AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059798

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059798.t1 MTR_2g079100 76.491 285 39 4 2 284 3 261 7.22e-153 428
MS.gene059798.t1 MTR_3g452600 69.718 284 64 4 2 285 4 265 8.70e-130 369
MS.gene059798.t1 MTR_3g450990 61.258 302 75 6 2 285 4 281 1.57e-111 324
MS.gene059798.t1 MTR_1g079370 56.446 287 99 5 5 287 1 265 1.24e-100 295
MS.gene059798.t1 MTR_1g079460 58.929 280 96 4 9 287 5 266 5.14e-99 291
MS.gene059798.t1 MTR_3g006850 53.605 319 98 6 2 285 10 313 1.63e-97 289
MS.gene059798.t1 MTR_1g079180 56.940 281 103 4 5 285 1 263 3.50e-97 286
MS.gene059798.t1 MTR_1g100597 56.463 294 91 9 5 285 1 270 8.23e-96 283
MS.gene059798.t1 MTR_1g079200 54.325 289 101 7 5 287 1 264 6.56e-93 276
MS.gene059798.t1 MTR_1g079380 57.193 285 96 5 5 285 1 263 1.42e-91 273
MS.gene059798.t1 MTR_1g079260 54.608 293 102 6 5 287 1 272 8.66e-90 268
MS.gene059798.t1 MTR_1g079230 52.055 292 106 7 8 287 4 273 5.95e-89 266
MS.gene059798.t1 MTR_1g079850 54.054 296 100 6 7 285 3 279 4.22e-88 264
MS.gene059798.t1 MTR_1g079250 52.901 293 113 7 5 287 1 278 7.71e-85 256
MS.gene059798.t1 MTR_1g026510 51.351 296 114 8 5 285 1 281 2.82e-82 250
MS.gene059798.t1 MTR_1g100613 55.598 259 86 5 24 271 5 245 1.59e-81 246
MS.gene059798.t1 MTR_1g079350 48.630 292 120 9 5 285 1 273 3.30e-74 228
MS.gene059798.t1 MTR_1g079410 47.315 298 121 9 1 287 1 273 3.61e-74 228
MS.gene059798.t1 MTR_7g096300 52.652 264 96 8 9 268 5 243 9.01e-68 224
MS.gene059798.t1 MTR_1g079340 44.884 303 132 7 2 285 37 323 5.37e-64 204
MS.gene059798.t1 MTR_1g079400 39.073 302 130 5 8 288 12 280 6.98e-54 177
MS.gene059798.t1 MTR_1g079140 37.460 315 139 9 10 288 15 307 4.02e-52 173
MS.gene059798.t1 MTR_1g078470 55.491 173 71 4 113 285 16 182 2.06e-51 167
MS.gene059798.t1 MTR_1g076870 60.000 135 38 1 150 268 2 136 6.40e-49 159
MS.gene059798.t1 MTR_3g058640 73.394 109 24 3 145 251 1 106 2.16e-46 151
MS.gene059798.t1 MTR_7g112550 36.271 295 153 8 7 285 6 281 3.32e-44 152
MS.gene059798.t1 MTR_1g079240 50.588 170 73 4 116 285 19 177 5.69e-40 137
MS.gene059798.t1 MTR_1g083580 32.180 289 168 7 8 285 8 279 1.00e-38 137
MS.gene059798.t1 MTR_1g079350 52.000 150 51 4 5 150 1 133 1.56e-38 135
MS.gene059798.t1 MTR_7g112560 32.270 282 166 5 8 288 1 258 2.60e-35 128
MS.gene059798.t1 MTR_4g023570 33.217 286 138 8 8 288 1 238 1.47e-34 125
MS.gene059798.t1 MTR_1g079210 55.285 123 43 2 151 261 7 129 6.48e-34 120
MS.gene059798.t1 MTR_1g078460 63.043 92 31 1 3 94 62 150 2.29e-29 109
MS.gene059798.t1 MTR_2g042540 56.881 109 33 3 7 103 3 109 1.41e-27 103
MS.gene059798.t1 MTR_1g079130 35.450 189 98 3 123 287 1 189 6.71e-26 101
MS.gene059798.t1 MTR_7g096310 43.791 153 59 4 62 204 24 159 5.42e-24 95.9
MS.gene059798.t1 MTR_1g079220 53.623 69 28 2 187 254 1 66 6.50e-15 68.9
MS.gene059798.t1 MTR_1g079390 64.000 50 16 2 233 282 8 55 3.50e-13 63.5
