AlfalfaGEDB | MS.gene41433

M. sativa cultivar XinJiangDaYe / MS.gene41433

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF14299.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41433.t1	XP_013469665.1	94.6	276	8	2	1	270	1	275	1.60E-145	525.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41433.t1	Q9ZVQ6	44.0	266	135	4	4	266	14	268	5.6e-59	229.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41433.t1	G8A220	94.6	276	8	2	1	270	1	275	1.1e-145	525.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene41433	MS.gene005028	PPI
MS.gene41433	MS.gene88931	PPI
MS.gene07583	MS.gene41433	PPI
MS.gene41433	MS.gene52530	PPI
MS.gene41433	MS.gene96708	PPI
MS.gene41433	MS.gene43943	PPI
MS.gene52532	MS.gene41433	PPI
MS.gene41433	MS.gene51496	PPI
MS.gene41433	MS.gene51487	PPI
MS.gene41433	MS.gene49090	PPI
MS.gene41433	MS.gene058740	PPI
MS.gene41433	MS.gene006296	PPI
MS.gene41433	MS.gene005020	PPI
MS.gene74872	MS.gene41433	PPI
MS.gene41431	MS.gene41433	PPI
MS.gene74860	MS.gene41433	PPI
MS.gene005035	MS.gene41433	PPI
MS.gene74859	MS.gene41433	PPI
MS.gene41433	MS.gene49085	PPI
MS.gene74863	MS.gene41433	PPI
MS.gene41433	MS.gene74881	PPI
MS.gene41433	MS.gene069492	PPI
MS.gene005019	MS.gene41433	PPI
MS.gene41433	MS.gene49086	PPI
MS.gene41433	MS.gene34488	PPI
MS.gene49086	MS.gene41433	PPI
MS.gene41433	MS.gene04280	PPI
MS.gene41433	MS.gene74913	PPI
MS.gene41433	MS.gene000006	PPI
MS.gene41433	MS.gene07250	PPI
MS.gene74867	MS.gene41433	PPI
MS.gene41433	MS.gene27114	PPI
MS.gene07569	MS.gene41433	PPI
MS.gene41433	MS.gene74864	PPI
MS.gene41433	MS.gene07580	PPI
MS.gene059798	MS.gene41433	PPI
MS.gene41433	MS.gene07572	PPI
MS.gene005030	MS.gene41433	PPI
MS.gene41433	MS.gene63582	PPI
MS.gene41433	MS.gene74868	PPI
MS.gene005023	MS.gene41433	PPI
MS.gene51502	MS.gene41433	PPI
MS.gene07555	MS.gene41433	PPI
MS.gene41433	MS.gene07577	PPI
MS.gene41433	MS.gene068736	PPI
MS.gene41433	MS.gene005013	PPI
MS.gene41433	MS.gene74858	PPI
MS.gene41433	MS.gene43942	PPI
MS.gene67769	MS.gene41433	PPI
MS.gene41433	MS.gene006298	PPI
MS.gene41433	MS.gene52533	PPI
MS.gene67762	MS.gene41433	PPI
MS.gene41433	MS.gene94933	PPI
MS.gene41433	MS.gene74875	PPI
MS.gene34490	MS.gene41433	PPI
MS.gene88931	MS.gene41433	PPI
MS.gene41433	MS.gene07557	PPI
MS.gene41433	MS.gene005552	PPI
MS.gene41433	MS.gene74912	PPI
MS.gene74878	MS.gene41433	PPI
MS.gene41433	MS.gene009359	PPI
MS.gene41433	MS.gene41430	PPI
MS.gene41433	MS.gene005034	PPI
MS.gene51487	MS.gene41433	PPI
MS.gene74911	MS.gene41433	PPI
MS.gene74873	MS.gene41433	PPI
MS.gene41433	MS.gene005032	PPI
MS.gene49088	MS.gene41433	PPI
MS.gene41433	MS.gene005033	PPI
MS.gene07578	MS.gene41433	PPI
MS.gene74881	MS.gene41433	PPI
MS.gene41433	MS.gene07581	PPI
MS.gene41433	MS.gene006294	PPI
MS.gene74998	MS.gene41433	PPI
MS.gene41433	MS.gene005027	PPI
MS.gene41433	MS.gene74880	PPI
MS.gene058615	MS.gene41433	PPI
MS.gene07559	MS.gene41433	PPI
MS.gene41433	MS.gene07585	PPI
MS.gene41433	MS.gene07586	PPI
MS.gene49186	MS.gene41433	PPI
MS.gene41433	MS.gene07571	PPI
MS.gene41433	MS.gene005068	PPI
MS.gene41433	MS.gene49185	PPI
MS.gene74876	MS.gene41433	PPI
MS.gene005012	MS.gene41433	PPI
MS.gene41433	MS.gene74877	PPI
MS.gene41433	MS.gene005066	PPI
MS.gene41433	MS.gene07556	PPI
MS.gene41433	MS.gene95381	PPI
MS.gene41433	MS.gene24084	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41433.t1	MTR_1g100597	94.565	276	8	2	1	270	1	275	0.0	531
MS.gene41433.t1	MTR_1g079370	75.000	268	63	2	1	267	1	265	1.31e-144	406
MS.gene41433.t1	MTR_1g079180	76.296	270	56	4	1	267	1	265	5.27e-144	404
