 87 276 12 179 2.83e-61 192
MS.gene34490.t1 MTR_1g076870 70.149 134 35 2 128 256 2 135 1.75e-59 186
MS.gene34490.t1 MTR_4g023570 37.319 276 131 7 4 276 1 237 2.08e-52 171
MS.gene34490.t1 MTR_1g079210 66.667 123 40 1 129 250 7 129 1.21e-45 150
MS.gene34490.t1 MTR_1g079130 46.114 193 83 5 101 276 1 189 4.13e-45 151
MS.gene34490.t1 MTR_1g079350 59.854 137 42 3 1 128 1 133 9.56e-44 148
MS.gene34490.t1 MTR_2g042540 64.762 105 35 2 1 103 1 105 8.60e-37 127
MS.gene34490.t1 MTR_1g078460 71.264 87 25 0 1 87 64 150 4.99e-36 126
MS.gene34490.t1 MTR_7g096310 56.061 132 50 3 57 186 38 163 2.88e-35 125
MS.gene34490.t1 MTR_3g058640 54.867 113 38 1 128 240 7 106 3.54e-34 120
MS.gene34490.t1 MTR_7g103380 26.316 285 173 5 6 275 21 283 8.10e-30 114
MS.gene34490.t1 MTR_0113s0040 30.846 201 124 3 2 188 20 219 4.26e-24 99.0
MS.gene34490.t1 MTR_1g101390 38.621 145 86 2 2 144 26 169 5.34e-23 95.9
MS.gene34490.t1 MTR_1g079220 60.759 79 18 1 165 243 1 66 8.28e-23 89.7
MS.gene34490.t1 MTR_4g083970 26.818 220 126 4 63 277 102 291 1.49e-20 89.4
MS.gene34490.t1 MTR_0002s0020 30.539 167 106 3 6 165 24 187 1.58e-18 83.6
MS.gene34490.t1 MTR_4g102770 33.333 144 92 2 6 146 21 163 3.96e-18 82.4
MS.gene34490.t1 MTR_5g010800 30.137 146 95 4 6 147 19 161 4.05e-16 77.0
MS.gene34490.t1 MTR_1g079390 72.000 50 12 2 222 271 8 55 5.20e-15 68.2
MS.gene34490.t1 MTR_1g079190 73.171 41 11 0 228 268 134 174 2.22e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34490.t1 AT2G02360 42.909 275 134 5 4 275 14 268 6.27e-75 230
MS.gene34490.t1 AT1G80110 43.542 271 134 6 6 275 3 255 1.21e-67 211
MS.gene34490.t1 AT2G02340 42.446 278 142 5 4 275 36 301 9.58e-65 205
MS.gene34490.t1 AT2G02240 42.336 274 138 5 4 275 61 316 1.24e-64 205
MS.gene34490.t1 AT2G02230 37.662 308 157 7 4 279 32 336 1.04e-63 203
MS.gene34490.t1 AT2G02250 41.667 276 138 8 4 275 47 303 1.90e-63 202
MS.gene34490.t1 AT1G09155 41.935 279 152 6 7 276 3 280 3.35e-63 201
MS.gene34490.t1 AT1G56250 41.429 280 154 5 7 277 4 282 1.09e-60 194
MS.gene34490.t1 AT1G56240 41.007 278 154 5 7 275 4 280 2.68e-59 190
MS.gene34490.t1 AT2G02350 37.410 278 153 7 2 275 22 282 1.50e-56 184
MS.gene34490.t1 AT2G02310 35.507 276 159 4 4 276 45 304 1.56e-52 174
MS.gene34490.t1 AT2G02320 37.545 277 146 7 6 275 42 298 2.03e-49 166
MS.gene34490.t1 AT5G24560 42.188 192 98 4 4 192 3 184 1.55e-42 144
MS.gene34490.t1 AT5G24560 44.286 70 29 2 216 276 124 192 4.68e-11 61.2
MS.gene34490.t1 AT2G02300 34.875 281 142 9 4 276 34 281 1.92e-42 147
MS.gene34490.t1 AT3G53000 28.179 291 171 7 3 278 20 287 2.37e-30 115
MS.gene34490.t1 AT2G02350 33.520 179 101 6 101 275 1 165 2.62e-26 102
MS.gene34490.t1 AT1G12710 25.517 290 164 7 3 275 27 281 1.28e-20 89.4
MS.gene34490.t1 AT1G63090 30.097 206 125 6 3 192 25 227 1.62e-19 86.7
MS.gene34490.t1 AT5G52120 24.749 299 165 8 1 275 18 280 1.10e-18 84.3
MS.gene34490.t1 AT3G61060 31.915 141 93 2 6 144 27 166 2.16e-18 83.2
MS.gene34490.t1 AT3G61060 30.496 141 96 1 6 144 27 167 1.77e-17 80.9
MS.gene34490.t1 AT4G19840 28.272 191 104 6 89 276 85 245 1.19e-14 72.4
