AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07555

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07555.t1 MTR_1g079140 76.774 310 38 6 1 277 2 310 4.30e-160 447
MS.gene07555.t1 MTR_1g079130 76.166 193 19 2 112 277 1 193 1.08e-96 282
MS.gene07555.t1 MTR_1g079260 46.897 290 105 9 12 273 4 272 1.91e-71 221
MS.gene07555.t1 MTR_1g079370 43.197 294 105 8 11 273 3 265 5.53e-68 212
MS.gene07555.t1 MTR_1g100597 44.138 290 113 8 12 273 4 272 2.28e-63 201
MS.gene07555.t1 MTR_1g079460 42.177 294 111 7 10 273 2 266 2.98e-62 197
MS.gene07555.t1 MTR_1g079410 44.056 286 130 8 5 273 1 273 7.71e-62 196
MS.gene07555.t1 MTR_1g079380 42.466 292 112 8 10 273 2 265 8.43e-62 197
MS.gene07555.t1 MTR_1g079180 42.373 295 108 10 10 273 2 265 4.09e-61 194
MS.gene07555.t1 MTR_1g079200 41.497 294 111 7 10 273 2 264 2.19e-60 192
MS.gene07555.t1 MTR_1g079850 39.865 296 130 7 10 273 2 281 1.08e-55 181
MS.gene07555.t1 MTR_1g079400 41.455 275 135 7 15 273 15 279 1.26e-55 181
MS.gene07555.t1 MTR_1g079230 41.877 277 139 6 12 273 4 273 1.66e-55 180
MS.gene07555.t1 MTR_1g083580 39.560 273 149 6 15 273 11 281 1.04e-51 171
MS.gene07555.t1 MTR_1g026510 38.206 301 126 8 12 273 4 283 5.36e-51 169
MS.gene07555.t1 MTR_1g079250 40.541 296 121 9 12 273 4 278 6.06e-51 169
MS.gene07555.t1 MTR_7g112550 39.519 291 127 11 15 273 10 283 1.17e-50 168
MS.gene07555.t1 MTR_1g100613 39.382 259 108 6 28 256 5 244 1.90e-48 161
MS.gene07555.t1 MTR_3g452600 35.640 289 128 7 12 273 10 267 6.56e-46 155
MS.gene07555.t1 MTR_4g023570 37.079 267 127 6 15 273 4 237 6.41e-44 149
MS.gene07555.t1 MTR_7g112560 35.417 288 123 6 15 273 4 257 5.60e-43 147
MS.gene07555.t1 MTR_3g006850 36.928 306 142 10 12 273 17 315 2.41e-42 147
MS.gene07555.t1 MTR_3g450990 36.395 294 135 9 12 273 10 283 6.68e-42 145
MS.gene07555.t1 MTR_1g079350 37.063 286 142 11 12 273 4 275 2.15e-38 136
MS.gene07555.t1 MTR_2g079100 35.401 274 137 7 14 270 11 261 1.43e-36 131
MS.gene07555.t1 MTR_1g079340 35.915 284 159 8 12 273 43 325 4.03e-33 124
MS.gene07555.t1 MTR_7g096300 33.569 283 114 9 12 259 4 247 6.12e-29 116
MS.gene07555.t1 MTR_1g079350 42.500 160 77 5 12 161 4 158 1.15e-26 103
MS.gene07555.t1 MTR_1g078470 35.233 193 69 6 108 273 21 184 3.16e-22 91.3
MS.gene07555.t1 MTR_7g103380 27.536 276 170 8 14 272 21 283 3.35e-21 91.3
MS.gene07555.t1 MTR_1g079240 36.413 184 93 5 98 273 12 179 3.58e-21 88.6
MS.gene07555.t1 MTR_0002s0020 36.232 138 85 2 14 148 24 161 2.23e-18 83.2
MS.gene07555.t1 MTR_1g101390 36.090 133 81 2 14 145 30 159 9.52e-18 81.6
MS.gene07555.t1 MTR_0113s0040 25.279 269 176 9 14 273 24 276 5.82e-17 79.3
MS.gene07555.t1 MTR_2g042540 43.396 106 53 3 12 114 4 105 2.55e-16 74.3