MS.gene41433.t1	MTR_1g079230	71.014	276	74	2	1	270	1	276	4.83e-141	397
MS.gene41433.t1	MTR_1g079260	70.545	275	76	2	1	270	1	275	4.60e-140	395
MS.gene41433.t1	MTR_1g079460	71.429	273	71	3	1	270	1	269	2.37e-136	385
MS.gene41433.t1	MTR_1g079200	73.260	273	58	5	1	267	1	264	6.98e-135	381
MS.gene41433.t1	MTR_1g100613	78.750	240	42	1	20	250	5	244	4.73e-134	379
MS.gene41433.t1	MTR_1g079380	72.426	272	67	2	1	269	1	267	1.20e-129	369
MS.gene41433.t1	MTR_1g079850	67.606	284	78	4	1	270	1	284	1.78e-127	363
MS.gene41433.t1	MTR_3g006850	63.934	305	71	6	3	270	16	318	1.46e-121	350
MS.gene41433.t1	MTR_1g079250	67.260	281	81	6	1	270	1	281	7.18e-115	332
MS.gene41433.t1	MTR_3g452600	63.670	267	91	2	4	270	10	270	1.59e-113	327
MS.gene41433.t1	MTR_1g026510	62.238	286	92	7	1	270	1	286	1.13e-112	327
MS.gene41433.t1	MTR_2g079100	60.606	264	92	3	3	264	8	261	4.61e-101	296
MS.gene41433.t1	MTR_3g450990	56.842	285	97	4	4	270	10	286	1.65e-100	295
MS.gene41433.t1	MTR_1g079410	57.249	269	105	4	5	267	9	273	7.09e-100	293
MS.gene41433.t1	MTR_1g079350	56.738	282	100	7	1	267	1	275	5.59e-95	281
MS.gene41433.t1	MTR_1g079340	54.983	291	102	8	1	267	40	325	8.43e-88	264
MS.gene41433.t1	MTR_7g096300	60.474	253	83	5	1	247	1	242	7.56e-86	271
MS.gene41433.t1	MTR_1g079140	47.315	298	125	6	4	270	13	309	5.65e-83	251
MS.gene41433.t1	MTR_1g079400	45.645	287	112	4	5	267	13	279	3.70e-80	243
MS.gene41433.t1	MTR_1g078470	62.500	184	62	3	84	267	8	184	1.96e-74	225
MS.gene41433.t1	MTR_7g112550	46.809	282	131	9	2	267	5	283	6.34e-73	225
MS.gene41433.t1	MTR_1g083580	41.219	279	148	6	2	267	6	281	1.94e-65	206
MS.gene41433.t1	MTR_1g079240	57.692	182	62	4	87	267	12	179	4.35e-61	191
MS.gene41433.t1	MTR_7g112560	38.060	268	153	5	4	268	1	258	4.50e-59	189
MS.gene41433.t1	MTR_1g076870	70.149	134	26	3	128	247	2	135	4.15e-58	182
MS.gene41433.t1	MTR_4g023570	38.577	267	131	7	4	267	1	237	5.39e-54	175
MS.gene41433.t1	MTR_1g079350	61.314	137	40	3	1	128	1	133	4.47e-45	151
MS.gene41433.t1	MTR_1g079210	63.415	123	35	2	129	241	7	129	1.35e-44	147
MS.gene41433.t1	MTR_1g079130	44.444	189	83	3	101	267	1	189	3.58e-43	145
MS.gene41433.t1	MTR_2g042540	66.667	105	33	2	1	103	1	105	5.74e-38	130
MS.gene41433.t1	MTR_3g058640	59.615	104	38	1	128	231	7	106	3.04e-36	125
MS.gene41433.t1	MTR_1g078460	71.264	87	25	0	1	87	64	150	5.71e-36	126
MS.gene41433.t1	MTR_7g096310	56.818	132	49	3	57	186	38	163	3.06e-35	124
MS.gene41433.t1	MTR_7g103380	26.812	276	174	6	6	266	21	283	2.75e-30	115
MS.gene41433.t1	MTR_0113s0040	26.429	280	169	5	2	267	20	276	5.64e-26	103
MS.gene41433.t1	MTR_1g101390	26.882	279	167	5	2	266	26	281	6.82e-24	98.2
MS.gene41433.t1	MTR_1g079220	63.380	71	20	2	165	234	1	66	7.50e-21	84.3
MS.gene41433.t1	MTR_4g083970	27.358	212	126	6	63	268	102	291	3.58e-19	85.5
MS.gene41433.t1	MTR_0002s0020	24.014	279	168	6	6	264	24	278	5.65e-19	84.7
MS.gene41433.t1	MTR_4g102770	33.333	144	92	2	6	146	21	163	2.38e-18	82.8
MS.gene41433.t1	MTR_5g010800	25.090	279	164	10	6	266	19	270	1.38e-16	78.2
MS.gene41433.t1	MTR_1g079390	72.000	50	12	2	213	262	8	55	2.16e-15	69.3
MS.gene41433.t1	MTR_1g079190	66.667	45	15	0	215	259	130	174	2.26e-12	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41433.t1	AT2G02360	43.985	266	135	4	4	266	14	268	1.94e-75	231
MS.gene41433.t1	AT1G80110	43.494	269	128	5	6	266	3	255	1.99e-67	210
MS.gene41433.t1	AT2G02240	43.561	264	140	4	4	266	61	316	3.11e-67	211
MS.gene41433.t1	AT2G02250	42.222	270	136	6	4	266	47	303	2.23e-65	206
MS.gene41433.t1	AT2G02340	42.751	269	145	5	4	266	36	301	1.98e-64	204
MS.gene41433.t1	AT2G02230	37.338	308	149	6	4	270	32	336	3.79e-63	201
