AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005033

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005033.t1 MTR_1g079410 87.153 288 23 2 1 288 1 274 0.0 503
MS.gene005033.t1 MTR_1g079400 68.874 302 50 3 2 287 6 279 2.70e-130 371
MS.gene005033.t1 MTR_1g079260 56.701 291 99 5 6 288 2 273 5.37e-106 309
MS.gene005033.t1 MTR_1g079370 56.537 283 103 4 6 287 2 265 3.45e-103 302
MS.gene005033.t1 MTR_1g100597 56.944 288 95 5 9 287 5 272 5.51e-102 299
MS.gene005033.t1 MTR_1g079380 55.124 283 107 4 6 287 2 265 2.67e-97 288
MS.gene005033.t1 MTR_1g079460 55.830 283 102 5 9 288 5 267 9.36e-97 286
MS.gene005033.t1 MTR_1g079180 54.417 283 103 7 9 287 5 265 9.46e-91 270
MS.gene005033.t1 MTR_1g079200 52.817 284 105 6 9 287 5 264 7.84e-90 268
MS.gene005033.t1 MTR_1g079230 51.890 291 112 5 6 287 2 273 1.16e-87 263
MS.gene005033.t1 MTR_1g079850 49.495 297 118 6 7 288 3 282 1.18e-81 248
MS.gene005033.t1 MTR_3g452600 50.000 280 118 5 8 287 10 267 3.47e-80 243
MS.gene005033.t1 MTR_1g100613 53.282 259 90 5 24 270 5 244 8.38e-80 242
MS.gene005033.t1 MTR_1g079140 44.969 318 125 5 2 287 7 306 7.97e-77 236
MS.gene005033.t1 MTR_1g026510 46.154 299 127 9 7 288 3 284 1.12e-73 228
MS.gene005033.t1 MTR_2g079100 48.592 284 110 7 7 284 8 261 1.71e-73 226
MS.gene005033.t1 MTR_3g006850 46.226 318 114 9 9 288 18 316 1.98e-73 228
MS.gene005033.t1 MTR_1g079250 46.102 295 128 7 7 288 3 279 2.36e-69 217
MS.gene005033.t1 MTR_3g450990 44.333 300 121 7 8 287 10 283 6.74e-69 215
MS.gene005033.t1 MTR_1g083580 40.203 296 143 8 6 287 6 281 2.53e-65 206
MS.gene005033.t1 MTR_7g112550 42.667 300 133 11 6 287 5 283 3.99e-65 206
MS.gene005033.t1 MTR_1g079350 44.983 289 137 6 6 287 2 275 2.08e-62 198
MS.gene005033.t1 MTR_1g079340 43.878 294 138 7 9 287 44 325 6.45e-57 186
MS.gene005033.t1 MTR_7g096300 47.212 269 107 9 6 267 2 242 5.15e-54 187
MS.gene005033.t1 MTR_7g112560 38.078 281 149 6 8 287 1 257 7.22e-53 173
MS.gene005033.t1 MTR_1g078470 56.180 178 71 5 111 287 13 184 9.24e-53 171
MS.gene005033.t1 MTR_4g023570 35.231 281 137 4 8 287 1 237 2.49e-45 153
MS.gene005033.t1 MTR_1g079240 46.597 191 88 4 98 287 2 179 1.45e-42 144
MS.gene005033.t1 MTR_1g079130 44.041 193 77 4 122 287 1 189 1.34e-41 142
MS.gene005033.t1 MTR_1g076870 51.471 136 47 2 149 267 2 135 1.38e-33 120
MS.gene005033.t1 MTR_1g079350 40.462 173 78 5 6 173 2 154 9.23e-27 104
MS.gene005033.t1 MTR_1g079210 48.387 124 49 2 151 261 8 129 1.65e-23 93.6
