AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005034

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005034.t1 MTR_1g079400 89.831 295 15 1 1 295 1 280 0.0 511
MS.gene005034.t1 MTR_1g079410 76.125 289 52 2 6 294 2 273 5.86e-160 446
MS.gene005034.t1 MTR_1g079260 54.138 290 103 4 13 294 5 272 9.78e-102 299
MS.gene005034.t1 MTR_1g079370 54.225 284 107 3 12 294 4 265 4.18e-98 289
MS.gene005034.t1 MTR_1g100597 52.921 291 105 4 13 294 5 272 4.79e-96 284
MS.gene005034.t1 MTR_1g079460 53.169 284 113 3 11 294 3 266 5.12e-93 276
MS.gene005034.t1 MTR_1g079380 53.521 284 109 3 12 294 4 265 1.13e-90 271
MS.gene005034.t1 MTR_1g079200 51.568 287 107 5 13 294 5 264 1.23e-87 263
MS.gene005034.t1 MTR_1g079180 52.797 286 106 6 13 294 5 265 7.10e-87 261
MS.gene005034.t1 MTR_1g079230 49.653 288 116 4 15 294 7 273 2.61e-84 254
MS.gene005034.t1 MTR_1g100613 50.000 262 97 4 28 277 5 244 7.50e-79 239
MS.gene005034.t1 MTR_3g452600 47.887 284 123 5 11 294 9 267 5.84e-78 238
MS.gene005034.t1 MTR_1g079850 46.441 295 127 4 13 294 5 281 4.68e-76 234
MS.gene005034.t1 MTR_1g079140 44.013 309 148 4 5 295 6 307 1.15e-74 231
MS.gene005034.t1 MTR_1g026510 44.631 298 132 6 12 294 4 283 6.48e-74 229
MS.gene005034.t1 MTR_2g079100 46.207 290 123 4 5 291 2 261 4.11e-72 223
MS.gene005034.t1 MTR_1g079250 45.946 296 126 6 12 294 4 278 8.42e-72 223
MS.gene005034.t1 MTR_3g006850 43.202 331 125 9 5 294 7 315 2.99e-70 220
MS.gene005034.t1 MTR_3g450990 44.371 302 123 7 11 294 9 283 1.09e-68 215
MS.gene005034.t1 MTR_7g112550 41.343 283 156 8 15 295 10 284 3.40e-61 196
MS.gene005034.t1 MTR_1g083580 36.486 296 153 6 12 294 8 281 3.96e-61 196
MS.gene005034.t1 MTR_1g079350 41.438 292 140 7 13 294 5 275 3.33e-59 190
MS.gene005034.t1 MTR_1g079340 44.218 294 136 8 15 294 46 325 4.53e-58 189
MS.gene005034.t1 MTR_7g096300 44.928 276 114 9 11 279 3 247 4.71e-54 187
MS.gene005034.t1 MTR_7g112560 36.491 285 153 5 12 295 1 258 1.65e-53 175
MS.gene005034.t1 MTR_1g078470 50.549 182 68 4 113 294 25 184 4.32e-45 151
MS.gene005034.t1 MTR_4g023570 34.507 284 138 6 12 294 1 237 4.48e-44 150
MS.gene005034.t1 MTR_1g079240 43.367 196 83 4 99 294 12 179 8.00e-39 135
MS.gene005034.t1 MTR_1g079130 40.104 192 102 5 113 294 1 189 1.27e-35 127
MS.gene005034.t1 MTR_1g076870 46.667 135 71 1 140 274 2 135 6.41e-29 108
MS.gene005034.t1 MTR_1g079350 41.139 158 81 4 12 164 4 154 4.88e-26 102
MS.gene005034.t1 MTR_2g042540 47.573 103 52 1 13 115 5 105 1.24e-22 91.3
MS.gene005034.t1 MTR_7g096310 44.167 120 59 3 79 194 44 159 5.95e-22 90.5