MS.gene41433.t1	AT1G09155	43.011	279	140	8	7	267	3	280	4.69e-63	200
MS.gene41433.t1	AT1G56250	41.429	280	145	6	7	268	4	282	3.12e-62	197
MS.gene41433.t1	AT1G56240	40.288	278	147	6	7	266	4	280	5.81e-60	192
MS.gene41433.t1	AT2G02350	39.033	269	152	6	2	266	22	282	5.35e-59	189
MS.gene41433.t1	AT2G02320	39.925	268	143	8	6	266	42	298	1.44e-52	173
MS.gene41433.t1	AT2G02310	35.955	267	161	4	4	267	45	304	3.05e-52	172
MS.gene41433.t1	AT2G02300	36.029	272	142	8	4	267	34	281	2.25e-43	149
MS.gene41433.t1	AT5G24560	42.708	192	97	4	4	192	3	184	6.53e-43	145
MS.gene41433.t1	AT3G53000	28.114	281	175	6	3	269	20	287	2.94e-31	118
MS.gene41433.t1	AT2G02350	35.294	170	101	5	101	266	1	165	1.63e-28	107
MS.gene41433.t1	AT1G12710	27.240	279	164	7	3	266	27	281	4.68e-22	93.2
MS.gene41433.t1	AT5G52120	26.871	294	156	11	1	266	18	280	8.65e-21	89.7
MS.gene41433.t1	AT1G63090	29.646	226	138	7	3	212	25	245	4.20e-20	87.8
MS.gene41433.t1	AT3G61060	22.222	279	175	6	6	267	27	280	8.37e-20	87.0
MS.gene41433.t1	AT3G61060	21.505	279	178	5	6	267	27	281	6.88e-19	84.7
MS.gene41433.t1	AT1G12710	23.676	321	164	8	3	266	27	323	1.92e-14	72.4
MS.gene41433.t1	AT4G19840	29.651	172	98	5	99	267	94	245	2.59e-14	71.2
MS.gene41433.t1	AT1G33920	26.966	178	102	4	96	267	9	164	5.64e-14	68.6

Find 74 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTAGATCTCTCCACATTTCT+TGG	0.204004	1.4:-78346145	MS.gene41433:CDS
TAAGCTGCATACTGAGTATT+TGG	0.255011	1.4:+78345335	None:intergenic
AATGACAGGGTTTGAAGATT+TGG	0.270841	1.4:-78347296	MS.gene41433:CDS
CTCGTGTTCAAATTGATTGA+TGG	0.294639	1.4:-78345311	MS.gene41433:CDS
AATCTTGCATGTTCTACATT+TGG	0.309985	1.4:+78345206	None:intergenic
CATCATCGACGATGCCAAAA+AGG	0.324659	1.4:-78347056	MS.gene41433:intron
TAGATCTCTCCACATTTCTT+GGG	0.327058	1.4:-78346144	MS.gene41433:CDS
AGCAAATGCTCCTTCCAAAA+AGG	0.353184	1.4:-78347110	MS.gene41433:CDS
TAGCACTAAAATTGTCTGTT+TGG	0.362941	1.4:-78345231	MS.gene41433:CDS
GATGAGTGTTATGGAGATAA+AGG	0.373408	1.4:-78345066	MS.gene41433:CDS
AGACGAAGATTAGCAACTTC+AGG	0.376030	1.4:+78345407	None:intergenic
GGACTGCTATGCCTGATTCC+AGG	0.379956	1.4:-78346097	MS.gene41433:intron
AAGGGGAATTTCTTTCTTGA+AGG	0.399686	1.4:-78345032	MS.gene41433:CDS
TGAAATGCAGAGCTTTCAAT+TGG	0.399907	1.4:-78346204	MS.gene41433:intron
CCGCCGATTCCGATGCCGTC+TGG	0.403257	1.4:-78347186	MS.gene41433:CDS
TTCTTGAAGGAATAGAAGTT+AGG	0.408541	1.4:-78345019	MS.gene41433:CDS
GAGAGTCTGCCGGCGTCAAC+AGG	0.416723	1.4:+78347235	None:intergenic
AAAATGGCCAACCTGGAATC+AGG	0.422964	1.4:+78346086	None:intergenic
AGAAGTTCAGATGAGTGTTA+TGG	0.423422	1.4:-78345075	MS.gene41433:CDS
TGATGATAGGTCGATCAGAT+AGG	0.426684	1.4:+78347074	None:intergenic
ATGATGACCGCTATTGGATC+TGG	0.429837	1.4:-78346118	MS.gene41433:CDS
GTTGGTTAATTGTCTACCTT+AGG	0.437901	1.4:+78344996	None:intergenic
AGGAGTTGTACGAGACAGTA+TGG	0.445061	1.4:+78347255	None:intergenic
TTCAAATTGATTGATGGCTA+TGG	0.448670	1.4:-78345305	MS.gene41433:CDS
ATTCCAGACGGCATCGGAAT+CGG	0.451722	1.4:+78347183	None:intergenic
GGTCGTGCTGACAGAGTAGT+AGG	0.464775	1.4:-78345179	MS.gene41433:CDS
TTGGCATCGTCGATGATGAT+AGG	0.465612	1.4:+78347061	None:intergenic
TTCAAGAAAGAAATTCCCCT+TGG	0.477363	1.4:+78345034	None:intergenic
TGAGATGATAGAGTTGATAT+CGG	0.478686	1.4:+78347147	None:intergenic
GGGGTGATGATGACCGCTAT+TGG	0.481778	1.4:-78346124	MS.gene41433:CDS
CGTCCTAGTGTGAGAAGTGA+TGG	0.490000	1.4:-78345149	MS.gene41433:CDS
CTTCCTGTGGATTTATCTGT+CGG	0.490828	1.4:-78345272	MS.gene41433:CDS
GACGAAGATTAGCAACTTCA+GGG	0.508122	1.4:+78345408	None:intergenic
GGGTTTGAAGATTTGGCAGA+AGG	0.511439	1.4:-78347289	MS.gene41433:CDS