MS.gene005033.t1 MTR_7g096310 42.748 131 58 4 75 203 44 159 1.18e-21 89.7
MS.gene005033.t1 MTR_3g058640 50.485 103 48 2 149 251 7 106 2.20e-21 87.0
MS.gene005033.t1 MTR_4g083970 27.751 209 126 4 84 287 102 290 2.21e-20 89.0
MS.gene005033.t1 MTR_2g042540 42.241 116 52 2 9 124 5 105 8.57e-20 83.6
MS.gene005033.t1 MTR_1g078460 52.326 86 37 1 7 92 66 147 6.72e-19 81.6
MS.gene005033.t1 MTR_7g103380 24.315 292 179 8 11 288 22 285 6.41e-18 82.4
MS.gene005033.t1 MTR_4g102770 32.484 157 91 3 11 167 22 163 8.42e-16 76.3
MS.gene005033.t1 MTR_1g101390 31.847 157 91 3 11 167 31 171 4.05e-15 74.3
MS.gene005033.t1 MTR_0113s0040 27.607 163 102 3 5 167 19 165 5.45e-14 70.9
MS.gene005033.t1 MTR_0002s0020 28.571 161 98 2 11 168 25 171 7.50e-14 70.5
MS.gene005033.t1 MTR_1g079220 50.725 69 31 2 186 254 1 66 1.46e-13 65.1
MS.gene005033.t1 MTR_5g010800 26.829 164 102 3 6 168 15 161 5.36e-13 68.2
MS.gene005033.t1 MTR_1g079390 68.000 50 14 2 233 282 8 55 1.15e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005033.t1 AT2G02360 42.612 291 137 6 1 288 7 270 1.16e-72 224
MS.gene005033.t1 AT2G02230 37.615 327 138 9 6 288 30 334 9.91e-68 214
MS.gene005033.t1 AT2G02250 41.754 285 140 7 6 288 45 305 1.48e-65 207
MS.gene005033.t1 AT2G02240 41.549 284 141 5 6 288 59 318 6.33e-62 199
MS.gene005033.t1 AT2G02340 40.559 286 147 6 6 286 34 301 6.61e-61 196
MS.gene005033.t1 AT1G80110 41.877 277 135 7 11 286 4 255 2.45e-59 190
MS.gene005033.t1 AT2G02350 37.979 287 150 6 6 288 22 284 1.83e-54 179
MS.gene005033.t1 AT1G09155 39.661 295 143 8 11 287 3 280 4.15e-54 177
MS.gene005033.t1 AT1G56240 39.796 294 142 8 11 286 4 280 3.33e-51 170
MS.gene005033.t1 AT1G56250 40.678 295 140 9 11 287 4 281 1.63e-50 168
MS.gene005033.t1 AT2G02320 37.631 287 141 8 11 288 43 300 1.65e-46 158
MS.gene005033.t1 AT2G02310 34.737 285 160 6 6 287 43 304 4.60e-45 155
MS.gene005033.t1 AT2G02300 34.828 290 141 10 6 287 32 281 6.09e-40 140
MS.gene005033.t1 AT5G24560 46.250 160 66 2 11 170 6 145 1.33e-39 137
MS.gene005033.t1 AT2G02350 34.503 171 104 4 122 288 1 167 1.37e-23 95.1
MS.gene005033.t1 AT3G53000 25.342 292 171 9 11 286 24 284 6.71e-18 82.4
MS.gene005033.t1 AT4G19850 31.694 183 96 6 113 287 15 176 3.99e-17 77.8
MS.gene005033.t1 AT4G19850 31.694 183 96 6 113 287 57 218 6.03e-17 78.2
MS.gene005033.t1 AT1G12710 31.098 164 96 3 5 168 25 171 2.19e-14 72.4
MS.gene005033.t1 AT3G61060 29.677 155 94 2 11 165 28 167 4.75e-14 71.2