MS.gene07555.t1 MTR_5g010800 32.374 139 88 3 9 145 14 148 1.55e-15 75.1
MS.gene07555.t1 MTR_1g078460 48.889 90 37 3 12 98 67 150 3.42e-15 71.6
MS.gene07555.t1 MTR_4g102770 35.036 137 84 3 14 148 21 154 7.65e-15 73.2
MS.gene07555.t1 MTR_7g096310 46.575 73 29 3 79 145 43 111 4.90e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07555.t1 AT2G02240 41.636 269 136 6 12 272 61 316 2.13e-57 187
MS.gene07555.t1 AT2G02250 38.966 290 115 9 12 272 47 303 2.60e-56 184
MS.gene07555.t1 AT2G02230 36.774 310 140 11 12 273 32 333 1.24e-54 180
MS.gene07555.t1 AT2G02360 40.357 280 137 8 5 272 7 268 5.33e-54 176
MS.gene07555.t1 AT2G02340 36.149 296 128 7 10 272 34 301 1.29e-51 171
MS.gene07555.t1 AT1G09155 36.986 292 139 7 15 274 3 281 2.72e-50 167
MS.gene07555.t1 AT1G80110 38.652 282 129 8 12 274 1 257 6.76e-49 163
MS.gene07555.t1 AT1G56250 39.236 288 136 7 15 273 4 281 5.77e-48 161
MS.gene07555.t1 AT1G56240 37.631 287 144 6 15 274 4 282 8.13e-47 158
MS.gene07555.t1 AT2G02310 35.915 284 136 8 12 273 45 304 3.29e-45 155
MS.gene07555.t1 AT5G24560 50.355 141 60 2 10 148 1 133 7.85e-41 140
MS.gene07555.t1 AT5G24560 60.784 51 19 1 223 273 143 192 1.39e-13 68.2
MS.gene07555.t1 AT2G02350 34.021 291 126 8 14 272 26 282 1.16e-38 137
MS.gene07555.t1 AT2G02300 35.764 288 133 11 5 273 27 281 4.76e-38 135
MS.gene07555.t1 AT2G02320 34.256 289 146 10 8 275 36 301 3.35e-37 134
MS.gene07555.t1 AT3G53000 26.022 269 182 6 14 272 23 284 6.89e-21 90.5
MS.gene07555.t1 AT3G61060 26.022 269 175 8 14 273 27 280 1.22e-17 81.3
MS.gene07555.t1 AT3G61060 25.926 270 175 8 14 273 27 281 8.64e-17 79.0
MS.gene07555.t1 AT5G52120 30.216 139 93 2 14 148 23 161 5.79e-13 68.2
MS.gene07555.t1 AT1G63090 31.618 136 88 2 14 148 28 159 1.83e-12 66.6
MS.gene07555.t1 AT1G12710 30.147 136 90 2 14 148 30 161 1.50e-11 63.9

Find 74 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAATTGGATAAAGTTAA+TGG 0.227731 1.2:+62225126 MS.gene07555:CDS
TCATTCATTGAACATGATTT+AGG 0.268000 1.2:-62226479 None:intergenic
TTTGATTATTACCTTGAATC+TGG 0.284580 1.2:-62225231 None:intergenic
TTGTTCAAGGAATTGAAATA+AGG 0.306864 1.2:+62226450 MS.gene07555:CDS
TGATGTTGCGAGACTCTCTT+TGG 0.314831 1.2:+62224724 MS.gene07555:CDS
CGAGGAGTTTGTTTATTGTA+TGG 0.324906 1.2:+62225172 MS.gene07555:CDS
GTTCCTCGCTTCCGTACTAC+TGG 0.331275 1.2:+62226236 MS.gene07555:CDS
GTAAGATAGAGATCCTTCTT+AGG 0.342690 1.2:-62224872 None:intergenic
AAGTGTGTTGGTTCGAAATC+CGG 0.357920 1.2:+62226018 MS.gene07555:CDS
TGGGTGGTTGGAGATGGAAT+TGG 0.367950 1.2:+62226340 MS.gene07555:CDS
ATTGAACATGATTTAGGCTT+AGG 0.376062 1.2:-62226473 None:intergenic
ATATCATCTACACTTTCTAT+TGG 0.376774 1.2:-62226290 None:intergenic