MS.gene34490.t1 AT1G12710 30.435 161 106 3 3 160 27 184 1.84e-14 72.8

Find 80 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCTGCATACTGAGTATT+TGG 0.255011 1.2:+75375116 None:intergenic
TTCTGCCTGCGTTCTACATT+TGG 0.271945 1.2:+75374987 None:intergenic
CTTGTATACAAATTGATTGA+TGG 0.301820 1.2:-75375092 MS.gene34490:CDS
CTAGATCTCTCGCCATTACT+TGG 0.320149 1.2:-75376036 MS.gene34490:CDS
ATGGGAGAGTTCTTCAATTC+AGG 0.321358 1.2:-75374864 MS.gene34490:CDS
CATCATCGACGATGCCAAAA+AGG 0.324659 1.2:-75376807 MS.gene34490:intron
CGCAGACATGGAAGACTTTA+CGG 0.338884 1.2:-75374963 MS.gene34490:CDS
AGCAAATGCTCCTTCCAAAA+AGG 0.353184 1.2:-75376861 MS.gene34490:CDS
TAGCACTAAAATTGTCTGTT+TGG 0.362941 1.2:-75375012 MS.gene34490:CDS
GATGAGTGTTATCGAGATAA+AGG 0.385187 1.2:-75374820 MS.gene34490:CDS
AGACGAAGATTAGCAACTTC+GGG 0.388577 1.2:+75375188 None:intergenic
TGAAATGCAGAGCTTTCAAT+TGG 0.399907 1.2:-75376095 MS.gene34490:intron
GGACCACTATGCCTGATTCC+AGG 0.401514 1.2:-75375988 MS.gene34490:intron
CCGCCGATTCCGATGCCGTC+TGG 0.403257 1.2:-75376937 MS.gene34490:CDS
GAGAGTCTGCCGGCGTCAAC+AGG 0.416723 1.2:+75376986 None:intergenic
AGGAGTCGTACGAGACAGTA+TGG 0.422103 1.2:+75377006 None:intergenic
AAGGGGAATTTCTTTCTTGA+GGG 0.424911 1.2:-75374786 MS.gene34490:CDS
AAAATGGCCAACCTGGAATC+AGG 0.426615 1.2:+75375977 None:intergenic
TGATGATAGGTCGATCAGAT+AGG 0.426684 1.2:+75376825 None:intergenic
TTATCTCGATAACACTCATC+TGG 0.440534 1.2:+75374823 None:intergenic
ATTCCAGACGGCATCGGAAT+CGG 0.451722 1.2:+75376934 None:intergenic
GTTGCTTAATTGTCTACCTT+AGG 0.451895 1.2:+75374750 None:intergenic
CGCAGGCAGAACCGCAGACA+TGG 0.453913 1.2:-75374975 MS.gene34490:CDS
ATGATGACCGCTATTGGATC+TGG 0.457353 1.2:-75376009 MS.gene34490:CDS
TAGATCTCTCGCCATTACTT+GGG 0.463262 1.2:-75376035 MS.gene34490:CDS
TTGGCATCGTCGATGATGAT+AGG 0.465612 1.2:+75376812 None:intergenic
CAAGGGGAATTTCTTTCTTG+AGG 0.468108 1.2:-75374787 MS.gene34490:CDS
TACAAATTGATTGATGGCTA+TGG 0.469002 1.2:-75375086 MS.gene34490:CDS
GGGGTGATGATGACCGCTAT+TGG 0.473829 1.2:-75376015 MS.gene34490:CDS
TGAGATGATAGAGTTGATAT+CGG 0.478686 1.2:+75376898 None:intergenic
CGTCCTTGTGTGAGAAGTGA+TGG 0.482566 1.2:-75374903 MS.gene34490:CDS
ACAAATTGATTGATGGCTAT+GGG 0.489453 1.2:-75375085 MS.gene34490:CDS
CTCAAGAAAGAAATTCCCCT+TGG 0.498320 1.2:+75374788 None:intergenic
AAGACGAAGATTAGCAACTT+CGG 0.509597 1.2:+75375187 None:intergenic
CTTCCTGTGGATTTATCTGT+CGG 0.516064 1.2:-75375053 MS.gene34490:CDS
GGCGGCAGAAAGGAAAGTCT+TGG 0.517109 1.2:+75376955 None:intergenic
GGGTTTGAAGATTTAGCAGA+AGG 0.520179 1.2:-75377040 MS.gene34490:CDS
ATGATAGAGTTGATATCGGA+AGG 0.534915 1.2:+75376902 None:intergenic
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 1.2:-75374882 MS.gene34490:CDS
CATCGGAATCGGCGGCAGAA+AGG 0.542303 1.2:+75376945 None:intergenic
TGGGTGGTTGGAGATTGAGA+TGG 0.542699 1.2:-75374883 MS.gene34490:CDS
GTCATCATCACCCCAAGTAA+TGG 0.545677 1.2:+75376024 None:intergenic
GTGTGGTGGCTCGAAATTCG+TGG 0.547967 1.2:-75375164 MS.gene34490:CDS
TGGGTTTGAGAACCTTCCTG+TGG 0.549562 1.2:-75375066 MS.gene34490:CDS
