AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005066

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005066.t1 MTR_1g079850 91.549 284 24 0 5 288 1 284 0.0 530
MS.gene005066.t1 MTR_1g100597 70.070 284 76 5 5 288 1 275 2.39e-130 371
MS.gene005066.t1 MTR_1g079180 67.972 281 74 5 5 285 1 265 1.90e-128 366
MS.gene005066.t1 MTR_1g079370 64.057 281 85 3 5 285 1 265 3.56e-124 355
MS.gene005066.t1 MTR_1g079200 66.078 283 75 3 5 285 1 264 7.51e-123 352
MS.gene005066.t1 MTR_1g079230 65.263 285 89 4 5 288 1 276 1.76e-120 346
MS.gene005066.t1 MTR_1g079260 62.807 285 95 4 5 288 1 275 1.10e-118 342
MS.gene005066.t1 MTR_1g079460 61.972 284 93 3 5 288 1 269 2.10e-115 333
MS.gene005066.t1 MTR_1g079380 62.278 281 90 2 5 285 1 265 9.14e-115 332
MS.gene005066.t1 MTR_1g079250 65.625 288 88 6 5 288 1 281 4.32e-114 331
MS.gene005066.t1 MTR_1g100613 68.675 249 65 4 24 268 5 244 4.19e-110 318
MS.gene005066.t1 MTR_3g006850 58.766 308 94 6 8 288 17 318 2.10e-105 310
MS.gene005066.t1 MTR_1g026510 58.362 293 106 6 5 288 1 286 9.07e-105 307
MS.gene005066.t1 MTR_3g452600 57.193 285 102 3 4 288 6 270 2.27e-101 297
MS.gene005066.t1 MTR_2g079100 56.584 281 96 3 4 282 5 261 1.70e-93 277
MS.gene005066.t1 MTR_3g450990 53.156 301 105 5 4 288 6 286 1.10e-90 271
MS.gene005066.t1 MTR_1g079410 49.828 291 124 5 1 286 1 274 2.09e-84 254
MS.gene005066.t1 MTR_1g079350 52.218 293 110 8 5 285 1 275 1.78e-83 252
MS.gene005066.t1 MTR_1g079340 50.820 305 113 9 2 285 37 325 2.73e-82 251
MS.gene005066.t1 MTR_1g079140 46.801 297 136 5 8 285 13 306 3.50e-78 240
MS.gene005066.t1 MTR_7g096300 54.135 266 93 7 5 265 1 242 1.03e-74 243
MS.gene005066.t1 MTR_1g079400 43.056 288 132 6 9 285 13 279 1.62e-64 204
MS.gene005066.t1 MTR_1g078470 56.757 185 63 3 101 285 17 184 4.30e-63 197
MS.gene005066.t1 MTR_7g112550 41.724 290 154 10 3 285 2 283 4.44e-60 192
MS.gene005066.t1 MTR_1g083580 38.889 288 156 9 6 285 6 281 9.44e-59 189
MS.gene005066.t1 MTR_1g079240 53.927 191 65 3 95 285 12 179 3.45e-55 177
MS.gene005066.t1 MTR_2g042540 73.832 107 26 1 5 111 1 105 1.22e-48 158
MS.gene005066.t1 MTR_7g112560 36.918 279 153 7 8 285 1 257 5.15e-47 158
MS.gene005066.t1 MTR_1g076870 59.259 135 49 2 136 265 2 135 5.00e-46 152
MS.gene005066.t1 MTR_1g079350 52.663 169 69 4 5 167 1 164 2.67e-44 150
MS.gene005066.t1 MTR_4g023570 34.173 278 142 4 8 285 1 237 9.00e-42 144
MS.gene005066.t1 MTR_1g079130 44.444 189 93 4 109 285 1 189 1.44e-38 134
MS.gene005066.t1 MTR_1g079210 56.250 128 48 2 137 260 7 130 8.82e-38 130
MS.gene005066.t1 MTR_1g078460 67.391 92 26 2 4 95 63 150 8.16e-31 113
