AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058615


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058615.t1 MTR_3g006850 91.118 304 25 2 1 303 13 315 0.0 549
MS.gene058615.t1 MTR_1g100597 63.787 301 79 6 3 303 2 272 1.14e-123 355
MS.gene058615.t1 MTR_1g079370 59.667 300 82 7 5 303 4 265 2.84e-112 326
MS.gene058615.t1 MTR_1g079180 60.667 300 79 6 5 303 4 265 3.16e-112 326
MS.gene058615.t1 MTR_1g079230 59.667 300 90 5 5 303 4 273 8.99e-111 322
MS.gene058615.t1 MTR_1g079260 57.756 303 94 7 3 303 2 272 6.78e-108 315
MS.gene058615.t1 MTR_1g079460 57.616 302 90 5 5 305 4 268 9.55e-106 309
MS.gene058615.t1 MTR_1g079850 58.224 304 100 6 3 303 2 281 1.58e-104 307
MS.gene058615.t1 MTR_1g079200 58.940 302 80 7 5 303 4 264 1.14e-103 304
MS.gene058615.t1 MTR_3g452600 55.776 303 89 6 5 305 10 269 1.96e-102 301
MS.gene058615.t1 MTR_1g100613 61.217 263 75 6 21 282 5 241 4.28e-97 286
MS.gene058615.t1 MTR_1g026510 54.426 305 112 6 3 303 2 283 2.23e-95 284
MS.gene058615.t1 MTR_1g079380 58.000 300 87 7 5 303 4 265 1.82e-94 282
MS.gene058615.t1 MTR_1g079250 55.082 305 105 6 3 303 2 278 8.56e-94 280
MS.gene058615.t1 MTR_3g450990 50.784 319 96 8 5 305 10 285 5.29e-88 265
MS.gene058615.t1 MTR_2g079100 51.656 302 93 9 4 300 8 261 1.23e-84 256
MS.gene058615.t1 MTR_1g079350 48.553 311 113 8 3 303 2 275 5.53e-81 246
MS.gene058615.t1 MTR_1g079410 45.955 309 120 8 2 303 5 273 1.30e-75 233
MS.gene058615.t1 MTR_1g079340 46.154 312 130 7 3 303 41 325 1.12e-72 227
MS.gene058615.t1 MTR_7g096300 51.178 297 94 9 3 293 2 253 2.26e-72 237
MS.gene058615.t1 MTR_1g079140 44.373 311 144 12 5 303 13 306 1.21e-64 206
MS.gene058615.t1 MTR_1g079400 40.065 307 143 8 2 303 9 279 2.40e-58 189
MS.gene058615.t1 MTR_1g076870 66.000 150 31 5 143 285 2 138 3.78e-58 183
MS.gene058615.t1 MTR_1g078470 49.048 210 68 4 94 303 14 184 4.63e-52 169
MS.gene058615.t1 MTR_7g112550 39.735 302 148 8 8 303 10 283 8.62e-51 169
MS.gene058615.t1 MTR_1g079350 56.494 154 50 3 3 152 2 142 1.03e-45 154
MS.gene058615.t1 MTR_1g083580 34.754 305 162 8 5 303 8 281 4.03e-43 149
MS.gene058615.t1 MTR_1g079240 42.152 223 81 5 84 303 2 179 4.28e-41 141
MS.gene058615.t1 MTR_7g112560 33.221 298 153 9 8 303 4 257 1.72e-40 142
MS.gene058615.t1 MTR_7g096310 53.147 143 48 3 61 201 38 163 3.85e-35 125
MS.gene058615.t1 MTR_4g023570 32.119 302 139 9 8 307 4 241 7.19e-35 127
MS.gene058615.t1 MTR_2g042540 62.857 105 36 2 4 107 3 105 2.96e-34 122
MS.gene058615.t1 MTR_3g058640 51.200 125 36 1 143 267 7 106 1.54e-32 116
MS.gene058615.t1 MTR_1g078460 65.909 88 27 1 4 91 66 150 5.42e-31 114
MS.gene058615.t1 MTR_1g079210 48.507 134 57 3 144 276 7 129 8.38e-29 108
MS.gene058615.t1 MTR_1g079130 38.424 203 107 7 105 303 1 189 1.73e-27 106