GGCGGCAGAAAGGAAAGTCT+TGG	0.517109	1.4:+78347204	None:intergenic
TCAAATTGATTGATGGCTAT+GGG	0.524048	1.4:-78345304	MS.gene41433:CDS
GGGTGGATGGAGATTGAGAT+GGG	0.529204	1.4:-78345128	MS.gene41433:CDS
ATGATAGAGTTGATATCGGA+AGG	0.534915	1.4:+78347151	None:intergenic
AGGAATAGAAGTTAGGCCTA+AGG	0.540733	1.4:-78345012	MS.gene41433:CDS
CATCGGAATCGGCGGCAGAA+AGG	0.542303	1.4:+78347194	None:intergenic
GTGTGGTGGCTCGAAATTCG+TGG	0.547967	1.4:-78345383	MS.gene41433:CDS
TGGGTTTGAGACCCTTCCTG+TGG	0.549562	1.4:-78345285	MS.gene41433:CDS
GATGATAGGTCGATCAGATA+GGG	0.551413	1.4:+78347075	None:intergenic
AGTGTTATGGAGATAAAGGC+TGG	0.553186	1.4:-78345062	MS.gene41433:CDS
TGTGAGAAGTGATGGGTGGA+TGG	0.556810	1.4:-78345141	MS.gene41433:CDS
AGATCTCTCCACATTTCTTG+GGG	0.557619	1.4:-78346143	MS.gene41433:CDS
GATTTATCTGTCGGTGTCGA+AGG	0.557631	1.4:-78345263	MS.gene41433:CDS
CTAATCTTCGTCTTGTGTGG+TGG	0.562220	1.4:-78345397	MS.gene41433:CDS
TGGGTGGATGGAGATTGAGA+TGG	0.563597	1.4:-78345129	MS.gene41433:CDS
TTGCTAATCTTCGTCTTGTG+TGG	0.565369	1.4:-78345400	MS.gene41433:CDS
TTTCAATTGGATAGAAAGAG+TGG	0.567809	1.4:-78346191	MS.gene41433:CDS
GGAAACGACGGAGAGTCTGC+CGG	0.570360	1.4:+78347225	None:intergenic
CACCCATCACTTCTCACACT+AGG	0.570746	1.4:+78345146	None:intergenic
GAAGGAGCATTTGCTAGAGA+AGG	0.571483	1.4:+78347118	None:intergenic
CATCATCACCCCAAGAAATG+TGG	0.582603	1.4:+78346135	None:intergenic
GATAAAGGCTGGTGAGACCA+AGG	0.592773	1.4:-78345051	MS.gene41433:CDS
TTATCTGTCGGTGTCGAAGG+TGG	0.597798	1.4:-78345260	MS.gene41433:CDS
ATAAAGGCTGGTGAGACCAA+GGG	0.609601	1.4:-78345050	MS.gene41433:CDS
CGACAGATAAATCCACAGGA+AGG	0.609772	1.4:+78345273	None:intergenic
TGTGGTGGCTCGAAATTCGT+GGG	0.618223	1.4:-78345382	MS.gene41433:CDS
CCAGACGGCATCGGAATCGG+CGG	0.622067	1.4:+78347186	None:intergenic
ACACCGACAGATAAATCCAC+AGG	0.642651	1.4:+78345269	None:intergenic
ATACTGAGTATTTGGAGACA+AGG	0.643026	1.4:+78345343	None:intergenic
GACAGATAAATCCACAGGAA+GGG	0.644862	1.4:+78345274	None:intergenic
AAAGTGATTCCAGACGGCAT+CGG	0.647589	1.4:+78347177	None:intergenic
TAAAGGCTGGTGAGACCAAG+GGG	0.647680	1.4:-78345049	MS.gene41433:CDS
GTCCTAGTGTGAGAAGTGAT+GGG	0.659394	1.4:-78345148	MS.gene41433:CDS
AAGGAAAGTCTTGGAAACGA+CGG	0.661166	1.4:+78347213	None:intergenic
AGGAAGAAAGTGATTCCAGA+CGG	0.665074	1.4:+78347171	None:intergenic
CTAGTGTGAGAAGTGATGGG+TGG	0.706163	1.4:-78345145	MS.gene41433:CDS
TCACTTCTCACACTAGGACG+CGG	0.714640	1.4:+78345152	None:intergenic
CGTACAACTCCTGTTGACGC+CGG	0.724690	1.4:-78347244	MS.gene41433:CDS
TAGCAGTCCAGATCCAATAG+CGG	0.737188	1.4:+78346111	None:intergenic
AGTTGTACGAGACAGTATGG+CGG	0.781475	1.4:+78347258	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTTATTTGATTAATTTGT+AGG	+	chr1.4:78345746-78345765	None:intergenic	10.0%
!!!	ATTTATTTGATTAATTTGTA+GGG	+	chr1.4:78345745-78345764	None:intergenic	10.0%
!!	ATTGATTGTTGTAAAATATA+TGG	-	chr1.4:78346016-78346035	MS.gene41433:intron	15.0%
!!	TGAAATAATTTAGTTATCAT+TGG	-	chr1.4:78346624-78346643	MS.gene41433:intron	15.0%
!!	TTATGCATTGTAAAATATAT+TGG	-	chr1.4:78345938-78345957	MS.gene41433:intron	15.0%
!!!	TTTATTTGATTAATTTGTAG+GGG	+	chr1.4:78345744-78345763	None:intergenic	15.0%
!!	AAACTCAGATATGAAATATA+AGG	+	chr1.4:78346327-78346346	None:intergenic	20.0%
!!	AACAATGTTAAAACAAACAA+GGG	+	chr1.4:78346269-78346288	None:intergenic	20.0%
!!	AGATATGAAATATAAGGAAA+TGG	+	chr1.4:78346321-78346340	None:intergenic	20.0%
!!	ATTAAATGTAATCAAAAGTG+TGG	+	chr1.4:78345615-78345634	None:intergenic	20.0%
!!	TAAAAAAAGTTATTAGACAG+TGG	+	chr1.4:78346548-78346567	None:intergenic	20.0%