MS.gene005066.t1 MTR_3g058640 53.509 114 39 1 136 249 7 106 3.22e-30 110
MS.gene005066.t1 MTR_7g096310 49.635 137 63 3 58 190 25 159 7.74e-28 105
MS.gene005066.t1 MTR_7g103380 23.549 293 186 6 7 286 18 285 1.68e-22 94.7
MS.gene005066.t1 MTR_0002s0020 29.825 171 113 3 1 169 18 183 1.74e-18 83.6
MS.gene005066.t1 MTR_0113s0040 31.973 147 97 2 8 154 22 165 1.90e-18 83.6
MS.gene005066.t1 MTR_4g083970 26.141 241 137 7 54 285 82 290 1.70e-17 80.9
MS.gene005066.t1 MTR_5g010800 31.126 151 97 4 7 155 16 161 2.36e-17 80.5
MS.gene005066.t1 MTR_1g101390 25.887 282 176 11 10 286 30 283 1.70e-16 78.2
MS.gene005066.t1 MTR_1g079220 49.367 79 26 1 173 251 1 65 1.41e-15 70.5
MS.gene005066.t1 MTR_4g102770 31.034 145 98 2 10 154 21 163 2.23e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005066.t1 AT1G80110 43.636 275 131 7 11 284 4 255 6.40e-66 207
MS.gene005066.t1 AT2G02360 38.214 280 145 5 8 284 14 268 1.41e-61 196
MS.gene005066.t1 AT1G09155 41.197 284 152 7 11 285 3 280 6.11e-56 182
MS.gene005066.t1 AT2G02250 37.857 280 148 7 8 284 47 303 1.91e-54 179
MS.gene005066.t1 AT2G02240 37.589 282 153 5 8 288 61 320 1.92e-53 177
MS.gene005066.t1 AT2G02230 34.483 319 167 8 3 288 27 336 2.50e-53 177
MS.gene005066.t1 AT1G56240 39.146 281 160 5 11 284 4 280 8.53e-53 174
MS.gene005066.t1 AT1G56250 39.007 282 161 5 11 285 4 281 1.41e-49 166
MS.gene005066.t1 AT2G02340 34.375 288 162 7 5 284 33 301 7.80e-48 162
MS.gene005066.t1 AT2G02310 35.106 282 159 8 8 286 45 305 1.67e-44 153
MS.gene005066.t1 AT2G02350 32.979 282 163 7 7 284 23 282 3.37e-42 147
MS.gene005066.t1 AT2G02320 34.737 285 148 10 10 284 42 298 1.20e-39 140
MS.gene005066.t1 AT2G02300 32.414 290 146 9 7 286 33 282 8.20e-39 138
MS.gene005066.t1 AT5G24560 45.890 146 72 2 7 152 2 140 9.28e-37 130
MS.gene005066.t1 AT3G53000 26.460 291 175 7 10 287 23 287 1.47e-24 100
MS.gene005066.t1 AT2G02350 30.556 180 106 5 109 284 1 165 3.96e-18 80.5
MS.gene005066.t1 AT1G12710 29.878 164 109 3 10 173 30 187 6.45e-17 79.3
MS.gene005066.t1 AT1G63090 28.986 207 124 6 10 200 28 227 3.97e-16 77.0
MS.gene005066.t1 AT3G61060 28.767 146 97 3 10 153 27 167 6.88e-16 76.6
MS.gene005066.t1 AT5G52120 30.769 156 103 2 3 154 16 170 7.90e-16 76.3
MS.gene005066.t1 AT3G61060 27.397 146 100 2 10 153 27 168 1.60e-15 75.5
MS.gene005066.t1 AT1G12710 29.747 158 97 4 10 157 30 183 4.26e-12 65.9

Find 86 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATATGGCTCCGTCTTTC+TGG 0.113222 1.4:-64943512 MS.gene005066:CDS
TTCAAGATGATTGCGGTATT+TGG 0.206757 1.4:-64943638 MS.gene005066:CDS
TAAGCCGCATACTGAGTAAT+TGG 0.244954 1.4:+64943668 None:intergenic