MS.gene059798.t1 MTR_7g103380 21.070 299 191 8 7 287 18 289 8.08e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059798.t1 AT2G02360 35.915 284 144 9 9 285 15 267 2.03e-47 160
MS.gene059798.t1 AT1G80110 39.437 284 136 12 8 285 1 254 4.90e-46 155
MS.gene059798.t1 AT2G02340 35.563 284 158 6 8 285 36 300 1.34e-44 153
MS.gene059798.t1 AT1G09155 37.037 297 144 11 11 285 3 278 1.49e-42 147
MS.gene059798.t1 AT1G56240 35.932 295 150 10 11 285 4 279 7.05e-41 143
MS.gene059798.t1 AT1G56250 34.899 298 155 10 11 288 4 282 4.14e-39 138
MS.gene059798.t1 AT2G02250 34.875 281 155 10 8 285 47 302 6.09e-39 139
MS.gene059798.t1 AT2G02350 32.509 283 163 9 7 285 23 281 1.10e-38 137
MS.gene059798.t1 AT2G02240 35.018 277 153 7 11 285 64 315 9.79e-38 136
MS.gene059798.t1 AT2G02230 30.395 329 157 8 4 285 28 331 1.01e-37 136
MS.gene059798.t1 AT2G02320 32.509 283 157 9 10 285 42 297 1.55e-35 130
MS.gene059798.t1 AT2G02310 30.389 283 171 7 8 287 45 304 2.18e-34 127
MS.gene059798.t1 AT2G02300 30.345 290 152 9 7 287 33 281 6.13e-26 103
MS.gene059798.t1 AT5G24560 34.021 194 99 5 10 202 5 170 1.79e-24 97.8
MS.gene059798.t1 AT2G02350 31.293 147 95 3 142 285 21 164 1.19e-16 76.6
MS.gene059798.t1 AT3G53000 25.926 162 102 2 7 168 20 163 1.05e-12 67.4

Find 72 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCATTGTCGATGATGATA+TGG 0.272388 2.4:+19087798 None:intergenic
CATCATCGACAATGGTAAAA+AGG 0.276610 2.4:-19087792 MS.gene059798:intron
TAAGCCGCGTACTGAGTATT+TGG 0.305081 2.4:+19086302 None:intergenic
AAGCATTAAATCTGTTTGTT+TGG 0.314597 2.4:-19086198 MS.gene059798:CDS
GGATTCCTATGCATGATTCT+AGG 0.328000 2.4:-19087064 MS.gene059798:intron
AGAGAAAGCTTAGCAACTTT+AGG 0.332203 2.4:+19086374 None:intergenic
GTTCTCCAGAGGAGTGGTTA+TGG 0.363521 2.4:-19086032 MS.gene059798:CDS
TTCTCCAGAGGAGTGGTTAT+GGG 0.374782 2.4:-19086031 MS.gene059798:CDS
TACGGACTTCTTCATCTTTG+AGG 0.382370 2.4:+19086060 None:intergenic
TGCCGCCAATACTCCAAGTT+TGG 0.397082 2.4:+19086173 None:intergenic
AACGGAGATTTGTTTATTGA+AGG 0.403743 2.4:-19086005 MS.gene059798:CDS
AGAAGTTAGGAATAGAAGTT+AGG 0.414787 2.4:-19085979 None:intergenic
TTATTGAAGGAATAGAAGTT+AGG 0.418249 2.4:-19085992 MS.gene059798:CDS
GAGAGCAATTGAGGAATTGC+CGG 0.421392 2.4:-19088038 MS.gene059798:CDS
TTCTCGGAATGTCTTGTACT+TGG 0.432732 2.4:-19087308 MS.gene059798:CDS
TGGATCCAAACTTGGAGTAT+TGG 0.437987 2.4:-19086178 MS.gene059798:CDS
ATCCCATACGGTGTCTGAAT+CGG 0.445136 2.4:+19087928 None:intergenic
AGGAGTGGTTATGGGATTAA+CGG 0.449676 2.4:-19086023 MS.gene059798:CDS
TGTTTGTTTGGATCCAAACT+TGG 0.453402 2.4:-19086186 MS.gene059798:CDS
CAAACGATTGAGAGCAATTG+AGG 0.473901 2.4:-19088047 MS.gene059798:CDS
ATTGCGGCGATGCATCCTTC+CGG 0.474633 2.4:+19088019 None:intergenic
TCGTTCTCGCATGAAATTCG+TGG 0.475687 2.4:-19086350 MS.gene059798:CDS
TTCAAGATAATCTATGCCTA+TGG 0.482024 2.4:-19086272 MS.gene059798:CDS
CGTTCTCGCATGAAATTCGT+GGG 0.483185 2.4:-19086349 MS.gene059798:CDS