MS.gene005033.t1 AT1G65390 27.684 177 105 4 115 287 253 410 1.04e-13 71.2
MS.gene005033.t1 AT5G52120 30.909 165 96 3 8 168 21 171 1.12e-13 70.1
MS.gene005033.t1 AT3G61060 29.677 155 93 2 11 165 28 166 1.68e-13 69.7
MS.gene005033.t1 AT1G63090 31.013 158 92 3 11 168 29 169 2.52e-13 69.3
MS.gene005033.t1 AT4G19840 24.887 221 142 5 73 288 45 246 4.44e-13 67.8
MS.gene005033.t1 AT1G33920 27.322 183 94 5 117 287 9 164 3.84e-12 63.5
MS.gene005033.t1 AT2G26820 23.316 193 124 4 103 286 284 461 3.46e-11 63.9
MS.gene005033.t1 AT2G26820 24.855 173 111 3 118 286 320 477 6.19e-11 63.2

Find 81 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTGCTGGTTTGAAATTTA+TGG 0.100064 1.3:-56447350 MS.gene005033:CDS
AGTGAGAAGTGATGGATTTC+TGG 0.210364 1.3:-56447111 MS.gene005033:CDS
AATCCATCACTTCTCACTTT+TGG 0.235555 1.3:+56447116 None:intergenic
TTAAACTTGACTCTTTATTA+TGG 0.262984 1.3:-56447637 MS.gene005033:CDS
CGTTCTCTATCATCATAGTC+TGG 0.266145 1.3:+56447167 None:intergenic
TCTCAACAACTTCATCTTCT+AGG 0.271024 1.3:+56447057 None:intergenic
TACGAAGTCTAGCAACTTCT+TGG 0.288075 1.3:+56447375 None:intergenic
GGGTGACACTCCTTGCTATT+GGG 0.294051 1.3:-56447527 MS.gene005033:CDS
AACTCGATCCTTCACTTCTT+AGG 0.308997 1.3:+56446966 None:intergenic
CCGCTGAATCAGATATTGTT+TGG 0.317627 1.3:-56447873 MS.gene005033:CDS
ATGGGAGAGTTCTTCAATTC+AGG 0.321358 1.3:-56447080 MS.gene005033:CDS
TCTGCTGGTTTGAAATTTAT+GGG 0.342537 1.3:-56447349 MS.gene005033:CDS
GGGGTGACACTCCTTGCTAT+TGG 0.354208 1.3:-56447528 MS.gene005033:CDS
TTTACCATTGTTGATTATGA+TGG 0.358804 1.3:+56447735 None:intergenic
AGAGAAACGGAGTGGTAAAA+AGG 0.359870 1.3:-56447587 MS.gene005033:CDS
AGTGAGATATAGAGACTTCT+TGG 0.362866 1.3:+56447771 None:intergenic
GATGGGTGTACTTGAAATAA+AGG 0.367176 1.3:-56447036 MS.gene005033:CDS
CGCTGAATCAGATATTGTTT+GGG 0.389539 1.3:-56447872 MS.gene005033:CDS
AGCGGCAGAACAAAAGCCTT+TGG 0.405094 1.3:+56447891 None:intergenic
CTAGACTTCGTACGGTCTGC+TGG 0.413537 1.3:-56447364 MS.gene005033:CDS
CTAGAGATCTCTCCATTACT+TGG 0.414237 1.3:-56447549 MS.gene005033:CDS
AAAGGTGGTTTCATTCTTGA+AGG 0.434634 1.3:-56447002 MS.gene005033:CDS
TGGGTCCAACCAAACATTCT+TGG 0.440943 1.3:+56447187 None:intergenic
ACACTCCTTGCTATTGGGAT+TGG 0.441059 1.3:-56447522 MS.gene005033:CDS
AAGTTAACTGTGGGTGTACT+TGG 0.444694 1.3:-56447230 MS.gene005033:CDS
AAGCACGATAGAGGCTTTGC+CGG 0.461575 1.3:-56447980 MS.gene005033:CDS
AGCTACGTATTGAGTATTTG+AGG 0.465011 1.3:+56447304 None:intergenic
TTACCATTGTTGATTATGAT+GGG 0.474095 1.3:+56447736 None:intergenic
