Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04280.t1 | XP_013459742.1 | 76.6 | 273 | 58 | 2 | 1 | 273 | 1 | 267 | 2.60E-108 | 401.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04280.t1 | Q949S5 | 38.1 | 260 | 153 | 3 | 13 | 272 | 4 | 255 | 1.0e-36 | 155.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04280.t1 | A0A072UXI4 | 76.6 | 273 | 58 | 2 | 1 | 273 | 1 | 267 | 1.9e-108 | 401.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04280.t1 | MTR_3g452600 | 76.557 | 273 | 58 | 2 | 1 | 273 | 1 | 267 | 3.39e-148 | 416 |
| MS.gene04280.t1 | MTR_3g450990 | 68.166 | 289 | 70 | 4 | 1 | 273 | 1 | 283 | 6.39e-131 | 372 |
| MS.gene04280.t1 | MTR_2g079100 | 66.544 | 272 | 73 | 5 | 4 | 270 | 3 | 261 | 3.25e-120 | 345 |
| MS.gene04280.t1 | MTR_1g079460 | 62.879 | 264 | 97 | 1 | 10 | 273 | 4 | 266 | 2.22e-112 | 325 |
| MS.gene04280.t1 | MTR_1g079180 | 61.654 | 266 | 96 | 5 | 10 | 273 | 4 | 265 | 6.65e-110 | 318 |
| MS.gene04280.t1 | MTR_3g006850 | 55.340 | 309 | 98 | 6 | 3 | 273 | 9 | 315 | 2.69e-108 | 316 |
| MS.gene04280.t1 | MTR_1g079370 | 59.925 | 267 | 99 | 5 | 10 | 273 | 4 | 265 | 1.22e-105 | 307 |
| MS.gene04280.t1 | MTR_1g100597 | 58.273 | 278 | 99 | 5 | 7 | 273 | 1 | 272 | 2.39e-105 | 307 |
| MS.gene04280.t1 | MTR_1g079260 | 58.484 | 277 | 100 | 6 | 7 | 273 | 1 | 272 | 6.65e-101 | 296 |
| MS.gene04280.t1 | MTR_1g079200 | 58.271 | 266 | 104 | 3 | 10 | 273 | 4 | 264 | 9.15e-101 | 295 |
| MS.gene04280.t1 | MTR_1g079230 | 57.818 | 275 | 100 | 6 | 10 | 273 | 4 | 273 | 9.97e-101 | 295 |
| MS.gene04280.t1 | MTR_1g079380 | 59.925 | 267 | 99 | 5 | 10 | 273 | 4 | 265 | 3.23e-98 | 290 |
| MS.gene04280.t1 | MTR_1g079850 | 55.000 | 280 | 110 | 3 | 9 | 273 | 3 | 281 | 3.08e-95 | 282 |
| MS.gene04280.t1 | MTR_1g079250 | 55.714 | 280 | 109 | 6 | 7 | 273 | 1 | 278 | 6.67e-91 | 271 |
| MS.gene04280.t1 | MTR_1g026510 | 52.281 | 285 | 116 | 7 | 7 | 273 | 1 | 283 | 8.39e-89 | 266 |
| MS.gene04280.t1 | MTR_1g100613 | 57.377 | 244 | 87 | 3 | 26 | 256 | 5 | 244 | 1.12e-86 | 258 |
| MS.gene04280.t1 | MTR_1g079350 | 51.636 | 275 | 125 | 5 | 7 | 273 | 1 | 275 | 1.86e-83 | 251 |
| MS.gene04280.t1 | MTR_7g096300 | 55.952 | 252 | 100 | 4 | 10 | 258 | 4 | 247 | 1.45e-78 | 252 |
| MS.gene04280.t1 | MTR_1g079410 | 47.794 | 272 | 130 | 6 | 9 | 273 | 7 | 273 | 7.65e-73 | 224 |
| MS.gene04280.t1 | MTR_1g079340 | 45.890 | 292 | 139 | 4 | 1 | 273 | 34 | 325 | 5.64e-70 | 219 |
| MS.gene04280.t1 | MTR_3g058640 | 91.509 | 106 | 8 | 1 | 133 | 237 | 1 | 106 | 2.02e-65 | 199 |
| MS.gene04280.t1 | MTR_1g079140 | 39.597 | 298 | 142 | 7 | 10 | 273 | 13 | 306 | 1.95e-57 | 186 |
| MS.gene04280.t1 | MTR_1g076870 | 64.444 | 135 | 30 | 1 | 138 | 254 | 2 | 136 | 5.53e-55 | 174 |
| MS.gene04280.t1 | MTR_1g078470 | 54.144 | 181 | 79 | 4 | 93 | 273 | 8 | 184 | 1.14e-54 | 175 |
