Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006296.t1 | XP_013469665.1 | 94.3 | 279 | 12 | 2 | 1 | 279 | 1 | 275 | 4.20E-146 | 527.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006296.t1 | Q9ZVQ6 | 42.9 | 275 | 134 | 5 | 4 | 275 | 14 | 268 | 9.8e-59 | 228.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006296.t1 | G8A220 | 94.3 | 279 | 12 | 2 | 1 | 279 | 1 | 275 | 3.1e-146 | 527.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006296.t1 | MTR_1g100597 | 94.265 | 279 | 12 | 2 | 1 | 279 | 1 | 275 | 0.0 | 533 |
MS.gene006296.t1 | MTR_1g079370 | 73.188 | 276 | 63 | 1 | 1 | 276 | 1 | 265 | 3.86e-146 | 410 |
MS.gene006296.t1 | MTR_1g079180 | 73.835 | 279 | 56 | 4 | 1 | 276 | 1 | 265 | 3.33e-143 | 403 |
MS.gene006296.t1 | MTR_1g079260 | 70.423 | 284 | 70 | 3 | 1 | 279 | 1 | 275 | 1.78e-141 | 399 |
MS.gene006296.t1 | MTR_1g079230 | 69.643 | 280 | 80 | 2 | 1 | 279 | 1 | 276 | 4.93e-140 | 395 |
MS.gene006296.t1 | MTR_1g100613 | 80.000 | 240 | 48 | 0 | 20 | 259 | 5 | 244 | 8.41e-137 | 386 |
MS.gene006296.t1 | MTR_1g079460 | 69.149 | 282 | 71 | 2 | 1 | 279 | 1 | 269 | 1.23e-136 | 386 |
MS.gene006296.t1 | MTR_1g079200 | 70.463 | 281 | 61 | 4 | 1 | 276 | 1 | 264 | 2.00e-134 | 380 |
MS.gene006296.t1 | MTR_1g079380 | 71.942 | 278 | 67 | 1 | 1 | 278 | 1 | 267 | 1.27e-133 | 380 |
MS.gene006296.t1 | MTR_1g079850 | 68.662 | 284 | 84 | 3 | 1 | 279 | 1 | 284 | 3.27e-131 | 373 |
MS.gene006296.t1 | MTR_3g006850 | 64.262 | 305 | 79 | 5 | 3 | 279 | 16 | 318 | 2.44e-123 | 355 |
MS.gene006296.t1 | MTR_1g079250 | 65.385 | 286 | 87 | 6 | 1 | 279 | 1 | 281 | 1.08e-113 | 329 |
MS.gene006296.t1 | MTR_1g026510 | 61.168 | 291 | 96 | 7 | 1 | 279 | 1 | 286 | 1.79e-112 | 327 |
MS.gene006296.t1 | MTR_3g452600 | 61.594 | 276 | 91 | 2 | 4 | 279 | 10 | 270 | 6.77e-112 | 324 |
MS.gene006296.t1 | MTR_3g450990 | 55.442 | 294 | 96 | 4 | 4 | 279 | 10 | 286 | 1.41e-99 | 293 |
MS.gene006296.t1 | MTR_1g079410 | 55.396 | 278 | 105 | 4 | 5 | 276 | 9 | 273 | 5.20e-99 | 291 |
MS.gene006296.t1 | MTR_2g079100 | 58.608 | 273 | 92 | 4 | 3 | 273 | 8 | 261 | 6.46e-98 | 288 |
MS.gene006296.t1 | MTR_1g079350 | 54.007 | 287 | 109 | 6 | 1 | 276 | 1 | 275 | 5.18e-93 | 276 |
MS.gene006296.t1 | MTR_1g079340 | 52.667 | 300 | 104 | 8 | 1 | 276 | 40 | 325 | 8.48e-85 | 257 |
MS.gene006296.t1 | MTR_1g079140 | 47.508 | 301 | 129 | 6 | 4 | 279 | 13 | 309 | 7.78e-84 | 254 |
MS.gene006296.t1 | MTR_7g096300 | 58.397 | 262 | 83 | 5 | 1 | 256 | 1 | 242 | 1.54e-83 | 266 |
MS.gene006296.t1 | MTR_1g079400 | 47.872 | 282 | 122 | 3 | 5 | 276 | 13 | 279 | 1.59e-80 | 244 |
MS.gene006296.t1 | MTR_1g078470 | 60.104 | 193 | 61 | 3 | 84 | 276 | 8 | 184 | 8.70e-74 | 224 |
MS.gene006296.t1 | MTR_7g112550 | 44.291 | 289 | 137 | 10 | 2 | 276 | 5 | 283 | 1.56e-69 | 216 |
MS.gene006296.t1 | MTR_1g083580 | 40.860 | 279 | 158 | 5 | 2 | 276 | 6 | 281 | 5.60e-65 | 205 |
MS.gene006296.t1 | MTR_7g112560 | 39.711 | 277 | 145 | 7 | 4 | 277 | 1 | 258 | 3.39e-62 | 197 |
MS.gene006296.t1 | MTR_1g079240 | 57.368 | 190 | 59 | 4 | 87 | 276 | 12 | 179 | 3.08e-61 | 192 |
MS.gene006296.t1 | MTR_1g076870 | 70.149 | 134 | 35 | 2 | 128 | 256 | 2 | 135 | 1.89e-59 | 186 |
MS.gene006296.t1 | MTR_4g023570 | 37.319 | 276 | 131 | 7 | 4 | 276 | 1 | 237 | 3.85e-52 | 171 |
MS.gene006296.t1 | MTR_1g079210 | 66.667 | 123 | 40 | 1 | 129 | 250 | 7 | 129 | 6.11e-46 | 151 |
MS.gene006296.t1 | MTR_1g079130 | 44.444 | 189 | 92 | 2 | 101 | 276 | 1 | 189 | 1.54e-44 | 149 |
MS.gene006296.t1 | MTR_1g079350 | 59.854 | 137 | 42 | 3 | 1 | 128 | 1 | 133 | 1.08e-43 | 148 |
MS.gene006296.t1 | MTR_2g042540 | 64.762 | 105 | 35 | 2 | 1 | 103 | 1 | 105 | 9.89e-37 | 127 |