TCTCATAGACAATGGCAAAA+AGG 0.380587 1.2:+62224907 MS.gene07555:CDS
GTGGAATTAGAGCTTTCAAT+TGG 0.395595 1.2:+62225113 MS.gene07555:intron
GATGATAAGGAGGTGGAGAT+AGG 0.395868 1.2:+62226386 MS.gene07555:CDS
TTCAATTGGATAAAGTTAAT+GGG 0.396564 1.2:+62225127 MS.gene07555:CDS
GGGTGGTTGGAGATGGAATT+GGG 0.406130 1.2:+62226341 MS.gene07555:CDS
AGCAGATGGGTGGTTGGAGA+TGG 0.421763 1.2:+62226334 MS.gene07555:CDS
AGTGTGTTGGTTCGAAATCC+GGG 0.422470 1.2:+62226019 MS.gene07555:CDS
GGGGAGATACTCCGAGGTAT+TGG 0.424153 1.2:+62225193 MS.gene07555:CDS
CACCCATCTGCTCTCTGCTT+CGG 0.435115 1.2:-62226323 None:intergenic
GGACTTCTGTTCCAGATTCA+AGG 0.437725 1.2:+62225220 MS.gene07555:CDS
TGTGGAGCGAAATGTATTCT+TGG 0.443243 1.2:+62226178 MS.gene07555:CDS
AAGGGTGGTCTTGTTGTTCA+AGG 0.455014 1.2:+62226437 MS.gene07555:CDS
GAATTTATCGCAAACTGAAT+CGG 0.460918 1.2:-62224777 None:intergenic
GAAGCCTCCATTGTCATTGC+TGG 0.466915 1.2:+62226146 MS.gene07555:CDS
TATCCGAAGCAGAGAGCAGA+TGG 0.467845 1.2:+62226320 MS.gene07555:CDS
ATGAGGTCAAAGGTGATGGT+TGG 0.470254 1.2:+62226414 MS.gene07555:CDS
CAATGAAGGAGGAGATGATA+AGG 0.471085 1.2:+62226373 MS.gene07555:CDS
GGTGGAGATAGGTGTTTATG+AGG 0.486130 1.2:+62226397 MS.gene07555:CDS
TTGGGAGAGTTCTTCAATGA+AGG 0.486931 1.2:+62226359 MS.gene07555:CDS
GAGGAGTTTGTTTATTGTAT+GGG 0.492414 1.2:+62225173 MS.gene07555:CDS
GCAGAGAGCAGATGGGTGGT+TGG 0.494102 1.2:+62226328 MS.gene07555:CDS
GTTATCTGTCCTTCCTAAGA+AGG 0.495092 1.2:+62224859 MS.gene07555:CDS
GTTGGTTCGAAATCCGGGGC+TGG 0.497772 1.2:+62226024 MS.gene07555:CDS
CTTTCTATTGGTTCTACTAG+TGG 0.505826 1.2:-62226278 None:intergenic
AGGAGGAGATGATAAGGAGG+TGG 0.515981 1.2:+62226379 MS.gene07555:CDS
ATACTCCGAGGTATTGGAAG+TGG 0.519558 1.2:+62225199 MS.gene07555:CDS
TACGGAAGCGAGGAACAATC+TGG 0.523651 1.2:-62226229 None:intergenic
GGTCAAAGGTGATGGTTGGA+AGG 0.524881 1.2:+62226418 MS.gene07555:CDS
AAAGGTGATGGTTGGAAGGG+TGG 0.535241 1.2:+62226422 MS.gene07555:CDS
GGCTGAACTTGTAAGTGTGT+TGG 0.536282 1.2:+62226006 MS.gene07555:CDS
TTCCTCGCTTCCGTACTACT+GGG 0.539964 1.2:+62226237 MS.gene07555:CDS
GTCAAAGGTGATGGTTGGAA+GGG 0.548325 1.2:+62226419 MS.gene07555:CDS
TTGCCATTGTCTATGAGAAG+CGG 0.551074 1.2:-62224902 None:intergenic
AGGAGTTTGTTTATTGTATG+GGG 0.554522 1.2:+62225174 MS.gene07555:CDS
TGAAGGAGGAGATGATAAGG+AGG 0.559543 1.2:+62226376 MS.gene07555:CDS
GTATTCTTGGATGCGGAAAG+AGG 0.564554 1.2:+62226191 MS.gene07555:CDS
ATAGGTGTTTATGAGGTCAA+AGG 0.573961 1.2:+62226404 MS.gene07555:CDS
GTGGTTGTTATCGAAGAAGA+AGG 0.573991 1.2:+62224638 MS.gene07555:CDS
GATAGAGATCCTTCTTAGGA+AGG 0.586243 1.2:-62224868 None:intergenic
GCGAAATGTATTCTTGGATG+CGG 0.589696 1.2:+62226184 MS.gene07555:CDS
GGAGAGTTCTTCAATGAAGG+AGG 0.592604 1.2:+62226362 MS.gene07555:CDS