CAGCCGATTCAGACACCGTA+TGG 0.486804 2.4:-19087931 MS.gene059798:CDS
TGCTTAAATGTTGGTGTCGA+TGG 0.490783 2.4:-19086230 MS.gene059798:CDS
AAACAGATTTAATGCTTCTA+CGG 0.494107 2.4:+19086204 None:intergenic
ATTGAATGTCGGTGTGTGTA+TGG 0.498414 2.4:-19087098 MS.gene059798:CDS
ATACACACACCGACATTCAA+TGG 0.499460 2.4:+19087100 None:intergenic
CAACTCCCGTCGACGCTGGC+AGG 0.503986 2.4:-19087985 MS.gene059798:CDS
CGTCCTACTGTGAGAAGTGA+TGG 0.505305 2.4:-19086122 MS.gene059798:CDS
GTACAAGACATTCCGAGAAA+AGG 0.509189 2.4:+19087312 None:intergenic
ACTTGGAGTATTGGCGGCAG+CGG 0.509726 2.4:-19086169 MS.gene059798:CDS
TAATCCCATAACCACTCCTC+TGG 0.511429 2.4:+19086027 None:intergenic
TAGAGTTTATACCTTGAGGA+TGG 0.513208 2.4:+19087891 None:intergenic
GAGAGCCTGCCAGCGTCGAC+GGG 0.516241 2.4:+19087980 None:intergenic
AGAGAGCCTGCCAGCGTCGA+CGG 0.518925 2.4:+19087979 None:intergenic
GGGTGGTTGGAGATCGAGAT+GGG 0.521226 2.4:-19086101 MS.gene059798:CDS
ATCCAAACTTGGAGTATTGG+CGG 0.523611 2.4:-19086175 MS.gene059798:CDS
TTCTCGTAGGAGCATTTGCA+CGG 0.525879 2.4:+19087849 None:intergenic
GGGTTCGTTCTTGTATCCAT+AGG 0.539507 2.4:+19086256 None:intergenic
CAAGACATTCCGAGAAAAGG+AGG 0.557575 2.4:+19087315 None:intergenic
ATGATAGAGTTTATACCTTG+AGG 0.566862 2.4:+19087887 None:intergenic
AGAGTTTATACCTTGAGGAT+GGG 0.570269 2.4:+19087892 None:intergenic
GTGTGTATGGTTCGAAAGAG+TGG 0.572947 2.4:-19087085 MS.gene059798:CDS
CAGCGGCACTACAACAAAGA+AGG 0.573641 2.4:-19086152 MS.gene059798:CDS
TTTCTGACTTCCCATCCTCA+AGG 0.581042 2.4:-19087902 MS.gene059798:CDS
TGGGTGGTTGGAGATCGAGA+TGG 0.585691 2.4:-19086102 MS.gene059798:CDS
TCCTCTGGAGAACACTCATA+CGG 0.591098 2.4:+19086042 None:intergenic
TTTCAATTGCACAGAAAGAG+TGG 0.591235 2.4:-19087158 MS.gene059798:intron
TGTGAGAAGTGATGGGTGGT+TGG 0.592083 2.4:-19086114 MS.gene059798:CDS
CATACAACTCCCGTCGACGC+TGG 0.593376 2.4:-19087989 MS.gene059798:CDS
AGTCAGAAAACGATCCCATA+CGG 0.602665 2.4:+19087916 None:intergenic
GACACCAACATTTAAGCACA+CGG 0.612053 2.4:+19086235 None:intergenic
TGCCATATCATCATCGACAA+TGG 0.620692 2.4:-19087800 MS.gene059798:CDS
GATCTCTCACCATTGAATGT+CGG 0.630700 2.4:-19087109 MS.gene059798:CDS
AGCCGATTCAGACACCGTAT+GGG 0.632248 2.4:-19087930 MS.gene059798:CDS
ACTAACCTAGAATCATGCAT+AGG 0.637939 2.4:+19087059 None:intergenic
GTAGGAGCATTTGCACGGGA+AGG 0.639415 2.4:+19087854 None:intergenic
GCAATTGAGGAATTGCCGGA+AGG 0.652012 2.4:-19088034 MS.gene059798:CDS
CACCCATCACTTCTCACAGT+AGG 0.653347 2.4:+19086119 None:intergenic
GTACTGAGTATTTGGAGACA+AGG 0.657611 2.4:+19086310 None:intergenic
ATGAGTGTTCTCCAGAGGAG+TGG 0.659164 2.4:-19086038 MS.gene059798:CDS
ACACCAACATTTAAGCACAC+GGG 0.659869 2.4:+19086236 None:intergenic
TCCGTATGAGTGTTCTCCAG+AGG 0.661519 2.4:-19086043 MS.gene059798:CDS
TCTCGTAGGAGCATTTGCAC+GGG 0.664381 2.4:+19087850 None:intergenic
AAGACATTCCGAGAAAAGGA+GGG 0.667476 2.4:+19087316 None:intergenic
GTCTCCAAATACTCAGTACG+CGG 0.668852 2.4:-19086306 MS.gene059798:CDS
GTCCTACTGTGAGAAGTGAT+GGG 0.673838 2.4:-19086121 MS.gene059798:CDS