AGAGCTTTCAATTAGAGAAA+CGG 0.476839 1.3:-56447600 MS.gene005033:CDS
GTGTATCTACCAAGAATGTT+TGG 0.478752 1.3:-56447196 MS.gene005033:CDS
TAGAGATCTCTCCATTACTT+GGG 0.480318 1.3:-56447548 MS.gene005033:CDS
TTGAAAGCTCTGAAATTTAG+CGG 0.493619 1.3:+56447612 None:intergenic
AGAAATGATTGAGATCAAAT+CGG 0.495855 1.3:+56447834 None:intergenic
AGTTGTATGCGACAATATCT+TGG 0.496653 1.3:+56447945 None:intergenic
GTTCTCTATCATCATAGTCT+GGG 0.511952 1.3:+56447168 None:intergenic
AAGTACACCCACAGTTAACT+TGG 0.516811 1.3:+56447232 None:intergenic
CGTCCAAAAGTGAGAAGTGA+TGG 0.519993 1.3:-56447119 MS.gene005033:CDS
GAGATATAGAGACTTCTTGG+AGG 0.521963 1.3:+56447774 None:intergenic
TAAACAGTGAGGACGCAGAC+TGG 0.534129 1.3:+56447806 None:intergenic
ATCTGACCTGGACTCTGGTA+GGG 0.540951 1.3:+56447495 None:intergenic
ATGATTGAGATCAAATCGGA+TGG 0.542290 1.3:+56447838 None:intergenic
TAGAGACTTCTTGGAGGGAG+AGG 0.543893 1.3:+56447780 None:intergenic
AGGAGTGTCACCCCAAGTAA+TGG 0.550622 1.3:+56447537 None:intergenic
ATGGGTGTACTTGAAATAAA+GGG 0.553967 1.3:-56447035 MS.gene005033:CDS
ATCTACCAAGAATGTTTGGT+TGG 0.558152 1.3:-56447192 MS.gene005033:CDS
ATCTTGGCAATGCATCCCTC+CGG 0.558404 1.3:+56447961 None:intergenic
GATCTGACCTGGACTCTGGT+AGG 0.558734 1.3:+56447494 None:intergenic
AGGCTCTCACTTGTTTCCAA+AGG 0.561908 1.3:-56447907 MS.gene005033:CDS
ACGATAGAGGCTTTGCCGGA+GGG 0.562687 1.3:-56447976 MS.gene005033:CDS
GGATTTCTGGAGATTGAGAT+GGG 0.566350 1.3:-56447098 MS.gene005033:CDS
ATAAGATCTGACCTGGACTC+TGG 0.567399 1.3:+56447490 None:intergenic
AAACAGTGAGGACGCAGACT+GGG 0.567855 1.3:+56447807 None:intergenic
TGGATTTCTGGAGATTGAGA+TGG 0.574304 1.3:-56447099 MS.gene005033:CDS
GGATAACCCTACCAGAGTCC+AGG 0.575507 1.3:-56447501 MS.gene005033:intron
AGAAGTTGCTAGACTTCGTA+CGG 0.575916 1.3:-56447372 MS.gene005033:CDS
AAATAAGACCTAAGAAGTGA+AGG 0.584107 1.3:-56446974 None:intergenic
AACATTCTTGGTAGATACAC+CGG 0.584303 1.3:+56447199 None:intergenic
AGAAGATGAAGTTGTTGAGA+TGG 0.589182 1.3:-56447054 MS.gene005033:CDS
GAACGAAATGACGAGTTCCA+AGG 0.592057 1.3:-56447149 MS.gene005033:CDS
CAACTCCAGTCGATTCATGT+AGG 0.592468 1.3:-56447927 MS.gene005033:CDS
CACGATAGAGGCTTTGCCGG+AGG 0.594118 1.3:-56447977 MS.gene005033:CDS
AGACTTCTTGGAGGGAGAGG+TGG 0.596099 1.3:+56447783 None:intergenic
GAGAGCCTACATGAATCGAC+TGG 0.597497 1.3:+56447922 None:intergenic
GAAGATGAAGTTGTTGAGAT+GGG 0.599122 1.3:-56447053 MS.gene005033:CDS
AGGAAGATCTTCAAAACGAT+AGG 0.608932 1.3:+56447256 None:intergenic
