AlfalfaGEDB | MS.gene005012

M. sativa cultivar XinJiangDaYe / MS.gene005012

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00646.36 PF14299.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005012.t1	XP_003590868.1	94.8	309	16	0	1	309	2	310	1.40E-169	605.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005012.t1	Q9FLU7	44.3	296	117	4	10	305	1	248	1.5e-63	244.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005012.t1	G7I5J8	94.8	309	16	0	1	309	2	310	9.8e-170	605.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene005012	MS.gene51496	PPI
MS.gene005012	MS.gene51487	PPI
MS.gene005012	MS.gene49090	PPI
MS.gene52532	MS.gene005012	PPI
MS.gene005012	MS.gene74877	PPI
MS.gene005012	MS.gene005066	PPI
MS.gene005012	MS.gene069492	PPI
MS.gene74872	MS.gene005012	PPI
MS.gene41431	MS.gene005012	PPI
MS.gene74860	MS.gene005012	PPI
MS.gene005035	MS.gene005012	PPI
MS.gene005012	MS.gene95381	PPI
MS.gene74859	MS.gene005012	PPI
MS.gene005012	MS.gene24084	PPI
MS.gene74863	MS.gene005012	PPI
MS.gene005019	MS.gene005012	PPI
MS.gene005012	MS.gene005035	PPI
MS.gene005012	MS.gene52530	PPI
MS.gene74867	MS.gene005012	PPI
MS.gene005012	MS.gene94933	PPI
MS.gene005012	MS.gene96708	PPI
MS.gene005012	MS.gene74864	PPI
MS.gene07569	MS.gene005012	PPI
MS.gene005012	MS.gene43943	PPI
MS.gene005012	MS.gene058740	PPI
MS.gene005012	MS.gene006296	PPI
MS.gene005012	MS.gene005020	PPI
MS.gene005012	MS.gene63582	PPI
MS.gene059798	MS.gene005012	PPI
MS.gene005012	MS.gene41431	PPI
MS.gene005012	MS.gene49085	PPI
MS.gene005012	MS.gene74881	PPI
MS.gene005030	MS.gene005012	PPI
MS.gene005012	MS.gene49086	PPI
MS.gene005012	MS.gene34488	PPI
MS.gene005023	MS.gene005012	PPI
MS.gene005012	MS.gene04280	PPI
MS.gene005012	MS.gene74913	PPI
MS.gene51502	MS.gene005012	PPI
MS.gene07555	MS.gene005012	PPI
MS.gene005012	MS.gene000006	PPI
MS.gene005012	MS.gene005013	PPI
MS.gene005012	MS.gene07250	PPI
MS.gene005012	MS.gene27114	PPI
MS.gene005012	MS.gene52533	PPI
MS.gene67769	MS.gene005012	PPI
MS.gene67762	MS.gene005012	PPI
MS.gene005012	MS.gene07580	PPI
MS.gene005012	MS.gene07557	PPI
MS.gene005012	MS.gene005552	PPI
MS.gene005012	MS.gene74912	PPI
MS.gene005012	MS.gene009359	PPI
MS.gene005012	MS.gene005034	PPI
MS.gene34490	MS.gene005012	PPI
MS.gene005012	MS.gene07572	PPI
MS.gene74878	MS.gene005012	PPI
MS.gene005012	MS.gene74868	PPI
MS.gene005012	MS.gene005032	PPI
MS.gene005012	MS.gene07577	PPI
MS.gene74911	MS.gene005012	PPI
MS.gene74873	MS.gene005012	PPI
MS.gene49088	MS.gene005012	PPI
MS.gene005012	MS.gene07581	PPI
MS.gene005012	MS.gene068736	PPI
MS.gene07578	MS.gene005012	PPI
MS.gene005012	MS.gene005027	PPI
MS.gene005012	MS.gene74858	PPI
MS.gene005012	MS.gene43942	PPI
MS.gene74998	MS.gene005012	PPI
MS.gene005012	MS.gene006298	PPI
MS.gene058615	MS.gene005012	PPI
MS.gene07559	MS.gene005012	PPI
MS.gene005012	MS.gene49185	PPI
MS.gene49186	MS.gene005012	PPI
MS.gene005012	MS.gene74875	PPI
MS.gene74876	MS.gene005012	PPI
MS.gene005012	MS.gene41430	PPI
MS.gene005012	MS.gene07556	PPI
MS.gene005012	MS.gene005033	PPI
MS.gene005012	MS.gene41433	PPI
MS.gene005012	MS.gene005028	PPI
MS.gene005012	MS.gene88931	PPI
MS.gene005012	MS.gene006294	PPI
MS.gene07583	MS.gene005012	PPI
MS.gene005012	MS.gene74880	PPI
MS.gene005012	MS.gene07585	PPI
MS.gene005012	MS.gene07586	PPI
MS.gene005012	MS.gene07571	PPI