AAGCACTAAAATTGTGTGTT+TGG 0.322198 1.4:-64943564 MS.gene005066:CDS
TGAAGAAGCTTAGCAACTTT+GGG 0.332813 1.4:+64943740 None:intergenic
TGAGCATTGTCGATGATGAT+AGG 0.336712 1.4:+64944189 None:intergenic
TGCCAACGCTCCTACCAAAA+AGG 0.348280 1.4:-64944238 MS.gene005066:CDS
TAGATCTCTCGCCATTGCTT+GGG 0.355736 1.4:-64943955 MS.gene005066:CDS
GTGCGTTGGCTTGAAATTCA+TGG 0.359165 1.4:-64943716 MS.gene005066:CDS
CTTAATCAATTGTCTTCCTT+AGG 0.364137 1.4:+64943299 None:intergenic
CTAGATCTCTCGCCATTGCT+TGG 0.374556 1.4:-64943956 MS.gene005066:CDS
AAGGGAAATTTCTTTCTTGA+AGG 0.377188 1.4:-64943335 MS.gene005066:CDS
ATAGGAACAAAGAACTAATA+TGG 0.377474 1.4:-64943526 MS.gene005066:CDS
GTGAAGAAGCTTAGCAACTT+TGG 0.379608 1.4:+64943739 None:intergenic
GGATTGCTGTGCCTGATTCC+AGG 0.382495 1.4:-64943908 MS.gene005066:intron
TGATGATAGGGCGCTCAGAT+AGG 0.392390 1.4:+64944202 None:intergenic
AGATGATGAAGTCGATGAAT+TGG 0.404952 1.4:+64944280 None:intergenic
CCGCTGATTCCGACGCCGTA+TGG 0.412845 1.4:-64944326 MS.gene005066:CDS
TGAAATGCAGAGCTTTCAAT+TGG 0.416329 1.4:-64944015 MS.gene005066:intron
GATGATGAAGTCGATGAATT+GGG 0.420088 1.4:+64944281 None:intergenic
AAGCCGCATACTGAGTAATT+GGG 0.424150 1.4:+64943669 None:intergenic
GCATAACCAAACCTGGAATC+AGG 0.428282 1.4:+64943897 None:intergenic
CGGAGTGGTACGAGATAGTA+TGG 0.433671 1.4:+64944395 None:intergenic
TAATATGGCTCCGTCTTTCT+GGG 0.439907 1.4:-64943511 MS.gene005066:CDS
TTGTTCCTATGTACCAAGCT+TGG 0.444587 1.4:+64943539 None:intergenic
CATCATCGACAATGCTCAAA+AGG 0.444946 1.4:-64944184 MS.gene005066:intron
CATCCTGTGGACTTGTTAGT+TGG 0.456770 1.4:-64943605 MS.gene005066:CDS
TGGATCCAAGCTTGGTACAT+AGG 0.466567 1.4:-64943544 MS.gene005066:CDS
CTAAGCTTCTTCACGTGCGT+TGG 0.466916 1.4:-64943730 MS.gene005066:CDS
GGTAAAATGCAAAACAGAAT+GGG 0.467299 1.4:-64944453 None:intergenic
ATTAGTGTTATCGAGATAGA+TGG 0.468630 1.4:-64943368 MS.gene005066:CDS
GGGAACGTTTGAAGAATTAC+CGG 0.469130 1.4:-64944433 MS.gene005066:CDS
ATGTCGCACAACAAAGTAGT+AGG 0.481595 1.4:-64943482 MS.gene005066:CDS
ATGGCGGCAATGCACCCTTC+CGG 0.486147 1.4:+64944414 None:intergenic
CCACTCCGGCTGACGTCGGC+AGG 0.500315 1.4:-64944380 MS.gene005066:CDS
ACGATGATCGATATTGCAAA+TGG 0.500644 1.4:-64943929 MS.gene005066:CDS
GAGCATTGTCGATGATGATA+GGG 0.502802 1.4:+64944190 None:intergenic
GAGAACCTGCCGACGTCAGC+CGG 0.503179 1.4:+64944375 None:intergenic
AGGTAAAATGCAAAACAGAA+TGG 0.506013 1.4:-64944454 None:intergenic
AGCGGCAGAACGGAATGTCT+TGG 0.509093 1.4:+64944344 None:intergenic
TTCTTTAATTTATGCCTCGA+AGG 0.519154 1.4:-64943404 MS.gene005066:CDS
GATGATAGGGCGCTCAGATA+GGG 0.525529 1.4:+64944203 None:intergenic
CGTCCTTGTGTGAGACGTGA+TGG 0.528932 1.4:-64943452 MS.gene005066:CDS