| MS.gene04280.t1 | MTR_1g079400 | 41.818 | 275 | 140 | 6 | 11 | 273 | 13 | 279 | 1.26e-54 | 178 |
| MS.gene04280.t1 | MTR_1g079240 | 50.000 | 182 | 81 | 4 | 92 | 273 | 8 | 179 | 2.35e-45 | 151 |
| MS.gene04280.t1 | MTR_7g112560 | 37.736 | 265 | 156 | 6 | 10 | 273 | 1 | 257 | 3.35e-45 | 153 |
| MS.gene04280.t1 | MTR_1g079350 | 47.872 | 188 | 91 | 4 | 7 | 189 | 1 | 186 | 6.98e-45 | 151 |
| MS.gene04280.t1 | MTR_1g083580 | 35.379 | 277 | 163 | 7 | 10 | 273 | 8 | 281 | 7.98e-44 | 150 |
| MS.gene04280.t1 | MTR_7g112550 | 37.050 | 278 | 154 | 8 | 13 | 273 | 10 | 283 | 1.49e-43 | 149 |
| MS.gene04280.t1 | MTR_4g023570 | 36.742 | 264 | 140 | 7 | 10 | 273 | 1 | 237 | 2.09e-40 | 140 |
| MS.gene04280.t1 | MTR_2g042540 | 60.952 | 105 | 38 | 2 | 9 | 112 | 3 | 105 | 9.38e-37 | 127 |
| MS.gene04280.t1 | MTR_1g079210 | 52.033 | 123 | 45 | 1 | 139 | 247 | 7 | 129 | 1.80e-32 | 116 |
| MS.gene04280.t1 | MTR_1g078460 | 60.870 | 92 | 33 | 1 | 5 | 96 | 62 | 150 | 6.52e-31 | 113 |
| MS.gene04280.t1 | MTR_7g096310 | 45.806 | 155 | 72 | 4 | 44 | 196 | 19 | 163 | 7.28e-26 | 100 |
| MS.gene04280.t1 | MTR_1g079220 | 56.061 | 66 | 29 | 0 | 175 | 240 | 1 | 66 | 5.25e-18 | 77.0 |
| MS.gene04280.t1 | MTR_7g103380 | 22.628 | 274 | 188 | 6 | 12 | 272 | 21 | 283 | 2.71e-16 | 77.4 |
| MS.gene04280.t1 | MTR_1g079390 | 64.286 | 56 | 18 | 2 | 213 | 268 | 2 | 55 | 9.57e-14 | 64.7 |
| MS.gene04280.t1 | MTR_0113s0040 | 26.829 | 205 | 131 | 6 | 9 | 199 | 21 | 220 | 1.06e-12 | 67.0 |
| MS.gene04280.t1 | MTR_1g101390 | 24.364 | 275 | 171 | 8 | 12 | 272 | 30 | 281 | 6.37e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04280.t1 | AT1G80110 | 38.077 | 260 | 153 | 3 | 13 | 272 | 4 | 255 | 2.12e-48 | 161 |
| MS.gene04280.t1 | AT2G02360 | 34.767 | 279 | 164 | 7 | 1 | 272 | 1 | 268 | 3.00e-45 | 154 |
| MS.gene04280.t1 | AT2G02250 | 35.849 | 265 | 160 | 6 | 10 | 272 | 47 | 303 | 4.96e-43 | 149 |
| MS.gene04280.t1 | AT2G02340 | 36.299 | 281 | 160 | 10 | 3 | 272 | 29 | 301 | 1.36e-42 | 147 |
| MS.gene04280.t1 | AT1G09155 | 37.234 | 282 | 152 | 9 | 13 | 273 | 3 | 280 | 1.54e-42 | 147 |
| MS.gene04280.t1 | AT2G02240 | 36.604 | 265 | 157 | 7 | 10 | 272 | 61 | 316 | 3.41e-42 | 147 |
| MS.gene04280.t1 | AT1G56240 | 36.170 | 282 | 153 | 9 | 13 | 272 | 4 | 280 | 6.64e-40 | 140 |
| MS.gene04280.t1 | AT1G56250 | 36.396 | 283 | 153 | 9 | 13 | 273 | 4 | 281 | 1.63e-39 | 139 |
| MS.gene04280.t1 | AT2G02310 | 34.457 | 267 | 165 | 5 | 10 | 273 | 45 | 304 | 1.79e-38 | 137 |
| MS.gene04280.t1 | AT2G02320 | 33.333 | 267 | 162 | 7 | 12 | 272 | 42 | 298 | 5.21e-36 | 130 |
| MS.gene04280.t1 | AT2G02230 | 30.892 | 314 | 163 | 10 | 6 | 273 | 28 | 333 | 3.13e-35 | 129 |
| MS.gene04280.t1 | AT2G02350 | 31.461 | 267 | 171 | 7 | 10 | 272 | 24 | 282 | 8.27e-34 | 124 |
| MS.gene04280.t1 | AT2G02300 | 32.353 | 272 | 154 | 8 | 9 | 273 | 33 | 281 | 1.42e-29 | 113 |