MS.gene005012	MS.gene005068	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005012.t1	MTR_1g079140	94.822	309	16	0	1	309	2	310	0.0	601
MS.gene005012.t1	MTR_1g079130	85.787	197	24	2	113	309	1	193	6.91e-120	342
MS.gene005012.t1	MTR_1g079260	52.203	295	114	7	12	305	4	272	1.42e-94	281
MS.gene005012.t1	MTR_1g079370	49.498	299	111	6	11	305	3	265	4.07e-94	280
MS.gene005012.t1	MTR_1g079380	47.492	299	123	5	11	308	3	268	1.68e-87	264
MS.gene005012.t1	MTR_1g100597	48.322	298	127	6	12	308	4	275	3.77e-85	257
MS.gene005012.t1	MTR_1g079460	47.475	297	123	5	10	305	2	266	4.94e-83	251
MS.gene005012.t1	MTR_1g079180	47.492	299	117	8	11	305	3	265	5.47e-82	249
MS.gene005012.t1	MTR_1g079200	46.980	298	119	6	11	305	3	264	3.40e-81	247
MS.gene005012.t1	MTR_1g079410	45.752	306	128	5	5	305	1	273	2.10e-77	237
MS.gene005012.t1	MTR_1g079850	44.040	302	147	5	10	308	2	284	1.61e-74	230
MS.gene005012.t1	MTR_1g079230	44.816	299	137	6	12	308	4	276	1.46e-72	225
MS.gene005012.t1	MTR_1g100613	46.743	261	118	4	28	288	5	244	8.48e-71	219
MS.gene005012.t1	MTR_1g079250	44.737	304	135	8	12	308	4	281	6.02e-68	214
MS.gene005012.t1	MTR_1g026510	41.584	303	151	5	12	308	4	286	2.10e-67	213
MS.gene005012.t1	MTR_7g112550	42.466	292	149	10	15	305	10	283	4.06e-67	211
MS.gene005012.t1	MTR_7g112560	41.438	292	134	5	15	306	4	258	4.33e-65	206
MS.gene005012.t1	MTR_3g452600	40.816	294	138	5	12	305	10	267	5.82e-65	206
MS.gene005012.t1	MTR_1g083580	40.273	293	151	8	15	305	11	281	7.93e-65	206
MS.gene005012.t1	MTR_1g079400	40.614	293	146	4	15	306	15	280	6.06e-64	203
MS.gene005012.t1	MTR_3g006850	43.548	310	148	10	12	305	17	315	5.95e-63	202
MS.gene005012.t1	MTR_4g023570	39.456	294	117	6	15	306	4	238	2.36e-59	190
MS.gene005012.t1	MTR_2g079100	39.590	293	131	6	14	302	11	261	2.66e-56	183
MS.gene005012.t1	MTR_1g079350	38.721	297	154	7	12	305	4	275	2.83e-54	178
MS.gene005012.t1	MTR_3g450990	36.774	310	144	8	12	305	10	283	5.24e-53	175
MS.gene005012.t1	MTR_1g079340	37.540	309	152	10	12	305	43	325	2.26e-42	149
MS.gene005012.t1	MTR_7g096300	39.223	283	119	9	12	285	4	242	5.00e-42	154
MS.gene005012.t1	MTR_1g078470	43.216	199	76	6	109	305	21	184	2.05e-39	137
MS.gene005012.t1	MTR_1g079350	36.797	231	108	9	12	222	4	216	1.17e-29	112
MS.gene005012.t1	MTR_1g079240	37.019	208	90	5	99	305	12	179	3.46e-29	110
MS.gene005012.t1	MTR_7g103380	26.821	302	171	8	14	304	21	283	1.40e-26	106
MS.gene005012.t1	MTR_1g101390	38.462	143	85	2	14	156	30	169	2.92e-24	100
MS.gene005012.t1	MTR_1g076870	39.189	148	74	5	140	285	2	135	4.87e-23	92.8
MS.gene005012.t1	MTR_4g083970	26.587	252	131	6	56	305	91	290	8.27e-23	96.3
MS.gene005012.t1	MTR_0002s0020	30.806	211	128	5	14	209	24	231	9.70e-23	95.9
MS.gene005012.t1	MTR_0113s0040	27.358	212	131	5	14	210	24	227	1.80e-21	92.4
MS.gene005012.t1	MTR_4g102770	36.552	145	86	3	14	156	21	161	1.91e-19	86.7
MS.gene005012.t1	MTR_5g010800	27.189	217	131	6	9	208	14	220	2.04e-19	86.7
MS.gene005012.t1	MTR_7g096310	46.154	104	46	3	78	176	43	141	5.41e-19	82.8
MS.gene005012.t1	MTR_2g042540	42.857	105	56	2	12	115	4	105	8.38e-19	81.3
MS.gene005012.t1	MTR_1g078460	47.191	89	41	2	12	99	67	150	8.86e-17	76.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005012.t1	AT2G02230	41.935	310	156	7	12	305	32	333	5.84e-77	238
MS.gene005012.t1	AT2G02250	44.218	294	126	6	12	304	47	303	3.14e-76	236