AGGAATAGAAGTTAGACCTA+AGG 0.534122 1.4:-64943315 MS.gene005066:CDS
TCAAGAAAGAAATTTCCCTT+CGG 0.536909 1.4:+64943338 None:intergenic
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 1.4:-64943431 MS.gene005066:CDS
TGGGTGGTTGGAGATTGAGA+TGG 0.542699 1.4:-64943432 MS.gene005066:CDS
AGTAATTGGGGACAAGGCAC+AGG 0.544142 1.4:+64943682 None:intergenic
GTAGGAGCGTTGGCAATGGA+AGG 0.561351 1.4:+64944246 None:intergenic
TTTCAATTGGATAGAAAGAG+TGG 0.567809 1.4:-64944002 MS.gene005066:CDS
AGATCTCTCGCCATTGCTTG+GGG 0.568943 1.4:-64943954 MS.gene005066:CDS
TGTGGACTTCTACACCTTCG+AGG 0.569696 1.4:+64943390 None:intergenic
TCTTGTGTTCAAGATGATTG+CGG 0.577737 1.4:-64943645 MS.gene005066:CDS
TGTGTGTTTGGATCCAAGCT+TGG 0.582832 1.4:-64943552 MS.gene005066:CDS
GTCCCCAATTACTCAGTATG+CGG 0.584074 1.4:-64943672 MS.gene005066:CDS
CTATCTCGATAACACTAATG+TGG 0.592924 1.4:+64943372 None:intergenic
GACTTGTTAGTTGGTGTCGA+AGG 0.594500 1.4:-64943596 MS.gene005066:CDS
ATCATCGTCACCCCAAGCAA+TGG 0.595008 1.4:+64943944 None:intergenic
CACCCATCACGTCTCACACA+AGG 0.595122 1.4:+64943449 None:intergenic
CCTGCCGACGTCAGCCGGAG+TGG 0.595334 1.4:+64944380 None:intergenic
TGTGAGACGTGATGGGTGGT+TGG 0.601299 1.4:-64943444 MS.gene005066:CDS
GAAGAAGCTTAGCAACTTTG+GGG 0.601922 1.4:+64943741 None:intergenic
CCATACGGCGTCGGAATCAG+CGG 0.608739 1.4:+64944326 None:intergenic
TTTGGTAGGAGCGTTGGCAA+TGG 0.610470 1.4:+64944242 None:intergenic
ACATACTAGTCCCAGAAAGA+CGG 0.611319 1.4:+64943501 None:intergenic
GATAGATGGTGATTTGCCGA+AGG 0.613865 1.4:-64943354 MS.gene005066:CDS
ATAGATGGTGATTTGCCGAA+GGG 0.616572 1.4:-64943353 MS.gene005066:CDS
CGTCGGAATCAGCGGCAGAA+CGG 0.619760 1.4:+64944334 None:intergenic
ACACCAACTAACAAGTCCAC+AGG 0.620063 1.4:+64943602 None:intergenic
CGTTTGAAGAATTACCGGAA+GGG 0.623415 1.4:-64944428 MS.gene005066:CDS
ACGGAGAAAATGATTCCATA+CGG 0.624466 1.4:+64944311 None:intergenic
ATGATGAAGTCGATGAATTG+GGG 0.626092 1.4:+64944282 None:intergenic
GTCCTTGTGTGAGACGTGAT+GGG 0.628973 1.4:-64943451 MS.gene005066:CDS
ACGTTTGAAGAATTACCGGA+AGG 0.633270 1.4:-64944429 MS.gene005066:CDS
AGCCGCATACTGAGTAATTG+GGG 0.640308 1.4:+64943670 None:intergenic
TGGATTTGAGAATCATCCTG+TGG 0.644402 1.4:-64943618 MS.gene005066:CDS
GGAGCGTTGGCAATGGAAGG+AGG 0.646074 1.4:+64944249 None:intergenic
AAAATGATTCCATACGGCGT+CGG 0.655224 1.4:+64944317 None:intergenic
ATACTGAGTAATTGGGGACA+AGG 0.658194 1.4:+64943676 None:intergenic
TGACGTCGGCAGGTTCTCCG+TGG 0.673421 1.4:-64944370 MS.gene005066:CDS
TGATGAAGTCGATGAATTGG+GGG 0.685586 1.4:+64944283 None:intergenic
CTTGTGTGAGACGTGATGGG+TGG 0.689727 1.4:-64943448 MS.gene005066:CDS
ACGGAATGTCTTGGAAACCA+CGG 0.690249 1.4:+64944353 None:intergenic
