AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005028


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005028.t1 MTR_1g079380 94.382 267 15 0 1 267 1 267 1.23e-178 493
MS.gene005028.t1 MTR_1g079370 84.151 265 42 0 1 265 1 265 4.05e-168 465
MS.gene005028.t1 MTR_1g079180 75.000 268 61 3 1 265 1 265 5.70e-146 409
MS.gene005028.t1 MTR_1g079260 69.455 275 77 2 1 268 1 275 7.27e-140 394
MS.gene005028.t1 MTR_1g079460 71.587 271 72 2 1 268 1 269 2.08e-137 388
MS.gene005028.t1 MTR_1g100597 69.928 276 74 2 1 268 1 275 3.95e-137 387
MS.gene005028.t1 MTR_1g079200 71.481 270 66 4 1 265 1 264 7.95e-135 381
MS.gene005028.t1 MTR_1g079230 65.580 276 87 2 1 268 1 276 5.04e-126 359
MS.gene005028.t1 MTR_1g079850 63.380 284 88 3 1 268 1 284 1.10e-120 346
MS.gene005028.t1 MTR_1g100613 67.755 245 67 2 15 248 1 244 2.52e-115 331
MS.gene005028.t1 MTR_3g452600 63.910 266 90 4 4 268 10 270 2.33e-113 327
MS.gene005028.t1 MTR_1g079250 60.498 281 98 5 1 268 1 281 3.88e-108 315
MS.gene005028.t1 MTR_1g026510 56.294 286 107 6 1 268 1 286 1.20e-105 308
MS.gene005028.t1 MTR_3g006850 56.863 306 87 5 4 268 17 318 1.59e-105 309
MS.gene005028.t1 MTR_1g079410 56.667 270 109 4 2 265 6 273 7.08e-102 298
MS.gene005028.t1 MTR_3g450990 56.738 282 100 6 4 268 10 286 2.02e-99 292
MS.gene005028.t1 MTR_2g079100 59.770 261 95 2 4 262 9 261 1.46e-98 290
MS.gene005028.t1 MTR_1g079350 56.522 276 108 6 1 265 1 275 4.60e-95 281
MS.gene005028.t1 MTR_1g079140 49.324 296 116 5 3 265 12 306 3.47e-92 275
MS.gene005028.t1 MTR_1g078470 69.780 182 49 4 85 265 8 184 2.02e-83 248
MS.gene005028.t1 MTR_1g079340 52.595 289 110 8 1 265 40 325 2.74e-82 250
MS.gene005028.t1 MTR_1g079400 48.057 283 111 4 4 265 12 279 1.89e-81 246
MS.gene005028.t1 MTR_7g096300 55.731 253 93 6 1 245 1 242 3.94e-81 259
MS.gene005028.t1 MTR_7g112550 45.775 284 133 8 2 267 5 285 4.30e-70 218
MS.gene005028.t1 MTR_1g079240 61.453 179 58 4 87 265 12 179 1.68e-63 197
MS.gene005028.t1 MTR_1g083580 41.007 278 148 8 2 265 6 281 3.57e-63 200
MS.gene005028.t1 MTR_7g112560 39.245 265 144 6 7 265 4 257 9.10e-58 185
MS.gene005028.t1 MTR_1g076870 66.418 134 29 1 128 245 2 135 1.56e-54 173
MS.gene005028.t1 MTR_4g023570 37.405 262 133 6 7 265 4 237 1.28e-50 166
MS.gene005028.t1 MTR_1g079130 47.090 189 76 4 101 265 1 189 3.88e-50 163
MS.gene005028.t1 MTR_1g079350 50.898 167 71 4 1 159 1 164 5.63e-45 151
MS.gene005028.t1 MTR_1g079210 56.911 123 41 1 129 239 7 129 2.28e-39 134
MS.gene005028.t1 MTR_3g058640 59.804 102 39 1 128 229 7 106 2.06e-35 123
MS.gene005028.t1 MTR_2g042540 60.000 105 40 2 1 103 1 105 6.13e-34 120
MS.gene005028.t1 MTR_7g096310 49.333 150 68 3 38 185 19 162 7.67e-34 120
MS.gene005028.t1 MTR_1g078460 68.966 87 27 0 1 87 64 150 2.29e-33 119
MS.gene005028.t1 MTR_4g083970 30.288 208 121 3 63 265 102 290 4.17e-29 112
MS.gene005028.t1 MTR_7g103380 25.725 276 179 7 4 264 19 283 5.00e-27 106
MS.gene005028.t1 MTR_1g079220 70.588 68 18 1 165 232 1 66 6.71e-24 92.4
MS.gene005028.t1 MTR_0113s0040 32.768 177 110 4 2 174 20 191 4.59e-23 95.9
MS.gene005028.t1 MTR_0002s0020 29.767 215 123 5 4 195 22 231 9.97e-21 89.4
MS.gene005028.t1 MTR_1g101390 33.143 175 112 3 2 174 26 197 5.82e-20 87.4
MS.gene005028.t1 MTR_5g010800 32.450 151 93 4 2 147 15 161 3.10e-19 85.1
MS.gene005028.t1 MTR_1g079390 76.000 50 10 2 211 260 8 55 4.14e-19 79.0
MS.gene005028.t1 MTR_4g102770 32.877 146 94 2 4 146 19 163 1.19e-16 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005028.t1 AT2G02360 47.328 262 124 5 7 264 17 268 3.94e-81 245
MS.gene005028.t1 AT1G80110 45.594 261 136 3 4 264 1 255 4.35e-74 227
MS.gene005028.t1 AT2G02340 44.074 270 144 4 1 264 33 301 3.27e-73 226