MS.gene005034.t1 MTR_1g078460 55.172 87 35 1 13 99 68 150 2.94e-21 88.2
MS.gene005034.t1 MTR_7g103380 26.056 284 183 8 15 293 22 283 4.98e-21 90.9
MS.gene005034.t1 MTR_1g079210 42.143 140 50 3 142 268 8 129 9.89e-20 83.6
MS.gene005034.t1 MTR_3g058640 40.336 119 52 2 140 258 7 106 2.91e-16 73.6
MS.gene005034.t1 MTR_4g102770 32.639 144 95 2 15 158 22 163 4.80e-15 74.3
MS.gene005034.t1 MTR_1g101390 32.639 144 94 2 15 158 31 171 6.03e-15 73.9
MS.gene005034.t1 MTR_0002s0020 30.405 148 99 2 15 159 25 171 6.76e-15 73.9
MS.gene005034.t1 MTR_0113s0040 27.811 169 117 3 9 177 19 182 4.46e-14 71.2
MS.gene005034.t1 MTR_5g010800 28.082 146 100 3 15 159 20 161 1.89e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005034.t1 AT2G02360 41.844 282 131 6 15 293 17 268 1.77e-69 217
MS.gene005034.t1 AT2G02230 36.364 308 163 7 13 294 33 333 4.41e-63 202
MS.gene005034.t1 AT2G02250 38.542 288 148 6 8 293 43 303 3.98e-62 199
MS.gene005034.t1 AT2G02340 40.702 285 145 5 15 295 39 303 1.59e-61 197
MS.gene005034.t1 AT2G02240 38.328 287 149 7 8 293 57 316 9.59e-60 193
MS.gene005034.t1 AT1G80110 39.286 280 141 5 15 293 4 255 3.22e-57 185
MS.gene005034.t1 AT2G02350 36.860 293 144 7 10 293 22 282 2.89e-52 173
MS.gene005034.t1 AT1G09155 37.241 290 162 6 14 294 2 280 2.01e-50 168
MS.gene005034.t1 AT1G56250 38.488 291 159 6 14 295 3 282 5.52e-50 167
MS.gene005034.t1 AT1G56240 38.754 289 157 7 14 293 3 280 4.77e-48 162
MS.gene005034.t1 AT2G02310 34.021 291 163 5 8 295 41 305 8.73e-47 159
MS.gene005034.t1 AT2G02320 33.569 283 157 6 15 293 43 298 6.08e-43 149
MS.gene005034.t1 AT5G24560 38.756 209 107 4 15 222 6 194 7.53e-41 140
MS.gene005034.t1 AT2G02300 35.052 291 134 9 15 295 37 282 5.37e-40 141
MS.gene005034.t1 AT2G02350 32.632 190 94 6 113 293 1 165 5.84e-21 88.2
MS.gene005034.t1 AT3G53000 26.316 285 180 9 15 293 24 284 2.02e-20 89.4
MS.gene005034.t1 AT3G61060 30.986 142 95 2 15 156 28 166 3.54e-14 71.6
MS.gene005034.t1 AT5G52120 30.921 152 100 2 12 159 21 171 5.15e-14 71.2
MS.gene005034.t1 AT1G63090 32.414 145 94 2 15 159 29 169 2.38e-13 69.3
MS.gene005034.t1 AT3G61060 29.577 142 98 1 15 156 28 167 4.02e-13 68.9
MS.gene005034.t1 AT1G12710 30.345 145 97 2 15 159 31 171 5.90e-13 68.2

Find 63 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTCTCTATCATCATATTC+TGG 0.177035 1.4:+64196242 None:intergenic
CATTTATACGCATAGTTATT+TGG 0.210406 1.4:+64196327 None:intergenic
CAAATAACTATGCGTATAAA+TGG 0.243746 1.4:-64196326 MS.gene005034:CDS