CGTACCACTCCGGCTGACGT+CGG 0.713269 1.4:-64944384 MS.gene005066:CDS
CATACTATCTCGTACCACTC+CGG 0.714669 1.4:-64944394 MS.gene005066:CDS
AGTGGTACGAGATAGTATGG+CGG 0.804735 1.4:+64944398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATAGAGACTAAAATT+TGG + chr1.4:64943968-64943987 None:intergenic 15.0%
!!! TAGAAACTGAATTTAATTTT+TGG - chr1.4:64943672-64943691 MS.gene005066:CDS 15.0%
! ATAGGAACAAAGAACTAATA+TGG - chr1.4:64944225-64944244 MS.gene005066:CDS 25.0%
! TATAAATACTCCATTTGTGT+TGG - chr1.4:64943980-64943999 MS.gene005066:CDS 25.0%
! TTGTCAATTATACGAGAAAT+TGG + chr1.4:64943614-64943633 None:intergenic 25.0%
AAGCACTAAAATTGTGTGTT+TGG - chr1.4:64944187-64944206 MS.gene005066:CDS 30.0%
AAGGGAAATTTCTTTCTTGA+AGG - chr1.4:64944416-64944435 MS.gene005066:CDS 30.0%
AATTTGGAAGTTGTAAACCA+AGG + chr1.4:64943952-64943971 None:intergenic 30.0%
ATAGTAAGAAAACACAGAGA+GGG - chr1.4:64943643-64943662 MS.gene005066:CDS 30.0%
ATTAGTGTTATCGAGATAGA+TGG - chr1.4:64944383-64944402 MS.gene005066:CDS 30.0%
ATTTGGAAGTTGTAAACCAA+GGG + chr1.4:64943951-64943970 None:intergenic 30.0%
TATAGTAAGAAAACACAGAG+AGG - chr1.4:64943642-64943661 MS.gene005066:CDS 30.0%
TCAAGAAAGAAATTTCCCTT+CGG + chr1.4:64944416-64944435 None:intergenic 30.0%
TCAATTATACGAGAAATTGG+AGG + chr1.4:64943611-64943630 None:intergenic 30.0%
TTTCAATTGGATAGAAAGAG+TGG - chr1.4:64943749-64943768 MS.gene005066:intron 30.0%
! TGAAATGATTTTGTTACCCT+TGG - chr1.4:64943932-64943951 MS.gene005066:CDS 30.0%
! TTCTTTAATTTATGCCTCGA+AGG - chr1.4:64944347-64944366 MS.gene005066:CDS 30.0%
!! ACACAATTTTAGTGCTTCTA+TGG + chr1.4:64944184-64944203 None:intergenic 30.0%
ACGATGATCGATATTGCAAA+TGG - chr1.4:64943822-64943841 MS.gene005066:intron 35.0%
ACGGAGAAAATGATTCCATA+CGG + chr1.4:64943443-64943462 None:intergenic 35.0%
AGATGATGAAGTCGATGAAT+TGG + chr1.4:64943474-64943493 None:intergenic 35.0%
AGGAATAGAAGTTAGACCTA+AGG - chr1.4:64944436-64944455 MS.gene005066:CDS 35.0%
ATACTCCATTTGTGTTGGAT+AGG - chr1.4:64943985-64944004 MS.gene005066:CDS 35.0%
ATGATGAAGTCGATGAATTG+GGG + chr1.4:64943472-64943491 None:intergenic 35.0%
ATTATACGAGAAATTGGAGG+AGG + chr1.4:64943608-64943627 None:intergenic 35.0%
CTATCTCGATAACACTAATG+TGG + chr1.4:64944382-64944401 None:intergenic 35.0%
GATGATGAAGTCGATGAATT+GGG + chr1.4:64943473-64943492 None:intergenic 35.0%
TCTTGTGTTCAAGATGATTG+CGG - chr1.4:64944106-64944125 MS.gene005066:intron 35.0%
TGAAATGCAGAGCTTTCAAT+TGG - chr1.4:64943736-64943755 MS.gene005066:CDS 35.0%
TGAAGAAGCTTAGCAACTTT+GGG + chr1.4:64944014-64944033 None:intergenic 35.0%
TTCAAGATGATTGCGGTATT+TGG - chr1.4:64944113-64944132 MS.gene005066:intron 35.0%