MS.gene005028.t1 AT2G02240 45.385 260 133 5 7 264 64 316 5.48e-73 226
MS.gene005028.t1 AT2G02250 44.528 265 135 7 4 264 47 303 1.11e-71 223
MS.gene005028.t1 AT2G02230 38.689 305 141 7 7 268 35 336 3.11e-68 214
MS.gene005028.t1 AT1G09155 41.935 279 141 7 7 265 3 280 6.21e-62 197
MS.gene005028.t1 AT2G02350 39.623 265 150 6 4 264 24 282 1.96e-59 191
MS.gene005028.t1 AT1G56240 41.727 278 141 6 7 264 4 280 7.42e-58 186
MS.gene005028.t1 AT1G56250 41.935 279 141 6 7 265 4 281 1.01e-57 186
MS.gene005028.t1 AT2G02320 40.602 266 142 7 6 264 42 298 1.54e-55 181
MS.gene005028.t1 AT2G02310 35.985 264 159 5 6 265 47 304 3.26e-53 175
MS.gene005028.t1 AT2G02300 38.519 270 136 8 4 265 34 281 2.64e-49 164
MS.gene005028.t1 AT5G24560 52.143 140 64 1 6 145 5 141 1.36e-44 149
MS.gene005028.t1 AT5G24560 57.143 49 20 1 217 265 145 192 2.77e-13 67.4
MS.gene005028.t1 AT3G53000 29.091 275 170 7 4 264 21 284 1.62e-30 115
MS.gene005028.t1 AT2G02350 36.310 168 100 5 101 264 1 165 1.74e-28 107
MS.gene005028.t1 AT3G61060 25.271 277 167 7 6 265 27 280 7.63e-23 95.1
MS.gene005028.t1 AT3G61060 24.549 277 170 6 6 265 27 281 6.41e-22 92.8
MS.gene005028.t1 AT1G33920 28.235 170 101 3 100 265 12 164 1.87e-20 85.9
MS.gene005028.t1 AT1G63090 33.333 165 102 4 4 165 26 185 1.15e-19 86.7
MS.gene005028.t1 AT1G12710 27.068 266 177 7 4 264 28 281 2.10e-19 85.9
MS.gene005028.t1 AT4G19840 31.953 169 96 6 99 265 94 245 4.86e-19 84.0
MS.gene005028.t1 AT4G19850 29.282 181 102 5 92 265 57 218 6.03e-19 83.2
MS.gene005028.t1 AT4G19850 29.282 181 102 5 92 265 15 176 6.84e-19 82.0
MS.gene005028.t1 AT5G52120 26.370 292 169 8 1 267 18 288 4.02e-17 79.7
MS.gene005028.t1 AT1G65390 28.070 171 101 3 100 266 259 411 7.51e-16 77.0
MS.gene005028.t1 AT1G12710 34.328 134 82 3 4 134 28 158 1.54e-14 72.8
MS.gene005028.t1 AT4G19850 29.655 145 77 4 92 230 57 182 4.49e-12 64.3

Find 70 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCCGCATATTGAGTATT+TGG 0.191589 1.3:+56401085 None:intergenic
CTAGATCTCTTGCCATTGTT+TGG 0.245415 1.3:-56403298 MS.gene005028:CDS
TAGATCTCTTGCCATTGTTT+GGG 0.268063 1.3:-56403297 MS.gene005028:CDS
TTCAAAATGATTAATGCTTC+GGG 0.296562 1.3:-56401055 MS.gene005028:CDS
AAGCCGCATATTGAGTATTT+GGG 0.318920 1.3:+56401086 None:intergenic
CATCATCGATCATGATAATA+AGG 0.320160 1.3:-56403446 MS.gene005028:intron
GTTCAAAATGATTAATGCTT+CGG 0.326412 1.3:-56401056 MS.gene005028:CDS
TCAACAAGCTTAGCGACTTC+AGG 0.333696 1.3:+56401157 None:intergenic
TACAGACAAGGGGTGGTAAT+TGG 0.334982 1.3:-56400811 MS.gene005028:CDS
TGCGGCCTACCTTCCACATT+TGG 0.361432 1.3:+56400956 None:intergenic
GGATTTCTATGCCTGATTCC+AGG 0.379925 1.3:-56403250 MS.gene005028:intron
TTGTCTGTATCACATTCATC+TGG 0.386190 1.3:+56400825 None:intergenic
CCTCCGATTCTGACGCTGTA+TGG 0.402755 1.3:-56403576 MS.gene005028:CDS
TCAAGAGCTAACCTGGAATC+AGG 0.413242 1.3:+56403239 None:intergenic
TAGTACTAAAATTGTCTGTT+TGG 0.420764 1.3:-56400981 MS.gene005028:CDS
GACAGAGATTCAGGATTTGC+CGG 0.423087 1.3:-56403683 MS.gene005028:CDS
CTAAGCTTGTTGATGTGTGT+TGG 0.438622 1.3:-56401147 MS.gene005028:CDS
TGGAGTTGTACGAGAGACTA+TGG 0.442874 1.3:+56403645 None:intergenic
GTGTGTTGGCTTGAAATTCA+TGG 0.446205 1.3:-56401133 MS.gene005028:CDS
TTCTTGAAGGAATAGAAGTT+AGG 0.449929 1.3:-56400775 MS.gene005028:CDS
GGGTGGTTGGAGATTGAGAT+GGG 0.458032 1.3:-56400884 MS.gene005028:CDS
GGGGTGATGATGAGCGCTAT+TGG 0.463196 1.3:-56403277 MS.gene005028:CDS
ATTCCATACAGCGTCAGAAT+CGG 0.465501 1.3:+56403573 None:intergenic
AAGAGAGGTCTCGTTCTTGA+AGG 0.466484 1.3:-56400788 MS.gene005028:CDS
GTTGGTTAATTGTTATACTT+AGG 0.467370 1.3:+56400752 None:intergenic
ATGATGAGCGCTATTGGAAC+TGG 0.473714 1.3:-56403271 MS.gene005028:CDS
ATGGCGGCAATGCATCCTTC+CGG 0.482859 1.3:+56403664 None:intergenic