!!	TTACAACAGATAAATACTAA+GGG	+	chr1.4:78346430-78346449	None:intergenic	20.0%
!!	TTACTTATATATACATTTGC+AGG	+	chr1.4:78345807-78345826	None:intergenic	20.0%
!!	TTAGTATTTATCTGTTGTAA+CGG	-	chr1.4:78346430-78346449	MS.gene41433:intron	20.0%
!	AAAAACCAATAAAAATGAGG+GGG	+	chr1.4:78346237-78346256	None:intergenic	25.0%
!	ATTGATTGTTCTTTCATGTT+AGG	-	chr1.4:78345330-78345349	MS.gene41433:CDS	25.0%
!	GAAAAACCAATAAAAATGAG+GGG	+	chr1.4:78346238-78346257	None:intergenic	25.0%
!	GAACAATGTTAAAACAAACA+AGG	+	chr1.4:78346270-78346289	None:intergenic	25.0%
!	GAATTGAGAAAAAGTTGAAA+AGG	+	chr1.4:78346829-78346848	None:intergenic	25.0%
!	GCACAAACAAATAAACAAAA+TGG	+	chr1.4:78345771-78345790	None:intergenic	25.0%
!	GGAAAAACCAATAAAAATGA+GGG	+	chr1.4:78346239-78346258	None:intergenic	25.0%
!	GTTACAACAGATAAATACTA+AGG	+	chr1.4:78346431-78346450	None:intergenic	25.0%
!	TGGAAAAACCAATAAAAATG+AGG	+	chr1.4:78346240-78346259	None:intergenic	25.0%
!	TTGATTGTTCTTTCATGTTA+GGG	-	chr1.4:78345331-78345350	MS.gene41433:CDS	25.0%
!!	AATATGTGATGATACCTTTT+TGG	+	chr1.4:78345257-78345276	None:intergenic	25.0%
!!	GTTATTACTCTTTTTGATGT+TGG	-	chr1.4:78346718-78346737	MS.gene41433:intron	25.0%
	AATCTTGCATGTTCTACATT+TGG	+	chr1.4:78347093-78347112	None:intergenic	30.0%
	ATAAAAATGAGGGGGAAAAA+TGG	+	chr1.4:78346229-78346248	None:intergenic	30.0%
	CAATAGTCCTTAATTCATAC+TGG	-	chr1.4:78345878-78345897	MS.gene41433:intron	30.0%
	CAATCATCTTTCATAAGTGT+AGG	+	chr1.4:78345563-78345582	None:intergenic	30.0%
	GTCTAACAAGAAGTTAACTT+CGG	+	chr1.4:78346465-78346484	None:intergenic	30.0%
	TAGCACTAAAATTGTCTGTT+TGG	-	chr1.4:78347065-78347084	MS.gene41433:CDS	30.0%
	TCTAACAAGAAGTTAACTTC+GGG	+	chr1.4:78346464-78346483	None:intergenic	30.0%
	TGCATTTCAATATACCCAAA+AGG	+	chr1.4:78346081-78346100	None:intergenic	30.0%
	TTAGATGCCAGTATGAATTA+AGG	+	chr1.4:78345888-78345907	None:intergenic	30.0%
	TTCTTGAAGGAATAGAAGTT+AGG	-	chr1.4:78347277-78347296	MS.gene41433:CDS	30.0%
	TTTCAATTGGATAGAAAGAG+TGG	-	chr1.4:78346105-78346124	MS.gene41433:CDS	30.0%
!	AAAAGGCATAACATCACAAA+TGG	+	chr1.4:78346812-78346831	None:intergenic	30.0%
!	AATGCTAATCATAAGCCTTT+TGG	-	chr1.4:78346063-78346082	MS.gene41433:intron	30.0%
!	ATGCTAATCATAAGCCTTTT+GGG	-	chr1.4:78346064-78346083	MS.gene41433:intron	30.0%
!	GTAGAACATGCAAGATTTTA+CGG	-	chr1.4:78347096-78347115	MS.gene41433:CDS	30.0%
!	TCAAATTGATTGATGGCTAT+GGG	-	chr1.4:78346992-78347011	MS.gene41433:intron	30.0%
!	TCATCATCGTCTGAAATATT+AGG	-	chr1.4:78345277-78345296	MS.gene41433:CDS	30.0%
!	TCTGAACTTCTTCATTTTCA+AGG	+	chr1.4:78347212-78347231	None:intergenic	30.0%
!	TTCAAATTGATTGATGGCTA+TGG	-	chr1.4:78346991-78347010	MS.gene41433:intron	30.0%
!!	AGACAATTTTAGTGCTACTA+TGG	+	chr1.4:78347062-78347081	None:intergenic	30.0%
!!	TGAGATGATAGAGTTGATAT+CGG	+	chr1.4:78345152-78345171	None:intergenic	30.0%
!!	TTTTTCCCCCTCATTTTTAT+TGG	-	chr1.4:78346229-78346248	MS.gene41433:intron	30.0%
!!!	GAGCTGTTTCAAAGTTTTTT+TGG	-	chr1.4:78346680-78346699	MS.gene41433:intron	30.0%
	AAAACAAACAAGGGAGAAGT+TGG	+	chr1.4:78346260-78346279	None:intergenic	35.0%
	AACCTCAATAACAGTGATGT+TGG	-	chr1.4:78346521-78346540	MS.gene41433:intron	35.0%
	AAGATGATTGAAAACGTGTC+TGG	-	chr1.4:78345573-78345592	MS.gene41433:intron	35.0%
	AAGGGGAATTTCTTTCTTGA+AGG	-	chr1.4:78347264-78347283	MS.gene41433:CDS	35.0%
	AGAAGTTCAGATGAGTGTTA+TGG	-	chr1.4:78347221-78347240	MS.gene41433:CDS	35.0%
	AGATGAAAGTTTCCTTGATG+AGG	+	chr1.4:78346373-78346392	None:intergenic	35.0%
	ATACTGAGTATTTGGAGACA+AGG	+	chr1.4:78346956-78346975	None:intergenic	35.0%
	ATGAAAGTTTCCTTGATGAG+GGG	+	chr1.4:78346371-78346390	None:intergenic	35.0%