TCTTGGTAGATACACCGGCT+TGG 0.611482 1.3:+56447204 None:intergenic
ACACCCACAGTTAACTTGGT+AGG 0.615136 1.3:+56447236 None:intergenic
AGATATAGAGACTTCTTGGA+GGG 0.617472 1.3:+56447775 None:intergenic
TCTTCCTACCAAGTTAACTG+TGG 0.632245 1.3:-56447240 MS.gene005033:CDS
CTTCCTACCAAGTTAACTGT+GGG 0.632517 1.3:-56447239 MS.gene005033:CDS
AGAGATCTCTCCATTACTTG+GGG 0.633491 1.3:-56447547 MS.gene005033:CDS
GGTGTACTTGGAGACCAAGC+CGG 0.634271 1.3:-56447218 MS.gene005033:CDS
GTTATCCAATCCCAATAGCA+AGG 0.634767 1.3:+56447517 None:intergenic
CCAAACAATATCTGATTCAG+CGG 0.635686 1.3:+56447873 None:intergenic
ATAAAGGGTGGTCAAAACAA+AGG 0.642537 1.3:-56447020 MS.gene005033:CDS
TGATTGAGATCAAATCGGAT+GGG 0.645104 1.3:+56447839 None:intergenic
GATCCCATCATAATCAACAA+TGG 0.651324 1.3:-56447739 MS.gene005033:intron
AAGGGTGGTCAAAACAAAGG+TGG 0.659675 1.3:-56447017 MS.gene005033:CDS
GGGAGAGGTGGTAAACAGTG+AGG 0.699879 1.3:+56447795 None:intergenic
GGTGTACTTGAAATAAAGGG+TGG 0.703552 1.3:-56447032 MS.gene005033:CDS
TTTCAATTAGAGAAACGGAG+TGG 0.709938 1.3:-56447595 MS.gene005033:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAACTTGACTCTTTATTA+TGG - chr1.3:56447334-56447353 MS.gene005033:CDS 20.0%
! AGAAATGATTGAGATCAAAT+CGG + chr1.3:56447140-56447159 None:intergenic 25.0%
! CATAATCAACAATGGTAAAA+AGG - chr1.3:56447240-56447259 MS.gene005033:CDS 25.0%
!! TTACCATTGTTGATTATGAT+GGG + chr1.3:56447238-56447257 None:intergenic 25.0%
!! TTTACCATTGTTGATTATGA+TGG + chr1.3:56447239-56447258 None:intergenic 25.0%
AATCTAAATAAGATCTGACC+TGG + chr1.3:56447491-56447510 None:intergenic 30.0%
AGAGCTTTCAATTAGAGAAA+CGG - chr1.3:56447371-56447390 MS.gene005033:CDS 30.0%
ATGGGTGTACTTGAAATAAA+GGG - chr1.3:56447936-56447955 MS.gene005033:CDS 30.0%
CAAAAATCGACAACTTGATT+TGG + chr1.3:56447284-56447303 None:intergenic 30.0%
!! CATTTACTGCTGATTGATTT+TGG + chr1.3:56447549-56447568 None:intergenic 30.0%
!! TCTGCTGGTTTGAAATTTAT+GGG - chr1.3:56447622-56447641 MS.gene005033:CDS 30.0%
!! TTGAAAGCTCTGAAATTTAG+CGG + chr1.3:56447362-56447381 None:intergenic 30.0%
AAAGGTGGTTTCATTCTTGA+AGG - chr1.3:56447969-56447988 MS.gene005033:CDS 35.0%
AACATTCTTGGTAGATACAC+CGG + chr1.3:56447775-56447794 None:intergenic 35.0%
AGAAGATGAAGTTGTTGAGA+TGG - chr1.3:56447917-56447936 MS.gene005033:CDS 35.0%
AGATATAGAGACTTCTTGGA+GGG + chr1.3:56447199-56447218 None:intergenic 35.0%
AGCTACGTATTGAGTATTTG+AGG + chr1.3:56447670-56447689 None:intergenic 35.0%
AGGAAGATCTTCAAAACGAT+AGG + chr1.3:56447718-56447737 None:intergenic 35.0%
