AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006296


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006296.t1 MTR_1g100597 94.265 279 12 2 1 279 1 275 0.0 533
MS.gene006296.t1 MTR_1g079370 73.188 276 63 1 1 276 1 265 3.86e-146 410
MS.gene006296.t1 MTR_1g079180 73.835 279 56 4 1 276 1 265 3.33e-143 403
MS.gene006296.t1 MTR_1g079260 70.423 284 70 3 1 279 1 275 1.78e-141 399
MS.gene006296.t1 MTR_1g079230 69.643 280 80 2 1 279 1 276 4.93e-140 395
MS.gene006296.t1 MTR_1g100613 80.000 240 48 0 20 259 5 244 8.41e-137 386
MS.gene006296.t1 MTR_1g079460 69.149 282 71 2 1 279 1 269 1.23e-136 386
MS.gene006296.t1 MTR_1g079200 70.463 281 61 4 1 276 1 264 2.00e-134 380
MS.gene006296.t1 MTR_1g079380 71.942 278 67 1 1 278 1 267 1.27e-133 380
MS.gene006296.t1 MTR_1g079850 68.662 284 84 3 1 279 1 284 3.27e-131 373
MS.gene006296.t1 MTR_3g006850 64.262 305 79 5 3 279 16 318 2.44e-123 355
MS.gene006296.t1 MTR_1g079250 65.385 286 87 6 1 279 1 281 1.08e-113 329
MS.gene006296.t1 MTR_1g026510 61.168 291 96 7 1 279 1 286 1.79e-112 327
MS.gene006296.t1 MTR_3g452600 61.594 276 91 2 4 279 10 270 6.77e-112 324
MS.gene006296.t1 MTR_3g450990 55.442 294 96 4 4 279 10 286 1.41e-99 293
MS.gene006296.t1 MTR_1g079410 55.396 278 105 4 5 276 9 273 5.20e-99 291
MS.gene006296.t1 MTR_2g079100 58.608 273 92 4 3 273 8 261 6.46e-98 288
MS.gene006296.t1 MTR_1g079350 54.007 287 109 6 1 276 1 275 5.18e-93 276
MS.gene006296.t1 MTR_1g079340 52.667 300 104 8 1 276 40 325 8.48e-85 257
MS.gene006296.t1 MTR_1g079140 47.508 301 129 6 4 279 13 309 7.78e-84 254
MS.gene006296.t1 MTR_7g096300 58.397 262 83 5 1 256 1 242 1.54e-83 266
MS.gene006296.t1 MTR_1g079400 47.872 282 122 3 5 276 13 279 1.59e-80 244
MS.gene006296.t1 MTR_1g078470 60.104 193 61 3 84 276 8 184 8.70e-74 224
MS.gene006296.t1 MTR_7g112550 44.291 289 137 10 2 276 5 283 1.56e-69 216
MS.gene006296.t1 MTR_1g083580 40.860 279 158 5 2 276 6 281 5.60e-65 205
MS.gene006296.t1 MTR_7g112560 39.711 277 145 7 4 277 1 258 3.39e-62 197
MS.gene006296.t1 MTR_1g079240 57.368 190 59 4 87 276 12 179 3.08e-61 192
MS.gene006296.t1 MTR_1g076870 70.149 134 35 2 128 256 2 135 1.89e-59 186
MS.gene006296.t1 MTR_4g023570 37.319 276 131 7 4 276 1 237 3.85e-52 171
MS.gene006296.t1 MTR_1g079210 66.667 123 40 1 129 250 7 129 6.11e-46 151
MS.gene006296.t1 MTR_1g079130 44.444 189 92 2 101 276 1 189 1.54e-44 149
MS.gene006296.t1 MTR_1g079350 59.854 137 42 3 1 128 1 133 1.08e-43 148
MS.gene006296.t1 MTR_2g042540 64.762 105 35 2 1 103 1 105 9.89e-37 127
MS.gene006296.t1 MTR_1g078460 71.264 87 25 0 1 87 64 150 5.16e-36 126
MS.gene006296.t1 MTR_7g096310 56.061 132 50 3 57 186 38 163 3.38e-35 124
MS.gene006296.t1 MTR_3g058640 54.867 113 38 1 128 240 7 106 3.95e-34 120
MS.gene006296.t1 MTR_7g103380 26.316 285 173 5 6 275 21 283 7.45e-30 114
MS.gene006296.t1 MTR_0113s0040 30.846 201 124 3 2 188 20 219 4.01e-24 99.0
MS.gene006296.t1 MTR_1g101390 38.621 145 86 2 2 144 26 169 4.53e-23 96.3
MS.gene006296.t1 MTR_1g079220 60.759 79 18 1 165 243 1 66 1.09e-22 89.4
MS.gene006296.t1 MTR_4g083970 26.818 220 126 4 63 277 102 291 1.60e-20 89.4
MS.gene006296.t1 MTR_0002s0020 30.539 167 106 3 6 165 24 187 1.53e-18 83.6
MS.gene006296.t1 MTR_4g102770 33.333 144 92 2 6 146 21 163 3.96e-18 82.4
MS.gene006296.t1 MTR_5g010800 30.137 146 95 4 6 147 19 161 4.47e-16 76.6