GAGTGAATATCCCAGTAGTA+CGG 0.602751 1.2:-62226247 None:intergenic
GCCTCCATTGTCATTGCTGG+AGG 0.607301 1.2:+62226149 MS.gene07555:CDS
ATAATTGAGTGATAATCAGA+TGG 0.607906 1.2:-62224803 None:intergenic
TGATAGTGTTGATCCAGCCC+CGG 0.609203 1.2:-62226037 None:intergenic
GTTTATGAGGTCAAAGGTGA+TGG 0.610839 1.2:+62226410 MS.gene07555:CDS
GAATTTCATGATCTACCTGA+AGG 0.613938 1.2:+62224665 MS.gene07555:CDS
ATCGCCTCCAGCAATGACAA+TGG 0.624003 1.2:-62226153 None:intergenic
ATGACAATGGAGGCTTCACA+TGG 0.637596 1.2:-62226140 None:intergenic
ATCCGAAGCAGAGAGCAGAT+GGG 0.644218 1.2:+62226321 MS.gene07555:CDS
GAGAGTCTCGCAACATCACG+TGG 0.648346 1.2:-62224719 None:intergenic
ATCCCAGTAGTACGGAAGCG+AGG 0.653042 1.2:-62226239 None:intergenic
GAAGTCCACTTCCAATACCT+CGG 0.654374 1.2:-62225204 None:intergenic
GTGTGTTGGTTCGAAATCCG+GGG 0.658187 1.2:+62226020 MS.gene07555:CDS
AAACCGCTTCTCATAGACAA+TGG 0.658966 1.2:+62224899 MS.gene07555:CDS
CGAAGCAGAGAGCAGATGGG+TGG 0.662839 1.2:+62226324 MS.gene07555:CDS
GCCTCCAGCAATGACAATGG+AGG 0.662846 1.2:-62226150 None:intergenic
GCAAACTGAATCGGATTCAG+CGG 0.672156 1.2:-62224768 None:intergenic
CATTGCTGGAGGCGATACTG+TGG 0.685935 1.2:+62226160 MS.gene07555:CDS
TTGTATGGGGAGATACTCCG+AGG 0.719053 1.2:+62225187 MS.gene07555:CDS
AATGCTATATGTTATCAGCG+AGG 0.746950 1.2:+62225154 MS.gene07555:CDS
TGGATGCGGAAAGAGGACGA+AGG 0.783182 1.2:+62226198 MS.gene07555:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTATAAACGTTTAATTA+AGG + chr1.2:62225719-62225738 MS.gene07555:intron 15.0%
!! ATAGTTTCAATAACTAAATT+TGG + chr1.2:62225896-62225915 MS.gene07555:intron 15.0%
!! TCAATCATATTAAATTATGT+AGG + chr1.2:62225421-62225440 MS.gene07555:intron 15.0%
!! TTAAAATAAGAGTTAATCAT+TGG + chr1.2:62225285-62225304 MS.gene07555:intron 15.0%
!! CAATTACCATTGAAATATAT+AGG - chr1.2:62225944-62225963 None:intergenic 20.0%
!! TATGATTGAATACATGAAAA+AGG - chr1.2:62225410-62225429 None:intergenic 20.0%
!! TTAATAGCAAAGATATGTTT+AGG + chr1.2:62225039-62225058 MS.gene07555:intron 20.0%
!! TTCAATTGGATAAAGTTAAT+GGG + chr1.2:62225127-62225146 MS.gene07555:CDS 20.0%
!! TTGTTACCTATATATTTCAA+TGG + chr1.2:62225935-62225954 MS.gene07555:intron 20.0%
!! TTTCAATTGGATAAAGTTAA+TGG + chr1.2:62225126-62225145 MS.gene07555:CDS 20.0%
!!! AAACATATCTTTGCTATTAA+CGG - chr1.2:62225039-62225058 None:intergenic 20.0%
!!! AATTTACTATCTTTTTGTCT+CGG + chr1.2:62224931-62224950 MS.gene07555:intron 20.0%
! ATAATTGAGTGATAATCAGA+TGG - chr1.2:62224806-62224825 None:intergenic 25.0%
! ATATCATCTACACTTTCTAT+TGG - chr1.2:62226293-62226312 None:intergenic 25.0%
! GTACTAATAAGTAATAAGCA+TGG - chr1.2:62225773-62225792 None:intergenic 25.0%
! TAATAAGCATGGATCAATTT+AGG - chr1.2:62225762-62225781 None:intergenic 25.0%