GATGATAGGTCGATCAGATA+GGG 0.551413 1.2:+75376826 None:intergenic
TGTGAGAAGTGATGGGTGGT+TGG 0.556044 1.2:-75374895 MS.gene34490:CDS
GATTTATCTGTCGGTGTCGA+AGG 0.557631 1.2:-75375044 MS.gene34490:CDS
CTAATCTTCGTCTTGTGTGG+TGG 0.562220 1.2:-75375178 MS.gene34490:CDS
TTGCTAATCTTCGTCTTGTG+TGG 0.565369 1.2:-75375181 MS.gene34490:CDS
AGTGTTATCGAGATAAAGGC+TGG 0.568289 1.2:-75374816 MS.gene34490:CDS
GGAAACGACGGAGAGTCTGC+CGG 0.570360 1.2:+75376976 None:intergenic
GAAGGAGCATTTGCTAGAGA+AGG 0.571483 1.2:+75376869 None:intergenic
CAACCTGGAATCAGGCATAG+TGG 0.580151 1.2:+75375985 None:intergenic
GAAGACTTTACGGTCGTGCG+AGG 0.580931 1.2:-75374953 MS.gene34490:CDS
GGGAATAGAAGTGAGGCCTA+AGG 0.588625 1.2:-75374766 MS.gene34490:CDS
AGGTTGCATGACAGAGTGGT+AGG 0.597534 1.2:-75374933 MS.gene34490:CDS
TTATCTGTCGGTGTCGAAGG+TGG 0.597798 1.2:-75375041 MS.gene34490:CDS
CACCCATCACTTCTCACACA+AGG 0.598274 1.2:+75374900 None:intergenic
AGATCTCTCGCCATTACTTG+GGG 0.598827 1.2:-75376034 MS.gene34490:CDS
ATAAAGGCTGGTGAGACCAA+GGG 0.599634 1.2:-75374804 MS.gene34490:CDS
GATAAAGGCTGGTGAGACCA+AGG 0.599999 1.2:-75374805 MS.gene34490:CDS
TTCTTGAGGGAATAGAAGTG+AGG 0.602948 1.2:-75374773 MS.gene34490:CDS
TGTGGTGGCTCGAAATTCGT+GGG 0.618223 1.2:-75375163 MS.gene34490:CDS
CCAGACGGCATCGGAATCGG+CGG 0.622067 1.2:+75376937 None:intergenic
GTCCTTGTGTGAGAAGTGAT+GGG 0.626852 1.2:-75374902 MS.gene34490:CDS
ACACCGACAGATAAATCCAC+AGG 0.642651 1.2:+75375050 None:intergenic
ATACTGAGTATTTGGAGACA+AGG 0.643026 1.2:+75375124 None:intergenic
AAAGTGATTCCAGACGGCAT+CGG 0.647589 1.2:+75376928 None:intergenic
TAAAGGCTGGTGAGACCAAG+GGG 0.647680 1.2:-75374803 MS.gene34490:CDS
TGGATCCAAATGTAGAACGC+AGG 0.654508 1.2:-75374992 MS.gene34490:CDS
AAGGAAAGTCTTGGAAACGA+CGG 0.661166 1.2:+75376964 None:intergenic
CGTAAAGTCTTCCATGTCTG+CGG 0.661378 1.2:+75374964 None:intergenic
AGGAAGAAAGTGATTCCAGA+CGG 0.665074 1.2:+75376922 None:intergenic
TGCGAGGTTGCATGACAGAG+TGG 0.676261 1.2:-75374937 MS.gene34490:CDS
CGACAGATAAATCCACAGGA+AGG 0.695590 1.2:+75375054 None:intergenic
GACGAAGATTAGCAACTTCG+GGG 0.697062 1.2:+75375189 None:intergenic
CGTACGACTCCTGTTGACGC+CGG 0.716965 1.2:-75376995 MS.gene34490:CDS
CTTGTGTGAGAAGTGATGGG+TGG 0.722396 1.2:-75374899 MS.gene34490:CDS
TAGTGGTCCAGATCCAATAG+CGG 0.737188 1.2:+75376002 None:intergenic
AGTCGTACGAGACAGTATGG+AGG 0.760723 1.2:+75377009 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTAGATATATTATTAAAT+AGG - chr1.2:75375478-75375497 MS.gene34490:intron 10.0%
!! GTAATTATTTAAAAAAGAAA+TGG + chr1.2:75375397-75375416 None:intergenic 10.0%
!! GTACATTTATTATTATTATT+AGG - chr1.2:75375207-75375226 MS.gene34490:intron 10.0%
!! AATAAAAATGAGTAAATTTG+GGG + chr1.2:75375855-75375874 None:intergenic 15.0%
!! CAATAAAAATGAGTAAATTT+GGG + chr1.2:75375856-75375875 None:intergenic 15.0%
!! TGAAATAATTTAGTTATCAT+TGG - chr1.2:75376340-75376359 MS.gene34490:intron 15.0%
!! AAAAAAAAGTTATTAGACAG+TGG + chr1.2:75376263-75376282 None:intergenic 20.0%
!! ATAAAAATGAGTAAATTTGG+GGG + chr1.2:75375854-75375873 None:intergenic 20.0%