AAAATGATTCCATACGGCGT+CGG + chr1.4:64943437-64943456 None:intergenic 40.0%
AAGCCGCATACTGAGTAATT+GGG + chr1.4:64944085-64944104 None:intergenic 40.0%
ACATACTAGTCCCAGAAAGA+CGG + chr1.4:64944253-64944272 None:intergenic 40.0%
ACGTTTGAAGAATTACCGGA+AGG - chr1.4:64943322-64943341 MS.gene005066:CDS 40.0%
ATACTGAGTAATTGGGGACA+AGG + chr1.4:64944078-64944097 None:intergenic 40.0%
ATGTCGCACAACAAAGTAGT+AGG - chr1.4:64944269-64944288 MS.gene005066:CDS 40.0%
CATCATCGACAATGCTCAAA+AGG - chr1.4:64943567-64943586 MS.gene005066:CDS 40.0%
CGTTTGAAGAATTACCGGAA+GGG - chr1.4:64943323-64943342 MS.gene005066:CDS 40.0%
GAAGAAGCTTAGCAACTTTG+GGG + chr1.4:64944013-64944032 None:intergenic 40.0%
GGGAACGTTTGAAGAATTAC+CGG - chr1.4:64943318-64943337 MS.gene005066:CDS 40.0%
GTGAAGAAGCTTAGCAACTT+TGG + chr1.4:64944015-64944034 None:intergenic 40.0%
GTTTCAAGCATAACCAAACC+TGG + chr1.4:64943864-64943883 None:intergenic 40.0%
TAAGCCGCATACTGAGTAAT+TGG + chr1.4:64944086-64944105 None:intergenic 40.0%
TAATATGGCTCCGTCTTTCT+GGG - chr1.4:64944240-64944259 MS.gene005066:CDS 40.0%
TGATGAAGTCGATGAATTGG+GGG + chr1.4:64943471-64943490 None:intergenic 40.0%
TGGATTTGAGAATCATCCTG+TGG - chr1.4:64944133-64944152 MS.gene005066:intron 40.0%
TTGTTCCTATGTACCAAGCT+TGG + chr1.4:64944215-64944234 None:intergenic 40.0%
! ATAGATGGTGATTTGCCGAA+GGG - chr1.4:64944398-64944417 MS.gene005066:CDS 40.0%
! GAGCATTGTCGATGATGATA+GGG + chr1.4:64943564-64943583 None:intergenic 40.0%
! TGAGCATTGTCGATGATGAT+AGG + chr1.4:64943565-64943584 None:intergenic 40.0%
!! AGAAAGAGAGCCTTTTTGGT+AGG + chr1.4:64943526-64943545 None:intergenic 40.0%
ACACCAACTAACAAGTCCAC+AGG + chr1.4:64944152-64944171 None:intergenic 45.0%
ACGGAATGTCTTGGAAACCA+CGG + chr1.4:64943401-64943420 None:intergenic 45.0%
AGCCGCATACTGAGTAATTG+GGG + chr1.4:64944084-64944103 None:intergenic 45.0%
AGTGGTACGAGATAGTATGG+CGG + chr1.4:64943356-64943375 None:intergenic 45.0%
CATACTATCTCGTACCACTC+CGG - chr1.4:64943357-64943376 MS.gene005066:CDS 45.0%
CTAATATGGCTCCGTCTTTC+TGG - chr1.4:64944239-64944258 MS.gene005066:CDS 45.0%
GCATAACCAAACCTGGAATC+AGG + chr1.4:64943857-64943876 None:intergenic 45.0%
GGGAACCTATCCAACACAAA+TGG + chr1.4:64943993-64944012 None:intergenic 45.0%
GTCCCCAATTACTCAGTATG+CGG - chr1.4:64944079-64944098 MS.gene005066:intron 45.0%
TAGATCTCTCGCCATTGCTT+GGG - chr1.4:64943796-64943815 MS.gene005066:intron 45.0%
TGGATCCAAGCTTGGTACAT+AGG - chr1.4:64944207-64944226 MS.gene005066:CDS 45.0%
TGTGTGTTTGGATCCAAGCT+TGG - chr1.4:64944199-64944218 MS.gene005066:CDS 45.0%
! GATAGATGGTGATTTGCCGA+AGG - chr1.4:64944397-64944416 MS.gene005066:CDS 45.0%