MS.gene005012.t1	AT2G02360	41.391	302	135	5	5	304	7	268	9.08e-74	228
MS.gene005012.t1	AT2G02240	43.919	296	123	7	12	304	61	316	1.39e-72	227
MS.gene005012.t1	AT2G02340	41.806	299	137	6	11	304	35	301	6.61e-72	224
MS.gene005012.t1	AT1G09155	41.156	294	154	6	15	305	3	280	5.23e-66	209
MS.gene005012.t1	AT1G80110	40.816	294	134	6	12	304	1	255	1.11e-62	199
MS.gene005012.t1	AT1G56240	40.956	293	154	6	15	304	4	280	1.21e-60	195
MS.gene005012.t1	AT1G56250	41.695	295	153	6	15	306	4	282	1.60e-60	194
MS.gene005012.t1	AT2G02350	37.966	295	141	6	14	304	26	282	3.05e-54	179
MS.gene005012.t1	AT2G02320	36.842	304	144	9	8	304	36	298	3.63e-54	179
MS.gene005012.t1	AT2G02310	34.653	303	146	5	12	305	45	304	1.24e-51	172
MS.gene005012.t1	AT2G02300	36.570	309	134	10	5	305	27	281	5.45e-49	165
MS.gene005012.t1	AT5G24560	52.381	147	63	1	10	156	1	140	1.80e-48	160
MS.gene005012.t1	AT5G24560	52.632	57	26	1	249	305	137	192	1.73e-13	68.6
MS.gene005012.t1	AT3G53000	27.483	302	168	8	14	304	23	284	1.05e-28	112
MS.gene005012.t1	AT3G61060	37.762	143	86	2	14	156	27	166	5.20e-25	102
MS.gene005012.t1	AT3G61060	36.364	143	89	1	14	156	27	167	2.73e-24	100
MS.gene005012.t1	AT1G63090	33.125	160	101	3	14	173	28	181	5.43e-19	85.5
MS.gene005012.t1	AT1G12710	27.602	221	135	6	14	219	30	240	9.69e-17	79.3
MS.gene005012.t1	AT5G52120	28.251	223	132	9	12	214	21	235	1.66e-16	78.6
MS.gene005012.t1	AT1G12710	28.249	177	121	4	14	188	30	202	2.44e-12	67.0

Find 91 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTATTTAAGTCGTGTGCTTT+TGG	0.256893	1.3:-56222204	MS.gene005012:CDS
ATCAATATTTACCTTGAATC+TGG	0.267891	1.3:+56222890	None:intergenic
TTTCAACATGAGTTAGTCTT+AGG	0.272279	1.3:+56221814	None:intergenic
TTAACATAAAGATCCTTCTT+AGG	0.300044	1.3:+56223234	None:intergenic
TGATGTTGCCAGACTCTCTT+TGG	0.301539	1.3:-56223379	MS.gene005012:CDS
TTGTTCAAGGAATTGAAATA+AGG	0.306864	1.3:-56221837	MS.gene005012:CDS
GTTCCTCGCTCCCGCACTAC+TGG	0.313084	1.3:-56222063	MS.gene005012:CDS
CGAGGAGTTTGTTTATTGTA+TGG	0.313317	1.3:-56222949	MS.gene005012:CDS
CGCTGAATCTGATTCCGTTT+GGG	0.321898	1.3:-56223334	MS.gene005012:CDS
CCGCTGAATCTGATTCCGTT+TGG	0.370563	1.3:-56223335	MS.gene005012:CDS
CACCCATCTGCTCTCTCCTT+TGG	0.374182	1.3:+56221964	None:intergenic
TTTCAATTGGATAAAGTTGA+TGG	0.381470	1.3:-56222995	MS.gene005012:CDS
TATGCTCCGTACAAAGTCTT+TGG	0.387723	1.3:+56222231	None:intergenic
GTGTGTGTTGGTTTGAAATC+CGG	0.388938	1.3:-56222281	MS.gene005012:CDS
TCTTATAGAGAATGGCAAAA+AGG	0.392809	1.3:-56223193	MS.gene005012:intron
GTGGAATTAGAGCTTTCAAT+TGG	0.395595	1.3:-56223008	MS.gene005012:intron
ACTTTCTGTCCTTCCTAAGA+AGG	0.410241	1.3:-56223247	MS.gene005012:CDS
GGGGAGATACTCCGAGGTAT+TGG	0.424153	1.3:-56222928	MS.gene005012:CDS
ACACTTTCTGTCGGTTCGAC+TGG	0.424281	1.3:+56222006	None:intergenic
TGGGTGGTTGGAGATGGAAC+TGG	0.433776	1.3:-56221947	MS.gene005012:CDS
GAAGAAATGCTATATGTTAT+CGG	0.434218	1.3:-56222972	MS.gene005012:CDS
TGTGGAGCGAAATGTATTCT+TGG	0.443243	1.3:-56222121	MS.gene005012:CDS
TGATGAAACCAAAGAGAGTC+TGG	0.447781	1.3:+56223371	None:intergenic
AAGGGTGGTCTTGTTGTTCA+AGG	0.455014	1.3:-56221850	MS.gene005012:CDS
GAGGAGTTTGTTTATTGTAT+GGG	0.456794	1.3:-56222948	MS.gene005012:CDS
GTTGTTGTTATTGAAGAAGA+AGG	0.459058	1.3:-56223465	MS.gene005012:CDS
ATTTACCTTGAATCTGGATC+AGG	0.459124	1.3:+56222896	None:intergenic
GGTCAAAGGTGGTGGTTGGA+AGG	0.462655	1.3:-56221869	MS.gene005012:CDS