MS.gene006296.t1 | MTR_1g078460 | 71.264 | 87 | 25 | 0 | 1 | 87 | 64 | 150 | 5.16e-36 | 126 |
MS.gene006296.t1 | MTR_7g096310 | 56.061 | 132 | 50 | 3 | 57 | 186 | 38 | 163 | 3.38e-35 | 124 |
MS.gene006296.t1 | MTR_3g058640 | 54.867 | 113 | 38 | 1 | 128 | 240 | 7 | 106 | 3.95e-34 | 120 |
MS.gene006296.t1 | MTR_7g103380 | 26.316 | 285 | 173 | 5 | 6 | 275 | 21 | 283 | 7.45e-30 | 114 |
MS.gene006296.t1 | MTR_0113s0040 | 30.846 | 201 | 124 | 3 | 2 | 188 | 20 | 219 | 4.01e-24 | 99.0 |
MS.gene006296.t1 | MTR_1g101390 | 38.621 | 145 | 86 | 2 | 2 | 144 | 26 | 169 | 4.53e-23 | 96.3 |
MS.gene006296.t1 | MTR_1g079220 | 60.759 | 79 | 18 | 1 | 165 | 243 | 1 | 66 | 1.09e-22 | 89.4 |
MS.gene006296.t1 | MTR_4g083970 | 26.818 | 220 | 126 | 4 | 63 | 277 | 102 | 291 | 1.60e-20 | 89.4 |
MS.gene006296.t1 | MTR_0002s0020 | 30.539 | 167 | 106 | 3 | 6 | 165 | 24 | 187 | 1.53e-18 | 83.6 |
MS.gene006296.t1 | MTR_4g102770 | 33.333 | 144 | 92 | 2 | 6 | 146 | 21 | 163 | 3.96e-18 | 82.4 |
MS.gene006296.t1 | MTR_5g010800 | 30.137 | 146 | 95 | 4 | 6 | 147 | 19 | 161 | 4.47e-16 | 76.6 |
MS.gene006296.t1 | MTR_1g079390 | 72.000 | 50 | 12 | 2 | 222 | 271 | 8 | 55 | 3.74e-15 | 68.6 |
MS.gene006296.t1 | MTR_1g079190 | 73.171 | 41 | 11 | 0 | 228 | 268 | 134 | 174 | 2.34e-12 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006296.t1 | AT2G02360 | 42.909 | 275 | 134 | 5 | 4 | 275 | 14 | 268 | 3.06e-74 | 228 |
MS.gene006296.t1 | AT1G80110 | 43.542 | 271 | 134 | 6 | 6 | 275 | 3 | 255 | 1.22e-67 | 211 |
MS.gene006296.t1 | AT2G02240 | 42.336 | 274 | 138 | 5 | 4 | 275 | 61 | 316 | 2.02e-64 | 204 |
MS.gene006296.t1 | AT2G02340 | 42.446 | 278 | 142 | 5 | 4 | 275 | 36 | 301 | 3.58e-64 | 204 |
MS.gene006296.t1 | AT2G02230 | 37.540 | 309 | 156 | 7 | 4 | 279 | 32 | 336 | 2.44e-63 | 202 |
MS.gene006296.t1 | AT2G02250 | 41.667 | 276 | 138 | 8 | 4 | 275 | 47 | 303 | 3.44e-63 | 201 |
MS.gene006296.t1 | AT1G09155 | 41.935 | 279 | 152 | 6 | 7 | 276 | 3 | 280 | 3.94e-63 | 200 |
MS.gene006296.t1 | AT1G56250 | 41.429 | 280 | 154 | 5 | 7 | 277 | 4 | 282 | 7.15e-61 | 194 |
MS.gene006296.t1 | AT1G56240 | 41.007 | 278 | 154 | 5 | 7 | 275 | 4 | 280 | 2.54e-59 | 190 |
MS.gene006296.t1 | AT2G02350 | 37.410 | 278 | 153 | 7 | 2 | 275 | 22 | 282 | 1.80e-56 | 183 |
MS.gene006296.t1 | AT2G02310 | 35.507 | 276 | 159 | 4 | 4 | 276 | 45 | 304 | 1.74e-52 | 174 |
MS.gene006296.t1 | AT2G02320 | 37.545 | 277 | 146 | 7 | 6 | 275 | 42 | 298 | 7.20e-49 | 164 |
MS.gene006296.t1 | AT5G24560 | 42.188 | 192 | 98 | 4 | 4 | 192 | 3 | 184 | 1.39e-42 | 144 |
MS.gene006296.t1 | AT2G02300 | 34.875 | 281 | 142 | 9 | 4 | 276 | 34 | 281 | 2.12e-42 | 147 |
MS.gene006296.t1 | AT3G53000 | 28.179 | 291 | 171 | 7 | 3 | 278 | 20 | 287 | 2.18e-30 | 115 |
MS.gene006296.t1 | AT2G02350 | 33.520 | 179 | 101 | 6 | 101 | 275 | 1 | 165 | 2.62e-26 | 102 |
MS.gene006296.t1 | AT1G12710 | 25.517 | 290 | 164 | 7 | 3 | 275 | 27 | 281 | 1.36e-20 | 89.4 |
MS.gene006296.t1 | AT1G63090 | 30.097 | 206 | 125 | 6 | 3 | 192 | 25 | 227 | 1.81e-19 | 86.3 |
MS.gene006296.t1 | AT5G52120 | 24.749 | 299 | 165 | 8 | 1 | 275 | 18 | 280 | 1.13e-18 | 84.3 |
MS.gene006296.t1 | AT3G61060 | 31.915 | 141 | 93 | 2 | 6 | 144 | 27 | 166 | 2.29e-18 | 83.2 |
MS.gene006296.t1 | AT3G61060 | 30.496 | 141 | 96 | 1 | 6 | 144 | 27 | 167 | 1.89e-17 | 80.9 |
MS.gene006296.t1 | AT4G19840 | 29.319 | 191 | 102 | 7 | 89 | 276 | 85 | 245 | 4.54e-15 | 73.6 |
MS.gene006296.t1 | AT1G12710 | 25.581 | 301 | 192 | 8 | 3 | 275 | 27 | 323 | 1.34e-14 | 73.2 |
Find 82 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAGCTGCATACTGAGTATT+TGG | 0.255011 | 1.1:+72484469 | None:intergenic |