CAACAAGCTTAGCGACTTCA+GGG 0.483357 1.3:+56401158 None:intergenic
CGTCCTAGTGTGAGAAGCGA+TGG 0.485861 1.3:-56400905 MS.gene005028:CDS
CATATTGAGTATTTGGGGAC+AGG 0.497456 1.3:+56401092 None:intergenic
TTATCATGATCGATGATGAC+AGG 0.505190 1.3:+56403451 None:intergenic
CGTCCTGCGGATTTATCAGT+TGG 0.505742 1.3:-56401022 MS.gene005028:CDS
GTAGGAGCGTTGGCGAGTAA+AGG 0.512124 1.3:+56403508 None:intergenic
TGGGTGGTTGGAGATTGAGA+TGG 0.517146 1.3:-56400885 MS.gene005028:CDS
GAGTCTCTGCCGGCGTCGAG+TGG 0.524622 1.3:+56403625 None:intergenic
CGTCAGAATCGGAGGCTGAT+CGG 0.538969 1.3:+56403584 None:intergenic
CACCCATCGCTTCTCACACT+AGG 0.543006 1.3:+56400902 None:intergenic
CAGCCGCATGACAGAGTACT+CGG 0.550737 1.3:-56400935 MS.gene005028:CDS
GGGATTTCTGAACCGTCCTG+CGG 0.552108 1.3:-56401035 MS.gene005028:CDS
AGTACTCTGTCATGCGGCTG+CGG 0.560272 1.3:+56400938 None:intergenic
GAGATTCAGGATTTGCCGGA+AGG 0.560627 1.3:-56403679 MS.gene005028:CDS
AGATCTCTTGCCATTGTTTG+GGG 0.561132 1.3:-56403296 MS.gene005028:CDS
GATTTATCAGTTGGTGTCGA+AGG 0.564414 1.3:-56401013 MS.gene005028:CDS
ATGATAGATGAAATATCAGA+AGG 0.573253 1.3:+56403541 None:intergenic
TGTGAGAAGCGATGGGTGGT+TGG 0.576323 1.3:-56400897 MS.gene005028:CDS
CTCATCATCACCCCAAACAA+TGG 0.580299 1.3:+56403286 None:intergenic
TGGATCCAAATGTGGAAGGT+AGG 0.591841 1.3:-56400961 MS.gene005028:CDS
GTGGTTGGAGATTGAGATGG+GGG 0.596500 1.3:-56400882 MS.gene005028:CDS
TTATCAGTTGGTGTCGAAGG+TGG 0.596520 1.3:-56401010 MS.gene005028:CDS
AGCCGCATATTGAGTATTTG+GGG 0.603362 1.3:+56401087 None:intergenic
AGGGGTGGTAATTGGAAGAG+AGG 0.612751 1.3:-56400803 MS.gene005028:CDS
CCATACAGCGTCAGAATCGG+AGG 0.612806 1.3:+56403576 None:intergenic
AGAAACGACAGAGTCTCTGC+CGG 0.615620 1.3:+56403615 None:intergenic
GGTGGTTGGAGATTGAGATG+GGG 0.619250 1.3:-56400883 MS.gene005028:CDS
ACACCAACTGATAAATCCGC+AGG 0.623886 1.3:+56401019 None:intergenic
TGTCTGTTTGGATCCAAATG+TGG 0.625217 1.3:-56400969 MS.gene005028:CDS
GTCCCCAAATACTCAATATG+CGG 0.633956 1.3:-56401089 MS.gene005028:CDS
GTCCTAGTGTGAGAAGCGAT+GGG 0.643186 1.3:-56400904 MS.gene005028:CDS
AGTATTTGGGGACAGGACGA+TGG 0.644084 1.3:+56401099 None:intergenic
TATCATGATCGATGATGACA+GGG 0.656082 1.3:+56403452 None:intergenic
AGATGAATGTGATACAGACA+AGG 0.660761 1.3:-56400823 MS.gene005028:CDS
AATGTGATACAGACAAGGGG+TGG 0.670541 1.3:-56400818 MS.gene005028:CDS
AATCCGAGTACTCTGTCATG+CGG 0.684286 1.3:+56400932 None:intergenic
GATGAATGTGATACAGACAA+GGG 0.695518 1.3:-56400822 MS.gene005028:CDS
TGTTTGGATCCAAATGTGGA+AGG 0.703248 1.3:-56400965 MS.gene005028:CDS
ATGAATGTGATACAGACAAG+GGG 0.709532 1.3:-56400821 MS.gene005028:CDS
CTAGTGTGAGAAGCGATGGG+TGG 0.709944 1.3:-56400901 MS.gene005028:CDS
CAACTGATAAATCCGCAGGA+CGG 0.713336 1.3:+56401023 None:intergenic
CGTACAACTCCACTCGACGC+CGG 0.717247 1.3:-56403634 MS.gene005028:CDS
AGTTGTACGAGAGACTATGG+CGG 0.789727 1.3:+56403648 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+CGG + chr1.3:56403163-56403144 None:intergenic 0.0%
!! AGTTTCATAAAAAATATGAA+AGG + chr1.3:56401532-56401551 None:intergenic 15.0%
!! CATTAAAAAATAAATAGGTT+CGG + chr1.3:56402114-56402133 None:intergenic 15.0%
!! TGATGCATTAAAAAATAAAT+AGG + chr1.3:56402119-56402138 None:intergenic 15.0%
!! AATATGAAAGGACAAAATAA+AGG + chr1.3:56401520-56401539 None:intergenic 20.0%
!! ATAGTGTTTAGTAAAATTAG+CGG + chr1.3:56401559-56401578 None:intergenic 20.0%
!! TTGATTAACTCCTAATTAAT+AGG - chr1.3:56401222-56401241 MS.gene005028:intron 20.0%
!!! AGTCATATCCTTTTTTTTAT+AGG - chr1.3:56401662-56401681 MS.gene005028:intron 20.0%
!!! ATCAATTTTAACTTGAACAA+AGG + chr1.3:56402273-56402292 None:intergenic 20.0%
!!! CACTAAAAGTAAAAACATTT+TGG + chr1.3:56402532-56402551 None:intergenic 20.0%