GAAGCCTCCATTGTCATTGC+TGG	0.466915	1.3:-56222153	MS.gene005012:CDS
GGTTCGACTGGTGCTTCTAC+AGG	0.471350	1.3:+56222018	None:intergenic
TATCCAAAGGAGAGAGCAGA+TGG	0.474521	1.3:-56221967	MS.gene005012:CDS
ATGGCTGATATTCAAATCCA+TGG	0.481354	1.3:+56222178	None:intergenic
GTCAAAGGTGGTGGTTGGAA+GGG	0.482667	1.3:-56221868	MS.gene005012:CDS
GTTGGTTTGAAATCCGGGGC+TGG	0.485855	1.3:-56222275	MS.gene005012:CDS
GGAGAGAGCAGATGGGTGGT+TGG	0.487110	1.3:-56221959	MS.gene005012:CDS
AAAGGTGGTGGTTGGAAGGG+TGG	0.488197	1.3:-56221865	MS.gene005012:CDS
TGTGTGTTGGTTTGAAATCC+GGG	0.488813	1.3:-56222280	MS.gene005012:CDS
AGCAGATGGGTGGTTGGAGA+TGG	0.490784	1.3:-56221953	MS.gene005012:CDS
AAACCGCTTCTTATAGAGAA+TGG	0.492385	1.3:-56223201	MS.gene005012:CDS
GTTTGTGAGGTCAAAGGTGG+TGG	0.499525	1.3:-56221877	MS.gene005012:CDS
GGGTGGTTGGAGATGGAACT+GGG	0.502668	1.3:-56221946	MS.gene005012:CDS
TTATCTCCAAAGACTTTGTA+CGG	0.508567	1.3:-56222237	MS.gene005012:CDS
TGCGGGAGCGAGGAACAATC+TGG	0.517001	1.3:+56222070	None:intergenic
TTCCTCGCTCCCGCACTACT+GGG	0.520429	1.3:-56222062	MS.gene005012:CDS
CTGGGAGAGTTCTTCAATGA+AGG	0.525045	1.3:-56221928	MS.gene005012:CDS
GAATTTCATGATCTACCTGA+AGG	0.533212	1.3:-56223438	MS.gene005012:CDS
CATAAAGATCCTTCTTAGGA+AGG	0.533612	1.3:+56223238	None:intergenic
GTGAGGTCAAAGGTGGTGGT+TGG	0.539242	1.3:-56221873	MS.gene005012:CDS
CTTACGAGTTCAGCCGCCTC+AGG	0.539986	1.3:+56222303	None:intergenic
GAGATACTCCGAGGTATTGG+AGG	0.542088	1.3:-56222925	MS.gene005012:CDS
GATGATAAGCAGGTGGACAT+AGG	0.544574	1.3:-56221901	MS.gene005012:CDS
TTCAATTGGATAAAGTTGAT+GGG	0.546457	1.3:-56222994	MS.gene005012:CDS
AGTGAATATCCCAGTAGTGC+GGG	0.551157	1.3:+56222053	None:intergenic
AGGAGTTTGTTTATTGTATG+GGG	0.552502	1.3:-56222947	MS.gene005012:CDS
ATACTCCGAGGTATTGGAGG+TGG	0.553518	1.3:-56222922	MS.gene005012:CDS
TTGCCATTCTCTATAAGAAG+CGG	0.557636	1.3:+56223198	None:intergenic
CTGAACTCGTAAGTGTGTGT+TGG	0.561507	1.3:-56222293	MS.gene005012:CDS
GGATTCCTGATCCAGATTCA+AGG	0.561889	1.3:-56222901	MS.gene005012:intron
GTATTCTTGGATGCGGAAAG+AGG	0.564554	1.3:-56222108	MS.gene005012:CDS
TGAAGGAGGAGATGATAAGC+AGG	0.574291	1.3:-56221911	MS.gene005012:CDS
ATCCCAGTAGTGCGGGAGCG+AGG	0.588103	1.3:+56222060	None:intergenic
GCGAAATGTATTCTTGGATG+CGG	0.589696	1.3:-56222115	MS.gene005012:CDS
AAAATGCAGGTTTCCTGAGG+CGG	0.600110	1.3:-56222316	MS.gene005012:intron
ATAGGTGTTTGTGAGGTCAA+AGG	0.607193	1.3:-56221883	MS.gene005012:CDS
TGATAGTGTTGATCCAGCCC+CGG	0.609203	1.3:+56222262	None:intergenic
TGGCTGATATTCAAATCCAT+GGG	0.614295	1.3:+56222179	None:intergenic
ATCACCTCCAGCAATGACAA+TGG	0.618256	1.3:+56222146	None:intergenic
GATTATCTCTAAATCTGATG+CGG	0.618260	1.3:-56223283	MS.gene005012:CDS
AGATCGTCTACACTTTCTGT+CGG	0.618327	1.3:+56221997	None:intergenic
GGAGAGTTCTTCAATGAAGG+AGG	0.620684	1.3:-56221925	MS.gene005012:CDS
AAGCACACGACTTAAATACA+AGG	0.633044	1.3:+56222208	None:intergenic
ATGACAATGGAGGCTTCACA+TGG	0.637596	1.3:+56222159	None:intergenic
GAGAGTCTGGCAACATCACG+TGG	0.638064	1.3:+56223384	None:intergenic
ATAATCGAGTGATAATCAGA+AGG	0.641855	1.3:+56223300	None:intergenic
GCCTCCATTGTCATTGCTGG+AGG	0.652619	1.3:-56222150	MS.gene005012:CDS
CGATCTGCAGAAGTATCCAA+AGG	0.652956	1.3:-56221980	MS.gene005012:CDS
GAGTGAATATCCCAGTAGTG+CGG	0.658404	1.3:+56222052	None:intergenic
ATCCAAAGGAGAGAGCAGAT+GGG	0.659963	1.3:-56221966	MS.gene005012:CDS