!! ATTGATTGCTGTAAAATATA+TGG - chr1.2:75375630-75375649 MS.gene34490:intron 20.0%
!! CCAATAAAAATGAGTAAATT+TGG + chr1.2:75375857-75375876 None:intergenic 20.0%
!!! ACTGATTTTGATTAATTTGT+AGG + chr1.2:75375508-75375527 None:intergenic 20.0%
!!! CCAAATTTACTCATTTTTAT+TGG - chr1.2:75375854-75375873 MS.gene34490:intron 20.0%
!!! CTGATTTTGATTAATTTGTA+GGG + chr1.2:75375507-75375526 None:intergenic 20.0%
!!! GATTTTTTAAATGCTTAGTT+TGG - chr1.2:75375654-75375673 MS.gene34490:intron 20.0%
!!! TGATTTTGATTAATTTGTAG+GGG + chr1.2:75375506-75375525 None:intergenic 20.0%
! AGGATTCATAACATCATAAA+TGG + chr1.2:75376533-75376552 None:intergenic 25.0%
! ATTGATTGTTCTTTCATGTT+AGG - chr1.2:75375084-75375103 MS.gene34490:CDS 25.0%
! CTTGTATACAAATTGATTGA+TGG - chr1.2:75376709-75376728 MS.gene34490:intron 25.0%
! GAACAATGTTAAAACAAACA+AGG + chr1.2:75375895-75375914 None:intergenic 25.0%
! GAATTGAGAAAAAGTTGAAA+AGG + chr1.2:75376553-75376572 None:intergenic 25.0%
! TGAGAAGATATAGAAAATAC+AGG + chr1.2:75375610-75375629 None:intergenic 25.0%
! TTGATTGTTCTTTCATGTTA+GGG - chr1.2:75375085-75375104 MS.gene34490:CDS 25.0%
! TTTCAATTGGATAGAAAAAG+TGG - chr1.2:75375719-75375738 MS.gene34490:intron 25.0%
!! AATATGTGATGATACCTTTT+TGG + chr1.2:75375011-75375030 None:intergenic 25.0%
!! AATGCTAATAATAAGCCTTT+TGG - chr1.2:75375677-75375696 MS.gene34490:intron 25.0%
!! ATGCTAATAATAAGCCTTTT+GGG - chr1.2:75375678-75375697 MS.gene34490:intron 25.0%
!! GTTATTACTCTTTTTGATGA+TGG - chr1.2:75376434-75376453 MS.gene34490:intron 25.0%
AATTGTTCATTCCATTTCCT+TGG - chr1.2:75375932-75375951 MS.gene34490:intron 30.0%
AGATGAAAGTTTCCTTAATG+AGG + chr1.2:75375999-75376018 None:intergenic 30.0%
ATACGAAATATCCAAGGAAA+TGG + chr1.2:75375946-75375965 None:intergenic 30.0%
ATGAAAGTTTCCTTAATGAG+GGG + chr1.2:75375997-75376016 None:intergenic 30.0%
GATGAAAGTTTCCTTAATGA+GGG + chr1.2:75375998-75376017 None:intergenic 30.0%
GTTAAAACAAACAAGGTAGA+AGG + chr1.2:75375888-75375907 None:intergenic 30.0%
TAGCACTAAAATTGTCTGTT+TGG - chr1.2:75376789-75376808 MS.gene34490:intron 30.0%
TCAGCCAATATACATTTACA+GGG + chr1.2:75375569-75375588 None:intergenic 30.0%
TGCATTTCAATATACCCAAA+AGG + chr1.2:75375695-75375714 None:intergenic 30.0%
TTCAGCCAATATACATTTAC+AGG + chr1.2:75375570-75375589 None:intergenic 30.0%
TTGAATATACCCATAGTCTT+TGG - chr1.2:75376044-75376063 MS.gene34490:CDS 30.0%
! ACAAATTGATTGATGGCTAT+GGG - chr1.2:75376716-75376735 MS.gene34490:intron 30.0%
! CATCATCGTCTGAAATATTA+GGG - chr1.2:75375032-75375051 MS.gene34490:CDS 30.0%
! TACAAATTGATTGATGGCTA+TGG - chr1.2:75376715-75376734 MS.gene34490:intron 30.0%
! TCATCATCGTCTGAAATATT+AGG - chr1.2:75375031-75375050 MS.gene34490:CDS 30.0%
!! ACAAGAAGTATTCACTTAGA+AGG + chr1.2:75376175-75376194 None:intergenic 30.0%
!! AGACAATTTTAGTGCTACTA+TGG + chr1.2:75376786-75376805 None:intergenic 30.0%
!! TGAGATGATAGAGTTGATAT+CGG + chr1.2:75374906-75374925 None:intergenic 30.0%
!!! GAGCTGTTTCAAAGTTTTTT+TGG - chr1.2:75376396-75376415 MS.gene34490:intron 30.0%
AAAACAAACAAGGTAGAAGG+TGG + chr1.2:75375885-75375904 None:intergenic 35.0%