GAACCCGTGTGCTTAAATGT+TGG 0.701348 2.4:-19086239 MS.gene059798:CDS
CTACTGTGAGAAGTGATGGG+TGG 0.716180 2.4:-19086118 MS.gene059798:CDS
AGTTGTATGAGAGAGTATTG+CGG 0.764694 2.4:+19088003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTATAGTTAATTTTAATTT+GGG + chr2.4:19087429-19087448 None:intergenic 10.0%
!!! ATTCATTTTTTACTAAAAAA+TGG - chr2.4:19086390-19086409 MS.gene059798:intron 10.0%
!! AGAGTTAATTAAGTTAATTA+AGG + chr2.4:19087183-19087202 None:intergenic 15.0%
!! TAATATTAATCTAAACTGTT+AGG - chr2.4:19087207-19087226 MS.gene059798:intron 15.0%
!!! GAGTATAGTTAATTTTAATT+TGG + chr2.4:19087430-19087449 None:intergenic 15.0%
!! AATTAAGTTAATTAAGGCAT+TGG + chr2.4:19087177-19087196 None:intergenic 20.0%
!! TAATACTTCATTAATTCAGT+TGG + chr2.4:19087135-19087154 None:intergenic 20.0%
!! TACCAATTTCTTGAATATTA+GGG - chr2.4:19086277-19086296 MS.gene059798:CDS 20.0%
!! TGAATCATACAATAATAAAC+TGG + chr2.4:19086375-19086394 None:intergenic 20.0%
!! TGTCTGATAATTCTTTATAT+TGG - chr2.4:19087489-19087508 MS.gene059798:intron 20.0%
!! TGTTAAAAATTTCCAGTTTA+TGG - chr2.4:19087052-19087071 MS.gene059798:intron 20.0%
!!! GATTTTGAGACATTTATATA+TGG + chr2.4:19087382-19087401 None:intergenic 20.0%
!!! TTTATTTCCTATCTTTTGAT+TGG - chr2.4:19087288-19087307 MS.gene059798:intron 20.0%
!!! TTTTGCACAATTTTTTTTAC+AGG - chr2.4:19087632-19087651 MS.gene059798:intron 20.0%
! AAACAGATTTAATGCTTCTA+CGG + chr2.4:19087831-19087850 None:intergenic 25.0%
! AAGCATTAAATCTGTTTGTT+TGG - chr2.4:19087834-19087853 MS.gene059798:CDS 25.0%
! AGTTCATCATATAATCAGTT+AGG - chr2.4:19087542-19087561 MS.gene059798:intron 25.0%
! CTACCAATTTCTTGAATATT+AGG - chr2.4:19086276-19086295 MS.gene059798:CDS 25.0%
! TATAAAGAATTATCAGACAG+TGG + chr2.4:19087488-19087507 None:intergenic 25.0%
! TGAATAGTCTAACAAGTATT+TGG + chr2.4:19087404-19087423 None:intergenic 25.0%
! TTAAACCAATTAAGTGTGAT+CGG + chr2.4:19086560-19086579 None:intergenic 25.0%
! TTATTGAAGGAATAGAAGTT+AGG - chr2.4:19088040-19088059 MS.gene059798:CDS 25.0%
!!! AGAACGAAAAGTTTTAGAAA+TGG + chr2.4:19086080-19086099 None:intergenic 25.0%
AACAAGACCAATCAAAAGAT+AGG + chr2.4:19087298-19087317 None:intergenic 30.0%
AGCCCTAATATTCAAGAAAT+TGG + chr2.4:19086282-19086301 None:intergenic 30.0%
ATGATAGAGTTTATACCTTG+AGG + chr2.4:19086148-19086167 None:intergenic 30.0%
CAGTTTATGGTGAATACATA+GGG - chr2.4:19087065-19087084 MS.gene059798:CDS 30.0%
TGAGACATTTATATATGGCA+TGG + chr2.4:19087377-19087396 None:intergenic 30.0%
TGGGTAAATTTCCTTAATGA+GGG + chr2.4:19087322-19087341 None:intergenic 30.0%
TTCAAGATAATCTATGCCTA+TGG - chr2.4:19087760-19087779 MS.gene059798:intron 30.0%
! AACGGAGATTTGTTTATTGA+AGG - chr2.4:19088027-19088046 MS.gene059798:CDS 30.0%
! AACTTGTTTATAGCGTGTTT+GGG - chr2.4:19086445-19086464 MS.gene059798:intron 30.0%
!! AAGTTAATTAAGGCATTGGA+TGG + chr2.4:19087173-19087192 None:intergenic 30.0%
!! GTATTGATGTGTTTTTGTCT+AGG - chr2.4:19086659-19086678 MS.gene059798:intron 30.0%