MS.gene058615.t1 MTR_0113s0040 26.636 214 128 6 2 201 19 217 3.83e-16 77.4
MS.gene058615.t1 MTR_7g103380 22.973 222 146 5 1 210 15 223 6.23e-15 74.3
MS.gene058615.t1 MTR_1g079220 44.318 88 24 2 180 267 1 63 5.57e-14 66.6
MS.gene058615.t1 MTR_1g101390 30.968 155 90 5 7 159 30 169 2.62e-13 69.3
MS.gene058615.t1 MTR_4g102770 29.936 157 94 4 7 161 21 163 3.53e-13 68.9
MS.gene058615.t1 MTR_0002s0020 24.561 228 140 7 1 210 18 231 4.75e-12 65.9
MS.gene058615.t1 MTR_1g079390 62.000 50 17 2 249 298 8 55 1.20e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058615.t1 AT2G02360 35.855 304 144 8 3 302 12 268 7.27e-50 167
MS.gene058615.t1 AT1G80110 37.540 309 126 10 6 302 2 255 6.40e-49 164
MS.gene058615.t1 AT1G56250 38.614 303 154 10 8 303 4 281 1.84e-45 155
MS.gene058615.t1 AT2G02230 32.919 322 173 10 5 303 32 333 6.03e-45 156
MS.gene058615.t1 AT2G02240 34.106 302 153 8 3 302 59 316 5.64e-42 147
MS.gene058615.t1 AT2G02350 33.224 304 156 9 3 302 22 282 8.51e-42 146
MS.gene058615.t1 AT1G56240 37.086 302 158 10 8 302 4 280 1.38e-41 145
MS.gene058615.t1 AT1G09155 36.570 309 152 11 8 303 3 280 1.45e-41 145
MS.gene058615.t1 AT2G02340 32.686 309 158 10 3 302 34 301 6.73e-41 144
MS.gene058615.t1 AT2G02250 32.000 300 159 9 5 302 47 303 1.49e-39 141
MS.gene058615.t1 AT2G02310 31.803 305 161 10 3 303 43 304 1.60e-38 138
MS.gene058615.t1 AT2G02320 32.154 311 161 11 4 309 39 304 4.95e-35 129
MS.gene058615.t1 AT5G24560 36.816 201 98 7 5 201 3 178 3.56e-31 116
MS.gene058615.t1 AT2G02300 30.323 310 147 10 3 303 32 281 4.44e-29 113
MS.gene058615.t1 AT2G02350 30.233 172 89 5 135 302 21 165 8.38e-16 74.3
MS.gene058615.t1 AT3G53000 24.891 229 145 7 1 217 17 230 1.27e-14 73.6
MS.gene058615.t1 AT3G61060 27.097 155 96 5 7 159 27 166 8.97e-14 70.9
MS.gene058615.t1 AT1G63090 25.778 225 133 9 1 209 22 228 4.55e-13 68.9
MS.gene058615.t1 AT3G61060 25.161 155 100 4 7 159 27 167 6.59e-13 68.2
MS.gene058615.t1 AT1G12710 24.107 224 138 8 1 209 24 230 4.87e-12 65.9
MS.gene058615.t1 AT5G52120 24.336 226 138 7 4 210 20 231 5.40e-12 65.9

Find 81 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTCAGAGCTTTAAAT+TGG 0.211874 3.1:+2472606 MS.gene058615:intron
TCTTTATTGCGTGACGCGTT+TGG 0.271431 3.1:-2474089 None:intergenic
CTGCTGATTCCGACGCTGTT+TGG 0.274846 3.1:+2472318 MS.gene058615:CDS
AGCCGCATACCGAGTATTTC+GGG 0.278643 3.1:-2473958 None:intergenic
AGGCCTAAAGGTGGAAAATT+AGG 0.306982 3.1:+2474359 MS.gene058615:CDS
AATGAGTGTTGTCGAGAAAT+TGG 0.309455 3.1:+2474289 MS.gene058615:CDS
TGCCAACGCTCCCACCAAAA+AGG 0.326568 3.1:+2472403 MS.gene058615:CDS
AGGCCATACCCGAGTGTAAT+AGG 0.331870 3.1:+2474179 MS.gene058615:CDS
CACCCATCGCTTCTCATACT+AGG 0.340594 3.1:-2474212 None:intergenic