MS.gene006296.t1 MTR_1g079390 72.000 50 12 2 222 271 8 55 3.74e-15 68.6
MS.gene006296.t1 MTR_1g079190 73.171 41 11 0 228 268 134 174 2.34e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006296.t1 AT2G02360 42.909 275 134 5 4 275 14 268 3.06e-74 228
MS.gene006296.t1 AT1G80110 43.542 271 134 6 6 275 3 255 1.22e-67 211
MS.gene006296.t1 AT2G02240 42.336 274 138 5 4 275 61 316 2.02e-64 204
MS.gene006296.t1 AT2G02340 42.446 278 142 5 4 275 36 301 3.58e-64 204
MS.gene006296.t1 AT2G02230 37.540 309 156 7 4 279 32 336 2.44e-63 202
MS.gene006296.t1 AT2G02250 41.667 276 138 8 4 275 47 303 3.44e-63 201
MS.gene006296.t1 AT1G09155 41.935 279 152 6 7 276 3 280 3.94e-63 200
MS.gene006296.t1 AT1G56250 41.429 280 154 5 7 277 4 282 7.15e-61 194
MS.gene006296.t1 AT1G56240 41.007 278 154 5 7 275 4 280 2.54e-59 190
MS.gene006296.t1 AT2G02350 37.410 278 153 7 2 275 22 282 1.80e-56 183
MS.gene006296.t1 AT2G02310 35.507 276 159 4 4 276 45 304 1.74e-52 174
MS.gene006296.t1 AT2G02320 37.545 277 146 7 6 275 42 298 7.20e-49 164
MS.gene006296.t1 AT5G24560 42.188 192 98 4 4 192 3 184 1.39e-42 144
MS.gene006296.t1 AT2G02300 34.875 281 142 9 4 276 34 281 2.12e-42 147
MS.gene006296.t1 AT3G53000 28.179 291 171 7 3 278 20 287 2.18e-30 115
MS.gene006296.t1 AT2G02350 33.520 179 101 6 101 275 1 165 2.62e-26 102
MS.gene006296.t1 AT1G12710 25.517 290 164 7 3 275 27 281 1.36e-20 89.4
MS.gene006296.t1 AT1G63090 30.097 206 125 6 3 192 25 227 1.81e-19 86.3
MS.gene006296.t1 AT5G52120 24.749 299 165 8 1 275 18 280 1.13e-18 84.3
MS.gene006296.t1 AT3G61060 31.915 141 93 2 6 144 27 166 2.29e-18 83.2
MS.gene006296.t1 AT3G61060 30.496 141 96 1 6 144 27 167 1.89e-17 80.9
MS.gene006296.t1 AT4G19840 29.319 191 102 7 89 276 85 245 4.54e-15 73.6
MS.gene006296.t1 AT1G12710 25.581 301 192 8 3 275 27 323 1.34e-14 73.2

Find 82 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCTGCATACTGAGTATT+TGG 0.255011 1.1:+72484469 None:intergenic
TTCTGCCTGCGTTCTACATT+TGG 0.271945 1.1:+72484340 None:intergenic
CTTGTATACAAATTGATTGA+TGG 0.301820 1.1:-72484445 MS.gene006296:CDS
CTAGATCTCTCGCCATTACT+TGG 0.320149 1.1:-72485389 MS.gene006296:CDS
ATGGGAGAGTTCTTCAATTC+AGG 0.321358 1.1:-72484217 MS.gene006296:CDS
CATCATCGACGATGCCAAAA+AGG 0.324659 1.1:-72486160 MS.gene006296:intron
CGCAGACATGGAAGACTTTA+CGG 0.338884 1.1:-72484316 MS.gene006296:CDS
AGCAAATGCTCCTTCCAAAA+AGG 0.353184 1.1:-72486214 MS.gene006296:CDS
TAGCACTAAAATTGTCTGTT+TGG 0.362941 1.1:-72484365 MS.gene006296:CDS
GATGAGTGTTATCGAGATAA+AGG 0.385187 1.1:-72484173 MS.gene006296:CDS
AGACGAAGATTAGCAACTTC+GGG 0.388577 1.1:+72484541 None:intergenic
TGAAATGCAGAGCTTTCAAT+TGG 0.399907 1.1:-72485448 MS.gene006296:intron
GGACCACTATGCCTGATTCC+AGG 0.401514 1.1:-72485341 MS.gene006296:intron
CCGCCGATTCCGATGCCGTC+TGG 0.403257 1.1:-72486290 MS.gene006296:CDS
CGGAGTCGTACGAGACAGTA+TGG 0.407327 1.1:+72486359 None:intergenic
AAGGGGAATTTCTTTCTTGA+GGG 0.424911 1.1:-72484139 MS.gene006296:CDS
AAAATGGCCAACCTGGAATC+AGG 0.426615 1.1:+72485330 None:intergenic
TGATGATAGGTCGATCAGAT+AGG 0.426684 1.1:+72486178 None:intergenic
TTATCTCGATAACACTCATC+TGG 0.440534 1.1:+72484176 None:intergenic
GAGAGTCTGCCGGCGTCAAC+CGG 0.443486 1.1:+72486339 None:intergenic
ATTCCAGACGGCATCGGAAT+CGG 0.451722 1.1:+72486287 None:intergenic
GTTGCTTAATTGTCTACCTT+AGG 0.451895 1.1:+72484103 None:intergenic
CGCAGGCAGAACCGCAGACA+TGG 0.453913 1.1:-72484328 MS.gene006296:CDS