TTCTGCCTGCGTTCTACATT+TGG | 0.271945 | 1.1:+72484340 | None:intergenic |
CTTGTATACAAATTGATTGA+TGG | 0.301820 | 1.1:-72484445 | MS.gene006296:CDS |
CTAGATCTCTCGCCATTACT+TGG | 0.320149 | 1.1:-72485389 | MS.gene006296:CDS |
ATGGGAGAGTTCTTCAATTC+AGG | 0.321358 | 1.1:-72484217 | MS.gene006296:CDS |
CATCATCGACGATGCCAAAA+AGG | 0.324659 | 1.1:-72486160 | MS.gene006296:intron |
CGCAGACATGGAAGACTTTA+CGG | 0.338884 | 1.1:-72484316 | MS.gene006296:CDS |
AGCAAATGCTCCTTCCAAAA+AGG | 0.353184 | 1.1:-72486214 | MS.gene006296:CDS |
TAGCACTAAAATTGTCTGTT+TGG | 0.362941 | 1.1:-72484365 | MS.gene006296:CDS |
GATGAGTGTTATCGAGATAA+AGG | 0.385187 | 1.1:-72484173 | MS.gene006296:CDS |
AGACGAAGATTAGCAACTTC+GGG | 0.388577 | 1.1:+72484541 | None:intergenic |
TGAAATGCAGAGCTTTCAAT+TGG | 0.399907 | 1.1:-72485448 | MS.gene006296:intron |
GGACCACTATGCCTGATTCC+AGG | 0.401514 | 1.1:-72485341 | MS.gene006296:intron |
CCGCCGATTCCGATGCCGTC+TGG | 0.403257 | 1.1:-72486290 | MS.gene006296:CDS |
CGGAGTCGTACGAGACAGTA+TGG | 0.407327 | 1.1:+72486359 | None:intergenic |
AAGGGGAATTTCTTTCTTGA+GGG | 0.424911 | 1.1:-72484139 | MS.gene006296:CDS |
AAAATGGCCAACCTGGAATC+AGG | 0.426615 | 1.1:+72485330 | None:intergenic |
TGATGATAGGTCGATCAGAT+AGG | 0.426684 | 1.1:+72486178 | None:intergenic |
TTATCTCGATAACACTCATC+TGG | 0.440534 | 1.1:+72484176 | None:intergenic |
GAGAGTCTGCCGGCGTCAAC+CGG | 0.443486 | 1.1:+72486339 | None:intergenic |
ATTCCAGACGGCATCGGAAT+CGG | 0.451722 | 1.1:+72486287 | None:intergenic |
GTTGCTTAATTGTCTACCTT+AGG | 0.451895 | 1.1:+72484103 | None:intergenic |
CGCAGGCAGAACCGCAGACA+TGG | 0.453913 | 1.1:-72484328 | MS.gene006296:CDS |
ATGATGACCGCTATTGGATC+TGG | 0.457353 | 1.1:-72485362 | MS.gene006296:CDS |
TAGATCTCTCGCCATTACTT+GGG | 0.463262 | 1.1:-72485388 | MS.gene006296:CDS |
TTGGCATCGTCGATGATGAT+AGG | 0.465612 | 1.1:+72486165 | None:intergenic |
CAAGGGGAATTTCTTTCTTG+AGG | 0.468108 | 1.1:-72484140 | MS.gene006296:CDS |
TACAAATTGATTGATGGCTA+TGG | 0.469002 | 1.1:-72484439 | MS.gene006296:CDS |
GGGGTGATGATGACCGCTAT+TGG | 0.473829 | 1.1:-72485368 | MS.gene006296:CDS |
TGAGATGATAGAGTTGATAT+CGG | 0.478686 | 1.1:+72486251 | None:intergenic |
ACAAATTGATTGATGGCTAT+GGG | 0.489453 | 1.1:-72484438 | MS.gene006296:CDS |
CGTCCTTGTGTGAGAAGTGA+TGG | 0.489686 | 1.1:-72484256 | MS.gene006296:CDS |
CTCAAGAAAGAAATTCCCCT+TGG | 0.498320 | 1.1:+72484141 | None:intergenic |
AAGACGAAGATTAGCAACTT+CGG | 0.509597 | 1.1:+72484540 | None:intergenic |
CTTCCTGTGGATTTATCTGT+CGG | 0.516064 | 1.1:-72484406 | MS.gene006296:CDS |
GGCGGCAGAAAGGAAAGTCT+TGG | 0.517109 | 1.1:+72486308 | None:intergenic |
GGGTTTGAAGATTTAGCAGA+AGG | 0.520179 | 1.1:-72486393 | MS.gene006296:CDS |
ATGATAGAGTTGATATCGGA+AGG | 0.534915 | 1.1:+72486255 | None:intergenic |
GGGTGGTTGGAGATTGAGAT+GGG | 0.540728 | 1.1:-72484235 | MS.gene006296:CDS |
CATCGGAATCGGCGGCAGAA+AGG | 0.542303 | 1.1:+72486298 | None:intergenic |
TGGGTGGTTGGAGATTGAGA+TGG | 0.542699 | 1.1:-72484236 | MS.gene006296:CDS |
GTCATCATCACCCCAAGTAA+TGG | 0.545677 | 1.1:+72485377 | None:intergenic |
GTGTGGTGGCTCGAAATTCG+TGG | 0.547967 | 1.1:-72484517 | MS.gene006296:CDS |
TGGGTTTGAGAACCTTCCTG+TGG | 0.549562 | 1.1:-72484419 | MS.gene006296:CDS |
GATGATAGGTCGATCAGATA+GGG | 0.551413 | 1.1:+72486179 | None:intergenic |
TGTGAGAAGTGATGGGTGGT+TGG | 0.556044 | 1.1:-72484248 | MS.gene006296:CDS |
GATTTATCTGTCGGTGTCGA+AGG | 0.557631 | 1.1:-72484397 | MS.gene006296:CDS |
CTAATCTTCGTCTTGTGTGG+TGG | 0.562220 | 1.1:-72484531 | MS.gene006296:CDS |
TTGCTAATCTTCGTCTTGTG+TGG | 0.565369 | 1.1:-72484534 | MS.gene006296:CDS |