AAAATGAGTAAATTTGGGGG+AGG + chr1.2:75375851-75375870 None:intergenic 35.0%
AACCTCAATAACAGTGATGT+TGG - chr1.2:75376236-75376255 MS.gene34490:intron 35.0%
AAGACGAAGATTAGCAACTT+CGG + chr1.2:75376617-75376636 None:intergenic 35.0%
AAGGGGAATTTCTTTCTTGA+GGG - chr1.2:75377015-75377034 MS.gene34490:CDS 35.0%
AATGAACAATTCACCGAGAA+AGG + chr1.2:75375923-75375942 None:intergenic 35.0%
ACTCAGATACGAAATATCCA+AGG + chr1.2:75375952-75375971 None:intergenic 35.0%
AGAAGAAAAGCCAAAGACTA+TGG + chr1.2:75376057-75376076 None:intergenic 35.0%
ATACTGAGTATTTGGAGACA+AGG + chr1.2:75376680-75376699 None:intergenic 35.0%
CATTGTTCTTTCTCCTTTCT+CGG - chr1.2:75375907-75375926 MS.gene34490:intron 35.0%
CTTTACAAACCAAACCAACA+TGG + chr1.2:75375266-75375285 None:intergenic 35.0%
GAAGAAAAGCCAAAGACTAT+GGG + chr1.2:75376056-75376075 None:intergenic 35.0%
GATGAGTGTTATCGAGATAA+AGG - chr1.2:75376981-75377000 MS.gene34490:CDS 35.0%
GGATAATTACACATTGACAG+CGG + chr1.2:75375419-75375438 None:intergenic 35.0%
TAAATTTGGGGGAGGAAAAA+TGG + chr1.2:75375843-75375862 None:intergenic 35.0%
TAAGCTGCATACTGAGTATT+TGG + chr1.2:75376688-75376707 None:intergenic 35.0%
TCAGGTGTATGGTTAACTTT+GGG + chr1.2:75376211-75376230 None:intergenic 35.0%
TGAAATGCAGAGCTTTCAAT+TGG - chr1.2:75375706-75375725 MS.gene34490:intron 35.0%
TGTGCCCTGTAAATGTATAT+TGG - chr1.2:75375562-75375581 MS.gene34490:intron 35.0%
TGTTATTGAGGTTCAGATTC+AGG + chr1.2:75376229-75376248 None:intergenic 35.0%
TGTTCATAAGTGTAAGTGCT+AGG + chr1.2:75375310-75375329 None:intergenic 35.0%
TTATCTCGATAACACTCATC+TGG + chr1.2:75376981-75377000 None:intergenic 35.0%
TTCAGGTGTATGGTTAACTT+TGG + chr1.2:75376212-75376231 None:intergenic 35.0%
! TCTGGACTTCTTCATTTTCA+AGG + chr1.2:75376963-75376982 None:intergenic 35.0%
! TTGAATGTAACCAAGAGTGT+CGG + chr1.2:75375369-75375388 None:intergenic 35.0%
!! ATGATAGAGTTGATATCGGA+AGG + chr1.2:75374902-75374921 None:intergenic 35.0%
AAACCAACATGGTGGTTCAA+CGG + chr1.2:75375255-75375274 None:intergenic 40.0%
AAGGAAAGTCTTGGAAACGA+CGG + chr1.2:75374840-75374859 None:intergenic 40.0%
ACAATTACCGAAAACGTGTC+TGG - chr1.2:75375327-75375346 MS.gene34490:intron 40.0%
AGACGAAGATTAGCAACTTC+GGG + chr1.2:75376616-75376635 None:intergenic 40.0%
AGCAAATGCTCCTTCCAAAA+AGG - chr1.2:75374940-75374959 MS.gene34490:CDS 40.0%
AGGAAGAAAGTGATTCCAGA+CGG + chr1.2:75374882-75374901 None:intergenic 40.0%
AGTGTTATCGAGATAAAGGC+TGG - chr1.2:75376985-75377004 MS.gene34490:CDS 40.0%
ATGGGAGAGTTCTTCAATTC+AGG - chr1.2:75376937-75376956 MS.gene34490:CDS 40.0%
CAAGGGGAATTTCTTTCTTG+AGG - chr1.2:75377014-75377033 MS.gene34490:CDS 40.0%
CTCAAGAAAGAAATTCCCCT+TGG + chr1.2:75377016-75377035 None:intergenic 40.0%
CTTCCTGTGGATTTATCTGT+CGG - chr1.2:75376748-75376767 MS.gene34490:intron 40.0%
GACACACACAAACACAAACA+TGG + chr1.2:75375440-75375459 None:intergenic 40.0%
GACCAACATCACTGTTATTG+AGG + chr1.2:75376241-75376260 None:intergenic 40.0%
GATGATAGGTCGATCAGATA+GGG + chr1.2:75374978-75374997 None:intergenic 40.0%
GGGTTTGAAGATTTAGCAGA+AGG - chr1.2:75374761-75374780 MS.gene34490:CDS 40.0%