ATGGGAGAATTCTTTAATTC+AGG 0.258142 1.4:-64196155 MS.gene005034:CDS
TCTCAACAACTTCATCTTCT+AGG 0.271024 1.4:+64196132 None:intergenic
CATAATAGACAATGGTAAAA+AGG 0.288236 1.4:-64196906 MS.gene005034:intron
TTACCATTGTCTATTATGAT+AGG 0.311639 1.4:+64196911 None:intergenic
GGGTGACACTCCTCAATATT+GGG 0.314388 1.4:-64196656 MS.gene005034:CDS
CAAGTAACTGTTGGTGTACT+TGG 0.315902 1.4:-64196299 MS.gene005034:CDS
TAGAGATATCTCCATTGCTT+TGG 0.330371 1.4:-64196677 MS.gene005034:CDS
CCGCTAAATCAGATACTGTT+TGG 0.340386 1.4:-64197048 MS.gene005034:CDS
AGTGATATATAGAGACTTCT+TGG 0.347188 1.4:+64196946 None:intergenic
TAAAATTCAGAGCTTTCAAT+TGG 0.366503 1.4:-64196737 MS.gene005034:intron
TGGGTGACACTCCTCAATAT+TGG 0.371925 1.4:-64196657 MS.gene005034:CDS
AGAGATATCTCCATTGCTTT+GGG 0.391567 1.4:-64196676 MS.gene005034:CDS
CGCTAAATCAGATACTGTTT+GGG 0.401376 1.4:-64197047 MS.gene005034:CDS
AAATGTGGTTTCATTCTTGA+AGG 0.403833 1.4:-64196077 MS.gene005034:CDS
TTCAAGATGATCAATGCCTT+TGG 0.405685 1.4:-64196395 MS.gene005034:CDS
GTTCTCTATCATCATATTCT+GGG 0.423782 1.4:+64196243 None:intergenic
CTAGGCTTCGTATAGTGTGC+TGG 0.425024 1.4:-64196487 MS.gene005034:CDS
AGCTGCATATTGAGTATTTG+AGG 0.429923 1.4:+64196427 None:intergenic
GAGTTAACTGTGGGTGTACT+TGG 0.452070 1.4:-64196353 MS.gene005034:CDS
TTAGGATCTGACCTGGAGTC+TGG 0.458584 1.4:+64196619 None:intergenic
GAACGAGATGACGAGTTTCA+AGG 0.463915 1.4:-64196224 MS.gene005034:CDS
TAGGCTCTCACTTGTTTGCA+AGG 0.484029 1.4:-64197083 MS.gene005034:CDS
GAGAGCCTACATGAATCAAC+TGG 0.485941 1.4:+64197097 None:intergenic
GTGTGCTGGTTTGCATTTGA+AGG 0.491002 1.4:-64196473 MS.gene005034:CDS
CCAAACAGTATCTGATTTAG+CGG 0.494554 1.4:+64197048 None:intergenic
AGTTGTATGCGACAATATCT+TGG 0.496653 1.4:+64197120 None:intergenic
CAAACAAAGAGGAAGCAGAC+TGG 0.504530 1.4:+64196981 None:intergenic
ATGATTGAGATCAAATCAGA+TGG 0.512192 1.4:+64197013 None:intergenic
GACCTGGAGTCTGGTAGGAT+TGG 0.514805 1.4:+64196628 None:intergenic
TAGAGACTTCTTGGAGGGAG+AGG 0.515847 1.4:+64196955 None:intergenic
CCAGATTCAGAGAAGTTGCT+AGG 0.515868 1.4:-64196505 MS.gene005034:intron
ACACTCCTCAATATTGGGAT+TGG 0.518790 1.4:-64196651 MS.gene005034:CDS
AGGCTCTCACTTGTTTGCAA+GGG 0.530749 1.4:-64197082 MS.gene005034:CDS
AAACAAAGAGGAAGCAGACT+GGG 0.536095 1.4:+64196982 None:intergenic
GGCCAATCCTACCAGACTCC+AGG 0.549409 1.4:-64196630 MS.gene005034:intron
ATGGATATGAAAACCGAAGA+AGG 0.550332 1.4:-64197181 MS.gene005034:CDS
CATTGTCTATTATGATAGGA+TGG 0.555364 1.4:+64196915 None:intergenic
ATCTTGGCAATGCATCCCTC+CGG 0.558404 1.4:+64197136 None:intergenic