AGTGAGATATAGAGACTTCT+TGG + chr1.3:56447203-56447222 None:intergenic 35.0%
AGTTGTATGCGACAATATCT+TGG + chr1.3:56447029-56447048 None:intergenic 35.0%
ATAAAGGGTGGTCAAAACAA+AGG - chr1.3:56447951-56447970 MS.gene005033:CDS 35.0%
ATCTACCAAGAATGTTTGGT+TGG - chr1.3:56447779-56447798 MS.gene005033:CDS 35.0%
ATGATTGAGATCAAATCGGA+TGG + chr1.3:56447136-56447155 None:intergenic 35.0%
CCAAACAATATCTGATTCAG+CGG + chr1.3:56447101-56447120 None:intergenic 35.0%
CGCTGAATCAGATATTGTTT+GGG - chr1.3:56447099-56447118 MS.gene005033:CDS 35.0%
GAAGATGAAGTTGTTGAGAT+GGG - chr1.3:56447918-56447937 MS.gene005033:CDS 35.0%
GATCCCATCATAATCAACAA+TGG - chr1.3:56447232-56447251 MS.gene005033:CDS 35.0%
GATGGGTGTACTTGAAATAA+AGG - chr1.3:56447935-56447954 MS.gene005033:CDS 35.0%
GTGTATCTACCAAGAATGTT+TGG - chr1.3:56447775-56447794 MS.gene005033:CDS 35.0%
GTTCTCTATCATCATAGTCT+GGG + chr1.3:56447806-56447825 None:intergenic 35.0%
TAGAGATCTCTCCATTACTT+GGG - chr1.3:56447423-56447442 MS.gene005033:intron 35.0%
TCTCAACAACTTCATCTTCT+AGG + chr1.3:56447917-56447936 None:intergenic 35.0%
TGATTGAGATCAAATCGGAT+GGG + chr1.3:56447135-56447154 None:intergenic 35.0%
TTTCAATTAGAGAAACGGAG+TGG - chr1.3:56447376-56447395 MS.gene005033:CDS 35.0%
! AATCCATCACTTCTCACTTT+TGG + chr1.3:56447858-56447877 None:intergenic 35.0%
! AGAAGAAAAAAGCACGATAG+AGG - chr1.3:56446982-56447001 MS.gene005033:CDS 35.0%
!! GTCTGCTGGTTTGAAATTTA+TGG - chr1.3:56447621-56447640 MS.gene005033:CDS 35.0%
!! TACTGCTGATTGATTTTGGT+AGG + chr1.3:56447545-56447564 None:intergenic 35.0%
AAGTACACCCACAGTTAACT+TGG + chr1.3:56447742-56447761 None:intergenic 40.0%
AAGTTAACTGTGGGTGTACT+TGG - chr1.3:56447741-56447760 MS.gene005033:CDS 40.0%
AGAAGTTGCTAGACTTCGTA+CGG - chr1.3:56447599-56447618 MS.gene005033:CDS 40.0%
AGAGAAACGGAGTGGTAAAA+AGG - chr1.3:56447384-56447403 MS.gene005033:intron 40.0%
AGAGATCTCTCCATTACTTG+GGG - chr1.3:56447424-56447443 MS.gene005033:intron 40.0%
ATGGGAGAGTTCTTCAATTC+AGG - chr1.3:56447891-56447910 MS.gene005033:CDS 40.0%
CCGCTGAATCAGATATTGTT+TGG - chr1.3:56447098-56447117 MS.gene005033:CDS 40.0%
CGTTCTCTATCATCATAGTC+TGG + chr1.3:56447807-56447826 None:intergenic 40.0%
CTAGAGATCTCTCCATTACT+TGG - chr1.3:56447422-56447441 MS.gene005033:intron 40.0%
CTTCCTACCAAGTTAACTGT+GGG - chr1.3:56447732-56447751 MS.gene005033:intron 40.0%
GAGATATAGAGACTTCTTGG+AGG + chr1.3:56447200-56447219 None:intergenic 40.0%
GGTGTACTTGAAATAAAGGG+TGG - chr1.3:56447939-56447958 MS.gene005033:CDS 40.0%