GTTTCCTTAATGAGGGGAAT+AGG + chr1.2:75375991-75376010 None:intergenic 40.0%
TACAAACCAAACCAACATGG+TGG + chr1.2:75375263-75375282 None:intergenic 40.0%
TAGATCTCTCGCCATTACTT+GGG - chr1.2:75375766-75375785 MS.gene34490:intron 40.0%
TGATCCTATTCCCCTCATTA+AGG - chr1.2:75375984-75376003 MS.gene34490:intron 40.0%
TGATGATAGGTCGATCAGAT+AGG + chr1.2:75374979-75374998 None:intergenic 40.0%
TTCTTGAGGGAATAGAAGTG+AGG - chr1.2:75377028-75377047 MS.gene34490:CDS 40.0%
TTGCTAATCTTCGTCTTGTG+TGG - chr1.2:75376620-75376639 MS.gene34490:intron 40.0%
! AGATAGAGAGCCTTTTTGGA+AGG + chr1.2:75374953-75374972 None:intergenic 40.0%
! CATCTCTGCAACTTTTGTGT+TGG - chr1.2:75376582-75376601 MS.gene34490:intron 40.0%
AAAATGGCCAACCTGGAATC+AGG + chr1.2:75375827-75375846 None:intergenic 45.0%
AAAGTGATTCCAGACGGCAT+CGG + chr1.2:75374876-75374895 None:intergenic 45.0%
ACACCGACAGATAAATCCAC+AGG + chr1.2:75376754-75376773 None:intergenic 45.0%
AGATCTCTCGCCATTACTTG+GGG - chr1.2:75375767-75375786 MS.gene34490:intron 45.0%
ATAAAGGCTGGTGAGACCAA+GGG - chr1.2:75376997-75377016 MS.gene34490:CDS 45.0%
ATGATGACCGCTATTGGATC+TGG - chr1.2:75375792-75375811 MS.gene34490:intron 45.0%
ATGGTGGTTCAACGGAACAA+CGG + chr1.2:75375247-75375266 None:intergenic 45.0%
CATCATCGACGATGCCAAAA+AGG - chr1.2:75374994-75375013 MS.gene34490:CDS 45.0%
CGACAGATAAATCCACAGGA+AGG + chr1.2:75376750-75376769 None:intergenic 45.0%
CGCAGACATGGAAGACTTTA+CGG - chr1.2:75376838-75376857 MS.gene34490:CDS 45.0%
CGTAAAGTCTTCCATGTCTG+CGG + chr1.2:75376840-75376859 None:intergenic 45.0%
CTAATCTTCGTCTTGTGTGG+TGG - chr1.2:75376623-75376642 MS.gene34490:intron 45.0%
CTAGATCTCTCGCCATTACT+TGG - chr1.2:75375765-75375784 MS.gene34490:intron 45.0%
GACGAAGATTAGCAACTTCG+GGG + chr1.2:75376615-75376634 None:intergenic 45.0%
GAGGTTCAGATTCAGGTGTA+TGG + chr1.2:75376222-75376241 None:intergenic 45.0%
GCAAGATGAACGACAATGAG+AGG - chr1.2:75376021-75376040 MS.gene34490:CDS 45.0%
GTCATCATCACCCCAAGTAA+TGG + chr1.2:75375780-75375799 None:intergenic 45.0%
GTCCTTGTGTGAGAAGTGAT+GGG - chr1.2:75376899-75376918 MS.gene34490:CDS 45.0%
GTGTTTGTGTGTGTCTGTGT+CGG - chr1.2:75375445-75375464 MS.gene34490:intron 45.0%
TAGTGGTCCAGATCCAATAG+CGG + chr1.2:75375802-75375821 None:intergenic 45.0%
TGGATCCAAATGTAGAACGC+AGG - chr1.2:75376809-75376828 MS.gene34490:CDS 45.0%
TTCTGCCTGCGTTCTACATT+TGG + chr1.2:75376817-75376836 None:intergenic 45.0%
TTGGCATCGTCGATGATGAT+AGG + chr1.2:75374992-75375011 None:intergenic 45.0%
! CTGCAACTTTTGTGTTGGAC+AGG - chr1.2:75376587-75376606 MS.gene34490:intron 45.0%
! GGCAAGATAGAGAGCCTTTT+TGG + chr1.2:75374957-75374976 None:intergenic 45.0%
! GTTGAACCACCATGTTGGTT+TGG - chr1.2:75375254-75375273 MS.gene34490:intron 45.0%
!! GAAGGAGCATTTGCTAGAGA+AGG + chr1.2:75374935-75374954 None:intergenic 45.0%
!! GATTTATCTGTCGGTGTCGA+AGG - chr1.2:75376757-75376776 MS.gene34490:intron 45.0%
!! TACATTTATTATTATTATTA+GGG - chr1.2:75375208-75375227 MS.gene34490:intron 5.0%
ACTGTTGTCACCGACACTCT+TGG - chr1.2:75375356-75375375 MS.gene34490:intron 50.0%