GATATATAGAGACTTCTTGG+AGG 0.564443 1.4:+64196949 None:intergenic
AGGAGTGTCACCCAAAGCAA+TGG 0.570589 1.4:+64196666 None:intergenic
AGGAATTTCATCAAAACCAA+AGG 0.577378 1.4:+64196379 None:intergenic
ATTGGCCAATCCCAATATTG+AGG 0.587150 1.4:+64196646 None:intergenic
AGAGGTGGTCATTCAAAATG+TGG 0.588995 1.4:-64196092 MS.gene005034:CDS
AGAAGATGAAGTTGTTGAGA+TGG 0.589182 1.4:-64196129 MS.gene005034:CDS
AATGGAAAGCAAGTAACTGT+TGG 0.589683 1.4:-64196308 MS.gene005034:CDS
AGACTTCTTGGAGGGAGAGG+TGG 0.591367 1.4:+64196958 None:intergenic
GATCTGACCTGGAGTCTGGT+AGG 0.592034 1.4:+64196623 None:intergenic
ACACCCACAGTTAACTCGAT+AGG 0.599349 1.4:+64196359 None:intergenic
GAAGATGAAGTTGTTGAGAT+GGG 0.607457 1.4:-64196128 MS.gene005034:CDS
ATGGGTGCACTTGAGAATAG+AGG 0.609253 1.4:-64196110 MS.gene005034:CDS
CAACTCCAGTTGATTCATGT+AGG 0.611940 1.4:-64197102 MS.gene005034:CDS
GGGAGAGGTGGCAAACAAAG+AGG 0.613458 1.4:+64196970 None:intergenic
ATATATAGAGACTTCTTGGA+GGG 0.621304 1.4:+64196950 None:intergenic
TGTGCTGGTTTGCATTTGAA+GGG 0.624273 1.4:-64196472 MS.gene005034:CDS
ATTCCTATCGAGTTAACTGT+GGG 0.634010 1.4:-64196362 MS.gene005034:CDS
CATCCTATCATAATAGACAA+TGG 0.639517 1.4:-64196914 MS.gene005034:CDS
TGATTGAGATCAAATCAGAT+GGG 0.649582 1.4:+64197014 None:intergenic
AATTCCTATCGAGTTAACTG+TGG 0.659838 1.4:-64196363 MS.gene005034:CDS
GGTGCACTTGAGAATAGAGG+TGG 0.690840 1.4:-64196107 MS.gene005034:CDS
TTTCAATTGGAGAAACAGAG+TGG 0.693660 1.4:-64196724 MS.gene005034:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATCTGAACTATTTAAA+TGG - chr1.4:64196467-64196486 MS.gene005034:CDS 15.0%
!! TTAGTAAAGAAAATCTAATT+AGG + chr1.4:64196635-64196654 None:intergenic 15.0%
!! AAATATCAACCAAAAATGTT+TGG - chr1.4:64196962-64196981 MS.gene005034:CDS 20.0%
! AGTAAAAATCGAAACTGATT+TGG + chr1.4:64196371-64196390 None:intergenic 25.0%
! CAAATAACTATGCGTATAAA+TGG - chr1.4:64196907-64196926 MS.gene005034:CDS 25.0%
! CATAATAGACAATGGTAAAA+AGG - chr1.4:64196327-64196346 MS.gene005034:CDS 25.0%
! CATTTATACGCATAGTTATT+TGG + chr1.4:64196909-64196928 None:intergenic 25.0%
! TAAAATTCAGAGCTTTCAAT+TGG - chr1.4:64196496-64196515 MS.gene005034:CDS 25.0%
! TTACCATTGTCTATTATGAT+AGG + chr1.4:64196325-64196344 None:intergenic 25.0%
!!! TATCATGTTTTTTCCTTCTT+CGG + chr1.4:64196068-64196087 None:intergenic 25.0%
AAATGTGGTTTCATTCTTGA+AGG - chr1.4:64197156-64197175 MS.gene005034:CDS 30.0%
AGAAGGAAAAAACATGATAG+AGG - chr1.4:64196069-64196088 MS.gene005034:CDS 30.0%
AGGAATTTCATCAAAACCAA+AGG + chr1.4:64196857-64196876 None:intergenic 30.0%