ATGATGACCGCTATTGGATC+TGG 0.457353 1.1:-72485362 MS.gene006296:CDS
TAGATCTCTCGCCATTACTT+GGG 0.463262 1.1:-72485388 MS.gene006296:CDS
TTGGCATCGTCGATGATGAT+AGG 0.465612 1.1:+72486165 None:intergenic
CAAGGGGAATTTCTTTCTTG+AGG 0.468108 1.1:-72484140 MS.gene006296:CDS
TACAAATTGATTGATGGCTA+TGG 0.469002 1.1:-72484439 MS.gene006296:CDS
GGGGTGATGATGACCGCTAT+TGG 0.473829 1.1:-72485368 MS.gene006296:CDS
TGAGATGATAGAGTTGATAT+CGG 0.478686 1.1:+72486251 None:intergenic
ACAAATTGATTGATGGCTAT+GGG 0.489453 1.1:-72484438 MS.gene006296:CDS
CGTCCTTGTGTGAGAAGTGA+TGG 0.489686 1.1:-72484256 MS.gene006296:CDS
CTCAAGAAAGAAATTCCCCT+TGG 0.498320 1.1:+72484141 None:intergenic
AAGACGAAGATTAGCAACTT+CGG 0.509597 1.1:+72484540 None:intergenic
CTTCCTGTGGATTTATCTGT+CGG 0.516064 1.1:-72484406 MS.gene006296:CDS
GGCGGCAGAAAGGAAAGTCT+TGG 0.517109 1.1:+72486308 None:intergenic
GGGTTTGAAGATTTAGCAGA+AGG 0.520179 1.1:-72486393 MS.gene006296:CDS
ATGATAGAGTTGATATCGGA+AGG 0.534915 1.1:+72486255 None:intergenic
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 1.1:-72484235 MS.gene006296:CDS
CATCGGAATCGGCGGCAGAA+AGG 0.542303 1.1:+72486298 None:intergenic
TGGGTGGTTGGAGATTGAGA+TGG 0.542699 1.1:-72484236 MS.gene006296:CDS
GTCATCATCACCCCAAGTAA+TGG 0.545677 1.1:+72485377 None:intergenic
GTGTGGTGGCTCGAAATTCG+TGG 0.547967 1.1:-72484517 MS.gene006296:CDS
TGGGTTTGAGAACCTTCCTG+TGG 0.549562 1.1:-72484419 MS.gene006296:CDS
GATGATAGGTCGATCAGATA+GGG 0.551413 1.1:+72486179 None:intergenic
TGTGAGAAGTGATGGGTGGT+TGG 0.556044 1.1:-72484248 MS.gene006296:CDS
GATTTATCTGTCGGTGTCGA+AGG 0.557631 1.1:-72484397 MS.gene006296:CDS
CTAATCTTCGTCTTGTGTGG+TGG 0.562220 1.1:-72484531 MS.gene006296:CDS
TTGCTAATCTTCGTCTTGTG+TGG 0.565369 1.1:-72484534 MS.gene006296:CDS
AGTGTTATCGAGATAAAGGC+TGG 0.568289 1.1:-72484169 MS.gene006296:CDS
GGAAACGACGGAGAGTCTGC+CGG 0.570360 1.1:+72486329 None:intergenic
CATACTGTCTCGTACGACTC+CGG 0.570766 1.1:-72486358 MS.gene006296:CDS
GAAGGAGCATTTGCTAGAGA+AGG 0.571483 1.1:+72486222 None:intergenic
CAACCTGGAATCAGGCATAG+TGG 0.580151 1.1:+72485338 None:intergenic
GAAGACTTTACGGTCGTGCG+AGG 0.580931 1.1:-72484306 MS.gene006296:CDS
GGGAATAGAAGTGAGGCCTA+AGG 0.588625 1.1:-72484119 MS.gene006296:CDS
AGGTTGCATGACAGAGTGGT+AGG 0.597534 1.1:-72484286 MS.gene006296:CDS
TTATCTGTCGGTGTCGAAGG+TGG 0.597798 1.1:-72484394 MS.gene006296:CDS
CACCCATCACTTCTCACACA+AGG 0.598274 1.1:+72484253 None:intergenic
AGATCTCTCGCCATTACTTG+GGG 0.598827 1.1:-72485387 MS.gene006296:CDS
ATAAAGGCTGGTGAGACCAA+GGG 0.599634 1.1:-72484157 MS.gene006296:CDS
GATAAAGGCTGGTGAGACCA+AGG 0.599999 1.1:-72484158 MS.gene006296:CDS
TTCTTGAGGGAATAGAAGTG+AGG 0.602948 1.1:-72484126 MS.gene006296:CDS
TGTGGTGGCTCGAAATTCGT+GGG 0.618223 1.1:-72484516 MS.gene006296:CDS
CCAGACGGCATCGGAATCGG+CGG 0.622067 1.1:+72486290 None:intergenic
GTCCTTGTGTGAGAAGTGAT+GGG 0.633145 1.1:-72484255 MS.gene006296:CDS
ACACCGACAGATAAATCCAC+AGG 0.642651 1.1:+72484403 None:intergenic
ATACTGAGTATTTGGAGACA+AGG 0.643026 1.1:+72484477 None:intergenic
AAAGTGATTCCAGACGGCAT+CGG 0.647589 1.1:+72486281 None:intergenic
TAAAGGCTGGTGAGACCAAG+GGG 0.647680 1.1:-72484156 MS.gene006296:CDS
TCACTTCTCACACAAGGACG+CGG 0.648694 1.1:+72484259 None:intergenic
CGTACGACTCCGGTTGACGC+CGG 0.649397 1.1:-72486348 MS.gene006296:CDS
TGGATCCAAATGTAGAACGC+AGG 0.654508 1.1:-72484345 MS.gene006296:CDS
AAGGAAAGTCTTGGAAACGA+CGG 0.661166 1.1:+72486317 None:intergenic