| MS.gene04280.t1 | AT5G24560 | 32.065 | 184 | 106 | 6 | 10 | 190 | 3 | 170 | 1.24e-21 | 90.1 |
| MS.gene04280.t1 | AT3G53000 | 24.453 | 274 | 182 | 6 | 12 | 272 | 23 | 284 | 7.02e-17 | 79.3 |
| MS.gene04280.t1 | AT2G02350 | 32.143 | 140 | 91 | 3 | 136 | 272 | 27 | 165 | 6.09e-14 | 68.9 |
Find 64 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCCGCATACTGAGTATT+TGG | 0.215477 | 3.4:+55627072 | None:intergenic |
| AAACGGATTTAATGCTTCTA+TGG | 0.269467 | 3.4:+55626974 | None:intergenic |
| CACTTCCAATACTCAATTCA+TGG | 0.291611 | 3.4:-55628870 | MS.gene04280:CDS |
| TTACTATCGTTGACGATGAT+AGG | 0.298613 | 3.4:+55628770 | None:intergenic |
| AAGCATTAAATCCGTTTGTT+TGG | 0.314714 | 3.4:-55626968 | MS.gene04280:CDS |
| AGACAAAGCTTAGCAACTTC+AGG | 0.318899 | 3.4:+55627144 | None:intergenic |
| CATCGTCAACGATAGTAAAA+AGG | 0.323782 | 3.4:-55628765 | MS.gene04280:intron |
| TACGGATTATGTTTCATGTT+TGG | 0.328678 | 3.4:+55626943 | None:intergenic |
| TTCAATATATGCATGGTTCT+AGG | 0.339505 | 3.4:-55628114 | MS.gene04280:intron |
| CCAGACAGTGTCGGAATTAG+AGG | 0.354176 | 3.4:+55628904 | None:intergenic |
| AAGCCGCATACTGAGTATTT+GGG | 0.368940 | 3.4:+55627073 | None:intergenic |
| CCTCTAATTCCGACACTGTC+TGG | 0.374563 | 3.4:-55628904 | MS.gene04280:CDS |
| TGACTCCGGTTGACGTTGTC+AGG | 0.383583 | 3.4:-55628958 | MS.gene04280:CDS |
| AGAGGAGTGGTTCGTGGTTG+AGG | 0.402814 | 3.4:-55626801 | MS.gene04280:CDS |
| ATATTGAATCCACTCTTTCT+CGG | 0.410749 | 3.4:+55628129 | None:intergenic |
| CGATGATAGGGCGATCAGAT+AGG | 0.418240 | 3.4:+55628783 | None:intergenic |
| AATTCTTCTTCTTTGTTGTA+CGG | 0.423726 | 3.4:+55626925 | None:intergenic |
| AGGGGAGATTTGTTTATTGA+AGG | 0.428143 | 3.4:-55626781 | MS.gene04280:CDS |
| TTATTGAAGGAATAGAAGTT+AGG | 0.429623 | 3.4:-55626768 | MS.gene04280:CDS |
| TACGGACTTCTTCATCTTTG+AGG | 0.429778 | 3.4:+55626836 | None:intergenic |
| GAGGAGTGGTTCGTGGTTGA+GGG | 0.431657 | 3.4:-55626800 | MS.gene04280:CDS |
| CAGATAGGAAAGTCTTAGAT+AGG | 0.437798 | 3.4:+55628927 | None:intergenic |
| ATTGTGGCGATGCAACCTTC+CGG | 0.457722 | 3.4:+55628992 | None:intergenic |
| ATTGCTTAATTGTCTTACTT+AGG | 0.474152 | 3.4:+55626745 | None:intergenic |
| GAGAGCCTGACAACGTCAAC+CGG | 0.476682 | 3.4:+55628953 | None:intergenic |
| ACAATCAATGGTGAGAGATC+TGG | 0.482863 | 3.4:+55628165 | None:intergenic |
| CATGTTTGGATCCAAACAAA+CGG | 0.484730 | 3.4:+55626957 | None:intergenic |
| TCAACCACGAACCACTCCTC+TGG | 0.485635 | 3.4:+55626803 | None:intergenic |
| CGTCCTAGTGTGAGAAGCGA+TGG | 0.489108 | 3.4:-55626898 | MS.gene04280:CDS |
| TACTATCGTTGACGATGATA+GGG | 0.496668 | 3.4:+55628771 | None:intergenic |
| GACAAAGCTTAGCAACTTCA+GGG | 0.499756 | 3.4:+55627145 | None:intergenic |
| CTTCACATTACGACAATCAA+TGG | 0.502020 | 3.4:+55628153 | None:intergenic |
| GATGATAGGGCGATCAGATA+GGG | 0.506542 | 3.4:+55628784 | None:intergenic |