GGAATCCACCTCCAATACCT+CGG	0.660263	1.3:+56222917	None:intergenic
GTGTGTTGGTTTGAAATCCG+GGG	0.665551	1.3:-56222279	MS.gene005012:CDS
CCAAACGGAATCAGATTCAG+CGG	0.667320	1.3:+56223335	None:intergenic
GGTGGACATAGGTGTTTGTG+AGG	0.667925	1.3:-56221890	MS.gene005012:CDS
CAAAGGAGAGAGCAGATGGG+TGG	0.672349	1.3:-56221963	MS.gene005012:CDS
ACCTCCAGCAATGACAATGG+AGG	0.673224	1.3:+56222149	None:intergenic
AGGAGGAGATGATAAGCAGG+TGG	0.681884	1.3:-56221908	MS.gene005012:CDS
CATTGCTGGAGGTGATACTG+TGG	0.688260	1.3:-56222139	MS.gene005012:CDS
AACGGAATCAGATTCAGCGG+CGG	0.691393	1.3:+56223338	None:intergenic
GGTGTTTGTGAGGTCAAAGG+TGG	0.696595	1.3:-56221880	MS.gene005012:CDS
AATGCTATATGTTATCGGCG+AGG	0.704244	1.3:-56222967	MS.gene005012:CDS
TTGTATGGGGAGATACTCCG+AGG	0.719053	1.3:-56222934	MS.gene005012:CDS
TGGATGCGGAAAGAGGACGA+AGG	0.783182	1.3:-56222101	MS.gene005012:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATACTATAAACATTTAATTA+AGG	-	chr1.3:56222805-56222824	MS.gene005012:intron	10.0%
!!	CATATTATATTAAATTATGT+AGG	-	chr1.3:56222532-56222551	MS.gene005012:intron	10.0%
!!	ACAAAAAAACAAAAACAAAT+TGG	+	chr1.3:56222130-56222149	None:intergenic	15.0%
!!!	GTGTTAATTTATATTTTTCT+TGG	-	chr1.3:56222231-56222250	MS.gene005012:CDS	15.0%
!!!	TGATTTATTTTTGAAATTGT+AGG	-	chr1.3:56222413-56222432	MS.gene005012:intron	15.0%
!!	AAAAAACAAAAACAAATTGG+AGG	+	chr1.3:56222127-56222146	None:intergenic	20.0%
!!	TAATAAAGAACTAATAAGCA+TGG	+	chr1.3:56222839-56222858	None:intergenic	20.0%
!!!	ATTAGTTCTTTATTATAGTC+AGG	-	chr1.3:56222844-56222863	MS.gene005012:intron	20.0%
!!!	ATTTTTGAAATTGTAGGTAT+TGG	-	chr1.3:56222419-56222438	MS.gene005012:intron	20.0%
!	ATCAATATTTACCTTGAATC+TGG	+	chr1.3:56222397-56222416	None:intergenic	25.0%
!	GAAGAAATGCTATATGTTAT+CGG	-	chr1.3:56222312-56222331	MS.gene005012:intron	25.0%
!	TTAACATAAAGATCCTTCTT+AGG	+	chr1.3:56222053-56222072	None:intergenic	25.0%
!	TTGTTCAAGGAATTGAAATA+AGG	-	chr1.3:56223447-56223466	MS.gene005012:CDS	25.0%
!	TTTCAATTGGATAAAGTTGA+TGG	-	chr1.3:56222289-56222308	MS.gene005012:CDS	25.0%
!!	TTCAATTGGATAAAGTTGAT+GGG	-	chr1.3:56222290-56222309	MS.gene005012:CDS	25.0%
!!!	TTGTAGGTATTGGTTAATTT+TGG	-	chr1.3:56222429-56222448	MS.gene005012:intron	25.0%
	AACAAAAACAAATTGGAGGT+AGG	+	chr1.3:56222123-56222142	None:intergenic	30.0%
	AATATGCTGAAAACAGCTTA+TGG	+	chr1.3:56222682-56222701	None:intergenic	30.0%
	ACTGGTCAATTTAATGACTA+AGG	+	chr1.3:56222922-56222941	None:intergenic	30.0%
	AGGCAAAAATTTATCCCAAA+CGG	+	chr1.3:56221967-56221986	None:intergenic	30.0%
	ATAATCGAGTGATAATCAGA+AGG	+	chr1.3:56221987-56222006	None:intergenic	30.0%
	ATATGCTGAAAACAGCTTAT+GGG	+	chr1.3:56222681-56222700	None:intergenic	30.0%
	GATTATCTCTAAATCTGATG+CGG	-	chr1.3:56222001-56222020	MS.gene005012:CDS	30.0%
	GTCGATATTGTTAGACTAAA+CGG	+	chr1.3:56222173-56222192	None:intergenic	30.0%
	TCATATACTTCATGCATGTT+TGG	-	chr1.3:56222579-56222598	MS.gene005012:intron	30.0%
	TCTTATAGAGAATGGCAAAA+AGG	-	chr1.3:56222091-56222110	MS.gene005012:CDS	30.0%
	TTATCTCCAAAGACTTTGTA+CGG	-	chr1.3:56223047-56223066	MS.gene005012:intron	30.0%
	TTCCACATAAAACAAAACCA+CGG	+	chr1.3:56222262-56222281	None:intergenic	30.0%
!	AGGAGTTTGTTTATTGTATG+GGG	-	chr1.3:56222337-56222356	MS.gene005012:intron	30.0%
!	CTTAGATTTTGTTCAATCAC+TGG	+	chr1.3:56222940-56222959	None:intergenic	30.0%