AGTGTTATCGAGATAAAGGC+TGG | 0.568289 | 1.1:-72484169 | MS.gene006296:CDS |
GGAAACGACGGAGAGTCTGC+CGG | 0.570360 | 1.1:+72486329 | None:intergenic |
CATACTGTCTCGTACGACTC+CGG | 0.570766 | 1.1:-72486358 | MS.gene006296:CDS |
GAAGGAGCATTTGCTAGAGA+AGG | 0.571483 | 1.1:+72486222 | None:intergenic |
CAACCTGGAATCAGGCATAG+TGG | 0.580151 | 1.1:+72485338 | None:intergenic |
GAAGACTTTACGGTCGTGCG+AGG | 0.580931 | 1.1:-72484306 | MS.gene006296:CDS |
GGGAATAGAAGTGAGGCCTA+AGG | 0.588625 | 1.1:-72484119 | MS.gene006296:CDS |
AGGTTGCATGACAGAGTGGT+AGG | 0.597534 | 1.1:-72484286 | MS.gene006296:CDS |
TTATCTGTCGGTGTCGAAGG+TGG | 0.597798 | 1.1:-72484394 | MS.gene006296:CDS |
CACCCATCACTTCTCACACA+AGG | 0.598274 | 1.1:+72484253 | None:intergenic |
AGATCTCTCGCCATTACTTG+GGG | 0.598827 | 1.1:-72485387 | MS.gene006296:CDS |
ATAAAGGCTGGTGAGACCAA+GGG | 0.599634 | 1.1:-72484157 | MS.gene006296:CDS |
GATAAAGGCTGGTGAGACCA+AGG | 0.599999 | 1.1:-72484158 | MS.gene006296:CDS |
TTCTTGAGGGAATAGAAGTG+AGG | 0.602948 | 1.1:-72484126 | MS.gene006296:CDS |
TGTGGTGGCTCGAAATTCGT+GGG | 0.618223 | 1.1:-72484516 | MS.gene006296:CDS |
CCAGACGGCATCGGAATCGG+CGG | 0.622067 | 1.1:+72486290 | None:intergenic |
GTCCTTGTGTGAGAAGTGAT+GGG | 0.633145 | 1.1:-72484255 | MS.gene006296:CDS |
ACACCGACAGATAAATCCAC+AGG | 0.642651 | 1.1:+72484403 | None:intergenic |
ATACTGAGTATTTGGAGACA+AGG | 0.643026 | 1.1:+72484477 | None:intergenic |
AAAGTGATTCCAGACGGCAT+CGG | 0.647589 | 1.1:+72486281 | None:intergenic |
TAAAGGCTGGTGAGACCAAG+GGG | 0.647680 | 1.1:-72484156 | MS.gene006296:CDS |
TCACTTCTCACACAAGGACG+CGG | 0.648694 | 1.1:+72484259 | None:intergenic |
CGTACGACTCCGGTTGACGC+CGG | 0.649397 | 1.1:-72486348 | MS.gene006296:CDS |
TGGATCCAAATGTAGAACGC+AGG | 0.654508 | 1.1:-72484345 | MS.gene006296:CDS |
AAGGAAAGTCTTGGAAACGA+CGG | 0.661166 | 1.1:+72486317 | None:intergenic |
CGTAAAGTCTTCCATGTCTG+CGG | 0.661378 | 1.1:+72484317 | None:intergenic |
AGGAAGAAAGTGATTCCAGA+CGG | 0.665074 | 1.1:+72486275 | None:intergenic |
TGCGAGGTTGCATGACAGAG+TGG | 0.676261 | 1.1:-72484290 | MS.gene006296:CDS |
CGACAGATAAATCCACAGGA+AGG | 0.695590 | 1.1:+72484407 | None:intergenic |
GACGAAGATTAGCAACTTCG+GGG | 0.697062 | 1.1:+72484542 | None:intergenic |
CTTGTGTGAGAAGTGATGGG+TGG | 0.722396 | 1.1:-72484252 | MS.gene006296:CDS |
TAGTGGTCCAGATCCAATAG+CGG | 0.737188 | 1.1:+72485355 | None:intergenic |
AGTCGTACGAGACAGTATGG+AGG | 0.759429 | 1.1:+72486362 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CATTAGATATATTATTAAAT+AGG | - | chr1.1:72484831-72484850 | MS.gene006296:intron | 10.0% |
!! | GTAATTATTTAAAAAAGAAA+TGG | + | chr1.1:72484750-72484769 | None:intergenic | 10.0% |
!! | GTACATTTATTATTATTATT+AGG | - | chr1.1:72484560-72484579 | MS.gene006296:intron | 10.0% |
!! | AAAAAAAAATTATTAGACAG+TGG | + | chr1.1:72485616-72485635 | None:intergenic | 15.0% |
!! | AATAAAAATGAGTAAATTTG+GGG | + | chr1.1:72485208-72485227 | None:intergenic | 15.0% |
!! | CAATAAAAATGAGTAAATTT+GGG | + | chr1.1:72485209-72485228 | None:intergenic | 15.0% |
!! | GAAATAATTTAGTTATCATT+GGG | - | chr1.1:72485694-72485713 | MS.gene006296:intron | 15.0% |
!! | TGAAATAATTTAGTTATCAT+TGG | - | chr1.1:72485693-72485712 | MS.gene006296:intron | 15.0% |
!! | ATAAAAATGAGTAAATTTGG+GGG | + | chr1.1:72485207-72485226 | None:intergenic | 20.0% |
!! | ATTGATTGCTGTAAAATATA+TGG | - | chr1.1:72484983-72485002 | MS.gene006296:intron | 20.0% |
!! | CCAATAAAAATGAGTAAATT+TGG | + | chr1.1:72485210-72485229 | None:intergenic | 20.0% |
!!! | ACTGATTTTGATTAATTTGT+AGG | + | chr1.1:72484861-72484880 | None:intergenic | 20.0% |