CGTAAAGTCTTCCATGTCTG+CGG 0.661378 1.1:+72484317 None:intergenic
AGGAAGAAAGTGATTCCAGA+CGG 0.665074 1.1:+72486275 None:intergenic
TGCGAGGTTGCATGACAGAG+TGG 0.676261 1.1:-72484290 MS.gene006296:CDS
CGACAGATAAATCCACAGGA+AGG 0.695590 1.1:+72484407 None:intergenic
GACGAAGATTAGCAACTTCG+GGG 0.697062 1.1:+72484542 None:intergenic
CTTGTGTGAGAAGTGATGGG+TGG 0.722396 1.1:-72484252 MS.gene006296:CDS
TAGTGGTCCAGATCCAATAG+CGG 0.737188 1.1:+72485355 None:intergenic
AGTCGTACGAGACAGTATGG+AGG 0.759429 1.1:+72486362 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTAGATATATTATTAAAT+AGG - chr1.1:72484831-72484850 MS.gene006296:intron 10.0%
!! GTAATTATTTAAAAAAGAAA+TGG + chr1.1:72484750-72484769 None:intergenic 10.0%
!! GTACATTTATTATTATTATT+AGG - chr1.1:72484560-72484579 MS.gene006296:intron 10.0%
!! AAAAAAAAATTATTAGACAG+TGG + chr1.1:72485616-72485635 None:intergenic 15.0%
!! AATAAAAATGAGTAAATTTG+GGG + chr1.1:72485208-72485227 None:intergenic 15.0%
!! CAATAAAAATGAGTAAATTT+GGG + chr1.1:72485209-72485228 None:intergenic 15.0%
!! GAAATAATTTAGTTATCATT+GGG - chr1.1:72485694-72485713 MS.gene006296:intron 15.0%
!! TGAAATAATTTAGTTATCAT+TGG - chr1.1:72485693-72485712 MS.gene006296:intron 15.0%
!! ATAAAAATGAGTAAATTTGG+GGG + chr1.1:72485207-72485226 None:intergenic 20.0%
!! ATTGATTGCTGTAAAATATA+TGG - chr1.1:72484983-72485002 MS.gene006296:intron 20.0%
!! CCAATAAAAATGAGTAAATT+TGG + chr1.1:72485210-72485229 None:intergenic 20.0%
!!! ACTGATTTTGATTAATTTGT+AGG + chr1.1:72484861-72484880 None:intergenic 20.0%
!!! CCAAATTTACTCATTTTTAT+TGG - chr1.1:72485207-72485226 MS.gene006296:intron 20.0%
!!! CTGATTTTGATTAATTTGTA+GGG + chr1.1:72484860-72484879 None:intergenic 20.0%
!!! GATTTTTTAAATGCTTAGTT+TGG - chr1.1:72485007-72485026 MS.gene006296:intron 20.0%
!!! TATCATCTTCTGAAATATTA+GGG - chr1.1:72484385-72484404 MS.gene006296:CDS 20.0%
!!! TGATTTTGATTAATTTGTAG+GGG + chr1.1:72484859-72484878 None:intergenic 20.0%
!!! TTATCATCTTCTGAAATATT+AGG - chr1.1:72484384-72484403 MS.gene006296:CDS 20.0%
! AGGATTCATAACATCATAAA+TGG + chr1.1:72485886-72485905 None:intergenic 25.0%
! ATTGATTGTTCTTTCATGTT+AGG - chr1.1:72484437-72484456 MS.gene006296:CDS 25.0%
! CTTGTATACAAATTGATTGA+TGG - chr1.1:72486062-72486081 MS.gene006296:intron 25.0%
! GAATTGAGAAAAAGTTGAAA+AGG + chr1.1:72485906-72485925 None:intergenic 25.0%
! TGAGAAGATATAGAAAATAC+AGG + chr1.1:72484963-72484982 None:intergenic 25.0%
! TTGATTGTTCTTTCATGTTA+GGG - chr1.1:72484438-72484457 MS.gene006296:CDS 25.0%
! TTTCAATTGGATAGAAAAAG+TGG - chr1.1:72485072-72485091 MS.gene006296:intron 25.0%
!! AAAGCTAATAATAAGCCTTT+TGG - chr1.1:72485030-72485049 MS.gene006296:intron 25.0%
!! AAGCTAATAATAAGCCTTTT+GGG - chr1.1:72485031-72485050 MS.gene006296:intron 25.0%
!! AATATGTGATGATACCTTTT+TGG + chr1.1:72484364-72484383 None:intergenic 25.0%
!! GTTATTACTCTTTTTGATGA+TGG - chr1.1:72485787-72485806 MS.gene006296:intron 25.0%
AATTGTTCATTCCATTTCCT+TGG - chr1.1:72485285-72485304 MS.gene006296:intron 30.0%
AGATGAAAGTTTCCTTAATG+AGG + chr1.1:72485352-72485371 None:intergenic 30.0%
ATACGAAATATCCAAGGAAA+TGG + chr1.1:72485299-72485318 None:intergenic 30.0%
ATGAAAGTTTCCTTAATGAG+GGG + chr1.1:72485350-72485369 None:intergenic 30.0%
GAACAATGTTAAACCAAACA+AGG + chr1.1:72485248-72485267 None:intergenic 30.0%
GATGAAAGTTTCCTTAATGA+GGG + chr1.1:72485351-72485370 None:intergenic 30.0%