ATTTCTCGACAACACTCATT+TGG 0.340801 3.1:-2474286 None:intergenic
CGACCATGATTGATGATGAT+TGG 0.342960 3.1:-2472452 None:intergenic
AAGCCGCATACCGAGTATTT+CGG 0.344265 3.1:-2473959 None:intergenic
GCAAACAGTACGACGTTTGT+AGG 0.364009 3.1:-2474135 None:intergenic
ATGCAAAGCTTAGCGACTTC+AGG 0.370688 3.1:-2473888 None:intergenic
AAGGGAAATTTCTTTCTTGA+AGG 0.378106 3.1:+2474326 MS.gene058615:CDS
TTCAAGATGATTGATGACTA+TGG 0.395723 3.1:+2473990 MS.gene058615:CDS
TAGCACTAAATCCGTCTGTT+TGG 0.402920 3.1:+2474064 MS.gene058615:CDS
TTCTTGAAGGAATAGAAGTT+AGG 0.408541 3.1:+2474339 MS.gene058615:CDS
GTGTTCTCGCTTAAAATTCG+TGG 0.423796 3.1:+2473912 MS.gene058615:CDS
GAGAGTCTGCAAACATCAAC+AGG 0.436594 3.1:-2472269 None:intergenic
GGATTCATATGAATGATTCC+AGG 0.439610 3.1:+2472746 MS.gene058615:CDS
ATGGCTGAGATGCATCCTTC+CGG 0.445419 3.1:-2472230 None:intergenic
TTGGAACCACTTGCTCCCTT+CGG 0.446640 3.1:+2472337 MS.gene058615:CDS
GACCATGATTGATGATGATT+GGG 0.448096 3.1:-2472451 None:intergenic
GCAAATGTCCCGGTCCTAGA+TGG 0.460524 3.1:+2474156 MS.gene058615:CDS
CACCTTCTACATCAATTGAT+AGG 0.470721 3.1:-2474034 None:intergenic
CTCGGGTATGGCCTCCATCT+AGG 0.471641 3.1:-2474170 None:intergenic
TATCAGATAGAGCGAGATAG+AGG 0.473412 3.1:-2472427 None:intergenic
CGCCCTAGTATGAGAAGCGA+TGG 0.476146 3.1:+2474209 MS.gene058615:CDS
ATTGGAGAGTGGCAATAAGA+AGG 0.476949 3.1:+2474307 MS.gene058615:CDS
GACCTATCAATTGATGTAGA+AGG 0.477578 3.1:+2474032 MS.gene058615:CDS
CGCTGCAATCCTATTACACT+CGG 0.477809 3.1:-2474188 None:intergenic
TTGGAGAGTGGCAATAAGAA+GGG 0.493842 3.1:+2474308 MS.gene058615:CDS
GATGATAGAGTTAATGAGAC+GGG 0.495408 3.1:-2472363 None:intergenic
CTCACCATTCATTGCGGTGA+TGG 0.500991 3.1:+2472673 MS.gene058615:CDS
GCCACCATCACCGCAATGAA+TGG 0.504191 3.1:-2472677 None:intergenic
ACCCATCGCTTCTCATACTA+GGG 0.511060 3.1:-2474211 None:intergenic
ATTATGACATTGATAAAGAG+TGG 0.514642 3.1:+2472725 MS.gene058615:CDS
GTATGGCCTCCATCTAGGAC+CGG 0.515958 3.1:-2474165 None:intergenic
GGAATAGAAGTTAGGCCTAA+AGG 0.521180 3.1:+2474347 MS.gene058615:CDS
ACATCAATTGATAGGTCCAT+AGG 0.521400 3.1:-2474026 None:intergenic
GTGGGAGCGTTGGCAAGGGA+AGG 0.528441 3.1:-2472395 None:intergenic
TGGGTGGTTGGAGATTGAGA+TGG 0.532103 3.1:+2474229 MS.gene058615:CDS
GAGTTCAATTCAAGACTTGA+AGG 0.533035 3.1:+2474254 MS.gene058615:CDS
AGCCCAATCATCATCAATCA+TGG 0.539989 3.1:+2472449 MS.gene058615:CDS
TGGATTTGAGAATGAACCTA+TGG 0.540096 3.1:+2474010 MS.gene058615:CDS
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 3.1:+2474230 MS.gene058615:CDS
TATGAGAAGCGATGGGTGGT+TGG 0.542058 3.1:+2474217 MS.gene058615:CDS
AATCCTATTACACTCGGGTA+TGG 0.542614 3.1:-2474182 None:intergenic
ACCATTCATTGCGGTGATGG+TGG 0.550353 3.1:+2472676 MS.gene058615:CDS