! GGTGAGAAAGAGAGCCTTTT+TGG + chr1.4:64943530-64943549 None:intergenic 45.0%
!! CATCCTGTGGACTTGTTAGT+TGG - chr1.4:64944146-64944165 MS.gene005066:intron 45.0%
!! GACTTGTTAGTTGGTGTCGA+AGG - chr1.4:64944155-64944174 MS.gene005066:intron 45.0%
!! GTGCGTTGGCTTGAAATTCA+TGG - chr1.4:64944035-64944054 MS.gene005066:intron 45.0%
AGATCTCTCGCCATTGCTTG+GGG - chr1.4:64943797-64943816 MS.gene005066:intron 50.0%
AGTAATTGGGGACAAGGCAC+AGG + chr1.4:64944072-64944091 None:intergenic 50.0%
ATCATCGTCACCCCAAGCAA+TGG + chr1.4:64943810-64943829 None:intergenic 50.0%
CGATGAATTGGGGGTCAGAA+CGG + chr1.4:64943462-64943481 None:intergenic 50.0%
CGGAGTGGTACGAGATAGTA+TGG + chr1.4:64943359-64943378 None:intergenic 50.0%
CTAAGCTTCTTCACGTGCGT+TGG - chr1.4:64944021-64944040 MS.gene005066:intron 50.0%
CTAGATCTCTCGCCATTGCT+TGG - chr1.4:64943795-64943814 MS.gene005066:intron 50.0%
GGGTGGTTGGAGATTGAGAT+GGG - chr1.4:64944320-64944339 MS.gene005066:CDS 50.0%
GTCCTTGTGTGAGACGTGAT+GGG - chr1.4:64944300-64944319 MS.gene005066:CDS 50.0%
TGCCAACGCTCCTACCAAAA+AGG - chr1.4:64943513-64943532 MS.gene005066:CDS 50.0%
TGGGTGGTTGGAGATTGAGA+TGG - chr1.4:64944319-64944338 MS.gene005066:CDS 50.0%
TGTGGACTTCTACACCTTCG+AGG + chr1.4:64944364-64944383 None:intergenic 50.0%
! GATGATAGGGCGCTCAGATA+GGG + chr1.4:64943551-64943570 None:intergenic 50.0%
! TGATGATAGGGCGCTCAGAT+AGG + chr1.4:64943552-64943571 None:intergenic 50.0%
!! AGCCTTTTTGGTAGGAGCGT+TGG + chr1.4:64943518-64943537 None:intergenic 50.0%
!! TTTGGTAGGAGCGTTGGCAA+TGG + chr1.4:64943512-64943531 None:intergenic 50.0%
AGCGGCAGAACGGAATGTCT+TGG + chr1.4:64943410-64943429 None:intergenic 55.0%
CACCCATCACGTCTCACACA+AGG + chr1.4:64944305-64944324 None:intergenic 55.0%
CGTCCTTGTGTGAGACGTGA+TGG - chr1.4:64944299-64944318 MS.gene005066:CDS 55.0%
GCTGTGCCTGATTCCAGGTT+TGG - chr1.4:64943848-64943867 MS.gene005066:intron 55.0%
GGATTGCTGTGCCTGATTCC+AGG - chr1.4:64943843-64943862 MS.gene005066:intron 55.0%
! CTTGTGTGAGACGTGATGGG+TGG - chr1.4:64944303-64944322 MS.gene005066:CDS 55.0%
!! GTAGGAGCGTTGGCAATGGA+AGG + chr1.4:64943508-64943527 None:intergenic 55.0%
!! TGTGAGACGTGATGGGTGGT+TGG - chr1.4:64944307-64944326 MS.gene005066:CDS 55.0%
ATGGCGGCAATGCACCCTTC+CGG + chr1.4:64943340-64943359 None:intergenic 60.0%
CGTCGGAATCAGCGGCAGAA+CGG + chr1.4:64943420-64943439 None:intergenic 60.0%
! CCATACGGCGTCGGAATCAG+CGG + chr1.4:64943428-64943447 None:intergenic 60.0%
!! GGAGCGTTGGCAATGGAAGG+AGG + chr1.4:64943505-64943524 None:intergenic 60.0%
CGTACCACTCCGGCTGACGT+CGG - chr1.4:64943367-64943386 MS.gene005066:CDS 65.0%
GAGAACCTGCCGACGTCAGC+CGG + chr1.4:64943379-64943398 None:intergenic 65.0%