| TTGTTCTCACATGAAATTCG+TGG | 0.508849 | 3.4:-55627120 | MS.gene04280:CDS |
| TGTCGGAATTAGAGGCAGAT+AGG | 0.523490 | 3.4:+55628912 | None:intergenic |
| TGTTCTCACATGAAATTCGT+GGG | 0.526637 | 3.4:-55627119 | MS.gene04280:CDS |
| GTAGGACTGTTTGCAATGGA+AGG | 0.526711 | 3.4:+55628827 | None:intergenic |
| TGGGTGGTTGGAGATTGAGA+TGG | 0.532103 | 3.4:-55626878 | MS.gene04280:CDS |
| AGAGTCCATGAATTGAGTAT+TGG | 0.538122 | 3.4:+55628865 | None:intergenic |
| GGGTGGTTGGAGATTGAGAT+GGG | 0.540728 | 3.4:-55626877 | MS.gene04280:CDS |
| CACCCATCGCTTCTCACACT+AGG | 0.543006 | 3.4:+55626895 | None:intergenic |
| TTTCAATTTCATAGAAAGAG+TGG | 0.544596 | 3.4:-55628211 | MS.gene04280:CDS |
| TTTAAGATAATTTATGCCCG+TGG | 0.565342 | 3.4:-55627042 | MS.gene04280:CDS |
| TCCTCTGGATAACACACATA+CGG | 0.566781 | 3.4:+55626818 | None:intergenic |
| ATGTGAAGGCCGAGAAAGAG+TGG | 0.568335 | 3.4:-55628138 | MS.gene04280:CDS |
| TGAGAGATCTGGCAGCAAGC+AGG | 0.573332 | 3.4:+55628176 | None:intergenic |
| TGTGAGAAGCGATGGGTGGT+TGG | 0.576323 | 3.4:-55626890 | MS.gene04280:CDS |
| TTATCCAGAGGAGTGGTTCG+TGG | 0.586146 | 3.4:-55626807 | MS.gene04280:CDS |
| AGGTTCGTTCACATATCCAC+GGG | 0.599651 | 3.4:+55627026 | None:intergenic |
| TTTAGTAGGACTGTTTGCAA+TGG | 0.611519 | 3.4:+55628823 | None:intergenic |
| CATTGATTGTCGTAATGTGA+AGG | 0.613723 | 3.4:-55628152 | MS.gene04280:CDS |
| CAGGTTCGTTCACATATCCA+CGG | 0.617363 | 3.4:+55627025 | None:intergenic |
| AGGAGTGGTTCGTGGTTGAG+GGG | 0.622243 | 3.4:-55626799 | MS.gene04280:CDS |
| AGCCGCATACTGAGTATTTG+GGG | 0.630234 | 3.4:+55627074 | None:intergenic |
| AATACTCTCTCGTATGACTC+CGG | 0.632315 | 3.4:-55628972 | MS.gene04280:CDS |
| TCCGTATGTGTGTTATCCAG+AGG | 0.633374 | 3.4:-55626819 | MS.gene04280:CDS |
| GAGTGGATTCAATATATGCA+TGG | 0.636888 | 3.4:-55628121 | MS.gene04280:CDS |
| GTCCTAGTGTGAGAAGCGAT+GGG | 0.641166 | 3.4:-55626897 | MS.gene04280:CDS |
| ATGTGTGTTATCCAGAGGAG+TGG | 0.642237 | 3.4:-55626814 | MS.gene04280:CDS |
| GTCCCCAAATACTCAGTATG+CGG | 0.642695 | 3.4:-55627076 | MS.gene04280:CDS |
| AAAACTATTCCAGACAGTGT+CGG | 0.650825 | 3.4:+55628895 | None:intergenic |
| ACACCAACAGAAAAGCTCAC+AGG | 0.661014 | 3.4:+55627006 | None:intergenic |
| CTAGTGTGAGAAGCGATGGG+TGG | 0.709944 | 3.4:-55626894 | MS.gene04280:CDS |
| AGTCATACGAGAGAGTATTG+TGG | 0.723681 | 3.4:+55628976 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATACTAAAATTAAG+TGG | - | chr3.4:55627501-55627520 | MS.gene04280:intron | 15.0% |
| !!! | TGTTTTTATTGTTTTTGAAA+AGG | + | chr3.4:55627482-55627501 | None:intergenic | 15.0% |
| !! | AATAGAAAATAATGTATTCC+CGG | + | chr3.4:55627750-55627769 | None:intergenic | 20.0% |
| !! | ATGACAATTTCTTGAATATT+AGG | - | chr3.4:55627063-55627082 | MS.gene04280:CDS | 20.0% |
| !! | TAAGTTAATCAAGACATATT+GGG | + | chr3.4:55627777-55627796 | None:intergenic | 20.0% |