AGTGATATATAGAGACTTCT+TGG + chr1.4:64196290-64196309 None:intergenic 30.0%
ATATATAGAGACTTCTTGGA+GGG + chr1.4:64196286-64196305 None:intergenic 30.0%
ATCAACCAAAAATGTTTGGT+TGG - chr1.4:64196966-64196985 MS.gene005034:CDS 30.0%
ATGATTGAGATCAAATCAGA+TGG + chr1.4:64196223-64196242 None:intergenic 30.0%
ATGGGAGAATTCTTTAATTC+AGG - chr1.4:64197078-64197097 MS.gene005034:CDS 30.0%
CATCCTATCATAATAGACAA+TGG - chr1.4:64196319-64196338 MS.gene005034:CDS 30.0%
CATTGTCTATTATGATAGGA+TGG + chr1.4:64196321-64196340 None:intergenic 30.0%
GTTCTCTATCATCATATTCT+GGG + chr1.4:64196993-64197012 None:intergenic 30.0%
TGATTGAGATCAAATCAGAT+GGG + chr1.4:64196222-64196241 None:intergenic 30.0%
!!! AATGAGAAGTGATGGATTTT+TGG - chr1.4:64197047-64197066 MS.gene005034:CDS 30.0%
!!! ACTTGTATTTTTTCTCGCAT+TGG - chr1.4:64196657-64196676 MS.gene005034:CDS 30.0%
!!! TTGAAAGCTCTGAATTTTAG+TGG + chr1.4:64196495-64196514 None:intergenic 30.0%
AATCTAATTAGGATCTGACC+TGG + chr1.4:64196624-64196643 None:intergenic 35.0%
AATGGAAAGCAAGTAACTGT+TGG - chr1.4:64196925-64196944 MS.gene005034:CDS 35.0%
AATTCCTATCGAGTTAACTG+TGG - chr1.4:64196870-64196889 MS.gene005034:intron 35.0%
AGAAGATGAAGTTGTTGAGA+TGG - chr1.4:64197104-64197123 MS.gene005034:CDS 35.0%
AGAGATATCTCCATTGCTTT+GGG - chr1.4:64196557-64196576 MS.gene005034:intron 35.0%
AGCTGCATATTGAGTATTTG+AGG + chr1.4:64196809-64196828 None:intergenic 35.0%
AGTTGTATGCGACAATATCT+TGG + chr1.4:64196116-64196135 None:intergenic 35.0%
ATGGATATGAAAACCGAAGA+AGG - chr1.4:64196052-64196071 MS.gene005034:CDS 35.0%
ATTCCTATCGAGTTAACTGT+GGG - chr1.4:64196871-64196890 MS.gene005034:intron 35.0%
CCAAACAGTATCTGATTTAG+CGG + chr1.4:64196188-64196207 None:intergenic 35.0%
CGCTAAATCAGATACTGTTT+GGG - chr1.4:64196186-64196205 MS.gene005034:CDS 35.0%
CGTTCAAAAATGAGAAGTGA+TGG - chr1.4:64197039-64197058 MS.gene005034:CDS 35.0%
CGTTCTCTATCATCATATTC+TGG + chr1.4:64196994-64197013 None:intergenic 35.0%
GAAGATGAAGTTGTTGAGAT+GGG - chr1.4:64197105-64197124 MS.gene005034:CDS 35.0%
GATATATAGAGACTTCTTGG+AGG + chr1.4:64196287-64196306 None:intergenic 35.0%
TAGAGATATCTCCATTGCTT+TGG - chr1.4:64196556-64196575 MS.gene005034:intron 35.0%
TCTCAACAACTTCATCTTCT+AGG + chr1.4:64197104-64197123 None:intergenic 35.0%
TTCAAGATGATCAATGCCTT+TGG - chr1.4:64196838-64196857 MS.gene005034:intron 35.0%
TTTCAATTGGAGAAACAGAG+TGG - chr1.4:64196509-64196528 MS.gene005034:intron 35.0%
! AAACATGATAGAGGTTTTGC+CGG - chr1.4:64196078-64196097 MS.gene005034:CDS 35.0%
!! GGATTTTTGGAGATCAAGAT+GGG - chr1.4:64197060-64197079 MS.gene005034:CDS 35.0%