!!! | CCAAATTTACTCATTTTTAT+TGG | - | chr1.1:72485207-72485226 | MS.gene006296:intron | 20.0% |
!!! | CTGATTTTGATTAATTTGTA+GGG | + | chr1.1:72484860-72484879 | None:intergenic | 20.0% |
!!! | GATTTTTTAAATGCTTAGTT+TGG | - | chr1.1:72485007-72485026 | MS.gene006296:intron | 20.0% |
!!! | TATCATCTTCTGAAATATTA+GGG | - | chr1.1:72484385-72484404 | MS.gene006296:CDS | 20.0% |
!!! | TGATTTTGATTAATTTGTAG+GGG | + | chr1.1:72484859-72484878 | None:intergenic | 20.0% |
!!! | TTATCATCTTCTGAAATATT+AGG | - | chr1.1:72484384-72484403 | MS.gene006296:CDS | 20.0% |
! | AGGATTCATAACATCATAAA+TGG | + | chr1.1:72485886-72485905 | None:intergenic | 25.0% |
! | ATTGATTGTTCTTTCATGTT+AGG | - | chr1.1:72484437-72484456 | MS.gene006296:CDS | 25.0% |
! | CTTGTATACAAATTGATTGA+TGG | - | chr1.1:72486062-72486081 | MS.gene006296:intron | 25.0% |
! | GAATTGAGAAAAAGTTGAAA+AGG | + | chr1.1:72485906-72485925 | None:intergenic | 25.0% |
! | TGAGAAGATATAGAAAATAC+AGG | + | chr1.1:72484963-72484982 | None:intergenic | 25.0% |
! | TTGATTGTTCTTTCATGTTA+GGG | - | chr1.1:72484438-72484457 | MS.gene006296:CDS | 25.0% |
! | TTTCAATTGGATAGAAAAAG+TGG | - | chr1.1:72485072-72485091 | MS.gene006296:intron | 25.0% |
!! | AAAGCTAATAATAAGCCTTT+TGG | - | chr1.1:72485030-72485049 | MS.gene006296:intron | 25.0% |
!! | AAGCTAATAATAAGCCTTTT+GGG | - | chr1.1:72485031-72485050 | MS.gene006296:intron | 25.0% |
!! | AATATGTGATGATACCTTTT+TGG | + | chr1.1:72484364-72484383 | None:intergenic | 25.0% |
!! | GTTATTACTCTTTTTGATGA+TGG | - | chr1.1:72485787-72485806 | MS.gene006296:intron | 25.0% |
AATTGTTCATTCCATTTCCT+TGG | - | chr1.1:72485285-72485304 | MS.gene006296:intron | 30.0% | |
AGATGAAAGTTTCCTTAATG+AGG | + | chr1.1:72485352-72485371 | None:intergenic | 30.0% | |
ATACGAAATATCCAAGGAAA+TGG | + | chr1.1:72485299-72485318 | None:intergenic | 30.0% | |
ATGAAAGTTTCCTTAATGAG+GGG | + | chr1.1:72485350-72485369 | None:intergenic | 30.0% | |
GAACAATGTTAAACCAAACA+AGG | + | chr1.1:72485248-72485267 | None:intergenic | 30.0% | |
GATGAAAGTTTCCTTAATGA+GGG | + | chr1.1:72485351-72485370 | None:intergenic | 30.0% | |
TAGCACTAAAATTGTCTGTT+TGG | - | chr1.1:72486142-72486161 | MS.gene006296:intron | 30.0% | |
TCAGCCAATATACATTTACA+GGG | + | chr1.1:72484922-72484941 | None:intergenic | 30.0% | |
TGCATTTCAATATACCCAAA+AGG | + | chr1.1:72485048-72485067 | None:intergenic | 30.0% | |
TTCAGCCAATATACATTTAC+AGG | + | chr1.1:72484923-72484942 | None:intergenic | 30.0% | |
TTGAATATACCCATAGTCTT+TGG | - | chr1.1:72485397-72485416 | MS.gene006296:CDS | 30.0% | |
! | ACAAATTGATTGATGGCTAT+GGG | - | chr1.1:72486069-72486088 | MS.gene006296:intron | 30.0% |
! | TACAAATTGATTGATGGCTA+TGG | - | chr1.1:72486068-72486087 | MS.gene006296:intron | 30.0% |
!! | ACAAGAAGTATTCACTTAGA+AGG | + | chr1.1:72485528-72485547 | None:intergenic | 30.0% |
!! | AGACAATTTTAGTGCTACTA+TGG | + | chr1.1:72486139-72486158 | None:intergenic | 30.0% |
!! | TGAGATGATAGAGTTGATAT+CGG | + | chr1.1:72484259-72484278 | None:intergenic | 30.0% |
!!! | GAGCTGTTTCAAAGTTTTTT+TGG | - | chr1.1:72485749-72485768 | MS.gene006296:intron | 30.0% |
AAAATGAGTAAATTTGGGGG+AGG | + | chr1.1:72485204-72485223 | None:intergenic | 35.0% | |
AACCTCAATAACAGTGATGT+TGG | - | chr1.1:72485589-72485608 | MS.gene006296:intron | 35.0% | |
AAGACGAAGATTAGCAACTT+CGG | + | chr1.1:72485970-72485989 | None:intergenic | 35.0% | |
AAGGGGAATTTCTTTCTTGA+GGG | - | chr1.1:72486368-72486387 | MS.gene006296:CDS | 35.0% | |
AATGAACAATTCACCGAGAA+AGG | + | chr1.1:72485276-72485295 | None:intergenic | 35.0% | |
ACTCAGATACGAAATATCCA+AGG | + | chr1.1:72485305-72485324 | None:intergenic | 35.0% | |