AGGAGTCGTACGAGACAGTA+TGG + chr1.2:75374798-75374817 None:intergenic 50.0%
AGGTTGCATGACAGAGTGGT+AGG - chr1.2:75376868-75376887 MS.gene34490:CDS 50.0%
AGTCGTACGAGACAGTATGG+AGG + chr1.2:75374795-75374814 None:intergenic 50.0%
CAACCTGGAATCAGGCATAG+TGG + chr1.2:75375819-75375838 None:intergenic 50.0%
CACCCATCACTTCTCACACA+AGG + chr1.2:75376904-75376923 None:intergenic 50.0%
CACTATGCCTGATTCCAGGT+TGG - chr1.2:75375817-75375836 MS.gene34490:intron 50.0%
CGTCCTTGTGTGAGAAGTGA+TGG - chr1.2:75376898-75376917 MS.gene34490:CDS 50.0%
GATAAAGGCTGGTGAGACCA+AGG - chr1.2:75376996-75377015 MS.gene34490:CDS 50.0%
GGGAATAGAAGTGAGGCCTA+AGG - chr1.2:75377035-75377054 MS.gene34490:CDS 50.0%
GGGTGGTTGGAGATTGAGAT+GGG - chr1.2:75376919-75376938 MS.gene34490:CDS 50.0%
GTTCCGTTGAACCACCATGT+TGG - chr1.2:75375249-75375268 MS.gene34490:intron 50.0%
TAAAGGCTGGTGAGACCAAG+GGG - chr1.2:75376998-75377017 MS.gene34490:CDS 50.0%
TGGGTGGTTGGAGATTGAGA+TGG - chr1.2:75376918-75376937 MS.gene34490:CDS 50.0%
TGGGTTTGAGAACCTTCCTG+TGG - chr1.2:75376735-75376754 MS.gene34490:intron 50.0%
TGTGGTGGCTCGAAATTCGT+GGG - chr1.2:75376638-75376657 MS.gene34490:intron 50.0%
! ATTCCAGACGGCATCGGAAT+CGG + chr1.2:75374870-75374889 None:intergenic 50.0%
! CTTGTGTGAGAAGTGATGGG+TGG - chr1.2:75376902-75376921 MS.gene34490:CDS 50.0%
! TCGGACACCAGACACGTTTT+CGG + chr1.2:75375337-75375356 None:intergenic 50.0%
!! AGAGTGTCGGTGACAACAGT+CGG + chr1.2:75375356-75375375 None:intergenic 50.0%
!! TGTGAGAAGTGATGGGTGGT+TGG - chr1.2:75376906-75376925 MS.gene34490:CDS 50.0%
!! TTATCTGTCGGTGTCGAAGG+TGG - chr1.2:75376760-75376779 MS.gene34490:intron 50.0%
GAAGACTTTACGGTCGTGCG+AGG - chr1.2:75376848-75376867 MS.gene34490:CDS 55.0%
GGACCACTATGCCTGATTCC+AGG - chr1.2:75375813-75375832 MS.gene34490:intron 55.0%
GGCGGCAGAAAGGAAAGTCT+TGG + chr1.2:75374849-75374868 None:intergenic 55.0%
GGGAGGAAAAATGGCCAACC+TGG + chr1.2:75375834-75375853 None:intergenic 55.0%
GTGTGGTGGCTCGAAATTCG+TGG - chr1.2:75376637-75376656 MS.gene34490:intron 55.0%
TGCGAGGTTGCATGACAGAG+TGG - chr1.2:75376864-75376883 MS.gene34490:CDS 55.0%
! GGGGTGATGATGACCGCTAT+TGG - chr1.2:75375786-75375805 MS.gene34490:intron 55.0%
CATCGGAATCGGCGGCAGAA+AGG + chr1.2:75374859-75374878 None:intergenic 60.0%
CGTACGACTCCTGTTGACGC+CGG - chr1.2:75374806-75374825 MS.gene34490:CDS 60.0%
GGAAACGACGGAGAGTCTGC+CGG + chr1.2:75374828-75374847 None:intergenic 60.0%
CGCAGGCAGAACCGCAGACA+TGG - chr1.2:75376826-75376845 MS.gene34490:CDS 65.0%
GAGAGTCTGCCGGCGTCAAC+AGG + chr1.2:75374818-75374837 None:intergenic 65.0%
! CCAGACGGCATCGGAATCGG+CGG + chr1.2:75374867-75374886 None:intergenic 65.0%
!! CCGCCGATTCCGATGCCGTC+TGG - chr1.2:75374864-75374883 MS.gene34490:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 75374755 75377068 75374755 ID=MS.gene34490
chr1.2 mRNA 75374755 75377068 75374755 ID=MS.gene34490.t1;Parent=MS.gene34490
chr1.2 exon 75376808 75377068 75376808 ID=MS.gene34490.t1.exon1;Parent=MS.gene34490.t1
chr1.2 CDS 75376808 75377068 75376808 ID=cds.MS.gene34490.t1;Parent=MS.gene34490.t1