TAGCACTAAAATTGTCTGTT+TGG - chr1.1:72486142-72486161 MS.gene006296:intron 30.0%
TCAGCCAATATACATTTACA+GGG + chr1.1:72484922-72484941 None:intergenic 30.0%
TGCATTTCAATATACCCAAA+AGG + chr1.1:72485048-72485067 None:intergenic 30.0%
TTCAGCCAATATACATTTAC+AGG + chr1.1:72484923-72484942 None:intergenic 30.0%
TTGAATATACCCATAGTCTT+TGG - chr1.1:72485397-72485416 MS.gene006296:CDS 30.0%
! ACAAATTGATTGATGGCTAT+GGG - chr1.1:72486069-72486088 MS.gene006296:intron 30.0%
! TACAAATTGATTGATGGCTA+TGG - chr1.1:72486068-72486087 MS.gene006296:intron 30.0%
!! ACAAGAAGTATTCACTTAGA+AGG + chr1.1:72485528-72485547 None:intergenic 30.0%
!! AGACAATTTTAGTGCTACTA+TGG + chr1.1:72486139-72486158 None:intergenic 30.0%
!! TGAGATGATAGAGTTGATAT+CGG + chr1.1:72484259-72484278 None:intergenic 30.0%
!!! GAGCTGTTTCAAAGTTTTTT+TGG - chr1.1:72485749-72485768 MS.gene006296:intron 30.0%
AAAATGAGTAAATTTGGGGG+AGG + chr1.1:72485204-72485223 None:intergenic 35.0%
AACCTCAATAACAGTGATGT+TGG - chr1.1:72485589-72485608 MS.gene006296:intron 35.0%
AAGACGAAGATTAGCAACTT+CGG + chr1.1:72485970-72485989 None:intergenic 35.0%
AAGGGGAATTTCTTTCTTGA+GGG - chr1.1:72486368-72486387 MS.gene006296:CDS 35.0%
AATGAACAATTCACCGAGAA+AGG + chr1.1:72485276-72485295 None:intergenic 35.0%
ACTCAGATACGAAATATCCA+AGG + chr1.1:72485305-72485324 None:intergenic 35.0%
AGAAGAAAAGCCAAAGACTA+TGG + chr1.1:72485410-72485429 None:intergenic 35.0%
ATACTGAGTATTTGGAGACA+AGG + chr1.1:72486033-72486052 None:intergenic 35.0%
CATTGTTCTTTCTCCTTTCT+CGG - chr1.1:72485260-72485279 MS.gene006296:intron 35.0%
CTTTACAAACCAAACCAACA+TGG + chr1.1:72484619-72484638 None:intergenic 35.0%
GAAGAAAAGCCAAAGACTAT+GGG + chr1.1:72485409-72485428 None:intergenic 35.0%
GATGAGTGTTATCGAGATAA+AGG - chr1.1:72486334-72486353 MS.gene006296:CDS 35.0%
GTTAAACCAAACAAGGTAGA+AGG + chr1.1:72485241-72485260 None:intergenic 35.0%
TAAATTTGGGGGAGGAAAAA+TGG + chr1.1:72485196-72485215 None:intergenic 35.0%
TAAGCTGCATACTGAGTATT+TGG + chr1.1:72486041-72486060 None:intergenic 35.0%
TCAGGTGTATGGTTAACTTT+GGG + chr1.1:72485564-72485583 None:intergenic 35.0%
TGAAATGCAGAGCTTTCAAT+TGG - chr1.1:72485059-72485078 MS.gene006296:intron 35.0%
TGTGCCCTGTAAATGTATAT+TGG - chr1.1:72484915-72484934 MS.gene006296:intron 35.0%
TGTTATTGAGGTTCAGATTC+AGG + chr1.1:72485582-72485601 None:intergenic 35.0%
TGTTCATAAGTGTAAGTGCT+AGG + chr1.1:72484663-72484682 None:intergenic 35.0%
TTATCTCGATAACACTCATC+TGG + chr1.1:72486334-72486353 None:intergenic 35.0%
TTCAGGTGTATGGTTAACTT+TGG + chr1.1:72485565-72485584 None:intergenic 35.0%
! TCTGGACTTCTTCATTTTCA+AGG + chr1.1:72486316-72486335 None:intergenic 35.0%
! TTGAATGTAACCAAGAGTGT+CGG + chr1.1:72484722-72484741 None:intergenic 35.0%
!! ATGATAGAGTTGATATCGGA+AGG + chr1.1:72484255-72484274 None:intergenic 35.0%
AAACCAAACAAGGTAGAAGG+TGG + chr1.1:72485238-72485257 None:intergenic 40.0%
AAACCAACATGGTGGTTCAA+CGG + chr1.1:72484608-72484627 None:intergenic 40.0%
AAGGAAAGTCTTGGAAACGA+CGG + chr1.1:72484193-72484212 None:intergenic 40.0%
ACAATTACCGAAAACGTGTC+TGG - chr1.1:72484680-72484699 MS.gene006296:intron 40.0%
AGACGAAGATTAGCAACTTC+GGG + chr1.1:72485969-72485988 None:intergenic 40.0%
AGCAAATGCTCCTTCCAAAA+AGG - chr1.1:72484293-72484312 MS.gene006296:CDS 40.0%
AGGAAGAAAGTGATTCCAGA+CGG + chr1.1:72484235-72484254 None:intergenic 40.0%
AGTGTTATCGAGATAAAGGC+TGG - chr1.1:72486338-72486357 MS.gene006296:CDS 40.0%