| !! | TTAAGTTAATCAAGACATAT+TGG | + | chr3.4:55627778-55627797 | None:intergenic | 20.0% |
| !!! | ATGATAATTCTTTTTGTTGA+TGG | - | chr3.4:55628467-55628486 | MS.gene04280:intron | 20.0% |
| ! | AGAATTATCATCACATATTG+AGG | + | chr3.4:55628458-55628477 | None:intergenic | 25.0% |
| ! | ATCCAGTAAAGTATGAAAAT+TGG | + | chr3.4:55628496-55628515 | None:intergenic | 25.0% |
| ! | GACGATTATACAAAAGAAAA+AGG | + | chr3.4:55627433-55627452 | None:intergenic | 25.0% |
| ! | GTATAAATACTCAATATGTG+AGG | - | chr3.4:55628545-55628564 | MS.gene04280:intron | 25.0% |
| ! | TAAAACAACTATCTAAAAGC+TGG | + | chr3.4:55627161-55627180 | None:intergenic | 25.0% |
| ! | TAAACAGTACAATCAAAACA+CGG | - | chr3.4:55627456-55627475 | MS.gene04280:intron | 25.0% |
| ! | TACTAAAAAAGCTCTCTATA+TGG | - | chr3.4:55626983-55627002 | MS.gene04280:CDS | 25.0% |
| ! | TCCAGTAAAGTATGAAAATT+GGG | + | chr3.4:55628495-55628514 | None:intergenic | 25.0% |
| ! | TTATTGAAGGAATAGAAGTT+AGG | - | chr3.4:55629022-55629041 | MS.gene04280:CDS | 25.0% |
| ! | TTTCAATTTCATAGAAAGAG+TGG | - | chr3.4:55627579-55627598 | MS.gene04280:intron | 25.0% |
| !! | AATTCTTCTTCTTTGTTGTA+CGG | + | chr3.4:55628868-55628887 | None:intergenic | 25.0% |
| !! | ACTTTTTGCACAAATTTTAC+AGG | - | chr3.4:55628620-55628639 | MS.gene04280:intron | 25.0% |
| !! | CAAAAGAATAAAAGCTTTTG+AGG | - | chr3.4:55626770-55626789 | MS.gene04280:CDS | 25.0% |
| !! | GGAAAATATTTTCACTCATA+CGG | + | chr3.4:55628393-55628412 | None:intergenic | 25.0% |
| !! | TATTTCATGTGTCTTTTGAT+TGG | - | chr3.4:55627887-55627906 | MS.gene04280:intron | 25.0% |
| !!! | ATATAGAGAGCTTTTTTAGT+AGG | + | chr3.4:55626984-55627003 | None:intergenic | 25.0% |
| !!! | ATCACACTCAACATTTTTTA+TGG | - | chr3.4:55627851-55627870 | MS.gene04280:intron | 25.0% |
| AAGCATTAAATCCGTTTGTT+TGG | - | chr3.4:55628822-55628841 | MS.gene04280:CDS | 30.0% | |
| ATATTGAATCCACTCTTTCT+CGG | + | chr3.4:55627664-55627683 | None:intergenic | 30.0% | |
| TTATCAGTTACTACTGTTCA+GGG | - | chr3.4:55627091-55627110 | MS.gene04280:CDS | 30.0% | |
| TTCAATATATGCATGGTTCT+AGG | - | chr3.4:55627676-55627695 | MS.gene04280:intron | 30.0% | |
| TTTGAATTGAGGGATTAAGA+AGG | + | chr3.4:55627340-55627359 | None:intergenic | 30.0% | |
| ! | AAACGGATTTAATGCTTCTA+TGG | + | chr3.4:55628819-55628838 | None:intergenic | 30.0% |
| ! | TACGGATTATGTTTCATGTT+TGG | + | chr3.4:55628850-55628869 | None:intergenic | 30.0% |
| ! | TATTTTCCATTTTCAGCTTC+TGG | - | chr3.4:55628405-55628424 | MS.gene04280:intron | 30.0% |
| ! | TCCCAATTTTCATACTTTAC+TGG | - | chr3.4:55628491-55628510 | MS.gene04280:intron | 30.0% |
| ! | TGTTGATACACTGATAATGT+AGG | + | chr3.4:55628522-55628541 | None:intergenic | 30.0% |
| ! | TTTAAGATAATTTATGCCCG+TGG | - | chr3.4:55628748-55628767 | MS.gene04280:intron | 30.0% |
| !! | TTCAATTTTGAGAGAAGCTA+TGG | + | chr3.4:55628235-55628254 | None:intergenic | 30.0% |