! TCATTCATTGAACATGATTT+AGG - chr1.2:62226482-62226501 None:intergenic 25.0%
! TTGTTCAAGGAATTGAAATA+AGG + chr1.2:62226450-62226469 MS.gene07555:CDS 25.0%
! TTTGATTATTACCTTGAATC+TGG - chr1.2:62225234-62225253 None:intergenic 25.0%
!! ATACTTCAGAGTATTTATGT+TGG - chr1.2:62225522-62225541 None:intergenic 25.0%
!! ATTTACTATCTTTTTGTCTC+GGG + chr1.2:62224932-62224951 MS.gene07555:intron 25.0%
!! CTAATCGATTCAAAAAATTC+AGG + chr1.2:62225972-62225991 MS.gene07555:intron 25.0%
!! TTAAGGTGTTTATCTAAACA+CGG + chr1.2:62225736-62225755 MS.gene07555:intron 25.0%
!!! ATCAATCAAATTAGTCTTGA+AGG - chr1.2:62225828-62225847 None:intergenic 25.0%
AGTTATTGAAACTATAGCAC+TGG - chr1.2:62225891-62225910 None:intergenic 30.0%
ATTCTTGAAGTTGTAGGTAT+TGG + chr1.2:62225311-62225330 MS.gene07555:intron 30.0%
ATTGAACATGATTTAGGCTT+AGG - chr1.2:62226476-62226495 None:intergenic 30.0%
GAATTTATCGCAAACTGAAT+CGG - chr1.2:62224780-62224799 None:intergenic 30.0%
TGGTTTATTCTTGAAGTTGT+AGG + chr1.2:62225305-62225324 MS.gene07555:intron 30.0%
TTATCTCCAAAGACTTTGTA+CGG + chr1.2:62226062-62226081 MS.gene07555:intron 30.0%
! AGGAGTTTGTTTATTGTATG+GGG + chr1.2:62225174-62225193 MS.gene07555:CDS 30.0%
! GAATTTTCTTAGCTAAATCG+TGG + chr1.2:62225077-62225096 MS.gene07555:intron 30.0%
! GAGGAGTTTGTTTATTGTAT+GGG + chr1.2:62225173-62225192 MS.gene07555:CDS 30.0%
!! CAAAAAATTCAGGTTTTCTG+AGG + chr1.2:62225982-62226001 MS.gene07555:intron 30.0%
!! GCTGTTTTCATAAGTTATCA+TGG - chr1.2:62225630-62225649 None:intergenic 30.0%
AAGCACACGACTTAAATACA+AGG - chr1.2:62226094-62226113 None:intergenic 35.0%
AAGTATTTGTGAGATGGTGT+AGG + chr1.2:62225536-62225555 MS.gene07555:intron 35.0%
AATAAGCCGAAAACAGCTTA+TGG - chr1.2:62225595-62225614 None:intergenic 35.0%
AATGCTATATGTTATCAGCG+AGG + chr1.2:62225154-62225173 MS.gene07555:CDS 35.0%
ACTGGTCAATTTAGTGACTA+AGG - chr1.2:62225873-62225892 None:intergenic 35.0%
ATAAGCCGAAAACAGCTTAT+GGG - chr1.2:62225594-62225613 None:intergenic 35.0%
ATAGGTGTTTATGAGGTCAA+AGG + chr1.2:62226404-62226423 MS.gene07555:CDS 35.0%
GAATTTCATGATCTACCTGA+AGG + chr1.2:62224665-62224684 MS.gene07555:CDS 35.0%
GTAAGATAGAGATCCTTCTT+AGG - chr1.2:62224875-62224894 None:intergenic 35.0%
GTGGAATTAGAGCTTTCAAT+TGG + chr1.2:62225113-62225132 MS.gene07555:intron 35.0%
TCGTGGTTTATTGTGTTATG+TGG + chr1.2:62225094-62225113 MS.gene07555:intron 35.0%
TCTCATAGACAATGGCAAAA+AGG + chr1.2:62224907-62224926 MS.gene07555:CDS 35.0%
TCTTATACTTCACGCATGTT+TGG + chr1.2:62225473-62225492 MS.gene07555:intron 35.0%
TGGCTGATATTCAAATCCAT+AGG - chr1.2:62226123-62226142 None:intergenic 35.0%
! CGAGGAGTTTGTTTATTGTA+TGG + chr1.2:62225172-62225191 MS.gene07555:CDS 35.0%
!! AAAATTCAGGTTTTCTGAGG+TGG + chr1.2:62225985-62226004 MS.gene07555:intron 35.0%