chr1.2 exon 75375989 75376107 75375989 ID=MS.gene34490.t1.exon2;Parent=MS.gene34490.t1
chr1.2 CDS 75375989 75376107 75375989 ID=cds.MS.gene34490.t1;Parent=MS.gene34490.t1
chr1.2 exon 75374755 75375214 75374755 ID=MS.gene34490.t1.exon3;Parent=MS.gene34490.t1
chr1.2 CDS 75374755 75375214 75374755 ID=cds.MS.gene34490.t1;Parent=MS.gene34490.t1
Gene Sequence

>MS.gene34490

ATGACAGGGTTTGAAGATTTAGCAGAAGGATGCATTTCCTCCATACTGTCTCGTACGACTCCTGTTGACGCCGGCAGACTCTCCGTCGTTTCCAAGACTTTCCTTTCTGCCGCCGATTCCGATGCCGTCTGGAATCACTTTCTTCCTTCCGATATCAACTCTATCATCTCACAGTCACCTTCTCTAGCAAATGCTCCTTCCAAAAAGGCTCTCTATCTTGCCCTATCTGATCGACCTATCATCATCGACGATGCCAAAAAGGTATCATCACATATTTCATCATCGTCTGAAATATTAGGGTTTATTATCGTTGATCATACGTAAACTTAATTGATTGTTCTTTCATGTTAGGGCTTAAGATATTGACTGAACATTGATCATCAGAATTCACTTCTGCATGTATCTATAAATTACTTGATCGCTTTGCAAATAACTTGTTTTATAATAATCTTGTACATTTATTATTATTATTAGGGTAGTGCAGCTGAGCCGTTGTTCCGTTGAACCACCATGTTGGTTTGGTTTGTAAAGATATTCGATAGATTAGATCTACCTAGCACTTACACTTATGAACAATTACCGAAAACGTGTCTGGTGTCCGACTGTTGTCACCGACACTCTTGGTTACATTCAATTATGCCATTTCTTTTTTAAATAATTACCGCTGTCAATGTGTAATTATCCATGTTTGTGTTTGTGTGTGTCTGTGTCGGTGATTCATAGCATTAGATATATTATTAAATAGGTACCCCTACAAATTAATCAAAATCAGTTAACGATTTTGTTTATTTGTTTGTGCTCTTAAATTGTGCCCTGTAAATGTATATTGGCTGAAGAAAGTCTGACACTATGCCTGTATTTTCTATATCTTCTCAATTGATTGCTGTAAAATATATGGTGATTTTTTAAATGCTTAGTTTGGAATGCTAATAATAAGCCTTTTGGGTATATTGAAATGCAGAGCTTTCAATTGGATAGAAAAAGTGGAAACAAGTGTTACATGCTTGCTGCTAGATCTCTCGCCATTACTTGGGGTGATGATGACCGCTATTGGATCTGGACCACTATGCCTGATTCCAGGTTGGCCATTTTTCCTCCCCCAAATTTACTCATTTTTATTGGTTTCTCCACCTTCTACCTTGTTTGTTTTAACATTGTTCTTTCTCCTTTCTCGGTGAATTGTTCATTCCATTTCCTTGGATATTTCGTATCTGAGTTTATACTTTGATTGATCCTATTCCCCTCATTAAGGAAACTTTCATCTATGCAAGATGAACGACAATGAGAGGTTGAATATACCCATAGTCTTTGGCTTTTCTTCTATGAAAGATGAAAAACAATGAGAAGTTGAATATACATAAAGAAGTTAAATGAAAATATTTTTCATTTCAGCTTCTCTCACTGTCTCTTCATTTTTCCTTCTAAGTGAATACTTCTTGTTAGACTATTCAATCCCAAAGTTAACCATACACCTGAATCTGAACCTCAATAACAGTGATGTTGGTCCACTGTCTAATAACTTTTTTTTATAGATAACAAACAATACAACTTAGTAACTGAGAAGTTTATCATAATCGATTACACTTGAAATAATTTAGTTATCATTGGTACAATATATGATAACTGATGTTTTTATTAGTTGAGCTGTTTCAAAGTTTTTTTGGTGAAAATATTTTGCTGTTATTACTCTTTTTGATGATGGAAACTTTGATTCAACTCGCAAATTTTAGTTGATGAGCTTGCATTGTTTGTGTACGTACACATGTAAAAATATTCCATTTATGATGTTATGAATCCTTTTCAACTTTTTCTCAATTCTTGTATTCTCATCTCTGCAACTTTTGTGTTGGACAGGTTCCCCGAAGTTGCTAATCTTCGTCTTGTGTGGTGGCTCGAAATTCGTGGGATGATTAACAATCTTGCCTTGTCTCCAAATACTCAGTATGCAGCTTATCTTGTATACAAATTGATTGATGGCTATGGGTTTGAGAACCTTCCTGTGGATTTATCTGTCGGTGTCGAAGGTGGCCATAGTAGCACTAAAATTGTCTGTTTGGATCCAAATGTAGAACGCAGGCAGAACCGCAGACATGGAAGACTTTACGGTCGTGCGAGGTTGCATGACAGAGTGGTAGGATTACTGCGTCCTTGTGTGAGAAGTGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCTTCAATTCAGGCCTTGAAAATGAAGAAGTCCAGATGAGTGTTATCGAGATAAAGGCTGGTGAGACCAAGGGGAATTTCTTTCTTGAGGGAATAGAAGTGAGGCCTAAGGTAGACAATTAA
Protein sequence

>MS.gene34490.t1

MTGFEDLAEGCISSILSRTTPVDAGRLSVVSKTFLSAADSDAVWNHFLPSDINSIISQSPSLANAPSKKALYLALSDRPIIIDDAKKSFQLDRKSGNKCYMLAARSLAITWGDDDRYWIWTTMPDSRFPEVANLRLVWWLEIRGMINNLALSPNTQYAAYLVYKLIDGYGFENLPVDLSVGVEGGHSSTKIVCLDPNVERRQNRRHGRLYGRARLHDRVVGLLRPCVRSDGWLEIEMGEFFNSGLENEEVQMSVIEIKAGETKGNFFLEGIEVRPKVDN