	CATTGTTCTTTCTCCTTTCT+CGG	-	chr1.4:78346282-78346301	MS.gene41433:intron	35.0%
	CTCGTGTTCAAATTGATTGA+TGG	-	chr1.4:78346985-78347004	MS.gene41433:intron	35.0%
	CTTTACAAACCAAACCAACA+TGG	+	chr1.4:78345512-78345531	None:intergenic	35.0%
	GATGAAAGTTTCCTTGATGA+GGG	+	chr1.4:78346372-78346391	None:intergenic	35.0%
	GATGAGTGTTATGGAGATAA+AGG	-	chr1.4:78347230-78347249	MS.gene41433:CDS	35.0%
	TAAGCTGCATACTGAGTATT+TGG	+	chr1.4:78346964-78346983	None:intergenic	35.0%
	TAGATCTCTCCACATTTCTT+GGG	-	chr1.4:78346152-78346171	MS.gene41433:CDS	35.0%
	TGAAATGCAGAGCTTTCAAT+TGG	-	chr1.4:78346092-78346111	MS.gene41433:intron	35.0%
	TGTTATTGAGGTTCAGATTC+AGG	+	chr1.4:78346514-78346533	None:intergenic	35.0%
	TTCAAGAAAGAAATTCCCCT+TGG	+	chr1.4:78347265-78347284	None:intergenic	35.0%
	TTCAGGTGTATGGTTAACTT+CGG	+	chr1.4:78346497-78346516	None:intergenic	35.0%
!!	ATGATAGAGTTGATATCGGA+AGG	+	chr1.4:78345148-78345167	None:intergenic	35.0%
	AAACCAACATGGTGGTTCAA+CGG	+	chr1.4:78345501-78345520	None:intergenic	40.0%
	AAGGAAAGTCTTGGAAACGA+CGG	+	chr1.4:78345086-78345105	None:intergenic	40.0%
	AATGAACAATTCGCCGAGAA+AGG	+	chr1.4:78346298-78346317	None:intergenic	40.0%
	AGACGAAGATTAGCAACTTC+AGG	+	chr1.4:78346892-78346911	None:intergenic	40.0%
	AGATCTCTCCACATTTCTTG+GGG	-	chr1.4:78346153-78346172	MS.gene41433:CDS	40.0%
	AGCAAATGCTCCTTCCAAAA+AGG	-	chr1.4:78345186-78345205	MS.gene41433:CDS	40.0%
	AGGAAGAAAGTGATTCCAGA+CGG	+	chr1.4:78345128-78345147	None:intergenic	40.0%
	AGGAATAGAAGTTAGGCCTA+AGG	-	chr1.4:78347284-78347303	MS.gene41433:CDS	40.0%
	AGGGGAATAGGATCAATCAA+CGG	+	chr1.4:78346353-78346372	None:intergenic	40.0%
	AGTGTTATGGAGATAAAGGC+TGG	-	chr1.4:78347234-78347253	MS.gene41433:CDS	40.0%
	CTAGATCTCTCCACATTTCT+TGG	-	chr1.4:78346151-78346170	MS.gene41433:CDS	40.0%
	CTTCCTGTGGATTTATCTGT+CGG	-	chr1.4:78347024-78347043	MS.gene41433:intron	40.0%
	CTTTCATAAGTGTAGGTGCT+AGG	+	chr1.4:78345556-78345575	None:intergenic	40.0%
	GACAGATAAATCCACAGGAA+GGG	+	chr1.4:78347025-78347044	None:intergenic	40.0%
	GACCAACATCACTGTTATTG+AGG	+	chr1.4:78346526-78346545	None:intergenic	40.0%
	GACGAAGATTAGCAACTTCA+GGG	+	chr1.4:78346891-78346910	None:intergenic	40.0%
	GATGATAGGTCGATCAGATA+GGG	+	chr1.4:78345224-78345243	None:intergenic	40.0%
	GGATAGTTACAGATTGACAG+CGG	+	chr1.4:78345663-78345682	None:intergenic	40.0%
	TACAAACCAAACCAACATGG+TGG	+	chr1.4:78345509-78345528	None:intergenic	40.0%
	TCAGGTGTATGGTTAACTTC+GGG	+	chr1.4:78346496-78346515	None:intergenic	40.0%
	TGATGATAGGTCGATCAGAT+AGG	+	chr1.4:78345225-78345244	None:intergenic	40.0%
	TTGCTAATCTTCGTCTTGTG+TGG	-	chr1.4:78346896-78346915	MS.gene41433:intron	40.0%
!	AAAAGTGTGGTGACAACAGT+CGG	+	chr1.4:78345602-78345621	None:intergenic	40.0%
!	AGATAGAGAGCCTTTTTGGA+AGG	+	chr1.4:78345199-78345218	None:intergenic	40.0%
!	CATCTCTGCAACTTTTGTGT+TGG	-	chr1.4:78346858-78346877	MS.gene41433:intron	40.0%
	AAAATGGCCAACCTGGAATC+AGG	+	chr1.4:78346213-78346232	None:intergenic	45.0%
	AAAGTGATTCCAGACGGCAT+CGG	+	chr1.4:78345122-78345141	None:intergenic	45.0%
	ACACCGACAGATAAATCCAC+AGG	+	chr1.4:78347030-78347049	None:intergenic	45.0%
	AGGAGTTGTACGAGACAGTA+TGG	+	chr1.4:78345044-78345063	None:intergenic	45.0%
	AGTTGTACGAGACAGTATGG+CGG	+	chr1.4:78345041-78345060	None:intergenic	45.0%
	ATAAAGGCTGGTGAGACCAA+GGG	-	chr1.4:78347246-78347265	MS.gene41433:CDS	45.0%
	ATGATGACCGCTATTGGATC+TGG	-	chr1.4:78346178-78346197	MS.gene41433:CDS	45.0%
	ATGGTGGTTCAACGGAACAT+CGG	+	chr1.4:78345493-78345512	None:intergenic	45.0%
	ATGTTTGTGTGCGTCTGTGT+CGG	-	chr1.4:78345683-78345702	MS.gene41433:intron	45.0%