!! ACTCTGAAGTATTTGTGAGA+TGG + chr1.2:62225530-62225549 MS.gene07555:intron 35.0%
!! ATATGCCCATAAGCTGTTTT+CGG + chr1.2:62225586-62225605 MS.gene07555:intron 35.0%
!! CTTTCTATTGGTTCTACTAG+TGG - chr1.2:62226281-62226300 None:intergenic 35.0%
AAACCGCTTCTCATAGACAA+TGG + chr1.2:62224899-62224918 MS.gene07555:CDS 40.0%
CAATGAAGGAGGAGATGATA+AGG + chr1.2:62226373-62226392 MS.gene07555:CDS 40.0%
GAGTGAATATCCCAGTAGTA+CGG - chr1.2:62226250-62226269 None:intergenic 40.0%
GATAGAGATCCTTCTTAGGA+AGG - chr1.2:62224871-62224890 None:intergenic 40.0%
GCGAAATGTATTCTTGGATG+CGG + chr1.2:62226184-62226203 MS.gene07555:CDS 40.0%
GTATTTAAGTCGTGTGCTTC+TGG + chr1.2:62226095-62226114 MS.gene07555:intron 40.0%
GTGGTTGTTATCGAAGAAGA+AGG + chr1.2:62224638-62224657 MS.gene07555:CDS 40.0%
GTTATCTGTCCTTCCTAAGA+AGG + chr1.2:62224859-62224878 MS.gene07555:CDS 40.0%
GTTTATGAGGTCAAAGGTGA+TGG + chr1.2:62226410-62226429 MS.gene07555:CDS 40.0%
TATGCTCCGTACAAAGTCTT+TGG - chr1.2:62226071-62226090 None:intergenic 40.0%
TGTGGAGCGAAATGTATTCT+TGG + chr1.2:62226178-62226197 MS.gene07555:CDS 40.0%
TTAGACCAGACACTTTCACT+AGG - chr1.2:62224964-62224983 None:intergenic 40.0%
TTGCCATTGTCTATGAGAAG+CGG - chr1.2:62224905-62224924 None:intergenic 40.0%
TTGGGAGAGTTCTTCAATGA+AGG + chr1.2:62226359-62226378 MS.gene07555:CDS 40.0%
! ACGTTTTCAATGCAACCTTC+AGG - chr1.2:62224683-62224702 None:intergenic 40.0%
!! AAGTGTGTTGGTTCGAAATC+CGG + chr1.2:62226018-62226037 MS.gene07555:CDS 40.0%
!! TCAAACCTAGTGAAAGTGTC+TGG + chr1.2:62224956-62224975 MS.gene07555:intron 40.0%
ATGACAATGGAGGCTTCACA+TGG - chr1.2:62226143-62226162 None:intergenic 45.0%
GAAGTCCACTTCCAATACCT+CGG - chr1.2:62225207-62225226 None:intergenic 45.0%
GATGATAAGGAGGTGGAGAT+AGG + chr1.2:62226386-62226405 MS.gene07555:CDS 45.0%
GCAAACTGAATCGGATTCAG+CGG - chr1.2:62224771-62224790 None:intergenic 45.0%
GGACTTCTGTTCCAGATTCA+AGG + chr1.2:62225220-62225239 MS.gene07555:CDS 45.0%
GGAGAGTTCTTCAATGAAGG+AGG + chr1.2:62226362-62226381 MS.gene07555:CDS 45.0%
GGCTGAACTTGTAAGTGTGT+TGG + chr1.2:62226006-62226025 MS.gene07555:CDS 45.0%
GGTGGAGATAGGTGTTTATG+AGG + chr1.2:62226397-62226416 MS.gene07555:CDS 45.0%
GTATTCTTGGATGCGGAAAG+AGG + chr1.2:62226191-62226210 MS.gene07555:CDS 45.0%
TGAAGGAGGAGATGATAAGG+AGG + chr1.2:62226376-62226395 MS.gene07555:CDS 45.0%
TGATGTTGCGAGACTCTCTT+TGG + chr1.2:62224724-62224743 MS.gene07555:CDS 45.0%
! ATGAGGTCAAAGGTGATGGT+TGG + chr1.2:62226414-62226433 MS.gene07555:CDS 45.0%
! GTCAAAGGTGATGGTTGGAA+GGG + chr1.2:62226419-62226438 MS.gene07555:CDS 45.0%
!! AAGGGTGGTCTTGTTGTTCA+AGG + chr1.2:62226437-62226456 MS.gene07555:CDS 45.0%