!!! ATCGCACTCAACATTTTTTA+TGG - chr2.4:19087254-19087273 MS.gene059798:intron 30.0%
!!! TCGCACTCAACATTTTTTAT+GGG - chr2.4:19087255-19087274 MS.gene059798:intron 30.0%
AAGATGTGTGTTTGGATTGA+AGG + chr2.4:19086635-19086654 None:intergenic 35.0%
ACTAACCTAGAATCATGCAT+AGG + chr2.4:19086976-19086995 None:intergenic 35.0%
AGAGAAAGCTTAGCAACTTT+AGG + chr2.4:19087661-19087680 None:intergenic 35.0%
AGAGTTTATACCTTGAGGAT+GGG + chr2.4:19086143-19086162 None:intergenic 35.0%
ATACACCAAAGATGTGTGTT+TGG + chr2.4:19086643-19086662 None:intergenic 35.0%
ATACCTCAATATCAGCTTGA+TGG - chr2.4:19087458-19087477 MS.gene059798:intron 35.0%
ATAGTCCGATCACACTTAAT+TGG - chr2.4:19086552-19086571 MS.gene059798:intron 35.0%
ATCAAGCTGATATTGAGGTA+TGG + chr2.4:19087459-19087478 None:intergenic 35.0%
CATCATCGACAATGGTAAAA+AGG - chr2.4:19086240-19086259 MS.gene059798:CDS 35.0%
CCAGTTTATGGTGAATACAT+AGG - chr2.4:19087064-19087083 MS.gene059798:intron 35.0%
CCTATGTATTCACCATAAAC+TGG + chr2.4:19087067-19087086 None:intergenic 35.0%
CTGGGTAAATTTCCTTAATG+AGG + chr2.4:19087323-19087342 None:intergenic 35.0%
GGGTAAATTTCCTTAATGAG+GGG + chr2.4:19087321-19087340 None:intergenic 35.0%
TACCATTGTCGATGATGATA+TGG + chr2.4:19086237-19086256 None:intergenic 35.0%
TAGAGTTTATACCTTGAGGA+TGG + chr2.4:19086144-19086163 None:intergenic 35.0%
TCAATCCAAACACACATCTT+TGG - chr2.4:19086635-19086654 MS.gene059798:intron 35.0%
TGATATTGAGGTATGGATTC+AGG + chr2.4:19087452-19087471 None:intergenic 35.0%
TGTTTGTTTGGATCCAAACT+TGG - chr2.4:19087846-19087865 MS.gene059798:CDS 35.0%
TTTCAATTGCACAGAAAGAG+TGG - chr2.4:19086874-19086893 MS.gene059798:intron 35.0%
! CAACTTGTTTATAGCGTGTT+TGG - chr2.4:19086444-19086463 MS.gene059798:intron 35.0%
! TTTCTTTTCCCTCCTTTTCT+CGG - chr2.4:19086708-19086727 MS.gene059798:intron 35.0%
!! AGTTGTATGAGAGAGTATTG+CGG + chr2.4:19086032-19086051 None:intergenic 35.0%
!! TTAAGGCATTGGATGGTAAT+AGG + chr2.4:19087166-19087185 None:intergenic 35.0%
AAGACATTCCGAGAAAAGGA+GGG + chr2.4:19086719-19086738 None:intergenic 40.0%
ACACCAACATTTAAGCACAC+GGG + chr2.4:19087799-19087818 None:intergenic 40.0%
AGGAGTGGTTATGGGATTAA+CGG - chr2.4:19088009-19088028 MS.gene059798:CDS 40.0%
AGTCAGAAAACGATCCCATA+CGG + chr2.4:19086119-19086138 None:intergenic 40.0%
ATACACACACCGACATTCAA+TGG + chr2.4:19086935-19086954 None:intergenic 40.0%
ATTGAATGTCGGTGTGTGTA+TGG - chr2.4:19086934-19086953 MS.gene059798:intron 40.0%
CAAACGATTGAGAGCAATTG+AGG - chr2.4:19085985-19086004 MS.gene059798:CDS 40.0%
GACACCAACATTTAAGCACA+CGG + chr2.4:19087800-19087819 None:intergenic 40.0%
GATCTCTCACCATTGAATGT+CGG - chr2.4:19086923-19086942 MS.gene059798:intron 40.0%
GGATTCCTATGCATGATTCT+AGG - chr2.4:19086968-19086987 MS.gene059798:intron 40.0%
GTACAAGACATTCCGAGAAA+AGG + chr2.4:19086723-19086742 None:intergenic 40.0%
GTACTGAGTATTTGGAGACA+AGG + chr2.4:19087725-19087744 None:intergenic 40.0%