!	GAGGAGTTTGTTTATTGTAT+GGG	-	chr1.3:56222336-56222355	MS.gene005012:intron	30.0%
!	GTTGTTGTTATTGAAGAAGA+AGG	-	chr1.3:56221819-56221838	MS.gene005012:CDS	30.0%
!!	AGCTGTTTTCATAAGTTACA+TGG	+	chr1.3:56222717-56222736	None:intergenic	30.0%
!!!	TGTTTTTTTGTTGTGAGTCT+CGG	-	chr1.3:56222139-56222158	MS.gene005012:CDS	30.0%
	AAACCGCTTCTTATAGAGAA+TGG	-	chr1.3:56222083-56222102	MS.gene005012:CDS	35.0%
	AAGCACACGACTTAAATACA+AGG	+	chr1.3:56223079-56223098	None:intergenic	35.0%
	ATGGCTGATATTCAAATCCA+TGG	+	chr1.3:56223109-56223128	None:intergenic	35.0%
	ATTTACCTTGAATCTGGATC+AGG	+	chr1.3:56222391-56222410	None:intergenic	35.0%
	CATAAAGATCCTTCTTAGGA+AGG	+	chr1.3:56222049-56222068	None:intergenic	35.0%
	CTAAGCGATTCAAAAAATGC+AGG	-	chr1.3:56222955-56222974	MS.gene005012:CDS	35.0%
	GAATTTCATGATCTACCTGA+AGG	-	chr1.3:56221846-56221865	MS.gene005012:CDS	35.0%
	GTGGAATTAGAGCTTTCAAT+TGG	-	chr1.3:56222276-56222295	MS.gene005012:CDS	35.0%
	TGGCTGATATTCAAATCCAT+GGG	+	chr1.3:56223108-56223127	None:intergenic	35.0%
	TTGCCATTCTCTATAAGAAG+CGG	+	chr1.3:56222089-56222108	None:intergenic	35.0%
!	CGAGGAGTTTGTTTATTGTA+TGG	-	chr1.3:56222335-56222354	MS.gene005012:intron	35.0%
!	GTATTTAAGTCGTGTGCTTT+TGG	-	chr1.3:56223080-56223099	MS.gene005012:intron	35.0%
!	TATTTTTCTTGGCTAATCCG+TGG	-	chr1.3:56222242-56222261	MS.gene005012:CDS	35.0%
!!!	ATCCGTGGTTTTGTTTTATG+TGG	-	chr1.3:56222257-56222276	MS.gene005012:CDS	35.0%
!!!	GTTTTTTTGTTGTGAGTCTC+GGG	-	chr1.3:56222140-56222159	MS.gene005012:CDS	35.0%
	AATGCTATATGTTATCGGCG+AGG	-	chr1.3:56222317-56222336	MS.gene005012:intron	40.0%
	ACTTTCTGTCCTTCCTAAGA+AGG	-	chr1.3:56222037-56222056	MS.gene005012:CDS	40.0%
	AGATCGTCTACACTTTCTGT+CGG	+	chr1.3:56223290-56223309	None:intergenic	40.0%
	ATAGGTGTTTGTGAGGTCAA+AGG	-	chr1.3:56223401-56223420	MS.gene005012:CDS	40.0%
	CAAAAAATGCAGGTTTCCTG+AGG	-	chr1.3:56222965-56222984	MS.gene005012:CDS	40.0%
	GCGAAATGTATTCTTGGATG+CGG	-	chr1.3:56223169-56223188	MS.gene005012:intron	40.0%
	TATGCTCCGTACAAAGTCTT+TGG	+	chr1.3:56223056-56223075	None:intergenic	40.0%
	TCCTTGAAGACTAATGCGTT+TGG	-	chr1.3:56222873-56222892	MS.gene005012:intron	40.0%
	TGATGAAACCAAAGAGAGTC+TGG	+	chr1.3:56221916-56221935	None:intergenic	40.0%
	TGTGGAGCGAAATGTATTCT+TGG	-	chr1.3:56223163-56223182	MS.gene005012:intron	40.0%
!	ACGTTTTCAATGCAACCTTC+AGG	+	chr1.3:56221864-56221883	None:intergenic	40.0%
!!	ACCAAACGCATTAGTCTTCA+AGG	+	chr1.3:56222877-56222896	None:intergenic	40.0%
!!	GTGTGTGTTGGTTTGAAATC+CGG	-	chr1.3:56223003-56223022	MS.gene005012:intron	40.0%
!!	TGTGTGTTGGTTTGAAATCC+GGG	-	chr1.3:56223004-56223023	MS.gene005012:intron	40.0%
	AAAATGCAGGTTTCCTGAGG+CGG	-	chr1.3:56222968-56222987	MS.gene005012:CDS	45.0%
	AGTGAATATCCCAGTAGTGC+GGG	+	chr1.3:56223234-56223253	None:intergenic	45.0%
	ATCACCTCCAGCAATGACAA+TGG	+	chr1.3:56223141-56223160	None:intergenic	45.0%
	ATCCAAAGGAGAGAGCAGAT+GGG	-	chr1.3:56223318-56223337	MS.gene005012:CDS	45.0%
	ATGACAATGGAGGCTTCACA+TGG	+	chr1.3:56223128-56223147	None:intergenic	45.0%
	CCAAACGGAATCAGATTCAG+CGG	+	chr1.3:56221952-56221971	None:intergenic	45.0%
	CGCTGAATCTGATTCCGTTT+GGG	-	chr1.3:56221950-56221969	MS.gene005012:CDS	45.0%
	CTCGACGAGTATTTGTGAGA+CGG	-	chr1.3:56222618-56222637	MS.gene005012:intron	45.0%
	CTGAACTCGTAAGTGTGTGT+TGG	-	chr1.3:56222991-56223010	MS.gene005012:CDS	45.0%
	CTGGGAGAGTTCTTCAATGA+AGG	-	chr1.3:56223356-56223375	MS.gene005012:CDS	45.0%