!! TGGATTTTTGGAGATCAAGA+TGG - chr1.4:64197059-64197078 MS.gene005034:CDS 35.0%
AAACAAAGAGGAAGCAGACT+GGG + chr1.4:64196254-64196273 None:intergenic 40.0%
ACACTCCTCAATATTGGGAT+TGG - chr1.4:64196582-64196601 MS.gene005034:intron 40.0%
AGAGGTGGTCATTCAAAATG+TGG - chr1.4:64197141-64197160 MS.gene005034:CDS 40.0%
ATTGGCCAATCCCAATATTG+AGG + chr1.4:64196590-64196609 None:intergenic 40.0%
CAAGTAACTGTTGGTGTACT+TGG - chr1.4:64196934-64196953 MS.gene005034:CDS 40.0%
CCGCTAAATCAGATACTGTT+TGG - chr1.4:64196185-64196204 MS.gene005034:CDS 40.0%
! CAACTCCAGTTGATTCATGT+AGG - chr1.4:64196131-64196150 MS.gene005034:CDS 40.0%
! TGGGTCCAACCAAACATTTT+TGG + chr1.4:64196974-64196993 None:intergenic 40.0%
!! TGTGCTGGTTTGCATTTGAA+GGG - chr1.4:64196761-64196780 MS.gene005034:intron 40.0%
ACACCCACAGTTAACTCGAT+AGG + chr1.4:64196877-64196896 None:intergenic 45.0%
AGGCTCTCACTTGTTTGCAA+GGG - chr1.4:64196151-64196170 MS.gene005034:CDS 45.0%
ATGGGTGCACTTGAGAATAG+AGG - chr1.4:64197123-64197142 MS.gene005034:CDS 45.0%
CAAACAAAGAGGAAGCAGAC+TGG + chr1.4:64196255-64196274 None:intergenic 45.0%
CCAGATTCAGAGAAGTTGCT+AGG - chr1.4:64196728-64196747 MS.gene005034:CDS 45.0%
CCTAGCAACTTCTCTGAATC+TGG + chr1.4:64196731-64196750 None:intergenic 45.0%
GAACGAGATGACGAGTTTCA+AGG - chr1.4:64197009-64197028 MS.gene005034:CDS 45.0%
GAGAGCCTACATGAATCAAC+TGG + chr1.4:64196139-64196158 None:intergenic 45.0%
GAGTTAACTGTGGGTGTACT+TGG - chr1.4:64196880-64196899 MS.gene005034:intron 45.0%
GGGTGACACTCCTCAATATT+GGG - chr1.4:64196577-64196596 MS.gene005034:intron 45.0%
TAGGCTCTCACTTGTTTGCA+AGG - chr1.4:64196150-64196169 MS.gene005034:CDS 45.0%
TGGGTGACACTCCTCAATAT+TGG - chr1.4:64196576-64196595 MS.gene005034:intron 45.0%
! ATGATAGAGGTTTTGCCGGA+GGG - chr1.4:64196082-64196101 MS.gene005034:CDS 45.0%
!! GTGTGCTGGTTTGCATTTGA+AGG - chr1.4:64196760-64196779 MS.gene005034:intron 45.0%
ATCTTGGCAATGCATCCCTC+CGG + chr1.4:64196100-64196119 None:intergenic 50.0%
CTAGGCTTCGTATAGTGTGC+TGG - chr1.4:64196746-64196765 MS.gene005034:intron 50.0%
GGTGCACTTGAGAATAGAGG+TGG - chr1.4:64197126-64197145 MS.gene005034:CDS 50.0%
TAGAGACTTCTTGGAGGGAG+AGG + chr1.4:64196281-64196300 None:intergenic 50.0%
TTAGGATCTGACCTGGAGTC+TGG + chr1.4:64196617-64196636 None:intergenic 50.0%
! CATGATAGAGGTTTTGCCGG+AGG - chr1.4:64196081-64196100 MS.gene005034:CDS 50.0%
!! AGGAGTGTCACCCAAAGCAA+TGG + chr1.4:64196570-64196589 None:intergenic 50.0%
AGACTTCTTGGAGGGAGAGG+TGG + chr1.4:64196278-64196297 None:intergenic 55.0%