AGAAGAAAAGCCAAAGACTA+TGG | + | chr1.1:72485410-72485429 | None:intergenic | 35.0% | |
ATACTGAGTATTTGGAGACA+AGG | + | chr1.1:72486033-72486052 | None:intergenic | 35.0% | |
CATTGTTCTTTCTCCTTTCT+CGG | - | chr1.1:72485260-72485279 | MS.gene006296:intron | 35.0% | |
CTTTACAAACCAAACCAACA+TGG | + | chr1.1:72484619-72484638 | None:intergenic | 35.0% | |
GAAGAAAAGCCAAAGACTAT+GGG | + | chr1.1:72485409-72485428 | None:intergenic | 35.0% | |
GATGAGTGTTATCGAGATAA+AGG | - | chr1.1:72486334-72486353 | MS.gene006296:CDS | 35.0% | |
GTTAAACCAAACAAGGTAGA+AGG | + | chr1.1:72485241-72485260 | None:intergenic | 35.0% | |
TAAATTTGGGGGAGGAAAAA+TGG | + | chr1.1:72485196-72485215 | None:intergenic | 35.0% | |
TAAGCTGCATACTGAGTATT+TGG | + | chr1.1:72486041-72486060 | None:intergenic | 35.0% | |
TCAGGTGTATGGTTAACTTT+GGG | + | chr1.1:72485564-72485583 | None:intergenic | 35.0% | |
TGAAATGCAGAGCTTTCAAT+TGG | - | chr1.1:72485059-72485078 | MS.gene006296:intron | 35.0% | |
TGTGCCCTGTAAATGTATAT+TGG | - | chr1.1:72484915-72484934 | MS.gene006296:intron | 35.0% | |
TGTTATTGAGGTTCAGATTC+AGG | + | chr1.1:72485582-72485601 | None:intergenic | 35.0% | |
TGTTCATAAGTGTAAGTGCT+AGG | + | chr1.1:72484663-72484682 | None:intergenic | 35.0% | |
TTATCTCGATAACACTCATC+TGG | + | chr1.1:72486334-72486353 | None:intergenic | 35.0% | |
TTCAGGTGTATGGTTAACTT+TGG | + | chr1.1:72485565-72485584 | None:intergenic | 35.0% | |
! | TCTGGACTTCTTCATTTTCA+AGG | + | chr1.1:72486316-72486335 | None:intergenic | 35.0% |
! | TTGAATGTAACCAAGAGTGT+CGG | + | chr1.1:72484722-72484741 | None:intergenic | 35.0% |
!! | ATGATAGAGTTGATATCGGA+AGG | + | chr1.1:72484255-72484274 | None:intergenic | 35.0% |
AAACCAAACAAGGTAGAAGG+TGG | + | chr1.1:72485238-72485257 | None:intergenic | 40.0% | |
AAACCAACATGGTGGTTCAA+CGG | + | chr1.1:72484608-72484627 | None:intergenic | 40.0% | |
AAGGAAAGTCTTGGAAACGA+CGG | + | chr1.1:72484193-72484212 | None:intergenic | 40.0% | |
ACAATTACCGAAAACGTGTC+TGG | - | chr1.1:72484680-72484699 | MS.gene006296:intron | 40.0% | |
AGACGAAGATTAGCAACTTC+GGG | + | chr1.1:72485969-72485988 | None:intergenic | 40.0% | |
AGCAAATGCTCCTTCCAAAA+AGG | - | chr1.1:72484293-72484312 | MS.gene006296:CDS | 40.0% | |
AGGAAGAAAGTGATTCCAGA+CGG | + | chr1.1:72484235-72484254 | None:intergenic | 40.0% | |
AGTGTTATCGAGATAAAGGC+TGG | - | chr1.1:72486338-72486357 | MS.gene006296:CDS | 40.0% | |
ATGGGAGAGTTCTTCAATTC+AGG | - | chr1.1:72486290-72486309 | MS.gene006296:CDS | 40.0% | |
CAAGGGGAATTTCTTTCTTG+AGG | - | chr1.1:72486367-72486386 | MS.gene006296:CDS | 40.0% | |
CTCAAGAAAGAAATTCCCCT+TGG | + | chr1.1:72486369-72486388 | None:intergenic | 40.0% | |
CTTCCTGTGGATTTATCTGT+CGG | - | chr1.1:72486101-72486120 | MS.gene006296:intron | 40.0% | |
GACACACACAAACACAAACA+TGG | + | chr1.1:72484793-72484812 | None:intergenic | 40.0% | |
GACCAACATCACTGTTATTG+AGG | + | chr1.1:72485594-72485613 | None:intergenic | 40.0% | |
GATGATAGGTCGATCAGATA+GGG | + | chr1.1:72484331-72484350 | None:intergenic | 40.0% | |
GGATAGTTACACATTGACAG+CGG | + | chr1.1:72484772-72484791 | None:intergenic | 40.0% | |
GGGTTTGAAGATTTAGCAGA+AGG | - | chr1.1:72484114-72484133 | MS.gene006296:CDS | 40.0% | |
GTTTCCTTAATGAGGGGAAT+AGG | + | chr1.1:72485344-72485363 | None:intergenic | 40.0% | |
TACAAACCAAACCAACATGG+TGG | + | chr1.1:72484616-72484635 | None:intergenic | 40.0% | |
TAGATCTCTCGCCATTACTT+GGG | - | chr1.1:72485119-72485138 | MS.gene006296:intron | 40.0% | |
TGATCCTATTCCCCTCATTA+AGG | - | chr1.1:72485337-72485356 | MS.gene006296:intron | 40.0% | |
TGATGATAGGTCGATCAGAT+AGG | + | chr1.1:72484332-72484351 | None:intergenic | 40.0% | |