ATGGGAGAGTTCTTCAATTC+AGG - chr1.1:72486290-72486309 MS.gene006296:CDS 40.0%
CAAGGGGAATTTCTTTCTTG+AGG - chr1.1:72486367-72486386 MS.gene006296:CDS 40.0%
CTCAAGAAAGAAATTCCCCT+TGG + chr1.1:72486369-72486388 None:intergenic 40.0%
CTTCCTGTGGATTTATCTGT+CGG - chr1.1:72486101-72486120 MS.gene006296:intron 40.0%
GACACACACAAACACAAACA+TGG + chr1.1:72484793-72484812 None:intergenic 40.0%
GACCAACATCACTGTTATTG+AGG + chr1.1:72485594-72485613 None:intergenic 40.0%
GATGATAGGTCGATCAGATA+GGG + chr1.1:72484331-72484350 None:intergenic 40.0%
GGATAGTTACACATTGACAG+CGG + chr1.1:72484772-72484791 None:intergenic 40.0%
GGGTTTGAAGATTTAGCAGA+AGG - chr1.1:72484114-72484133 MS.gene006296:CDS 40.0%
GTTTCCTTAATGAGGGGAAT+AGG + chr1.1:72485344-72485363 None:intergenic 40.0%
TACAAACCAAACCAACATGG+TGG + chr1.1:72484616-72484635 None:intergenic 40.0%
TAGATCTCTCGCCATTACTT+GGG - chr1.1:72485119-72485138 MS.gene006296:intron 40.0%
TGATCCTATTCCCCTCATTA+AGG - chr1.1:72485337-72485356 MS.gene006296:intron 40.0%
TGATGATAGGTCGATCAGAT+AGG + chr1.1:72484332-72484351 None:intergenic 40.0%
TTCTTGAGGGAATAGAAGTG+AGG - chr1.1:72486381-72486400 MS.gene006296:CDS 40.0%
TTGCTAATCTTCGTCTTGTG+TGG - chr1.1:72485973-72485992 MS.gene006296:intron 40.0%
! AGATAGAGAGCCTTTTTGGA+AGG + chr1.1:72484306-72484325 None:intergenic 40.0%
! CATCTCTGCAACTTTTGTGT+TGG - chr1.1:72485935-72485954 MS.gene006296:intron 40.0%
AAAATGGCCAACCTGGAATC+AGG + chr1.1:72485180-72485199 None:intergenic 45.0%
AAAGTGATTCCAGACGGCAT+CGG + chr1.1:72484229-72484248 None:intergenic 45.0%
ACACCGACAGATAAATCCAC+AGG + chr1.1:72486107-72486126 None:intergenic 45.0%
AGATCTCTCGCCATTACTTG+GGG - chr1.1:72485120-72485139 MS.gene006296:intron 45.0%
ATAAAGGCTGGTGAGACCAA+GGG - chr1.1:72486350-72486369 MS.gene006296:CDS 45.0%
ATGATGACCGCTATTGGATC+TGG - chr1.1:72485145-72485164 MS.gene006296:intron 45.0%
ATGGTGGTTCAACGGAACAA+CGG + chr1.1:72484600-72484619 None:intergenic 45.0%
CATCATCGACGATGCCAAAA+AGG - chr1.1:72484347-72484366 MS.gene006296:CDS 45.0%
CGACAGATAAATCCACAGGA+AGG + chr1.1:72486103-72486122 None:intergenic 45.0%
CGCAGACATGGAAGACTTTA+CGG - chr1.1:72486191-72486210 MS.gene006296:CDS 45.0%
CGTAAAGTCTTCCATGTCTG+CGG + chr1.1:72486193-72486212 None:intergenic 45.0%
CTAATCTTCGTCTTGTGTGG+TGG - chr1.1:72485976-72485995 MS.gene006296:intron 45.0%
CTAGATCTCTCGCCATTACT+TGG - chr1.1:72485118-72485137 MS.gene006296:intron 45.0%
GACGAAGATTAGCAACTTCG+GGG + chr1.1:72485968-72485987 None:intergenic 45.0%
GAGGTTCAGATTCAGGTGTA+TGG + chr1.1:72485575-72485594 None:intergenic 45.0%
GCAAGATGAACGACAATGAG+AGG - chr1.1:72485374-72485393 MS.gene006296:CDS 45.0%
GTCATCATCACCCCAAGTAA+TGG + chr1.1:72485133-72485152 None:intergenic 45.0%
GTCCTTGTGTGAGAAGTGAT+GGG - chr1.1:72486252-72486271 MS.gene006296:CDS 45.0%
GTGTTTGTGTGTGTCTGTGT+CGG - chr1.1:72484798-72484817 MS.gene006296:intron 45.0%
TAGTGGTCCAGATCCAATAG+CGG + chr1.1:72485155-72485174 None:intergenic 45.0%
TCTCCACCTTCTACCTTGTT+TGG - chr1.1:72485232-72485251 MS.gene006296:intron 45.0%
TGGATCCAAATGTAGAACGC+AGG - chr1.1:72486162-72486181 MS.gene006296:CDS 45.0%
TTCTGCCTGCGTTCTACATT+TGG + chr1.1:72486170-72486189 None:intergenic 45.0%
TTGGCATCGTCGATGATGAT+AGG + chr1.1:72484345-72484364 None:intergenic 45.0%
! CTGCAACTTTTGTGTTGGAC+AGG - chr1.1:72485940-72485959 MS.gene006296:intron 45.0%