	GAGTATTTGTGAGACGGTGT+AGG	-	chr1.3:56222624-56222643	MS.gene005012:intron	45.0%
	GAGTGAATATCCCAGTAGTG+CGG	+	chr1.3:56223235-56223254	None:intergenic	45.0%
	GATGATAAGCAGGTGGACAT+AGG	-	chr1.3:56223383-56223402	MS.gene005012:CDS	45.0%
	GGAGAGTTCTTCAATGAAGG+AGG	-	chr1.3:56223359-56223378	MS.gene005012:CDS	45.0%
	GGATTCCTGATCCAGATTCA+AGG	-	chr1.3:56222383-56222402	MS.gene005012:intron	45.0%
	GTATTCTTGGATGCGGAAAG+AGG	-	chr1.3:56223176-56223195	MS.gene005012:intron	45.0%
	TATCCAAAGGAGAGAGCAGA+TGG	-	chr1.3:56223317-56223336	MS.gene005012:CDS	45.0%
	TGAAGGAGGAGATGATAAGC+AGG	-	chr1.3:56223373-56223392	MS.gene005012:CDS	45.0%
	TGATGTTGCCAGACTCTCTT+TGG	-	chr1.3:56221905-56221924	MS.gene005012:CDS	45.0%
!!	AAGGGTGGTCTTGTTGTTCA+AGG	-	chr1.3:56223434-56223453	MS.gene005012:CDS	45.0%
!!	CGATCTGCAGAAGTATCCAA+AGG	-	chr1.3:56223304-56223323	MS.gene005012:CDS	45.0%
!!	GTGTGTTGGTTTGAAATCCG+GGG	-	chr1.3:56223005-56223024	MS.gene005012:intron	45.0%
	AACGGAATCAGATTCAGCGG+CGG	+	chr1.3:56221949-56221968	None:intergenic	50.0%
	ACCTCCAGCAATGACAATGG+AGG	+	chr1.3:56223138-56223157	None:intergenic	50.0%
	AGGAGGAGATGATAAGCAGG+TGG	-	chr1.3:56223376-56223395	MS.gene005012:CDS	50.0%
	CATTGCTGGAGGTGATACTG+TGG	-	chr1.3:56223145-56223164	MS.gene005012:intron	50.0%
	CCGCTGAATCTGATTCCGTT+TGG	-	chr1.3:56221949-56221968	MS.gene005012:CDS	50.0%
	GAAGCCTCCATTGTCATTGC+TGG	-	chr1.3:56223131-56223150	MS.gene005012:intron	50.0%
	GGAATCCACCTCCAATACCT+CGG	+	chr1.3:56222370-56222389	None:intergenic	50.0%
	GGTGGACATAGGTGTTTGTG+AGG	-	chr1.3:56223394-56223413	MS.gene005012:CDS	50.0%
	GGTGTTTGTGAGGTCAAAGG+TGG	-	chr1.3:56223404-56223423	MS.gene005012:CDS	50.0%
	GTTTGTGAGGTCAAAGGTGG+TGG	-	chr1.3:56223407-56223426	MS.gene005012:CDS	50.0%
	TTGTATGGGGAGATACTCCG+AGG	-	chr1.3:56222350-56222369	MS.gene005012:intron	50.0%
!	GTCAAAGGTGGTGGTTGGAA+GGG	-	chr1.3:56223416-56223435	MS.gene005012:CDS	50.0%
!	TCGTGTGCTTTTGGATCCCA+TGG	-	chr1.3:56223089-56223108	MS.gene005012:intron	50.0%
!!	ACACTTTCTGTCGGTTCGAC+TGG	+	chr1.3:56223281-56223300	None:intergenic	50.0%
!!	ATACTCCGAGGTATTGGAGG+TGG	-	chr1.3:56222362-56222381	MS.gene005012:intron	50.0%
!!	GAGATACTCCGAGGTATTGG+AGG	-	chr1.3:56222359-56222378	MS.gene005012:intron	50.0%
!!	TGATAGTGTTGATCCAGCCC+CGG	+	chr1.3:56223025-56223044	None:intergenic	50.0%
	AGCAGATGGGTGGTTGGAGA+TGG	-	chr1.3:56223331-56223350	MS.gene005012:CDS	55.0%
	CAAAGGAGAGAGCAGATGGG+TGG	-	chr1.3:56223321-56223340	MS.gene005012:CDS	55.0%
	CACCCATCTGCTCTCTCCTT+TGG	+	chr1.3:56223323-56223342	None:intergenic	55.0%
	GAGAGTCTGGCAACATCACG+TGG	+	chr1.3:56221903-56221922	None:intergenic	55.0%
	GCCTCCATTGTCATTGCTGG+AGG	-	chr1.3:56223134-56223153	MS.gene005012:intron	55.0%
	GGGGAGATACTCCGAGGTAT+TGG	-	chr1.3:56222356-56222375	MS.gene005012:intron	55.0%
	GGGTGGTTGGAGATGGAACT+GGG	-	chr1.3:56223338-56223357	MS.gene005012:CDS	55.0%
	GGTTCGACTGGTGCTTCTAC+AGG	+	chr1.3:56223269-56223288	None:intergenic	55.0%
	TGGATGCGGAAAGAGGACGA+AGG	-	chr1.3:56223183-56223202	MS.gene005012:intron	55.0%
	TGGGTGGTTGGAGATGGAAC+TGG	-	chr1.3:56223337-56223356	MS.gene005012:CDS	55.0%
!	AAAGGTGGTGGTTGGAAGGG+TGG	-	chr1.3:56223419-56223438	MS.gene005012:CDS	55.0%
!	GGTCAAAGGTGGTGGTTGGA+AGG	-	chr1.3:56223415-56223434	MS.gene005012:CDS	55.0%
!	GTGAGGTCAAAGGTGGTGGT+TGG	-	chr1.3:56223411-56223430	MS.gene005012:CDS	55.0%