TTCTTGAGGGAATAGAAGTG+AGG | - | chr1.1:72486381-72486400 | MS.gene006296:CDS | 40.0% | |
TTGCTAATCTTCGTCTTGTG+TGG | - | chr1.1:72485973-72485992 | MS.gene006296:intron | 40.0% | |
! | AGATAGAGAGCCTTTTTGGA+AGG | + | chr1.1:72484306-72484325 | None:intergenic | 40.0% |
! | CATCTCTGCAACTTTTGTGT+TGG | - | chr1.1:72485935-72485954 | MS.gene006296:intron | 40.0% |
AAAATGGCCAACCTGGAATC+AGG | + | chr1.1:72485180-72485199 | None:intergenic | 45.0% | |
AAAGTGATTCCAGACGGCAT+CGG | + | chr1.1:72484229-72484248 | None:intergenic | 45.0% | |
ACACCGACAGATAAATCCAC+AGG | + | chr1.1:72486107-72486126 | None:intergenic | 45.0% | |
AGATCTCTCGCCATTACTTG+GGG | - | chr1.1:72485120-72485139 | MS.gene006296:intron | 45.0% | |
ATAAAGGCTGGTGAGACCAA+GGG | - | chr1.1:72486350-72486369 | MS.gene006296:CDS | 45.0% | |
ATGATGACCGCTATTGGATC+TGG | - | chr1.1:72485145-72485164 | MS.gene006296:intron | 45.0% | |
ATGGTGGTTCAACGGAACAA+CGG | + | chr1.1:72484600-72484619 | None:intergenic | 45.0% | |
CATCATCGACGATGCCAAAA+AGG | - | chr1.1:72484347-72484366 | MS.gene006296:CDS | 45.0% | |
CGACAGATAAATCCACAGGA+AGG | + | chr1.1:72486103-72486122 | None:intergenic | 45.0% | |
CGCAGACATGGAAGACTTTA+CGG | - | chr1.1:72486191-72486210 | MS.gene006296:CDS | 45.0% | |
CGTAAAGTCTTCCATGTCTG+CGG | + | chr1.1:72486193-72486212 | None:intergenic | 45.0% | |
CTAATCTTCGTCTTGTGTGG+TGG | - | chr1.1:72485976-72485995 | MS.gene006296:intron | 45.0% | |
CTAGATCTCTCGCCATTACT+TGG | - | chr1.1:72485118-72485137 | MS.gene006296:intron | 45.0% | |
GACGAAGATTAGCAACTTCG+GGG | + | chr1.1:72485968-72485987 | None:intergenic | 45.0% | |
GAGGTTCAGATTCAGGTGTA+TGG | + | chr1.1:72485575-72485594 | None:intergenic | 45.0% | |
GCAAGATGAACGACAATGAG+AGG | - | chr1.1:72485374-72485393 | MS.gene006296:CDS | 45.0% | |
GTCATCATCACCCCAAGTAA+TGG | + | chr1.1:72485133-72485152 | None:intergenic | 45.0% | |
GTCCTTGTGTGAGAAGTGAT+GGG | - | chr1.1:72486252-72486271 | MS.gene006296:CDS | 45.0% | |
GTGTTTGTGTGTGTCTGTGT+CGG | - | chr1.1:72484798-72484817 | MS.gene006296:intron | 45.0% | |
TAGTGGTCCAGATCCAATAG+CGG | + | chr1.1:72485155-72485174 | None:intergenic | 45.0% | |
TCTCCACCTTCTACCTTGTT+TGG | - | chr1.1:72485232-72485251 | MS.gene006296:intron | 45.0% | |
TGGATCCAAATGTAGAACGC+AGG | - | chr1.1:72486162-72486181 | MS.gene006296:CDS | 45.0% | |
TTCTGCCTGCGTTCTACATT+TGG | + | chr1.1:72486170-72486189 | None:intergenic | 45.0% | |
TTGGCATCGTCGATGATGAT+AGG | + | chr1.1:72484345-72484364 | None:intergenic | 45.0% | |
! | CTGCAACTTTTGTGTTGGAC+AGG | - | chr1.1:72485940-72485959 | MS.gene006296:intron | 45.0% |
! | GGCAAGATAGAGAGCCTTTT+TGG | + | chr1.1:72484310-72484329 | None:intergenic | 45.0% |
! | GTTGAACCACCATGTTGGTT+TGG | - | chr1.1:72484607-72484626 | MS.gene006296:intron | 45.0% |
!! | GAAGGAGCATTTGCTAGAGA+AGG | + | chr1.1:72484288-72484307 | None:intergenic | 45.0% |
!! | GATTTATCTGTCGGTGTCGA+AGG | - | chr1.1:72486110-72486129 | MS.gene006296:intron | 45.0% |
!! | TACATTTATTATTATTATTA+GGG | - | chr1.1:72484561-72484580 | MS.gene006296:intron | 5.0% |
ACTGTTGTCACCGACACTCT+TGG | - | chr1.1:72484709-72484728 | MS.gene006296:intron | 50.0% | |
AGGTTGCATGACAGAGTGGT+AGG | - | chr1.1:72486221-72486240 | MS.gene006296:CDS | 50.0% | |
AGTCGTACGAGACAGTATGG+AGG | + | chr1.1:72484148-72484167 | None:intergenic | 50.0% | |
CAACCTGGAATCAGGCATAG+TGG | + | chr1.1:72485172-72485191 | None:intergenic | 50.0% | |
CACCCATCACTTCTCACACA+AGG | + | chr1.1:72486257-72486276 | None:intergenic | 50.0% | |
CACTATGCCTGATTCCAGGT+TGG | - | chr1.1:72485170-72485189 | MS.gene006296:intron | 50.0% | |
CATACTGTCTCGTACGACTC+CGG | - | chr1.1:72484149-72484168 | MS.gene006296:CDS | 50.0% | |