! GGCAAGATAGAGAGCCTTTT+TGG + chr1.1:72484310-72484329 None:intergenic 45.0%
! GTTGAACCACCATGTTGGTT+TGG - chr1.1:72484607-72484626 MS.gene006296:intron 45.0%
!! GAAGGAGCATTTGCTAGAGA+AGG + chr1.1:72484288-72484307 None:intergenic 45.0%
!! GATTTATCTGTCGGTGTCGA+AGG - chr1.1:72486110-72486129 MS.gene006296:intron 45.0%
!! TACATTTATTATTATTATTA+GGG - chr1.1:72484561-72484580 MS.gene006296:intron 5.0%
ACTGTTGTCACCGACACTCT+TGG - chr1.1:72484709-72484728 MS.gene006296:intron 50.0%
AGGTTGCATGACAGAGTGGT+AGG - chr1.1:72486221-72486240 MS.gene006296:CDS 50.0%
AGTCGTACGAGACAGTATGG+AGG + chr1.1:72484148-72484167 None:intergenic 50.0%
CAACCTGGAATCAGGCATAG+TGG + chr1.1:72485172-72485191 None:intergenic 50.0%
CACCCATCACTTCTCACACA+AGG + chr1.1:72486257-72486276 None:intergenic 50.0%
CACTATGCCTGATTCCAGGT+TGG - chr1.1:72485170-72485189 MS.gene006296:intron 50.0%
CATACTGTCTCGTACGACTC+CGG - chr1.1:72484149-72484168 MS.gene006296:CDS 50.0%
CGTCCTTGTGTGAGAAGTGA+TGG - chr1.1:72486251-72486270 MS.gene006296:CDS 50.0%
GATAAAGGCTGGTGAGACCA+AGG - chr1.1:72486349-72486368 MS.gene006296:CDS 50.0%
GGGAATAGAAGTGAGGCCTA+AGG - chr1.1:72486388-72486407 MS.gene006296:CDS 50.0%
GGGTGGTTGGAGATTGAGAT+GGG - chr1.1:72486272-72486291 MS.gene006296:CDS 50.0%
GTTCCGTTGAACCACCATGT+TGG - chr1.1:72484602-72484621 MS.gene006296:intron 50.0%
TAAAGGCTGGTGAGACCAAG+GGG - chr1.1:72486351-72486370 MS.gene006296:CDS 50.0%
TCACTTCTCACACAAGGACG+CGG + chr1.1:72486251-72486270 None:intergenic 50.0%
TGGGTGGTTGGAGATTGAGA+TGG - chr1.1:72486271-72486290 MS.gene006296:CDS 50.0%
TGGGTTTGAGAACCTTCCTG+TGG - chr1.1:72486088-72486107 MS.gene006296:intron 50.0%
TGTGGTGGCTCGAAATTCGT+GGG - chr1.1:72485991-72486010 MS.gene006296:intron 50.0%
! ATTCCAGACGGCATCGGAAT+CGG + chr1.1:72484223-72484242 None:intergenic 50.0%
! CTTGTGTGAGAAGTGATGGG+TGG - chr1.1:72486255-72486274 MS.gene006296:CDS 50.0%
! TCGGACACCAGACACGTTTT+CGG + chr1.1:72484690-72484709 None:intergenic 50.0%
!! AGAGTGTCGGTGACAACAGT+CGG + chr1.1:72484709-72484728 None:intergenic 50.0%
!! TGTGAGAAGTGATGGGTGGT+TGG - chr1.1:72486259-72486278 MS.gene006296:CDS 50.0%
!! TTATCTGTCGGTGTCGAAGG+TGG - chr1.1:72486113-72486132 MS.gene006296:intron 50.0%
CGGAGTCGTACGAGACAGTA+TGG + chr1.1:72484151-72484170 None:intergenic 55.0%
GAAGACTTTACGGTCGTGCG+AGG - chr1.1:72486201-72486220 MS.gene006296:CDS 55.0%
GGACCACTATGCCTGATTCC+AGG - chr1.1:72485166-72485185 MS.gene006296:intron 55.0%
GGCGGCAGAAAGGAAAGTCT+TGG + chr1.1:72484202-72484221 None:intergenic 55.0%
GGGAGGAAAAATGGCCAACC+TGG + chr1.1:72485187-72485206 None:intergenic 55.0%
GTGTGGTGGCTCGAAATTCG+TGG - chr1.1:72485990-72486009 MS.gene006296:intron 55.0%
TGCGAGGTTGCATGACAGAG+TGG - chr1.1:72486217-72486236 MS.gene006296:CDS 55.0%
! GGGGTGATGATGACCGCTAT+TGG - chr1.1:72485139-72485158 MS.gene006296:intron 55.0%
CATCGGAATCGGCGGCAGAA+AGG + chr1.1:72484212-72484231 None:intergenic 60.0%
GGAAACGACGGAGAGTCTGC+CGG + chr1.1:72484181-72484200 None:intergenic 60.0%
CGCAGGCAGAACCGCAGACA+TGG - chr1.1:72486179-72486198 MS.gene006296:CDS 65.0%
CGTACGACTCCGGTTGACGC+CGG - chr1.1:72484159-72484178 MS.gene006296:CDS 65.0%
GAGAGTCTGCCGGCGTCAAC+CGG + chr1.1:72484171-72484190 None:intergenic 65.0%
! CCAGACGGCATCGGAATCGG+CGG + chr1.1:72484220-72484239 None:intergenic 65.0%
!! CCGCCGATTCCGATGCCGTC+TGG - chr1.1:72484217-72484236 MS.gene006296:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 72484108 72486421 72484108 ID=MS.gene006296