TACGGACTTCTTCATCTTTG+AGG + chr2.4:19087975-19087994 None:intergenic 40.0%
TGCCATATCATCATCGACAA+TGG - chr2.4:19086232-19086251 MS.gene059798:CDS 40.0%
TGGATCCAAACTTGGAGTAT+TGG - chr2.4:19087854-19087873 MS.gene059798:CDS 40.0%
TGTGTTTGGATTGAAGGCTT+AGG + chr2.4:19086629-19086648 None:intergenic 40.0%
TTCTCGGAATGTCTTGTACT+TGG - chr2.4:19086724-19086743 MS.gene059798:intron 40.0%
! AGATAGAGAGCTTTTCTCGT+AGG + chr2.4:19086199-19086218 None:intergenic 40.0%
!! ATCCAAACTTGGAGTATTGG+CGG - chr2.4:19087857-19087876 MS.gene059798:CDS 40.0%
!! TGCTTAAATGTTGGTGTCGA+TGG - chr2.4:19087802-19087821 MS.gene059798:CDS 40.0%
ACACCACATTTAGCAGCAAC+TGG + chr2.4:19087342-19087361 None:intergenic 45.0%
ATCCCATACGGTGTCTGAAT+CGG + chr2.4:19086107-19086126 None:intergenic 45.0%
CAAAAACGACACAAGACTGC+AGG + chr2.4:19086343-19086362 None:intergenic 45.0%
CAAGACATTCCGAGAAAAGG+AGG + chr2.4:19086720-19086739 None:intergenic 45.0%
CACCACATTTAGCAGCAACT+GGG + chr2.4:19087341-19087360 None:intergenic 45.0%
CCACCATCAAGCTGATATTG+AGG + chr2.4:19087464-19087483 None:intergenic 45.0%
CCCCACACACTAAAATGTCA+CGG - chr2.4:19087109-19087128 MS.gene059798:CDS 45.0%
CCTCAATATCAGCTTGATGG+TGG - chr2.4:19087461-19087480 MS.gene059798:intron 45.0%
CGTTCTCGCATGAAATTCGT+GGG - chr2.4:19087683-19087702 MS.gene059798:intron 45.0%
GAACCCGTGTGCTTAAATGT+TGG - chr2.4:19087793-19087812 MS.gene059798:CDS 45.0%
GAGAGCAATTGAGGAATTGC+CGG - chr2.4:19085994-19086013 MS.gene059798:CDS 45.0%
GGGTTCGTTCTTGTATCCAT+AGG + chr2.4:19087779-19087798 None:intergenic 45.0%
GTCCTACTGTGAGAAGTGAT+GGG - chr2.4:19087911-19087930 MS.gene059798:CDS 45.0%
GTCTCCAAATACTCAGTACG+CGG - chr2.4:19087726-19087745 MS.gene059798:intron 45.0%
GTGAATACATAGGGAATCCG+AGG - chr2.4:19087074-19087093 MS.gene059798:CDS 45.0%
GTGTGTATGGTTCGAAAGAG+TGG - chr2.4:19086947-19086966 MS.gene059798:intron 45.0%
TAAGCCGCGTACTGAGTATT+TGG + chr2.4:19087733-19087752 None:intergenic 45.0%
TAATCCCATAACCACTCCTC+TGG + chr2.4:19088008-19088027 None:intergenic 45.0%
TACCCAGTTGCTGCTAAATG+TGG - chr2.4:19087336-19087355 MS.gene059798:CDS 45.0%
TCGTTCTCGCATGAAATTCG+TGG - chr2.4:19087682-19087701 MS.gene059798:intron 45.0%
TTCTCCAGAGGAGTGGTTAT+GGG - chr2.4:19088001-19088020 MS.gene059798:CDS 45.0%
TTTCTGACTTCCCATCCTCA+AGG - chr2.4:19086130-19086149 MS.gene059798:CDS 45.0%
! TCCTCTGGAGAACACTCATA+CGG + chr2.4:19087993-19088012 None:intergenic 45.0%
!! ACATTTTAGTGTGTGGGGTC+GGG + chr2.4:19087107-19087126 None:intergenic 45.0%
!! CCGTGACATTTTAGTGTGTG+GGG + chr2.4:19087112-19087131 None:intergenic 45.0%
!! GACATTTTAGTGTGTGGGGT+CGG + chr2.4:19087108-19087127 None:intergenic 45.0%
!! GCCGTGACATTTTAGTGTGT+GGG + chr2.4:19087113-19087132 None:intergenic 45.0%
!! TGGTCTTGTTCCCCTCATTA+AGG - chr2.4:19087308-19087327 MS.gene059798:CDS 45.0%
!! TTCTCGTAGGAGCATTTGCA+CGG + chr2.4:19086186-19086205 None:intergenic 45.0%
!!! TTTTTAAAAATATCAAAATA+TGG + chr2.4:19086493-19086512 None:intergenic 5.0%