!!! CTTTTTGAAACTATATTATG+TGG + chr1.3:56402468-56402487 None:intergenic 20.0%
!!! GATTTTTTAAGATGTTTAGT+TGG - chr1.3:56401056-56401075 MS.gene005028:CDS 20.0%
!!! GGTCTGATTTTTATAATTTT+TGG + chr1.3:56402147-56402166 None:intergenic 20.0%
!!! TTTTTCAATTAAGATTGCAT+GGG + chr1.3:56401477-56401496 None:intergenic 20.0%
!!! TTTTTTCAATTAAGATTGCA+TGG + chr1.3:56401478-56401497 None:intergenic 20.0%
! ACTGAACGTTCTTTAAATTT+GGG + chr1.3:56401883-56401902 None:intergenic 25.0%
! ATGATAGATGAAATATCAGA+AGG + chr1.3:56400904-56400923 None:intergenic 25.0%
! CATTCAAGCCTATAAAAAAA+AGG + chr1.3:56401673-56401692 None:intergenic 25.0%
! GTACTATGTTCCTATTAATT+AGG + chr1.3:56401235-56401254 None:intergenic 25.0%
! GTACTCGACAAATAAAATAA+TGG + chr1.3:56402327-56402346 None:intergenic 25.0%
! GTTCAAAATGATTAATGCTT+CGG - chr1.3:56403386-56403405 MS.gene005028:intron 25.0%
! TAATCAATAATGGCTTGATT+CGG + chr1.3:56401271-56401290 None:intergenic 25.0%
! TAGTACTAAAATTGTCTGTT+TGG - chr1.3:56403461-56403480 MS.gene005028:CDS 25.0%
! TCTGTTTGGTAAAAAAATTG+CGG + chr1.3:56401643-56401662 None:intergenic 25.0%
! TTAAGTCTCAAAGAAAACAT+GGG + chr1.3:56402792-56402811 None:intergenic 25.0%
! TTCAAAATGATTAATGCTTC+GGG - chr1.3:56403387-56403406 MS.gene005028:intron 25.0%
! TTGTAATGCAACAAACAAAT+TGG + chr1.3:56402168-56402187 None:intergenic 25.0%
!! AATCAAGCCATTATTGATTA+GGG - chr1.3:56401271-56401290 MS.gene005028:intron 25.0%
!! AGATATTTGAAATGAACAGT+TGG - chr1.3:56402670-56402689 MS.gene005028:intron 25.0%
!! TTTTAGTCATACAAACTTAC+AGG + chr1.3:56401330-56401349 None:intergenic 25.0%
!!! TAAGTAATATATGCTGTTTC+AGG + chr1.3:56403016-56403035 None:intergenic 25.0%
!!! TTTTAACTTGAACAAAGGAA+TGG + chr1.3:56402268-56402287 None:intergenic 25.0%
AAAAAGGATATGACTCTGTT+TGG + chr1.3:56401657-56401676 None:intergenic 30.0%
AACATAGTACTTGTTCTTGT+TGG - chr1.3:56401245-56401264 MS.gene005028:intron 30.0%
AATAGCCATGGTAATTCAAT+GGG + chr1.3:56402831-56402850 None:intergenic 30.0%
ACAGTAATTGATCACTAACA+TGG + chr1.3:56401706-56401725 None:intergenic 30.0%
AGCAATTAGGAACACAAAAA+AGG + chr1.3:56402084-56402103 None:intergenic 30.0%
AGTGATCAATTACTGTTGAT+GGG - chr1.3:56401710-56401729 MS.gene005028:intron 30.0%
ATATATAAGCCATAAGCTAC+TGG + chr1.3:56401435-56401454 None:intergenic 30.0%
ATGACTAAAAAAGATCCGTT+TGG - chr1.3:56401340-56401359 MS.gene005028:intron 30.0%
ATTCAAAAGGAGTAACAAAG+AGG - chr1.3:56401742-56401761 MS.gene005028:intron 30.0%
ATTCCAAATTCTAAGTCACA+GGG + chr1.3:56401936-56401955 None:intergenic 30.0%
CAGTAATTGATCACTAACAT+GGG + chr1.3:56401705-56401724 None:intergenic 30.0%
CAGTTAATTCTTATCAGATG+AGG + chr1.3:56401783-56401802 None:intergenic 30.0%
CATCATCGATCATGATAATA+AGG - chr1.3:56400996-56401015 MS.gene005028:CDS 30.0%
CTGAACGTTCTTTAAATTTG+GGG + chr1.3:56401882-56401901 None:intergenic 30.0%
GACTGAACGTTCTTTAAATT+TGG + chr1.3:56401884-56401903 None:intergenic 30.0%
GTTAAGTCTCAAAGAAAACA+TGG + chr1.3:56402793-56402812 None:intergenic 30.0%
GTTATATCTACACATGTTCA+TGG - chr1.3:56402216-56402235 MS.gene005028:intron 30.0%
TAATAGCCATGGTAATTCAA+TGG + chr1.3:56402832-56402851 None:intergenic 30.0%
TAGTGATCAATTACTGTTGA+TGG - chr1.3:56401709-56401728 MS.gene005028:intron 30.0%
TGAACGTTCTTTAAATTTGG+GGG + chr1.3:56401881-56401900 None:intergenic 30.0%
TGAGACTTAACGTATTGTTA+TGG - chr1.3:56402802-56402821 MS.gene005028:intron 30.0%
TGATACTTAGTTGAAGTGTA+TGG + chr1.3:56401967-56401986 None:intergenic 30.0%
TGATGTCAACTAAATGAGTA+AGG - chr1.3:56402594-56402613 MS.gene005028:intron 30.0%
TGCAAAAGATATAATAGCCA+TGG + chr1.3:56402843-56402862 None:intergenic 30.0%
TTCTTGAAGGAATAGAAGTT+AGG - chr1.3:56403667-56403686 MS.gene005028:CDS 30.0%
TTTCAACAATAATAAGCCTC+AGG + chr1.3:56401035-56401054 None:intergenic 30.0%