| AAAACTATTCCAGACAGTGT+CGG | + | chr3.4:55626898-55626917 | None:intergenic | 35.0% | |
| AATTGAGGGATTAAGAAGGA+AGG | + | chr3.4:55627336-55627355 | None:intergenic | 35.0% | |
| ACATATCCAGAAGCTGAAAA+TGG | + | chr3.4:55628414-55628433 | None:intergenic | 35.0% | |
| AGAGTCCATGAATTGAGTAT+TGG | + | chr3.4:55626928-55626947 | None:intergenic | 35.0% | |
| CACTTCCAATACTCAATTCA+TGG | - | chr3.4:55626920-55626939 | MS.gene04280:CDS | 35.0% | |
| CAGATAGGAAAGTCTTAGAT+AGG | + | chr3.4:55626866-55626885 | None:intergenic | 35.0% | |
| CATCGTCAACGATAGTAAAA+AGG | - | chr3.4:55627025-55627044 | MS.gene04280:CDS | 35.0% | |
| CATGTTTGGATCCAAACAAA+CGG | + | chr3.4:55628836-55628855 | None:intergenic | 35.0% | |
| CTTCACATTACGACAATCAA+TGG | + | chr3.4:55627640-55627659 | None:intergenic | 35.0% | |
| GTTATCAGTTACTACTGTTC+AGG | - | chr3.4:55627090-55627109 | MS.gene04280:CDS | 35.0% | |
| TACTATCGTTGACGATGATA+GGG | + | chr3.4:55627022-55627041 | None:intergenic | 35.0% | |
| TGTTCTCACATGAAATTCGT+GGG | - | chr3.4:55628671-55628690 | MS.gene04280:intron | 35.0% | |
| TTACTATCGTTGACGATGAT+AGG | + | chr3.4:55627023-55627042 | None:intergenic | 35.0% | |
| TTGCTTATAATTGAGACCGA+GGG | - | chr3.4:55628359-55628378 | MS.gene04280:intron | 35.0% | |
| TTGTTCTCACATGAAATTCG+TGG | - | chr3.4:55628670-55628689 | MS.gene04280:intron | 35.0% | |
| TTTAGTAGGACTGTTTGCAA+TGG | + | chr3.4:55626970-55626989 | None:intergenic | 35.0% | |
| TTTGCTTATAATTGAGACCG+AGG | - | chr3.4:55628358-55628377 | MS.gene04280:intron | 35.0% | |
| ! | AGGGGAGATTTGTTTATTGA+AGG | - | chr3.4:55629009-55629028 | MS.gene04280:CDS | 35.0% |
| ! | CAAAGGTGTGTTTGAATTGA+GGG | + | chr3.4:55627350-55627369 | None:intergenic | 35.0% |
| ! | CATTGATTGTCGTAATGTGA+AGG | - | chr3.4:55627638-55627657 | MS.gene04280:intron | 35.0% |
| ! | GAGTGGATTCAATATATGCA+TGG | - | chr3.4:55627669-55627688 | MS.gene04280:intron | 35.0% |
| ! | TTGCGACATTAAGTATTGTG+CGG | + | chr3.4:55628209-55628228 | None:intergenic | 35.0% |
| !! | AAAAGCTTTTGAGGAATTGC+CGG | - | chr3.4:55626779-55626798 | MS.gene04280:CDS | 35.0% |
| !!! | AAATGCGATGTGCTACTTTT+AGG | - | chr3.4:55628183-55628202 | MS.gene04280:CDS | 35.0% |
| AAGCCGCATACTGAGTATTT+GGG | + | chr3.4:55628720-55628739 | None:intergenic | 40.0% | |
| AATACTCTCTCGTATGACTC+CGG | - | chr3.4:55626818-55626837 | MS.gene04280:CDS | 40.0% | |
| AATTCCATTTAGCAGCAACC+CGG | + | chr3.4:55627940-55627959 | None:intergenic | 40.0% | |
| ACAATCAATGGTGAGAGATC+TGG | + | chr3.4:55627628-55627647 | None:intergenic | 40.0% | |
| ACCGTTTCATGTGAATAAGC+CGG | - | chr3.4:55627728-55627747 | MS.gene04280:intron | 40.0% | |
| AGACAAAGCTTAGCAACTTC+AGG | + | chr3.4:55628649-55628668 | None:intergenic | 40.0% | |
| CAACCCGGAAAATTTCCTTA+AGG | + | chr3.4:55627925-55627944 | None:intergenic | 40.0% | |