	CATCATCACCCCAAGAAATG+TGG	+	chr1.4:78346164-78346183	None:intergenic	45.0%
	CATCATCGACGATGCCAAAA+AGG	-	chr1.4:78345240-78345259	MS.gene41433:CDS	45.0%
	CGACAGATAAATCCACAGGA+AGG	+	chr1.4:78347026-78347045	None:intergenic	45.0%
	CTAATCTTCGTCTTGTGTGG+TGG	-	chr1.4:78346899-78346918	MS.gene41433:intron	45.0%
	GAGGTTCAGATTCAGGTGTA+TGG	+	chr1.4:78346507-78346526	None:intergenic	45.0%
	GCAAGATGAACGACAATGAG+AGG	-	chr1.4:78346395-78346414	MS.gene41433:intron	45.0%
	GGGTTTGAAGATTTGGCAGA+AGG	-	chr1.4:78345007-78345026	MS.gene41433:CDS	45.0%
	GTCCTAGTGTGAGAAGTGAT+GGG	-	chr1.4:78347148-78347167	MS.gene41433:CDS	45.0%
	GTTTCCTTGATGAGGGGAAT+AGG	+	chr1.4:78346365-78346384	None:intergenic	45.0%
	TAGCAGTCCAGATCCAATAG+CGG	+	chr1.4:78346188-78346207	None:intergenic	45.0%
	TGATCCTATTCCCCTCATCA+AGG	-	chr1.4:78346358-78346377	MS.gene41433:intron	45.0%
	TTGGCATCGTCGATGATGAT+AGG	+	chr1.4:78345238-78345257	None:intergenic	45.0%
!	CTGCAACTTTTGTGTTGGAC+AGG	-	chr1.4:78346863-78346882	MS.gene41433:intron	45.0%
!	GGCAAGATAGAGAGCCTTTT+TGG	+	chr1.4:78345203-78345222	None:intergenic	45.0%
!	GTTGAACCACCATGTTGGTT+TGG	-	chr1.4:78345500-78345519	MS.gene41433:intron	45.0%
!!	GAAGGAGCATTTGCTAGAGA+AGG	+	chr1.4:78345181-78345200	None:intergenic	45.0%
!!	GATTTATCTGTCGGTGTCGA+AGG	-	chr1.4:78347033-78347052	MS.gene41433:intron	45.0%
!!	TACATTTATTATTATTATTA+CGG	-	chr1.4:78345454-78345473	MS.gene41433:intron	5.0%
!!	TATTAGATATATTATTAAAT+GGG	-	chr1.4:78345716-78345735	MS.gene41433:intron	5.0%
!!	TTATTAGATATATTATTAAA+TGG	-	chr1.4:78345715-78345734	MS.gene41433:intron	5.0%
	CACCCATCACTTCTCACACT+AGG	+	chr1.4:78347153-78347172	None:intergenic	50.0%
	CGTCCTAGTGTGAGAAGTGA+TGG	-	chr1.4:78347147-78347166	MS.gene41433:CDS	50.0%
	GACACAGACGCACACAAACA+TGG	+	chr1.4:78345684-78345703	None:intergenic	50.0%
	GATAAAGGCTGGTGAGACCA+AGG	-	chr1.4:78347245-78347264	MS.gene41433:CDS	50.0%
	GGGTGGATGGAGATTGAGAT+GGG	-	chr1.4:78347168-78347187	MS.gene41433:CDS	50.0%
	GTTCCGTTGAACCACCATGT+TGG	-	chr1.4:78345495-78345514	MS.gene41433:intron	50.0%
	TAAAGGCTGGTGAGACCAAG+GGG	-	chr1.4:78347247-78347266	MS.gene41433:CDS	50.0%
	TCACTTCTCACACTAGGACG+CGG	+	chr1.4:78347147-78347166	None:intergenic	50.0%
	TGCTATGCCTGATTCCAGGT+TGG	-	chr1.4:78346203-78346222	MS.gene41433:intron	50.0%
	TGGGTGGATGGAGATTGAGA+TGG	-	chr1.4:78347167-78347186	MS.gene41433:CDS	50.0%
	TGTGGTGGCTCGAAATTCGT+GGG	-	chr1.4:78346914-78346933	MS.gene41433:intron	50.0%
!	ATTCCAGACGGCATCGGAAT+CGG	+	chr1.4:78345116-78345135	None:intergenic	50.0%
!	CTAGTGTGAGAAGTGATGGG+TGG	-	chr1.4:78347151-78347170	MS.gene41433:CDS	50.0%
!!	TGTGAGAAGTGATGGGTGGA+TGG	-	chr1.4:78347155-78347174	MS.gene41433:CDS	50.0%
!!	TTATCTGTCGGTGTCGAAGG+TGG	-	chr1.4:78347036-78347055	MS.gene41433:intron	50.0%
	AGGGGGAAAAATGGCCAACC+TGG	+	chr1.4:78346220-78346239	None:intergenic	55.0%
	CGTACAACTCCTGTTGACGC+CGG	-	chr1.4:78345052-78345071	MS.gene41433:CDS	55.0%
	GGACTGCTATGCCTGATTCC+AGG	-	chr1.4:78346199-78346218	MS.gene41433:intron	55.0%
	GGCGGCAGAAAGGAAAGTCT+TGG	+	chr1.4:78345095-78345114	None:intergenic	55.0%
	GTGTGGTGGCTCGAAATTCG+TGG	-	chr1.4:78346913-78346932	MS.gene41433:intron	55.0%
!	GGGGTGATGATGACCGCTAT+TGG	-	chr1.4:78346172-78346191	MS.gene41433:CDS	55.0%
!	GGTCGTGCTGACAGAGTAGT+AGG	-	chr1.4:78347117-78347136	MS.gene41433:CDS	55.0%
!	TGGGTTTGAGACCCTTCCTG+TGG	-	chr1.4:78347011-78347030	MS.gene41433:intron	55.0%
	CATCGGAATCGGCGGCAGAA+AGG	+	chr1.4:78345105-78345124	None:intergenic	60.0%
	GGAAACGACGGAGAGTCTGC+CGG	+	chr1.4:78345074-78345093	None:intergenic	60.0%
	GAGAGTCTGCCGGCGTCAAC+AGG	+	chr1.4:78345064-78345083	None:intergenic	65.0%