TTTCAATTGGAGAAAAAGAG+TGG - chr1.3:56401098-56401117 MS.gene005028:CDS 30.0%
! AGCTAGCTTATAGCTAATAA+AGG + chr1.3:56401603-56401622 None:intergenic 30.0%
! CAGGATCGTTAACTAAATTT+TGG + chr1.3:56403103-56403122 None:intergenic 30.0%
! GAATCAAGCCATTATTGATT+AGG - chr1.3:56401270-56401289 MS.gene005028:intron 30.0%
! GATCGTTAACTAAATTTTGG+AGG + chr1.3:56403100-56403119 None:intergenic 30.0%
! TCATTTTCTCCCATACTTAA+AGG + chr1.3:56402982-56403001 None:intergenic 30.0%
! TGAAATGCAGAGTTTTCAAT+TGG - chr1.3:56401085-56401104 MS.gene005028:CDS 30.0%
!! AGACAATTTTAGTACTACTC+TGG + chr1.3:56403458-56403477 None:intergenic 30.0%
!! GTTTTTACTTTTAGTGTGAC+TGG - chr1.3:56402536-56402555 MS.gene005028:intron 30.0%
!!! AGATAGAGATCTTTTTTGGT+AGG + chr1.3:56400955-56400974 None:intergenic 30.0%
!!! AGCAAGATAGAGATCTTTTT+TGG + chr1.3:56400959-56400978 None:intergenic 30.0%
AAAATTCATAGCTACCACCT+CGG - chr1.3:56401848-56401867 MS.gene005028:intron 35.0%
AAACGGACCCTAATCAATAA+TGG + chr1.3:56401281-56401300 None:intergenic 35.0%
AACTTCATCCTTACACTATC+AGG - chr1.3:56402699-56402718 MS.gene005028:intron 35.0%
AAGCCGCATATTGAGTATTT+GGG + chr1.3:56403359-56403378 None:intergenic 35.0%
AAGCTAATTCCAGTAGCTTA+TGG - chr1.3:56401423-56401442 MS.gene005028:intron 35.0%
AAGTCGATGTCCTTTAAGTA+TGG - chr1.3:56402969-56402988 MS.gene005028:intron 35.0%
ACACTTATCATGAGAAAGTG+AGG - chr1.3:56402937-56402956 MS.gene005028:intron 35.0%
AGAAAACGACAGTTACCAAA+CGG + chr1.3:56401358-56401377 None:intergenic 35.0%
AGATGAATGTGATACAGACA+AGG - chr1.3:56403619-56403638 MS.gene005028:CDS 35.0%
AGTCGATGTCCTTTAAGTAT+GGG - chr1.3:56402970-56402989 MS.gene005028:intron 35.0%
ATGAATGTGATACAGACAAG+GGG - chr1.3:56403621-56403640 MS.gene005028:CDS 35.0%
CAAATGTGTGTCTTACCAAA+CGG + chr1.3:56401298-56401317 None:intergenic 35.0%
CATCGATCATGATAATAAGG+TGG - chr1.3:56400999-56401018 MS.gene005028:CDS 35.0%
GATGAATGTGATACAGACAA+GGG - chr1.3:56403620-56403639 MS.gene005028:CDS 35.0%
GATTCCAAATTCTAAGTCAC+AGG + chr1.3:56401937-56401956 None:intergenic 35.0%
GATTGTCACAACATAAGAGT+TGG + chr1.3:56402888-56402907 None:intergenic 35.0%
GTATGGGAGAAAATGAATGT+TGG - chr1.3:56402986-56403005 MS.gene005028:intron 35.0%
TAAGCCGCATATTGAGTATT+TGG + chr1.3:56403360-56403379 None:intergenic 35.0%
TACTTAGTTGAAGTGTATGG+AGG + chr1.3:56401964-56401983 None:intergenic 35.0%
TAGATCTCTTGCCATTGTTT+GGG - chr1.3:56401145-56401164 MS.gene005028:CDS 35.0%
TATCATGATCGATGATGACA+GGG + chr1.3:56400993-56401012 None:intergenic 35.0%
TGGAGCAAATGTCAGAAAAT+GGG + chr1.3:56402448-56402467 None:intergenic 35.0%
TGTCAACTAAATGAGTAAGG+AGG - chr1.3:56402597-56402616 MS.gene005028:intron 35.0%
TTATCATGATCGATGATGAC+AGG + chr1.3:56400994-56401013 None:intergenic 35.0%
TTGTCTGTATCACATTCATC+TGG + chr1.3:56403620-56403639 None:intergenic 35.0%
! AGGAAAACTGATGATGTTCA+TGG - chr1.3:56402377-56402396 MS.gene005028:intron 35.0%
! ATTATTGATTAGGGTCCGTT+TGG - chr1.3:56401280-56401299 MS.gene005028:intron 35.0%
! CATCTTCTGTGTACTACTTT+TGG - chr1.3:56403254-56403273 MS.gene005028:CDS 35.0%
! TTTGAAATGAACAGTTGGCT+AGG - chr1.3:56402675-56402694 MS.gene005028:intron 35.0%
! TTTTGTGTTCCTAATTGCTG+CGG - chr1.3:56402085-56402104 MS.gene005028:intron 35.0%
!! AATTACTGTTGATGGGTTCT+AGG - chr1.3:56401717-56401736 MS.gene005028:intron 35.0%
!! ATTACTGTTGATGGGTTCTA+GGG - chr1.3:56401718-56401737 MS.gene005028:intron 35.0%
!! GGTTGATAAATTAACAGTGC+AGG + chr1.3:56403122-56403141 None:intergenic 35.0%
AAATTCATAGCTACCACCTC+GGG - chr1.3:56401849-56401868 MS.gene005028:intron 40.0%
ACTTCATCATTCAGGATAGC+AGG - chr1.3:56402345-56402364 MS.gene005028:intron 40.0%
AGATCTCTTGCCATTGTTTG+GGG - chr1.3:56401146-56401165 MS.gene005028:CDS 40.0%