ATGAGTGTTCTCCAGAGGAG+TGG - chr2.4:19087994-19088013 MS.gene059798:CDS 50.0%
CACCCATCACTTCTCACAGT+AGG + chr2.4:19087916-19087935 None:intergenic 50.0%
CAGCGGCACTACAACAAAGA+AGG - chr2.4:19087880-19087899 MS.gene059798:CDS 50.0%
CGTCCTACTGTGAGAAGTGA+TGG - chr2.4:19087910-19087929 MS.gene059798:CDS 50.0%
GCAATTGAGGAATTGCCGGA+AGG - chr2.4:19085998-19086017 MS.gene059798:CDS 50.0%
GTTCTCCAGAGGAGTGGTTA+TGG - chr2.4:19088000-19088019 MS.gene059798:CDS 50.0%
TCCGTATGAGTGTTCTCCAG+AGG - chr2.4:19087989-19088008 MS.gene059798:CDS 50.0%
TGCCGCCAATACTCCAAGTT+TGG + chr2.4:19087862-19087881 None:intergenic 50.0%
! AGCCGATTCAGACACCGTAT+GGG - chr2.4:19086102-19086121 MS.gene059798:CDS 50.0%
! CTACTGTGAGAAGTGATGGG+TGG - chr2.4:19087914-19087933 MS.gene059798:CDS 50.0%
!! CATTTTAGTGTGTGGGGTCG+GGG + chr2.4:19087106-19087125 None:intergenic 50.0%
!! GGCCGTGACATTTTAGTGTG+TGG + chr2.4:19087114-19087133 None:intergenic 50.0%
!! TCTCGTAGGAGCATTTGCAC+GGG + chr2.4:19086185-19086204 None:intergenic 50.0%
!! TGTGAGAAGTGATGGGTGGT+TGG - chr2.4:19087918-19087937 MS.gene059798:CDS 50.0%
AACGACACAAGACTGCAGGC+CGG + chr2.4:19086339-19086358 None:intergenic 55.0%
ATTGCGGCGATGCATCCTTC+CGG + chr2.4:19086016-19086035 None:intergenic 55.0%
GGGTGGTTGGAGATCGAGAT+GGG - chr2.4:19087931-19087950 MS.gene059798:CDS 55.0%
TGGGTGGTTGGAGATCGAGA+TGG - chr2.4:19087930-19087949 MS.gene059798:CDS 55.0%
! CAGCCGATTCAGACACCGTA+TGG - chr2.4:19086101-19086120 MS.gene059798:CDS 55.0%
!! ACTTGGAGTATTGGCGGCAG+CGG - chr2.4:19087863-19087882 MS.gene059798:CDS 55.0%
!! GTAGGAGCATTTGCACGGGA+AGG + chr2.4:19086181-19086200 None:intergenic 55.0%
CATACAACTCCCGTCGACGC+TGG - chr2.4:19086043-19086062 MS.gene059798:CDS 60.0%
TTTCCTGTGATCCCCCGCTC+CGG - chr2.4:19086317-19086336 MS.gene059798:CDS 60.0%
ACAAGACTGCAGGCCGGAGC+GGG + chr2.4:19086333-19086352 None:intergenic 65.0%
CACAAGACTGCAGGCCGGAG+CGG + chr2.4:19086334-19086353 None:intergenic 65.0%
TGGGGTCGGGGTTCGAACCT+CGG + chr2.4:19087094-19087113 None:intergenic 65.0%
! AGAGAGCCTGCCAGCGTCGA+CGG + chr2.4:19086056-19086075 None:intergenic 65.0%
AAGACTGCAGGCCGGAGCGG+GGG + chr2.4:19086331-19086350 None:intergenic 70.0%
CAACTCCCGTCGACGCTGGC+AGG - chr2.4:19086047-19086066 MS.gene059798:CDS 70.0%
CAAGACTGCAGGCCGGAGCG+GGG + chr2.4:19086332-19086351 None:intergenic 70.0%
!! GAGAGCCTGCCAGCGTCGAC+GGG + chr2.4:19086055-19086074 None:intergenic 70.0%
AGGCCGGAGCGGGGGATCAC+AGG + chr2.4:19086323-19086342 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 19085980 19088074 19085980 ID=MS.gene059798
chr2.4 mRNA 19085980 19088074 19085980 ID=MS.gene059798.t1;Parent=MS.gene059798
chr2.4 exon 19087793 19088074 19087793 ID=MS.gene059798.t1.exon1;Parent=MS.gene059798.t1
chr2.4 CDS 19087793 19088074 19087793 ID=cds.MS.gene059798.t1;Parent=MS.gene059798.t1
chr2.4 exon 19087300 19087361 19087300 ID=MS.gene059798.t1.exon2;Parent=MS.gene059798.t1