!	CCAGACGGCATCGGAATCGG+CGG	+	chr1.4:78345113-78345132	None:intergenic	65.0%
!!	CCGCCGATTCCGATGCCGTC+TGG	-	chr1.4:78345110-78345129	MS.gene41433:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	78345001	78347317	78345001	ID=MS.gene41433
chr1.4	mRNA	78345001	78347317	78345001	ID=MS.gene41433.t1;Parent=MS.gene41433
chr1.4	exon	78347057	78347317	78347057	ID=MS.gene41433.t1.exon1;Parent=MS.gene41433.t1
chr1.4	CDS	78347057	78347317	78347057	ID=cds.MS.gene41433.t1;Parent=MS.gene41433.t1
chr1.4	exon	78346098	78346216	78346098	ID=MS.gene41433.t1.exon2;Parent=MS.gene41433.t1
chr1.4	CDS	78346098	78346216	78346098	ID=cds.MS.gene41433.t1;Parent=MS.gene41433.t1
chr1.4	exon	78345001	78345433	78345001	ID=MS.gene41433.t1.exon3;Parent=MS.gene41433.t1
chr1.4	CDS	78345001	78345433	78345001	ID=cds.MS.gene41433.t1;Parent=MS.gene41433.t1

Gene Sequence

>MS.gene41433

ATGACAGGGTTTGAAGATTTGGCAGAAGGATGCATTTCCGCCATACTGTCTCGTACAACTCCTGTTGACGCCGGCAGACTCTCCGTCGTTTCCAAGACTTTCCTTTCTGCCGCCGATTCCGATGCCGTCTGGAATCACTTTCTTCCTTCCGATATCAACTCTATCATCTCACAGTCACCTTCTCTAGCAAATGCTCCTTCCAAAAAGGCTCTCTATCTTGCCCTATCTGATCGACCTATCATCATCGACGATGCCAAAAAGGTATCATCACATATTTCATCATCGTCTGAAATATTAGGCTTTATTATCGTTGATCATACGTAAACTTAATTGATTGTTCTTTCATGTTAGGGCTTAAGATATTGACTGAACATTGATCATCAGAATTCACTTCTGCATGTATCTATAAATTACTTGATCGCTTTGCAAATAACTTGTTTTATAATAATCTTGTACATTTATTATTATTATTACGGTAGTGCAGTAGATCCGATGTTCCGTTGAACCACCATGTTGGTTTGGTTTGTAAAGATATTCGATAGATTAGATCTACCTAGCACCTACACTTATGAAAGATGATTGAAAACGTGTCTGGTGTCCGACTGTTGTCACCACACTTTTGATTACATTTAATTTTTTTTTTTTTTTTTTAATTATGACCGCTGTCAATCTGTAACTATCCATGTTTGTGTGCGTCTGTGTCGGTGATTCATATTATTAGATATATTATTAAATGGGTACCCCTACAAATTAATCAAATAAATTAACCATTTTGTTTATTTGTTTGTGCTTTTAAACTGTGTCCTGCAAATGTATATATAAGTAAAATAAGTATAATTAAGATAAGACTCAATATTAGTTGAGCATTGTAAAAAAACAATAGTCCTTAATTCATACTGGCATCTAATATCTTTGAGATCTAAAGATTCTCAACAGTTTATGCATTGTAAAATATATTGGCTGAAGAAAGTCTGCTACTATGCATGTATTTTCTACAGTTACATACGAATGCTCAATTGATTGTTGTAAAATATATGGTGATTTTTTAAACGCTTAGTTCAGAATGCTAATCATAAGCCTTTTGGGTATATTGAAATGCAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAAGTGTTACATGCTTGCTGCTAGATCTCTCCACATTTCTTGGGGTGATGATGACCGCTATTGGATCTGGACTGCTATGCCTGATTCCAGGTTGGCCATTTTTCCCCCTCATTTTTATTGGTTTTTCCAACTTCTCCCTTGTTTGTTTTAACATTGTTCTTTCTCCTTTCTCGGCGAATTGTTCATTCCATTTCCTTATATTTCATATCTGAGTTTATACCGTTGATTGATCCTATTCCCCTCATCAAGGAAACTTTCATCTATGCAAGATGAACGACAATGAGAGGTTGAATATACCCTTAGTATTTATCTGTTGTAACGGTAATCAATCCCGAAGTTAACTTCTTGTTAGACTATTCAATCCCGAAGTTAACCATACACCTGAATCTGAACCTCAATAACAGTGATGTTGGTCCACTGTCTAATAACTTTTTTTATAGATAACAAACAATACAACTTAGTAACTGAGAAGTTTATCATAATCGATTACACTTGAAATAATTTAGTTATCATTGGTACAATATATGATAACTGATGTTTTTATTAGTTGAGCTGTTTCAAAGTTTTTTTGGTGAAAATATTTTGCTGTTATTACTCTTTTTGATGTTGGAAACTTTTGATTCAACTAGCAAATTTTAGTTGATGAGCTTGCAGTGTACGTACACATGTATAAATGTTCCATTTGTGATGTTATGCCTTTTCAACTTTTTCTCAATTCTTGTATTCTCATCTCTGCAACTTTTGTGTTGGACAGGTTCCCTGAAGTTGCTAATCTTCGTCTTGTGTGGTGGCTCGAAATTCGTGGGATGATTAACAATCTTGCCTTGTCTCCAAATACTCAGTATGCAGCTTATCTCGTGTTCAAATTGATTGATGGCTATGGGTTTGAGACCCTTCCTGTGGATTTATCTGTCGGTGTCGAAGGTGGCCATAGTAGCACTAAAATTGTCTGTTTGGATCCAAATGTAGAACATGCAAGATTTTACGGTCGTGCTGACAGAGTAGTAGGATTGCCGCGTCCTAGTGTGAGAAGTGATGGGTGGATGGAGATTGAGATGGGAGAGTTCTTCAACTCAAGCCTTGAAAATGAAGAAGTTCAGATGAGTGTTATGGAGATAAAGGCTGGTGAGACCAAGGGGAATTTCTTTCTTGAAGGAATAGAAGTTAGGCCTAAGGTAGACAATTAA

Protein sequence

>MS.gene41433.t1

MTGFEDLAEGCISAILSRTTPVDAGRLSVVSKTFLSAADSDAVWNHFLPSDINSIISQSPSLANAPSKKALYLALSDRPIIIDDAKKSFQLDRKSGKKCYMLAARSLHISWGDDDRYWIWTAMPDSRFPEVANLRLVWWLEIRGMINNLALSPNTQYAAYLVFKLIDGYGFETLPVDLSVGVEGGHSSTKIVCLDPNVEHARFYGRADRVVGLPRPSVRSDGWMEIEMGEFFNSSLENEEVQMSVMEIKAGETKGNFFLEGIEVRPKVDN