chr1.1 mRNA 72484108 72486421 72484108 ID=MS.gene006296.t1;Parent=MS.gene006296
chr1.1 exon 72486161 72486421 72486161 ID=MS.gene006296.t1.exon1;Parent=MS.gene006296.t1
chr1.1 CDS 72486161 72486421 72486161 ID=cds.MS.gene006296.t1;Parent=MS.gene006296.t1
chr1.1 exon 72485342 72485460 72485342 ID=MS.gene006296.t1.exon2;Parent=MS.gene006296.t1
chr1.1 CDS 72485342 72485460 72485342 ID=cds.MS.gene006296.t1;Parent=MS.gene006296.t1
chr1.1 exon 72484108 72484567 72484108 ID=MS.gene006296.t1.exon3;Parent=MS.gene006296.t1
chr1.1 CDS 72484108 72484567 72484108 ID=cds.MS.gene006296.t1;Parent=MS.gene006296.t1
Gene Sequence

>MS.gene006296

ATGACAGGGTTTGAAGATTTAGCAGAAGGATGCATTTCCTCCATACTGTCTCGTACGACTCCGGTTGACGCCGGCAGACTCTCCGTCGTTTCCAAGACTTTCCTTTCTGCCGCCGATTCCGATGCCGTCTGGAATCACTTTCTTCCTTCCGATATCAACTCTATCATCTCACAGTCACCTTCTCTAGCAAATGCTCCTTCCAAAAAGGCTCTCTATCTTGCCCTATCTGATCGACCTATCATCATCGACGATGCCAAAAAGGTATCATCACATATTTTATCATCTTCTGAAATATTAGGGTTTATTATCGTTGATCATACGTAAACTTAATTGATTGTTCTTTCATGTTAGGGCTTAAGATATTCACTGAACATTAATCATCAGAATTCACTTCTGCATGTATCAATAAATTACTTGATCGCTTTGCAAATAACTTGTTTTATAATAATCTTGTACATTTATTATTATTATTAGGGTAGTGCAGCTGAGCCGTTGTTCCGTTGAACCACCATGTTGGTTTGGTTTGTAAAGATATTCGATAGATTAGATCTACCTAGCACTTACACTTATGAACAATTACCGAAAACGTGTCTGGTGTCCGACTGTTGTCACCGACACTCTTGGTTACATTCAATTATGCCATTTCTTTTTTAAATAATTACCGCTGTCAATGTGTAACTATCCATGTTTGTGTTTGTGTGTGTCTGTGTCGGTGATTCATAGCATTAGATATATTATTAAATAGGTACCCCTACAAATTAATCAAAATCAGTTAACGATTTTGTTTATTTGTTTGTGCTTTTAAATTGTGCCCTGTAAATGTATATTGGCTGAAGAAAGTCTGACACTATGCCTGTATTTTCTATATCTTCTCAATTGATTGCTGTAAAATATATGGTGATTTTTTAAATGCTTAGTTTGGAAAGCTAATAATAAGCCTTTTGGGTATATTGAAATGCAGAGCTTTCAATTGGATAGAAAAAGTGGAAACAAGTGTTACATGCTTGCTGCTAGATCTCTCGCCATTACTTGGGGTGATGATGACCGCTATTGGATCTGGACCACTATGCCTGATTCCAGGTTGGCCATTTTTCCTCCCCCAAATTTACTCATTTTTATTGGTTTCTCCACCTTCTACCTTGTTTGGTTTAACATTGTTCTTTCTCCTTTCTCGGTGAATTGTTCATTCCATTTCCTTGGATATTTCGTATCTGAGTTTATACTTTGATTGATCCTATTCCCCTCATTAAGGAAACTTTCATCTATGCAAGATGAACGACAATGAGAGGTTGAATATACCCATAGTCTTTGGCTTTTCTTCTATGAAAGATGAAAAACAATGAGAAGTTGAATATACATAAAGAAGTTAAATGAAAATATTTTTCATTTCAGCTTCTCTCACTGTCTCTTCATTTTTCCTTCTAAGTGAATACTTCTTGTTAGACTATTCAATCCCAAAGTTAACCATACACCTGAATCTGAACCTCAATAACAGTGATGTTGGTCCACTGTCTAATAATTTTTTTTTATAGATAACAAACAATACAACTTAGTAACTGAGAAGTTTATCATAATCGATTACACTTGAAATAATTTAGTTATCATTGGGACAATATATGATAACTGATGTTTTTATTAGTTGAGCTGTTTCAAAGTTTTTTTGGTGAAAATATTTTGCTGTTATTACTCTTTTTGATGATGGAAACTTTGATTCAACTCGCAAATTTTAGTTGATGAGCTTGCATTGTTTGTGTACGTACACATGTATAAATATTCCATTTATGATGTTATGAATCCTTTTCAACTTTTTCTCAATTCTTGTATTCTCATCTCTGCAACTTTTGTGTTGGACAGGTTCCCCGAAGTTGCTAATCTTCGTCTTGTGTGGTGGCTCGAAATTCGTGGGATGATTAACAATCTTGCCTTGTCTCCAAATACTCAGTATGCAGCTTATCTTGTATACAAATTGATTGATGGCTATGGGTTTGAGAACCTTCCTGTGGATTTATCTGTCGGTGTCGAAGGTGGCCATAGTAGCACTAAAATTGTCTGTTTGGATCCAAATGTAGAACGCAGGCAGAACCGCAGACATGGAAGACTTTACGGTCGTGCGAGGTTGCATGACAGAGTGGTAGGATTACCGCGTCCTTGTGTGAGAAGTGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCTTCAATTCAGGCCTTGAAAATGAAGAAGTCCAGATGAGTGTTATCGAGATAAAGGCTGGTGAGACCAAGGGGAATTTCTTTCTTGAGGGAATAGAAGTGAGGCCTAAGGTAGACAATTAA

Protein sequence

>MS.gene006296.t1

MTGFEDLAEGCISSILSRTTPVDAGRLSVVSKTFLSAADSDAVWNHFLPSDINSIISQSPSLANAPSKKALYLALSDRPIIIDDAKKSFQLDRKSGNKCYMLAARSLAITWGDDDRYWIWTTMPDSRFPEVANLRLVWWLEIRGMINNLALSPNTQYAAYLVYKLIDGYGFENLPVDLSVGVEGGHSSTKIVCLDPNVERRQNRRHGRLYGRARLHDRVVGLPRPCVRSDGWLEIEMGEFFNSGLENEEVQMSVIEIKAGETKGNFFLEGIEVRPKVDN