chr2.4 CDS 19087300 19087361 19087300 ID=cds.MS.gene059798.t1;Parent=MS.gene059798.t1
chr2.4 exon 19087065 19087166 19087065 ID=MS.gene059798.t1.exon3;Parent=MS.gene059798.t1
chr2.4 CDS 19087065 19087166 19087065 ID=cds.MS.gene059798.t1;Parent=MS.gene059798.t1
chr2.4 exon 19085980 19086400 19085980 ID=MS.gene059798.t1.exon4;Parent=MS.gene059798.t1
chr2.4 CDS 19085980 19086400 19085980 ID=cds.MS.gene059798.t1;Parent=MS.gene059798.t1
Gene Sequence

>MS.gene059798

ATGAGCAAACGATTGAGAGCAATTGAGGAATTGCCGGAAGGATGCATCGCCGCAATACTCTCTCATACAACTCCCGTCGACGCTGGCAGGCTCTCTGCCATTTCTAAAACTTTTCGTTCTGCAGCCGATTCAGACACCGTATGGGATCGTTTTCTGACTTCCCATCCTCAAGGTATAAACTCTATCATCTCAGATTCTCCTTCCCGTGCAAATGCTCCTACGAGAAAAGCTCTCTATCTTGCTCTATCTGATTGCCATATCATCATCGACAATGGTAAAAAGGTATTCTTCATTATCTACCAATTTCTTGAATATTAGGGCTTGTTGTTTAGCATTGTTTCCTGTGATCCCCCGCTCCGGCCTGCAGTCTTGTGTCGTTTTTGTCTGCTATACCAGTTTATTATTGTATGATTCATTTTTTACTAAAAAATGGTAAATATTATGTGAGAGATTCATATTAGACGCAACTTGTTTATAGCGTGTTTGGGTTGAAGCGTTTACGAGAGAAGTCCATATTTTGATATTTTTAAAAAAAAAACAACTAAAAGAACATCATGAATAATAATCATATAATAGTCCGATCACACTTAATTGGTTTAAAGTTTTTTCTAGAATCAGTAATTTAAAGAAAAATAAATTTCATGCTCCTAAGCCTTCAATCCAAACACACATCTTTGGTGTATTGATGTGTTTTTGTCTAGGTTATCTGCTAGTGTAGTGCTTTCGTATTTCTTTTCCCTCCTTTTCTCGGAATGTCTTGTACTTGGAAGCGAATGTTATTTATATTATTGTTTGTTAAACAAAATAATCAAAACACAAGAAGTGCAAACATTAAAAGAATAAAATGCTTAGCGCTAAATGCTAATAGCAATTGTATATGTTGAAATGCAGAGCTTTCAATTGCACAGAAAGAGTGGACAAAAGTGCTACATGCTTGCTGCTAGATCTCTCACCATTGAATGTCGGTGTGTGTATGGTTCGAAAGAGTGGATTCCTATGCATGATTCTAGGTTAGTTCTTTAGTTTTCTATTTGTATTTTTTTCGTGTTTTGTTTTTGTCAAATAGTTTAATTGTTAAAAATTTCCAGTTTATGGTGAATACATAGGGAATCCGAGGTTCGAACCCCGACCCCACACACTAAAATGTCACGGCCAACTGAATTAATGAAGTATTACATTATTTCCTATTACCATCCAATGCCTTAATTAACTTAATTAACTCTTAATTAATATTAATCTAAACTGTTAGGAATACTAAATATGTGAATCAATGCATCGCACTCAACATTTTTTATGGGCTTGAATGATTTTATTTCCTATCTTTTGATTGGTCTTGTTCCCCTCATTAAGGAAATTTACCCAGTTGCTGCTAAATGTGGTGTTCTACATCTAGACCATGCCATATATAAATGTCTCAAAATCCAAATACTTGTTAGACTATTCAATCCCAAATTAAAATTAACTATACTCCTGAATCCATACCTCAATATCAGCTTGATGGTGGTCCACTGTCTGATAATTCTTTATATTGGATAGCAAACAATATAATCATAATACTGAGAAGTTCATCATATAATCAGTTAGGCTTGAAATAATTTAGTTATACATTTTCAACTATTTTTCTCTGTTCTTGTATTCTTATCTTTGCAACTTTTTGCACAATTTTTTTTACAGGTTTCCTAAAGTTGCTAAGCTTTCTCTTTCGTTCTCGCATGAAATTCGTGGGACTATTAACACTCTTTCCTTGTCTCCAAATACTCAGTACGCGGCTTATCTCGTGTTCAAGATAATCTATGCCTATGGATACAAGAACGAACCCGTGTGCTTAAATGTTGGTGTCGATGGTGACCGTAGAAGCATTAAATCTGTTTGTTTGGATCCAAACTTGGAGTATTGGCGGCAGCGGCACTACAACAAAGAAGGATTGCAGCGTCCTACTGTGAGAAGTGATGGGTGGTTGGAGATCGAGATGGGAAAATTCTTCAATTCAAACCTCAAAGATGAAGAAGTCCGTATGAGTGTTCTCCAGAGGAGTGGTTATGGGATTAACGGAGATTTGTTTATTGAAGGAATAGAAGTTAGGAATAGAAGTTAG
Protein sequence

>MS.gene059798.t1

MSKRLRAIEELPEGCIAAILSHTTPVDAGRLSAISKTFRSAADSDTVWDRFLTSHPQGINSIISDSPSRANAPTRKALYLALSDCHIIIDNGKKCSAFVFLFPPFLGMSCTWKRIKSGQKCYMLAARSLTIECRCVYGSKEWIPMHDSRFPKVAKLSLSFSHEIRGTINTLSLSPNTQYAAYLVFKIIYAYGYKNEPVCLNVGVDGDRRSIKSVCLDPNLEYWRQRHYNKEGLQRPTVRSDGWLEIEMGKFFNSNLKDEEVRMSVLQRSGYGINGDLFIEGIEVRNRS