AGCCGCATATTGAGTATTTG+GGG + chr1.3:56403358-56403377 None:intergenic 40.0%
AGCTACAGAAGAAGGATCTT+GGG + chr1.3:56402032-56402051 None:intergenic 40.0%
AGTTTACTAGGCCACATGTA+TGG - chr1.3:56402732-56402751 MS.gene005028:intron 40.0%
ATTCCATACAGCGTCAGAAT+CGG + chr1.3:56400872-56400891 None:intergenic 40.0%
CACAACATAAGAGTTGGAGT+TGG + chr1.3:56402882-56402901 None:intergenic 40.0%
CATATTGAGTATTTGGGGAC+AGG + chr1.3:56403353-56403372 None:intergenic 40.0%
CTAGATCTCTTGCCATTGTT+TGG - chr1.3:56401144-56401163 MS.gene005028:CDS 40.0%
GAGTTAATCAAGAGCTAACC+TGG + chr1.3:56401213-56401232 None:intergenic 40.0%
GGAATCCCATTGAATTACCA+TGG - chr1.3:56402823-56402842 MS.gene005028:intron 40.0%
GGAGCAAATGTCAGAAAATG+GGG + chr1.3:56402447-56402466 None:intergenic 40.0%
GGCCTAGTAAACTTCTACAT+AGG + chr1.3:56402725-56402744 None:intergenic 40.0%
GGCCTATGTAGAAGTTTACT+AGG - chr1.3:56402720-56402739 MS.gene005028:intron 40.0%
GTCCCCAAATACTCAATATG+CGG - chr1.3:56403353-56403372 MS.gene005028:intron 40.0%
GTGGAGCAAATGTCAGAAAA+TGG + chr1.3:56402449-56402468 None:intergenic 40.0%
GTTGACATCATAACTGATGC+AGG + chr1.3:56402584-56402603 None:intergenic 40.0%
TGACCCTGTGACTTAGAATT+TGG - chr1.3:56401930-56401949 MS.gene005028:intron 40.0%
TGTCGAGTACTTCATCATTC+AGG - chr1.3:56402337-56402356 MS.gene005028:intron 40.0%
TGTCTGTTTGGATCCAAATG+TGG - chr1.3:56403473-56403492 MS.gene005028:CDS 40.0%
TGTTTGGATCCAAATGTGGA+AGG - chr1.3:56403477-56403496 MS.gene005028:CDS 40.0%
! AGGTGGTATTCTTTTTCCTG+AGG - chr1.3:56401016-56401035 MS.gene005028:CDS 40.0%
! TACATAGGCCTGATAGTGTA+AGG + chr1.3:56402710-56402729 None:intergenic 40.0%
!! CATGGTCATCATTTTTGTCG+TGG - chr1.3:56402395-56402414 MS.gene005028:intron 40.0%
!! CTAAGCTTGTTGATGTGTGT+TGG - chr1.3:56403295-56403314 MS.gene005028:CDS 40.0%
!! GAGTAAGGAGGTTTTAGTCT+TGG - chr1.3:56402609-56402628 MS.gene005028:intron 40.0%
!! GATTTATCAGTTGGTGTCGA+AGG - chr1.3:56403429-56403448 MS.gene005028:intron 40.0%
!! GTGTGTTGGCTTGAAATTCA+TGG - chr1.3:56403309-56403328 MS.gene005028:CDS 40.0%
!! TCTGTGTACTACTTTTGGAC+AGG - chr1.3:56403259-56403278 MS.gene005028:CDS 40.0%
!!! ATCTTTTTTGGTAGGAGCGT+TGG + chr1.3:56400947-56400966 None:intergenic 40.0%
!!! TAAGGAGGTTTTAGTCTTGG+CGG - chr1.3:56402612-56402631 MS.gene005028:intron 40.0%
AAGAGAGGTCTCGTTCTTGA+AGG - chr1.3:56403654-56403673 MS.gene005028:CDS 45.0%
AATCCGAGTACTCTGTCATG+CGG + chr1.3:56403513-56403532 None:intergenic 45.0%
AATGTGATACAGACAAGGGG+TGG - chr1.3:56403624-56403643 MS.gene005028:CDS 45.0%
ACACCAACTGATAAATCCGC+AGG + chr1.3:56403426-56403445 None:intergenic 45.0%
AGTTGTACGAGAGACTATGG+CGG + chr1.3:56400797-56400816 None:intergenic 45.0%
ATGATGAGCGCTATTGGAAC+TGG - chr1.3:56401171-56401190 MS.gene005028:intron 45.0%
ATGGGGGAGTTCTTCAATTC+GGG - chr1.3:56403576-56403595 MS.gene005028:CDS 45.0%
ATGTCCAGTGTCCATACATG+TGG + chr1.3:56402746-56402765 None:intergenic 45.0%
CAACAAGCTTAGCGACTTCA+GGG + chr1.3:56403287-56403306 None:intergenic 45.0%
CAACTGATAAATCCGCAGGA+CGG + chr1.3:56403422-56403441 None:intergenic 45.0%
CTCATCATCACCCCAAACAA+TGG + chr1.3:56401159-56401178 None:intergenic 45.0%
GACAGAGATTCAGGATTTGC+CGG - chr1.3:56400759-56400778 MS.gene005028:CDS 45.0%
GAGCTACAGAAGAAGGATCT+TGG + chr1.3:56402033-56402052 None:intergenic 45.0%
GATGGGGGAGTTCTTCAATT+CGG - chr1.3:56403575-56403594 MS.gene005028:CDS 45.0%
GCTACAGAAGAAGGATCTTG+GGG + chr1.3:56402031-56402050 None:intergenic 45.0%
GGATTTCTATGCCTGATTCC+AGG - chr1.3:56401192-56401211 MS.gene005028:intron 45.0%
TACAGACAAGGGGTGGTAAT+TGG - chr1.3:56403631-56403650 MS.gene005028:CDS 45.0%
TCAACAAGCTTAGCGACTTC+AGG + chr1.3:56403288-56403307 None:intergenic 45.0%
TCAAGAGCTAACCTGGAATC+AGG + chr1.3:56401206-56401225 None:intergenic 45.0%