| CCGGAAAATTTCCTTAAGGA+GGG | + | chr3.4:55627921-55627940 | None:intergenic | 40.0% | |
| CCTCAATTCAAACACACCTT+TGG | - | chr3.4:55627348-55627367 | MS.gene04280:intron | 40.0% | |
| CGGAAAATTTCCTTAAGGAG+GGG | + | chr3.4:55627920-55627939 | None:intergenic | 40.0% | |
| GAAACACACCAATACTCCAA+AGG | + | chr3.4:55627367-55627386 | None:intergenic | 40.0% | |
| GACAAAGCTTAGCAACTTCA+GGG | + | chr3.4:55628648-55628667 | None:intergenic | 40.0% | |
| TAAGCCGCATACTGAGTATT+TGG | + | chr3.4:55628721-55628740 | None:intergenic | 40.0% | |
| TACGGACTTCTTCATCTTTG+AGG | + | chr3.4:55628957-55628976 | None:intergenic | 40.0% | |
| TCATACGGTATGAATTCCCT+CGG | + | chr3.4:55628378-55628397 | None:intergenic | 40.0% | |
| TCCTCTGGATAACACACATA+CGG | + | chr3.4:55628975-55628994 | None:intergenic | 40.0% | |
| ! | CCAAAGGTGTGTTTGAATTG+AGG | + | chr3.4:55627351-55627370 | None:intergenic | 40.0% |
| ! | CCCTCCTTAAGGAAATTTTC+CGG | - | chr3.4:55627918-55627937 | MS.gene04280:intron | 40.0% |
| ! | CCTCCTTAAGGAAATTTTCC+GGG | - | chr3.4:55627919-55627938 | MS.gene04280:intron | 40.0% |
| !! | AGTCATACGAGAGAGTATTG+TGG | + | chr3.4:55626817-55626836 | None:intergenic | 40.0% |
| !! | CAAACACACCTTTGGAGTAT+TGG | - | chr3.4:55627356-55627375 | MS.gene04280:intron | 40.0% |
| ACACCAACAGAAAAGCTCAC+AGG | + | chr3.4:55628787-55628806 | None:intergenic | 45.0% | |
| AGCCGCATACTGAGTATTTG+GGG | + | chr3.4:55628719-55628738 | None:intergenic | 45.0% | |
| AGGTTCGTTCACATATCCAC+GGG | + | chr3.4:55628767-55628786 | None:intergenic | 45.0% | |
| ATGTGTGTTATCCAGAGGAG+TGG | - | chr3.4:55628976-55628995 | MS.gene04280:CDS | 45.0% | |
| CAGGTTCGTTCACATATCCA+CGG | + | chr3.4:55628768-55628787 | None:intergenic | 45.0% | |
| CCCGGAAAATTTCCTTAAGG+AGG | + | chr3.4:55627922-55627941 | None:intergenic | 45.0% | |
| CCCGGCTTATTCACATGAAA+CGG | + | chr3.4:55627732-55627751 | None:intergenic | 45.0% | |
| CCGTTTCATGTGAATAAGCC+GGG | - | chr3.4:55627729-55627748 | MS.gene04280:intron | 45.0% | |
| GATGATAGGGCGATCAGATA+GGG | + | chr3.4:55627009-55627028 | None:intergenic | 45.0% | |
| GTAGGACTGTTTGCAATGGA+AGG | + | chr3.4:55626966-55626985 | None:intergenic | 45.0% | |
| GTCCCCAAATACTCAGTATG+CGG | - | chr3.4:55628714-55628733 | MS.gene04280:intron | 45.0% | |
| TCCGTATGTGTGTTATCCAG+AGG | - | chr3.4:55628971-55628990 | MS.gene04280:CDS | 45.0% | |
| TGTCGGAATTAGAGGCAGAT+AGG | + | chr3.4:55626881-55626900 | None:intergenic | 45.0% | |
| ! | GAACCTGTGAGCTTTTCTGT+TGG | - | chr3.4:55628781-55628800 | MS.gene04280:CDS | 45.0% |
| ! | TTTTCCGGGTTGCTGCTAAA+TGG | - | chr3.4:55627933-55627952 | MS.gene04280:intron | 45.0% |
| !!! | AGCTTTTCTGTTGGTGTCGA+TGG | - | chr3.4:55628790-55628809 | MS.gene04280:CDS | 45.0% |
| !!! | TTTTCTGTTGGTGTCGATGG+TGG | - | chr3.4:55628793-55628812 | MS.gene04280:CDS | 45.0% |
| ATGTGAAGGCCGAGAAAGAG+TGG | - | chr3.4:55627652-55627671 | MS.gene04280:intron | 50.0% | |