GTTATCCAATCCCAATAGCA+AGG + chr1.3:56447457-56447476 None:intergenic 40.0%
TACGAAGTCTAGCAACTTCT+TGG + chr1.3:56447599-56447618 None:intergenic 40.0%
TCTTCCTACCAAGTTAACTG+TGG - chr1.3:56447731-56447750 MS.gene005033:intron 40.0%
! GGATTTCTGGAGATTGAGAT+GGG - chr1.3:56447873-56447892 MS.gene005033:CDS 40.0%
! TGGATTTCTGGAGATTGAGA+TGG - chr1.3:56447872-56447891 MS.gene005033:CDS 40.0%
!! AGTGAGAAGTGATGGATTTC+TGG - chr1.3:56447860-56447879 MS.gene005033:CDS 40.0%
AAGGGTGGTCAAAACAAAGG+TGG - chr1.3:56447954-56447973 MS.gene005033:CDS 45.0%
AGGCTCTCACTTGTTTCCAA+AGG - chr1.3:56447064-56447083 MS.gene005033:CDS 45.0%
ATAAGATCTGACCTGGACTC+TGG + chr1.3:56447484-56447503 None:intergenic 45.0%
CGTCCAAAAGTGAGAAGTGA+TGG - chr1.3:56447852-56447871 MS.gene005033:CDS 45.0%
GAACGAAATGACGAGTTCCA+AGG - chr1.3:56447822-56447841 MS.gene005033:CDS 45.0%
TGGGTCCAACCAAACATTCT+TGG + chr1.3:56447787-56447806 None:intergenic 45.0%
! ACACCCACAGTTAACTTGGT+AGG + chr1.3:56447738-56447757 None:intergenic 45.0%
! CAACTCCAGTCGATTCATGT+AGG - chr1.3:56447044-56447063 MS.gene005033:CDS 45.0%
! CTTTTGGACGTTCTAGTCCT+TGG + chr1.3:56447842-56447861 None:intergenic 45.0%
!! ACACTCCTTGCTATTGGGAT+TGG - chr1.3:56447449-56447468 MS.gene005033:intron 45.0%
AAACAGTGAGGACGCAGACT+GGG + chr1.3:56447167-56447186 None:intergenic 50.0%
AAGCACGATAGAGGCTTTGC+CGG - chr1.3:56446991-56447010 MS.gene005033:CDS 50.0%
AGCGGCAGAACAAAAGCCTT+TGG + chr1.3:56447083-56447102 None:intergenic 50.0%
ATCTGACCTGGACTCTGGTA+GGG + chr1.3:56447479-56447498 None:intergenic 50.0%
ATCTTGGCAATGCATCCCTC+CGG + chr1.3:56447013-56447032 None:intergenic 50.0%
GAGAGCCTACATGAATCGAC+TGG + chr1.3:56447052-56447071 None:intergenic 50.0%
TAAACAGTGAGGACGCAGAC+TGG + chr1.3:56447168-56447187 None:intergenic 50.0%
TAGAGACTTCTTGGAGGGAG+AGG + chr1.3:56447194-56447213 None:intergenic 50.0%
! TCTTGGTAGATACACCGGCT+TGG + chr1.3:56447770-56447789 None:intergenic 50.0%
!! AGGAGTGTCACCCCAAGTAA+TGG + chr1.3:56447437-56447456 None:intergenic 50.0%
!! GGGTGACACTCCTTGCTATT+GGG - chr1.3:56447444-56447463 MS.gene005033:intron 50.0%
ACGATAGAGGCTTTGCCGGA+GGG - chr1.3:56446995-56447014 MS.gene005033:CDS 55.0%
AGACTTCTTGGAGGGAGAGG+TGG + chr1.3:56447191-56447210 None:intergenic 55.0%
CTAGACTTCGTACGGTCTGC+TGG - chr1.3:56447607-56447626 MS.gene005033:CDS 55.0%
GATCTGACCTGGACTCTGGT+AGG + chr1.3:56447480-56447499 None:intergenic 55.0%
GGATAACCCTACCAGAGTCC+AGG - chr1.3:56447470-56447489 MS.gene005033:intron 55.0%