TGACGTCGGCAGGTTCTCCG+TGG - chr1.4:64943381-64943400 MS.gene005066:CDS 65.0%
!! CCGCTGATTCCGACGCCGTA+TGG - chr1.4:64943425-64943444 MS.gene005066:CDS 65.0%
CCACTCCGGCTGACGTCGGC+AGG - chr1.4:64943371-64943390 MS.gene005066:CDS 75.0%
CCTGCCGACGTCAGCCGGAG+TGG + chr1.4:64943374-64943393 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 64943304 64944469 64943304 ID=MS.gene005066
chr1.4 mRNA 64943304 64944469 64943304 ID=MS.gene005066.t1;Parent=MS.gene005066
chr1.4 exon 64944185 64944469 64944185 ID=MS.gene005066.t1.exon1;Parent=MS.gene005066.t1
chr1.4 CDS 64944185 64944469 64944185 ID=cds.MS.gene005066.t1;Parent=MS.gene005066.t1
chr1.4 exon 64943909 64944027 64943909 ID=MS.gene005066.t1.exon2;Parent=MS.gene005066.t1
chr1.4 CDS 64943909 64944027 64943909 ID=cds.MS.gene005066.t1;Parent=MS.gene005066.t1
chr1.4 exon 64943304 64943766 64943304 ID=MS.gene005066.t1.exon3;Parent=MS.gene005066.t1
chr1.4 CDS 64943304 64943766 64943304 ID=cds.MS.gene005066.t1;Parent=MS.gene005066.t1
Gene Sequence

>MS.gene005066

ATGCAAAACAGAATGGGAACGTTTGAAGAATTACCGGAAGGGTGCATTGCCGCCATACTATCTCGTACCACTCCGGCTGACGTCGGCAGGTTCTCCGTGGTTTCCAAGACATTCCGTTCTGCCGCTGATTCCGACGCCGTATGGAATCATTTTCTCCGTTCTGACCCCCAATTCATCGACTTCATCATCTCACACTCTCCTCCTTCCATTGCCAACGCTCCTACCAAAAAGGCTCTCTTTCTCACCCTATCTGAGCGCCCTATCATCATCGACAATGCTCAAAAGGTATTCTTCTTTATAACCTCCTCCAATTTCTCGTATAATTGACAATTTGACTGTATAGTAAGAAAACACAGAGAGGGAGAAAATAGAAACTGAATTTAATTTTTGGATTTTGAAATGAAAATGCTAATAAATAAGTTATGTATATGTTGAAATGCAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAAGTGTTATATGCTTGCTGCTAGATCTCTCGCCATTGCTTGGGGTGACGATGATCGATATTGCAAATGGATTGCTGTGCCTGATTCCAGGTTTGGTTATGCTTGAAACTATCAAAGTAACTTGTTAACTGAGAATCTTATCACAATCAATTACACTTGAAATGATTTTGTTACCCTTGGTTTACAACTTCCAAATTTTAGTCTCTATAAATACTCCATTTGTGTTGGATAGGTTCCCCAAAGTTGCTAAGCTTCTTCACGTGCGTTGGCTTGAAATTCATGGAAAGATAAACACCTGTGCCTTGTCCCCAATTACTCAGTATGCGGCTTATCTTGTGTTCAAGATGATTGCGGTATTTGGATTTGAGAATCATCCTGTGGACTTGTTAGTTGGTGTCGAAGGTAGCCATAGAAGCACTAAAATTGTGTGTTTGGATCCAAGCTTGGTACATAGGAACAAAGAACTAATATGGCTCCGTCTTTCTGGGACTAGTATGTCGCACAACAAAGTAGTAGGATTGCGACGTCCTTGTGTGAGACGTGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCTTTAATTTATGCCTCGAAGGTGTAGAAGTCCACATTAGTGTTATCGAGATAGATGGTGATTTGCCGAAGGGAAATTTCTTTCTTGAAGGAATAGAAGTTAGACCTAAGGAAGACAATTGA
Protein sequence

>MS.gene005066.t1

MQNRMGTFEELPEGCIAAILSRTTPADVGRFSVVSKTFRSAADSDAVWNHFLRSDPQFIDFIISHSPPSIANAPTKKALFLTLSERPIIIDNAQKSFQLDRKSGKKCYMLAARSLAIAWGDDDRYCKWIAVPDSRFPKVAKLLHVRWLEIHGKINTCALSPITQYAAYLVFKMIAVFGFENHPVDLLVGVEGSHRSTKIVCLDPSLVHRNKELIWLRLSGTSMSHNKVVGLRRPCVRRDGWLEIEMGEFFNLCLEGVEVHISVIEIDGDLPKGNFFLEGIEVRPKEDN