GACCTGGAGTCTGGTAGGAT+TGG + chr1.4:64196608-64196627 None:intergenic 55.0%
GATCTGACCTGGAGTCTGGT+AGG + chr1.4:64196613-64196632 None:intergenic 55.0%
GGGAGAGGTGGCAAACAAAG+AGG + chr1.4:64196266-64196285 None:intergenic 55.0%
GGCCAATCCTACCAGACTCC+AGG - chr1.4:64196603-64196622 MS.gene005034:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 64196052 64197203 64196052 ID=MS.gene005034
chr1.4 mRNA 64196052 64197203 64196052 ID=MS.gene005034.t1;Parent=MS.gene005034
chr1.4 exon 64196907 64197203 64196907 ID=MS.gene005034.t1.exon1;Parent=MS.gene005034.t1
chr1.4 CDS 64196907 64197203 64196907 ID=cds.MS.gene005034.t1;Parent=MS.gene005034.t1
chr1.4 exon 64196631 64196749 64196631 ID=MS.gene005034.t1.exon2;Parent=MS.gene005034.t1
chr1.4 CDS 64196631 64196749 64196631 ID=cds.MS.gene005034.t1;Parent=MS.gene005034.t1
chr1.4 exon 64196052 64196523 64196052 ID=MS.gene005034.t1.exon3;Parent=MS.gene005034.t1
chr1.4 CDS 64196052 64196523 64196052 ID=cds.MS.gene005034.t1;Parent=MS.gene005034.t1
Gene Sequence

>MS.gene005034

ATGGATATGAAAACCGAAGAAGGAAAAAACATGATAGAGGTTTTGCCGGAGGGATGCATTGCCAAGATATTGTCGCATACAACTCCAGTTGATTCATGTAGGCTCTCACTTGTTTGCAAGGGCTTTTGTTCTGCCGCTAAATCAGATACTGTTTGGGATCGTTTTCTCCCATCTGATTTGATCTCAATCATTTCTGATTCCCAGTCTGCTTCCTCTTTGTTTGCCACCTCTCCCTCCAAGAAGTCTCTATATATCACTCTCTCTGACCATCCTATCATAATAGACAATGGTAAAAAGGTATCATTCTCACAAACTACCAAATCAGTTTCGATTTTTACTACAGATACTATTATATATTCATATATAATAATCATTCACTATTAGTTAGAATGTTAAACTTGACTCTTTTAATATATATTATCTGAACTATTTAAATGGTGCCACTAAAATTCAGAGCTTTCAATTGGAGAAACAGAGTGGTAGAAAGATATACATGCTTAGTGCTAGAGATATCTCCATTGCTTTGGGTGACACTCCTCAATATTGGGATTGGCCAATCCTACCAGACTCCAGGTCAGATCCTAATTAGATTTTCTTTACTAATTACTTGTATTTTTTCTCGCATTGGAGATGTGTTAATTGTGTTATTGATCTTGCGTTTATTTACAACTTTTGACCAGATTCAGAGAAGTTGCTAGGCTTCGTATAGTGTGCTGGTTTGCATTTGAAGGGACAATTAATAAACGTGTTCTATCCTCAAATACTCAATATGCAGCTTTTCTTGTCTTCAAGATGATCAATGCCTTTGGTTTTGATGAAATTCCTATCGAGTTAACTGTGGGTGTACTTGGAGACCAAATAACTATGCGTATAAATGGAAAGCAAGTAACTGTTGGTGTACTTGGAGATCAAATATCAACCAAAAATGTTTGGTTGGACCCAGAATATGATGATAGAGAACGAGATGACGAGTTTCAAGGACTAGAACGTTCAAAAATGAGAAGTGATGGATTTTTGGAGATCAAGATGGGAGAATTCTTTAATTCAGGCCTAGAAGATGAAGTTGTTGAGATGGGTGCACTTGAGAATAGAGGTGGTCATTCAAAATGTGGTTTCATTCTTGAAGGAATAGAAATAAGACCCAAGAATTAG
Protein sequence

>MS.gene005034.t1

MDMKTEEGKNMIEVLPEGCIAKILSHTTPVDSCRLSLVCKGFCSAAKSDTVWDRFLPSDLISIISDSQSASSLFATSPSKKSLYITLSDHPIIIDNGKKSFQLEKQSGRKIYMLSARDISIALGDTPQYWDWPILPDSRFREVARLRIVCWFAFEGTINKRVLSSNTQYAAFLVFKMINAFGFDEIPIELTVGVLGDQITMRINGKQVTVGVLGDQISTKNVWLDPEYDDRERDDEFQGLERSKMRSDGFLEIKMGEFFNSGLEDEVVEMGALENRGGHSKCGFILEGIEIRPKN