CGTCCTTGTGTGAGAAGTGA+TGG | - | chr1.1:72486251-72486270 | MS.gene006296:CDS | 50.0% | |
GATAAAGGCTGGTGAGACCA+AGG | - | chr1.1:72486349-72486368 | MS.gene006296:CDS | 50.0% | |
GGGAATAGAAGTGAGGCCTA+AGG | - | chr1.1:72486388-72486407 | MS.gene006296:CDS | 50.0% | |
GGGTGGTTGGAGATTGAGAT+GGG | - | chr1.1:72486272-72486291 | MS.gene006296:CDS | 50.0% | |
GTTCCGTTGAACCACCATGT+TGG | - | chr1.1:72484602-72484621 | MS.gene006296:intron | 50.0% | |
TAAAGGCTGGTGAGACCAAG+GGG | - | chr1.1:72486351-72486370 | MS.gene006296:CDS | 50.0% | |
TCACTTCTCACACAAGGACG+CGG | + | chr1.1:72486251-72486270 | None:intergenic | 50.0% | |
TGGGTGGTTGGAGATTGAGA+TGG | - | chr1.1:72486271-72486290 | MS.gene006296:CDS | 50.0% | |
TGGGTTTGAGAACCTTCCTG+TGG | - | chr1.1:72486088-72486107 | MS.gene006296:intron | 50.0% | |
TGTGGTGGCTCGAAATTCGT+GGG | - | chr1.1:72485991-72486010 | MS.gene006296:intron | 50.0% | |
! | ATTCCAGACGGCATCGGAAT+CGG | + | chr1.1:72484223-72484242 | None:intergenic | 50.0% |
! | CTTGTGTGAGAAGTGATGGG+TGG | - | chr1.1:72486255-72486274 | MS.gene006296:CDS | 50.0% |
! | TCGGACACCAGACACGTTTT+CGG | + | chr1.1:72484690-72484709 | None:intergenic | 50.0% |
!! | AGAGTGTCGGTGACAACAGT+CGG | + | chr1.1:72484709-72484728 | None:intergenic | 50.0% |
!! | TGTGAGAAGTGATGGGTGGT+TGG | - | chr1.1:72486259-72486278 | MS.gene006296:CDS | 50.0% |
!! | TTATCTGTCGGTGTCGAAGG+TGG | - | chr1.1:72486113-72486132 | MS.gene006296:intron | 50.0% |
CGGAGTCGTACGAGACAGTA+TGG | + | chr1.1:72484151-72484170 | None:intergenic | 55.0% | |
GAAGACTTTACGGTCGTGCG+AGG | - | chr1.1:72486201-72486220 | MS.gene006296:CDS | 55.0% | |
GGACCACTATGCCTGATTCC+AGG | - | chr1.1:72485166-72485185 | MS.gene006296:intron | 55.0% | |
GGCGGCAGAAAGGAAAGTCT+TGG | + | chr1.1:72484202-72484221 | None:intergenic | 55.0% | |
GGGAGGAAAAATGGCCAACC+TGG | + | chr1.1:72485187-72485206 | None:intergenic | 55.0% | |
GTGTGGTGGCTCGAAATTCG+TGG | - | chr1.1:72485990-72486009 | MS.gene006296:intron | 55.0% | |
TGCGAGGTTGCATGACAGAG+TGG | - | chr1.1:72486217-72486236 | MS.gene006296:CDS | 55.0% | |
! | GGGGTGATGATGACCGCTAT+TGG | - | chr1.1:72485139-72485158 | MS.gene006296:intron | 55.0% |
CATCGGAATCGGCGGCAGAA+AGG | + | chr1.1:72484212-72484231 | None:intergenic | 60.0% | |
GGAAACGACGGAGAGTCTGC+CGG | + | chr1.1:72484181-72484200 | None:intergenic | 60.0% | |
CGCAGGCAGAACCGCAGACA+TGG | - | chr1.1:72486179-72486198 | MS.gene006296:CDS | 65.0% | |
CGTACGACTCCGGTTGACGC+CGG | - | chr1.1:72484159-72484178 | MS.gene006296:CDS | 65.0% | |
GAGAGTCTGCCGGCGTCAAC+CGG | + | chr1.1:72484171-72484190 | None:intergenic | 65.0% | |
! | CCAGACGGCATCGGAATCGG+CGG | + | chr1.1:72484220-72484239 | None:intergenic | 65.0% |
!! | CCGCCGATTCCGATGCCGTC+TGG | - | chr1.1:72484217-72484236 | MS.gene006296:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 72484108 | 72486421 | 72484108 | ID=MS.gene006296 |
chr1.1 | mRNA | 72484108 | 72486421 | 72484108 | ID=MS.gene006296.t1;Parent=MS.gene006296 |
chr1.1 | exon | 72486161 | 72486421 | 72486161 | ID=MS.gene006296.t1.exon1;Parent=MS.gene006296.t1 |
chr1.1 | CDS | 72486161 | 72486421 | 72486161 | ID=cds.MS.gene006296.t1;Parent=MS.gene006296.t1 |
chr1.1 | exon | 72485342 | 72485460 | 72485342 | ID=MS.gene006296.t1.exon2;Parent=MS.gene006296.t1 |
chr1.1 | CDS | 72485342 | 72485460 | 72485342 | ID=cds.MS.gene006296.t1;Parent=MS.gene006296.t1 |
chr1.1 | exon | 72484108 | 72484567 | 72484108 | ID=MS.gene006296.t1.exon3;Parent=MS.gene006296.t1 |
chr1.1 | CDS | 72484108 | 72484567 | 72484108 | ID=cds.MS.gene006296.t1;Parent=MS.gene006296.t1 |
Gene Sequence |
Protein sequence |