TCATCATTCAGGATAGCAGG+TGG - chr1.3:56402348-56402367 MS.gene005028:intron 45.0%
TGGAGTTGTACGAGAGACTA+TGG + chr1.3:56400800-56400819 None:intergenic 45.0%
TGGATCCAAATGTGGAAGGT+AGG - chr1.3:56403481-56403500 MS.gene005028:CDS 45.0%
! ATCCTTCTTCTGTAGCTCTG+CGG - chr1.3:56402035-56402054 MS.gene005028:intron 45.0%
!! TGGGTTCTAGGGCATTCAAA+AGG - chr1.3:56401729-56401748 MS.gene005028:intron 45.0%
!! TTATCAGTTGGTGTCGAAGG+TGG - chr1.3:56403432-56403451 MS.gene005028:intron 45.0%
!! ATATATATATATATATATAC+GGG + chr1.3:56403200-56403181 None:intergenic 5.0%
AACCGCAGAGCTACAGAAGA+AGG + chr1.3:56402040-56402059 None:intergenic 50.0%
AATTTGGGGGTTTGAACCCG+AGG + chr1.3:56401868-56401887 None:intergenic 50.0%
AGAAACGACAGAGTCTCTGC+CGG + chr1.3:56400830-56400849 None:intergenic 50.0%
AGGATAGCAGGTGGTCTTTG+AGG - chr1.3:56402357-56402376 MS.gene005028:intron 50.0%
AGGGGTGGTAATTGGAAGAG+AGG - chr1.3:56403639-56403658 MS.gene005028:CDS 50.0%
AGTATTTGGGGACAGGACGA+TGG + chr1.3:56403346-56403365 None:intergenic 50.0%
CGGAAGTTGGATGAAGAGCA+TGG + chr1.3:56402001-56402020 None:intergenic 50.0%
CGTCCTGCGGATTTATCAGT+TGG - chr1.3:56403420-56403439 MS.gene005028:intron 50.0%
CTCTTCATCCAACTTCCGCT+TGG - chr1.3:56402003-56402022 MS.gene005028:intron 50.0%
GAGATTCAGGATTTGCCGGA+AGG - chr1.3:56400763-56400782 MS.gene005028:CDS 50.0%
GGGTGGTTGGAGATTGAGAT+GGG - chr1.3:56403558-56403577 MS.gene005028:CDS 50.0%
GGTGGTTGGAGATTGAGATG+GGG - chr1.3:56403559-56403578 MS.gene005028:CDS 50.0%
GTCCTAGTGTGAGAAGCGAT+GGG - chr1.3:56403538-56403557 MS.gene005028:CDS 50.0%
GTGGTTGGAGATTGAGATGG+GGG - chr1.3:56403560-56403579 MS.gene005028:CDS 50.0%
TAGGCCACATGTATGGACAC+TGG - chr1.3:56402739-56402758 MS.gene005028:intron 50.0%
TGGGTGGTTGGAGATTGAGA+TGG - chr1.3:56403557-56403576 MS.gene005028:CDS 50.0%
AAGGATCTTGGGGCTCCAAG+CGG + chr1.3:56402021-56402040 None:intergenic 55.0%
AGTACTCTGTCATGCGGCTG+CGG + chr1.3:56403507-56403526 None:intergenic 55.0%
ATGGCGGCAATGCATCCTTC+CGG + chr1.3:56400781-56400800 None:intergenic 55.0%
CACCCATCGCTTCTCACACT+AGG + chr1.3:56403543-56403562 None:intergenic 55.0%
CCATACAGCGTCAGAATCGG+AGG + chr1.3:56400869-56400888 None:intergenic 55.0%
CCTCCGATTCTGACGCTGTA+TGG - chr1.3:56400866-56400885 MS.gene005028:CDS 55.0%
CGTCAGAATCGGAGGCTGAT+CGG + chr1.3:56400861-56400880 None:intergenic 55.0%
CGTCCTAGTGTGAGAAGCGA+TGG - chr1.3:56403537-56403556 MS.gene005028:CDS 55.0%
CTAGTGTGAGAAGCGATGGG+TGG - chr1.3:56403541-56403560 MS.gene005028:CDS 55.0%
GGGATTTCTGAACCGTCCTG+CGG - chr1.3:56403407-56403426 MS.gene005028:intron 55.0%
GTTCGGTTGCCGCAGCAATT+AGG + chr1.3:56402097-56402116 None:intergenic 55.0%
TGCGGCCTACCTTCCACATT+TGG + chr1.3:56403489-56403508 None:intergenic 55.0%
TGTGAGAAGCGATGGGTGGT+TGG - chr1.3:56403545-56403564 MS.gene005028:CDS 55.0%
! CAGCCGCATGACAGAGTACT+CGG - chr1.3:56403507-56403526 MS.gene005028:CDS 55.0%
! GGGGTGATGATGAGCGCTAT+TGG - chr1.3:56401165-56401184 MS.gene005028:intron 55.0%
!! GTAGGAGCGTTGGCGAGTAA+AGG + chr1.3:56400937-56400956 None:intergenic 55.0%
CGTACAACTCCACTCGACGC+CGG - chr1.3:56400808-56400827 MS.gene005028:CDS 60.0%
TTGGGGCTCCAAGCGGAAGT+TGG + chr1.3:56402014-56402033 None:intergenic 60.0%
TTGGGGGTTTGAACCCGAGG+TGG + chr1.3:56401865-56401884 None:intergenic 60.0%
! GAGTCTCTGCCGGCGTCGAG+TGG + chr1.3:56400820-56400839 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 56400757 56403707 56400757 ID=MS.gene005028
chr1.3 mRNA 56400757 56403707 56400757 ID=MS.gene005028.t1;Parent=MS.gene005028
chr1.3 exon 56403447 56403707 56403447 ID=MS.gene005028.t1.exon1;Parent=MS.gene005028.t1
chr1.3 CDS 56403447 56403707 56403447 ID=cds.MS.gene005028.t1;Parent=MS.gene005028.t1