GGGAGAGGTGGTAAACAGTG+AGG + chr1.3:56447179-56447198 None:intergenic 55.0%
GGTGTACTTGGAGACCAAGC+CGG - chr1.3:56447753-56447772 MS.gene005033:CDS 55.0%
! GGGGTGACACTCCTTGCTAT+TGG - chr1.3:56447443-56447462 MS.gene005033:intron 55.0%
CACGATAGAGGCTTTGCCGG+AGG - chr1.3:56446994-56447013 MS.gene005033:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 56446977 56448016 56446977 ID=MS.gene005033
chr1.3 mRNA 56446977 56448016 56446977 ID=MS.gene005033.t1;Parent=MS.gene005033
chr1.3 exon 56447740 56448016 56447740 ID=MS.gene005033.t1.exon1;Parent=MS.gene005033.t1
chr1.3 CDS 56447740 56448016 56447740 ID=cds.MS.gene005033.t1;Parent=MS.gene005033.t1
chr1.3 exon 56447502 56447667 56447502 ID=MS.gene005033.t1.exon2;Parent=MS.gene005033.t1
chr1.3 CDS 56447502 56447667 56447502 ID=cds.MS.gene005033.t1;Parent=MS.gene005033.t1
chr1.3 exon 56446977 56447400 56446977 ID=MS.gene005033.t1.exon3;Parent=MS.gene005033.t1
chr1.3 CDS 56446977 56447400 56446977 ID=cds.MS.gene005033.t1;Parent=MS.gene005033.t1
Gene Sequence

>MS.gene005033

ATGGAAGAAGAAAAAAGCACGATAGAGGCTTTGCCGGAGGGATGCATTGCCAAGATATTGTCGCATACAACTCCAGTCGATTCATGTAGGCTCTCACTTGTTTCCAAAGGCTTTTGTTCTGCCGCTGAATCAGATATTGTTTGGGATCGTTTTCTCCCATCCGATTTGATCTCAATCATTTCTGATTCCCAGTCTGCGTCCTCACTGTTTACCACCTCTCCCTCCAAGAAGTCTCTATATCTCACTCTCTCTGACGATCCCATCATAATCAACAATGGTAAAAAGGTATCATTCTCACAAACTACCAAATCAAGTTGTCGATTTTTGCTATAATAATTATTCATTATAGTTAGAATGTTAAACTTGACTCTTTATTATGGTGCCGCTAAATTTCAGAGCTTTCAATTAGAGAAACGGAGTGGTAAAAAGGTATACATGCTTAGTGCTAGAGATCTCTCCATTACTTGGGGTGACACTCCTTGCTATTGGGATTGGATAACCCTACCAGAGTCCAGGTCAGATCTTATTTAGATTTTCTTTACTAGTAGTAATTGATTTTCTCAATCCTACCAAAATCAATCAGCAGTAAATGATTTTGTTCACAACTTTTGAACAGATTCCAAGAAGTTGCTAGACTTCGTACGGTCTGCTGGTTTGAAATTTATGGGCATATTAATAAACGTGTTTTATCCTCAAATACTCAATACGTAGCTTTTCTCGTGTTTAAGATGATCAATGCCTATCGTTTTGAAGATCTTCCTACCAAGTTAACTGTGGGTGTACTTGGAGACCAAGCCGGTGTATCTACCAAGAATGTTTGGTTGGACCCAGACTATGATGATAGAGAACGAAATGACGAGTTCCAAGGACTAGAACGTCCAAAAGTGAGAAGTGATGGATTTCTGGAGATTGAGATGGGAGAGTTCTTCAATTCAGGCCTAGAAGATGAAGTTGTTGAGATGGGTGTACTTGAAATAAAGGGTGGTCAAAACAAAGGTGGTTTCATTCTTGAAGGAATAGAAATAAGACCTAAGAAGTGA
Protein sequence

>MS.gene005033.t1

MEEEKSTIEALPEGCIAKILSHTTPVDSCRLSLVSKGFCSAAESDIVWDRFLPSDLISIISDSQSASSLFTTSPSKKSLYLTLSDDPIIINNVRMLNLTLYYGAAKFQSFQLEKRSGKKVYMLSARDLSITWGDTPCYWDWITLPESRFQEVARLRTVCWFEIYGHINKRVLSSNTQYVAFLVFKMINAYRFEDLPTKLTVGVLGDQAGVSTKNVWLDPDYDDRERNDEFQGLERPKVRSDGFLEIEMGEFFNSGLEDEVVEMGVLEIKGGQNKGGFILEGIEIRPKK