!! AGTGTGTTGGTTCGAAATCC+GGG + chr1.2:62226019-62226038 MS.gene07555:CDS 45.0%
!! ATACTCCGAGGTATTGGAAG+TGG + chr1.2:62225199-62225218 MS.gene07555:CDS 45.0%
AGGAGGAGATGATAAGGAGG+TGG + chr1.2:62226379-62226398 MS.gene07555:CDS 50.0%
ATCCGAAGCAGAGAGCAGAT+GGG + chr1.2:62226321-62226340 MS.gene07555:CDS 50.0%
ATCGCCTCCAGCAATGACAA+TGG - chr1.2:62226156-62226175 None:intergenic 50.0%
GAAGCCTCCATTGTCATTGC+TGG + chr1.2:62226146-62226165 MS.gene07555:CDS 50.0%
GGGTGGTTGGAGATGGAATT+GGG + chr1.2:62226341-62226360 MS.gene07555:CDS 50.0%
TACGGAAGCGAGGAACAATC+TGG - chr1.2:62226232-62226251 None:intergenic 50.0%
TATCCGAAGCAGAGAGCAGA+TGG + chr1.2:62226320-62226339 MS.gene07555:CDS 50.0%
TGGGTGGTTGGAGATGGAAT+TGG + chr1.2:62226340-62226359 MS.gene07555:CDS 50.0%
TTCCTCGCTTCCGTACTACT+GGG + chr1.2:62226237-62226256 MS.gene07555:CDS 50.0%
TTGTATGGGGAGATACTCCG+AGG + chr1.2:62225187-62225206 MS.gene07555:CDS 50.0%
! AAAGGTGATGGTTGGAAGGG+TGG + chr1.2:62226422-62226441 MS.gene07555:CDS 50.0%
! GGTCAAAGGTGATGGTTGGA+AGG + chr1.2:62226418-62226437 MS.gene07555:CDS 50.0%
!! GTGTGTTGGTTCGAAATCCG+GGG + chr1.2:62226020-62226039 MS.gene07555:CDS 50.0%
!! TCGTGTGCTTCTGGAACCTA+TGG + chr1.2:62226104-62226123 MS.gene07555:intron 50.0%
!! TGATAGTGTTGATCCAGCCC+CGG - chr1.2:62226040-62226059 None:intergenic 50.0%
AGCAGATGGGTGGTTGGAGA+TGG + chr1.2:62226334-62226353 MS.gene07555:CDS 55.0%
ATCCCAGTAGTACGGAAGCG+AGG - chr1.2:62226242-62226261 None:intergenic 55.0%
CACCCATCTGCTCTCTGCTT+CGG - chr1.2:62226326-62226345 None:intergenic 55.0%
CATTGCTGGAGGCGATACTG+TGG + chr1.2:62226160-62226179 MS.gene07555:CDS 55.0%
GAGAGTCTCGCAACATCACG+TGG - chr1.2:62224722-62224741 None:intergenic 55.0%
GCCTCCAGCAATGACAATGG+AGG - chr1.2:62226153-62226172 None:intergenic 55.0%
GCCTCCATTGTCATTGCTGG+AGG + chr1.2:62226149-62226168 MS.gene07555:CDS 55.0%
GGGGAGATACTCCGAGGTAT+TGG + chr1.2:62225193-62225212 MS.gene07555:CDS 55.0%
GTTCCTCGCTTCCGTACTAC+TGG + chr1.2:62226236-62226255 MS.gene07555:CDS 55.0%
TGGATGCGGAAAGAGGACGA+AGG + chr1.2:62226198-62226217 MS.gene07555:CDS 55.0%
CGAAGCAGAGAGCAGATGGG+TGG + chr1.2:62226324-62226343 MS.gene07555:CDS 60.0%
GCAGAGAGCAGATGGGTGGT+TGG + chr1.2:62226328-62226347 MS.gene07555:CDS 60.0%
!! GTTGGTTCGAAATCCGGGGC+TGG + chr1.2:62226024-62226043 MS.gene07555:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 62224635 62226505 62224635 ID=MS.gene07555
chr1.2 mRNA 62224635 62226505 62224635 ID=MS.gene07555.t1;Parent=MS.gene07555
chr1.2 exon 62224635 62224928 62224635 ID=MS.gene07555.t1.exon1;Parent=MS.gene07555.t1
chr1.2 CDS 62224635 62224928 62224635 ID=cds.MS.gene07555.t1;Parent=MS.gene07555.t1
chr1.2 exon 62225123 62225241 62225123 ID=MS.gene07555.t1.exon2;Parent=MS.gene07555.t1