| ATTGTGGCGATGCAACCTTC+CGG | + | chr3.4:55626801-55626820 | None:intergenic | 50.0% | |
| CATCGCATTTAGCAGCAACC+CGG | + | chr3.4:55628173-55628192 | None:intergenic | 50.0% | |
| CCTCTAATTCCGACACTGTC+TGG | - | chr3.4:55626886-55626905 | MS.gene04280:CDS | 50.0% | |
| CGATGATAGGGCGATCAGAT+AGG | + | chr3.4:55627010-55627029 | None:intergenic | 50.0% | |
| GGGTGGTTGGAGATTGAGAT+GGG | - | chr3.4:55628913-55628932 | MS.gene04280:CDS | 50.0% | |
| GTCCTAGTGTGAGAAGCGAT+GGG | - | chr3.4:55628893-55628912 | MS.gene04280:CDS | 50.0% | |
| TGGGTGGTTGGAGATTGAGA+TGG | - | chr3.4:55628912-55628931 | MS.gene04280:CDS | 50.0% | |
| TTATCCAGAGGAGTGGTTCG+TGG | - | chr3.4:55628983-55629002 | MS.gene04280:CDS | 50.0% | |
| ! | CCAGACAGTGTCGGAATTAG+AGG | + | chr3.4:55626889-55626908 | None:intergenic | 50.0% |
| !! | GCTTTTGAGGAATTGCCGGA+AGG | - | chr3.4:55626783-55626802 | MS.gene04280:CDS | 50.0% |
| !! | TGGTCTTGTTCCCCTCCTTA+AGG | - | chr3.4:55627907-55627926 | MS.gene04280:intron | 50.0% |
| AGAGGAGTGGTTCGTGGTTG+AGG | - | chr3.4:55628989-55629008 | MS.gene04280:CDS | 55.0% | |
| AGGAGTGGTTCGTGGTTGAG+GGG | - | chr3.4:55628991-55629010 | MS.gene04280:CDS | 55.0% | |
| CACCCATCGCTTCTCACACT+AGG | + | chr3.4:55628898-55628917 | None:intergenic | 55.0% | |
| CGTCCTAGTGTGAGAAGCGA+TGG | - | chr3.4:55628892-55628911 | MS.gene04280:CDS | 55.0% | |
| CTAGTGTGAGAAGCGATGGG+TGG | - | chr3.4:55628896-55628915 | MS.gene04280:CDS | 55.0% | |
| GAGAGCCTGACAACGTCAAC+CGG | + | chr3.4:55626840-55626859 | None:intergenic | 55.0% | |
| GAGGAGTGGTTCGTGGTTGA+GGG | - | chr3.4:55628990-55629009 | MS.gene04280:CDS | 55.0% | |
| TCAACCACGAACCACTCCTC+TGG | + | chr3.4:55628990-55629009 | None:intergenic | 55.0% | |
| TGACTCCGGTTGACGTTGTC+AGG | - | chr3.4:55626832-55626851 | MS.gene04280:CDS | 55.0% | |
| TGAGAGATCTGGCAGCAAGC+AGG | + | chr3.4:55627617-55627636 | None:intergenic | 55.0% | |
| TGTGAGAAGCGATGGGTGGT+TGG | - | chr3.4:55628900-55628919 | MS.gene04280:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 55626759 | 55629053 | 55626759 | ID=MS.gene04280 |
| chr3.4 | mRNA | 55626759 | 55629053 | 55626759 | ID=MS.gene04280.t1;Parent=MS.gene04280 |
| chr3.4 | exon | 55628766 | 55629053 | 55628766 | ID=MS.gene04280.t1.exon1;Parent=MS.gene04280.t1 |
| chr3.4 | CDS | 55628766 | 55629053 | 55628766 | ID=cds.MS.gene04280.t1;Parent=MS.gene04280.t1 |
| chr3.4 | exon | 55628115 | 55628236 | 55628115 | ID=MS.gene04280.t1.exon2;Parent=MS.gene04280.t1 |
| chr3.4 | CDS | 55628115 | 55628236 | 55628115 | ID=cds.MS.gene04280.t1;Parent=MS.gene04280.t1 |
| chr3.4 | exon | 55626759 | 55627170 | 55626759 | ID=MS.gene04280.t1.exon3;Parent=MS.gene04280.t1 |
| chr3.4 | CDS | 55626759 | 55627170 | 55626759 | ID=cds.MS.gene04280.t1;Parent=MS.gene04280.t1 |
| Gene Sequence |
| Protein sequence |