chr1.3 exon 56403251 56403369 56403251 ID=MS.gene005028.t1.exon2;Parent=MS.gene005028.t1
chr1.3 CDS 56403251 56403369 56403251 ID=cds.MS.gene005028.t1;Parent=MS.gene005028.t1
chr1.3 exon 56400757 56401183 56400757 ID=MS.gene005028.t1.exon3;Parent=MS.gene005028.t1
chr1.3 CDS 56400757 56401183 56400757 ID=cds.MS.gene005028.t1;Parent=MS.gene005028.t1
Gene Sequence

>MS.gene005028

ATGACAGAGATTCAGGATTTGCCGGAAGGATGCATTGCCGCCATAGTCTCTCGTACAACTCCACTCGACGCCGGCAGAGACTCTGTCGTTTCTAAGACTTTCCGATCAGCCTCCGATTCTGACGCTGTATGGAATCGTTTTCTACCTTCTGATATTTCATCTATCATCTCACACTCTCCTTTACTCGCCAACGCTCCTACCAAAAAAGATCTCTATCTTGCTCTATCTGATCGCCCTGTCATCATCGATCATGATAATAAGGTGGTATTCTTTTTCCTGAGGCTTATTATTGTTGAAATGATTTTTTAAGATGTTTAGTTGGATGTGTTGAAATGCAGAGTTTTCAATTGGAGAAAAAGAGTGGAAAAAAGTGTTACATGCTTTCTGCTAGATCTCTTGCCATTGTTTGGGGTGATGATGAGCGCTATTGGAACTGGATTTCTATGCCTGATTCCAGGTTAGCTCTTGATTAACTCCTAATTAATAGGAACATAGTACTTGTTCTTGTTGGCCGAATCAAGCCATTATTGATTAGGGTCCGTTTGGTAAGACACACATTTGAGTTTATAGCCTGTAAGTTTGTATGACTAAAAAAGATCCGTTTGGTAACTGTCGTTTTCTCACAATCTATCTTATAGCTTATTTTTATGAGCTTATAGTGTGTTTAAGCTAATTCCAGTAGCTTATGGCTTATATATATCTTTCATCTCAATTTTACCCATGCAATCTTAATTGAAAAAATAAATATTAATTAAATATACCTTTATTTTGTCCTTTCATATTTTTTATGAAACTTCAACCGCTAATTTTACTAAACACTATAAATTCAATCAACTAGCTTATCCTTTATTAGCTATAAGCTAGCTTATAGCTTATTAGCTATCCGCAATTTTTTTACCAAACAGAGTCATATCCTTTTTTTTATAGGCTTGAATGATTCTATTTCCCATGTTAGTGATCAATTACTGTTGATGGGTTCTAGGGCATTCAAAAGGAGTAACAAAGAGGTTGAGTGTGCTCTTTCCTCATCTGATAAGAATTAACTGACTTTTGCTAGCTTCTAATCAAAGTTAGTGAAGAATGATTATATCAAAATTCATAGCTACCACCTCGGGTTCAAACCCCCAAATTTAAAGAACGTTCAGTCAAACAAGTGCTTGCAAAAAATTCTGATGACCCTGTGACTTAGAATTTGGAATCTGTTCCTCCATACACTTCAACTAAGTATCAGCAACACATATCCATGCTCTTCATCCAACTTCCGCTTGGAGCCCCAAGATCCTTCTTCTGTAGCTCTGCGGTTTTTGCTTCATCTGCTGACTTTCCTTTTTTGTGTTCCTAATTGCTGCGGCAACCGAACCTATTTATTTTTTAATGCATCATTTTACCAAAAATTATAAAAATCAGACCAATTTGTTTGTTGCATTACAACTAAAATGTAGTTCTTATTTTAAGACTTGTTATATCTACACATGTTCATGGCGAATTGATTGTGCATTATTTGTTTTCCATTCCTTTGTTCAAGTTAAAATTGATTTCTATAAAGTCATATCTGTAAACTTCTATTCCATTATTTTATTTGTCGAGTACTTCATCATTCAGGATAGCAGGTGGTCTTTGAGGAAAACTGATGATGTTCATGGTCATCATTTTTGTCGTGGTCACTACACTCAAGTTGTATTGAATTCCCCATTTTCTGACATTTGCTCCACATAATATAGTTTCAAAAAGTTGAACAATGTACTCAATAATCTCGAGTTGACTATTAGTCTCCAAAATGTTTTTACTTTTAGTGTGACTGGTAGAATACATACAATTTCTAGACCTGCATCAGTTATGATGTCAACTAAATGAGTAAGGAGGTTTTAGTCTTGGCGGTCGTAGTCTTCATCTTGATACAGTGTTATCTGCTCAGATATTTGAAATGAACAGTTGGCTAGGTAACTTCATCCTTACACTATCAGGCCTATGTAGAAGTTTACTAGGCCACATGTATGGACACTGGACATACATTGAAGATGCACAGCATGTACCCATGTTTTCTTTGAGACTTAACGTATTGTTATGGAATCCCATTGAATTACCATGGCTATTATATCTTTTGCATAATGTTGTCATTTGTCCAACTCCAACTCTTATGTTGTGACAATCGAGCAGTTGTATATGTTGCTTATATATACACACTTATCATGAGAAAGTGAGGCATGTAGAAAAGTCGATGTCCTTTAAGTATGGGAGAAAATGAATGTTGGATTTCCTGAAACAGCATATATTACTTATTCACTGAGAAGTCTGTCATTTTGTTTCAGCTTGAAATACTTAAGTTGTGCTTCGTAACAGCCTCCAAAATTTAGTTAACGATCCTGCACTGTTAATTTATCAACCCGTATATATATATATATATATATATATATATATATATATATATATATATATATATATACTCTGTCTGTCATGTAATGAAACAATTCTCTCAGTTATTATGTTCTAATCTTTGCATCTTCTGTGTACTACTTTTGGACAGGTTCCCTGAAGTCGCTAAGCTTGTTGATGTGTGTTGGCTTGAAATTCATGGTGTGATAAACACCATCGTCCTGTCCCCAAATACTCAATATGCGGCTTATGTTGTGTTCAAAATGATTAATGCTTCGGGATTTCTGAACCGTCCTGCGGATTTATCAGTTGGTGTCGAAGGTGGCCAGAGTAGTACTAAAATTGTCTGTTTGGATCCAAATGTGGAAGGTAGGCCGCAGCCGCATGACAGAGTACTCGGATTGCAACGTCCTAGTGTGAGAAGCGATGGGTGGTTGGAGATTGAGATGGGGGAGTTCTTCAATTCGGGCATAGAAAATGAAGAAATCCAGATGAATGTGATACAGACAAGGGGTGGTAATTGGAAGAGAGGTCTCGTTCTTGAAGGAATAGAAGTTAGGCCTAAGTATAACAATTAA

Protein sequence

>MS.gene005028.t1

MTEIQDLPEGCIAAIVSRTTPLDAGRDSVVSKTFRSASDSDAVWNRFLPSDISSIISHSPLLANAPTKKDLYLALSDRPVIIDHDNKSFQLEKKSGKKCYMLSARSLAIVWGDDERYWNWISMPDSRFPEVAKLVDVCWLEIHGVINTIVLSPNTQYAAYVVFKMINASGFLNRPADLSVGVEGGQSSTKIVCLDPNVEGRPQPHDRVLGLQRPSVRSDGWLEIEMGEFFNSGIENEEIQMNVIQTRGGNWKRGLVLEGIEVRPKYNN