!!	GTTGGTTTGAAATCCGGGGC+TGG	-	chr1.3:56223009-56223028	MS.gene005012:intron	55.0%
	CTTACGAGTTCAGCCGCCTC+AGG	+	chr1.3:56222984-56223003	None:intergenic	60.0%
	GGAGAGAGCAGATGGGTGGT+TGG	-	chr1.3:56223325-56223344	MS.gene005012:CDS	60.0%
	TGCGGGAGCGAGGAACAATC+TGG	+	chr1.3:56223217-56223236	None:intergenic	60.0%
	TTCCTCGCTCCCGCACTACT+GGG	-	chr1.3:56223222-56223241	MS.gene005012:CDS	60.0%
	ATCCCAGTAGTGCGGGAGCG+AGG	+	chr1.3:56223227-56223246	None:intergenic	65.0%
	GTTCCTCGCTCCCGCACTAC+TGG	-	chr1.3:56223221-56223240	MS.gene005012:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	56221816	56223490	56221816	ID=MS.gene005012
chr1.3	mRNA	56221816	56223490	56221816	ID=MS.gene005012.t1;Parent=MS.gene005012
chr1.3	exon	56223194	56223490	56223194	ID=MS.gene005012.t1.exon1;Parent=MS.gene005012.t1
chr1.3	CDS	56223194	56223490	56223194	ID=cds.MS.gene005012.t1;Parent=MS.gene005012.t1
chr1.3	exon	56222902	56223020	56222902	ID=MS.gene005012.t1.exon2;Parent=MS.gene005012.t1
chr1.3	CDS	56222902	56223020	56222902	ID=cds.MS.gene005012.t1;Parent=MS.gene005012.t1
chr1.3	exon	56221816	56222329	56221816	ID=MS.gene005012.t1.exon3;Parent=MS.gene005012.t1
chr1.3	CDS	56221816	56222329	56221816	ID=cds.MS.gene005012.t1;Parent=MS.gene005012.t1

Gene Sequence

>MS.gene005012

ATGGTTGTTGTTATTGAAGAAGAAGGTATTGAATTTCATGATCTACCTGAAGGTTGCATTGAAAACGTTCTTTCTTTCACAACACCACGTGATGTTGCCAGACTCTCTTTGGTTTCATCAACTTTCAAATCCGCCGCTGAATCTGATTCCGTTTGGGATAAATTTTTGCCTTCTGATTATCACTCGATTATCTCTAAATCTGATGCGGAAATTGATAATTCACTTTCTGTCCTTCCTAAGAAGGATCTTTATGTTAATCTCACTCAGAAACCGCTTCTTATAGAGAATGGCAAAAAGGTAATTTCCTACCTCCAATTTGTTTTTGTTTTTTTGTTGTGAGTCTCGGGTTTGAATCCGTTTAGTCTAACAATATCGACATTATTACTGTTAATCACGAAAACATGTTGAAGTGTATGTGTTAATTTATATTTTTCTTGGCTAATCCGTGGTTTTGTTTTATGTGGAATTAGAGCTTTCAATTGGATAAAGTTGATGGGAAGAAATGCTATATGTTATCGGCGAGGAGTTTGTTTATTGTATGGGGAGATACTCCGAGGTATTGGAGGTGGATTCCTGATCCAGATTCAAGGTAAATATTGATTTATTTTTGAAATTGTAGGTATTGGTTAATTTTGGTTGTTAAATTAATGAAATTATGATATGATTTATGAAATTTAAAATATTAGATTATATTAATCGTTTTTCATGTATTAGATCATATTATATTAAATTATGTAGGATCAATTTAGTTTTAAATTTTTTTTCATATACTTCATGCATGTTTGGATTGACTTATTACTCTCTCGACGAGTATTTGTGAGACGGTGTAGGATAGCTTATAATTTTTTTAATGATATATATGCCCATAAGCTGTTTTCAGCATATTTTCATAAGTTCTCCATGTAACTTATGAAAACAGCTTATAGCTTAAGTGAAAATTGTTTGATATTATTTTTTATTTTGTTCACACATAAGCATATATGTTTATCATACTATAAACATTTAATTAAGGTGTTTGATCCATGCTTATTAGTTCTTTATTATAGTCAGGAAATTGTCCTTGAAGACTAATGCGTTTGGTGATTTTATTCTAGAGATTATTTCCTTAGTCATTAAATTGACCAGTGATTGAACAAAATCTAAGCGATTCAAAAAATGCAGGTTTCCTGAGGCGGCTGAACTCGTAAGTGTGTGTTGGTTTGAAATCCGGGGCTGGATCAACACTATCATGTTATCTCCAAAGACTTTGTACGGAGCATACCTTGTATTTAAGTCGTGTGCTTTTGGATCCCATGGATTTGAATATCAGCCATGTGAAGCCTCCATTGTCATTGCTGGAGGTGATACTGTGGAGCGAAATGTATTCTTGGATGCGGAAAGAGGACGAAGGCTAAGATACCAGATTGTTCCTCGCTCCCGCACTACTGGGATATTCACTCGACTTCGATCTCCTGTAGAAGCACCAGTCGAACCGACAGAAAGTGTAGACGATCTGCAGAAGTATCCAAAGGAGAGAGCAGATGGGTGGTTGGAGATGGAACTGGGAGAGTTCTTCAATGAAGGAGGAGATGATAAGCAGGTGGACATAGGTGTTTGTGAGGTCAAAGGTGGTGGTTGGAAGGGTGGTCTTGTTGTTCAAGGAATTGAAATAAGGCCTAAGACTAACTCATGTTGA

Protein sequence

>MS.gene005012.t1

MVVVIEEEGIEFHDLPEGCIENVLSFTTPRDVARLSLVSSTFKSAAESDSVWDKFLPSDYHSIISKSDAEIDNSLSVLPKKDLYVNLTQKPLLIENGKKSFQLDKVDGKKCYMLSARSLFIVWGDTPRYWRWIPDPDSRFPEAAELVSVCWFEIRGWINTIMLSPKTLYGAYLVFKSCAFGSHGFEYQPCEASIVIAGGDTVERNVFLDAERGRRLRYQIVPRSRTTGIFTRLRSPVEAPVEPTESVDDLQKYPKERADGWLEMELGEFFNEGGDDKQVDIGVCEVKGGGWKGGLVVQGIEIRPKTNSC