chr1.2 CDS 62225123 62225241 62225123 ID=cds.MS.gene07555.t1;Parent=MS.gene07555.t1
chr1.2 exon 62225994 62226060 62225994 ID=MS.gene07555.t1.exon3;Parent=MS.gene07555.t1
chr1.2 CDS 62225994 62226060 62225994 ID=cds.MS.gene07555.t1;Parent=MS.gene07555.t1
chr1.2 exon 62226140 62226505 62226140 ID=MS.gene07555.t1.exon4;Parent=MS.gene07555.t1
chr1.2 CDS 62226140 62226505 62226140 ID=cds.MS.gene07555.t1;Parent=MS.gene07555.t1
Gene Sequence

>MS.gene07555

ATGGTGGTTGTTATCGAAGAAGAAGGTGTTGAATTTCATGATCTACCTGAAGGTTGCATTGAAAACGTTCTTTCTTTCACAACACCACGTGATGTTGCGAGACTCTCTTTGGTTTCATCAACTTTCAGATCTGCCGCTGAATCCGATTCAGTTTGCGATAAATTCTTGCCATCTGATTATCACTCAATTATCTCTCAATCTGATGCAGAAATCGATAATAACTCGTTATCTGTCCTTCCTAAGAAGGATCTCTATCTTACTCAGAAACCGCTTCTCATAGACAATGGCAAAAAGGTAATTTACTATCTTTTTGTCTCGGGTTCAAACCTAGTGAAAGTGTCTGGTCTAACAATATCATCGTTGTCAGTTGAGTTAGTCTATACAATGTGTCGTTTTTATTACCGTTAATAGCAAAGATATGTTTAGGTGTGTATGTTAATGTGAATTTTCTTAGCTAAATCGTGGTTTATTGTGTTATGTGGAATTAGAGCTTTCAATTGGATAAAGTTAATGGGAAGAAATGCTATATGTTATCAGCGAGGAGTTTGTTTATTGTATGGGGAGATACTCCGAGGTATTGGAAGTGGACTTCTGTTCCAGATTCAAGGTAATAATCAAAGTTTAATTACTAAGAGTTAATCATTGATTTTTTAAAATAAGAGTTAATCATTGGTTTATTCTTGAAGTTGTAGGTATTGGTTAGCTTCAGTTGTGAAATTAACGAAATTATGAAATGATTTATGAAATTTAAAATATTAGATCTCATATTAATCCTTTTTCATGTATTCAATCATATTAAATTATGTAGGTATTGATCAATTTAGTTTTGAAAACTTTTTCTTATACTTCACGCATGTTTGGATTGACTTATTTGAGCTTGTCTACCAACATAAATACTCTGAAGTATTTGTGAGATGGTGTAGGATAGCTTATAATTTTTTTTTATGATATATATGCCCATAAGCTGTTTTCGGCTTATTTTCATAAGTTCTCCATGATAACTTATGAAAACAGCTTATAGCTTAAATGAAAATTGTTTGATTCTATTTTATATTTGCTTTATATATAAGCATGTATGTTTATCATACTATAAACGTTTAATTAAGGTGTTTATCTAAACACGGCCTAAATTGATCCATGCTTATTACTTATTAGTACATTAAGATCAATCAATTTAGTTAGAAAATTGTCCTTCAAGACTAATTTGATTGATGATTTTATTCTAGAGATTACTTCCTTAGTCACTAAATTGACCAGTGCTATAGTTTCAATAACTAAATTTGGTGATTTATTCTTTAATTTGTTACCTATATATTTCAATGGTAATTGAACAAAATCTAATCGATTCAAAAAATTCAGGTTTTCTGAGGTGGCTGAACTTGTAAGTGTGTTGGTTCGAAATCCGGGGCTGGATCAACACTATCATGTTATCTCCAAAGACTTTGTACGGAGCATACCTTGTATTTAAGTCGTGTGCTTCTGGAACCTATGGATTTGAATATCAGCCATGTGAAGCCTCCATTGTCATTGCTGGAGGCGATACTGTGGAGCGAAATGTATTCTTGGATGCGGAAAGAGGACGAAGGCTAAGATACCAGATTGTTCCTCGCTTCCGTACTACTGGGATATTCACTCGACTTCGACCACTAGTAGAACCAATAGAAAGTGTAGATGATATGCAGAAGTATCCGAAGCAGAGAGCAGATGGGTGGTTGGAGATGGAATTGGGAGAGTTCTTCAATGAAGGAGGAGATGATAAGGAGGTGGAGATAGGTGTTTATGAGGTCAAAGGTGATGGTTGGAAGGGTGGTCTTGTTGTTCAAGGAATTGAAATAAGGCCTAAGCCTAAATCATGTTCAATGAATGACTAA
Protein sequence

>MS.gene07555.t1

MVVVIEEEGVEFHDLPEGCIENVLSFTTPRDVARLSLVSSTFRSAAESDSVCDKFLPSDYHSIISQSDAEIDNNSLSVLPKKDLYLTQKPLLIDNGKKSFQLDKVNGKKCYMLSARSLFIVWGDTPRYWKWTSVPDSRFSEVAELVSVLVRNPGLDQHYHPCEASIVIAGGDTVERNVFLDAERGRRLRYQIVPRFRTTGIFTRLRPLVEPIESVDDMQKYPKQRADGWLEMELGEFFNEGGDDKEVEIGVYEVKGDGWKGGLVVQGIEIRPKPKSCSMND