TTCAGAGCTTTAAATTGGAT+AGG 0.554237 3.1:+2472611 MS.gene058615:intron
CGTCGGAATCAGCAGCAGAA+AGG 0.559078 3.1:-2472310 None:intergenic
TTTAAATTGGATAGGAAAAG+CGG 0.567617 3.1:+2472619 MS.gene058615:CDS
TTTCCTTGTCCCGAAATACT+CGG 0.571284 3.1:+2473949 MS.gene058615:CDS
AGGAGTCGTACGAGACAGAA+TGG 0.572229 3.1:-2472249 None:intergenic
AAGGAAAGTCTTAGAAACAA+GGG 0.585673 3.1:-2472291 None:intergenic
AAAGGAAAGTCTTAGAAACA+AGG 0.587344 3.1:-2472292 None:intergenic
CATCATCAATCATGGTCGAA+AGG 0.589028 3.1:+2472457 MS.gene058615:CDS
TTTGGTGGGAGCGTTGGCAA+GGG 0.595797 3.1:-2472399 None:intergenic
AGATGATAGAGTTAATGAGA+CGG 0.608457 3.1:-2472364 None:intergenic
CGCGTTTGGATCCAAACAGA+CGG 0.612046 3.1:-2474075 None:intergenic
GGGAATCCGAAGGGAGCAAG+TGG 0.615736 3.1:-2472343 None:intergenic
ATAAAGAAAGAACGTGCTCG+AGG 0.617489 3.1:+2474105 MS.gene058615:CDS
CGTACTGTTTGCAAATGTCC+CGG 0.619734 3.1:+2474146 MS.gene058615:CDS
TATGGCCTCCATCTAGGACC+GGG 0.622013 3.1:-2474164 None:intergenic
AGACGGATTTAGTGCTACAA+TGG 0.632435 3.1:-2474058 None:intergenic
GTCCCGAAATACTCGGTATG+CGG 0.633122 3.1:+2473956 MS.gene058615:CDS
ATCAGATAGAGCGAGATAGA+GGG 0.636487 3.1:-2472426 None:intergenic
ATAGAAGTTAGGCCTAAAGG+TGG 0.643863 3.1:+2474350 MS.gene058615:CDS
TAATGAGACGGGAATCCGAA+GGG 0.645707 3.1:-2472352 None:intergenic
ATACCGAGTATTTCGGGACA+AGG 0.650354 3.1:-2473952 None:intergenic
AATGTCCCGGTCCTAGATGG+AGG 0.653167 3.1:+2474159 MS.gene058615:CDS
CTATCAATTGATGTAGAAGG+TGG 0.658482 3.1:+2474035 MS.gene058615:CDS
CAAGTGGTTCCAAACAGCGT+CGG 0.661303 3.1:-2472327 None:intergenic
TTAATGAGACGGGAATCCGA+AGG 0.663113 3.1:-2472353 None:intergenic
GCCCTAGTATGAGAAGCGAT+GGG 0.672039 3.1:+2474210 MS.gene058615:CDS
GTTGTCGAGAAATTGGAGAG+TGG 0.680092 3.1:+2474296 MS.gene058615:CDS
CTAGTATGAGAAGCGATGGG+TGG 0.686490 3.1:+2474213 MS.gene058615:CDS
GCTGCAATCCTATTACACTC+GGG 0.696916 3.1:-2474187 None:intergenic
AGATCTCTCACCATTCATTG+CGG 0.710070 3.1:+2472667 MS.gene058615:CDS
AGTGATGATAGTGATGATAG+CGG 0.780024 3.1:+2472700 MS.gene058615:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTAATCAATTGTTA+AGG + chr3.1:2472536-2472555 MS.gene058615:intron 10.0%
!! AAAAAAAAAAAAAACTAACC+TGG - chr3.1:2472767-2472786 None:intergenic 15.0%
!! CAAATATTGATATATTTAGA+GGG - chr3.1:2472947-2472966 None:intergenic 15.0%
!! TCAAATATTGATATATTTAG+AGG - chr3.1:2472948-2472967 None:intergenic 15.0%
!!! AAAACCTAAAAGAATATTTT+TGG - chr3.1:2472981-2473000 None:intergenic 15.0%
!!! AAAACCTAAGAAATATTTTA+GGG + chr3.1:2473094-2473113 MS.gene058615:intron 15.0%
!!! AAAATATTCTTTTAGGTTTT+TGG + chr3.1:2472981-2473000 MS.gene058615:intron 15.0%
!!! AATTTGTGAATCAATTTTTA+TGG + chr3.1:2473175-2473194 MS.gene058615:intron 15.0%
!!! ATTTGTGAATCAATTTTTAT+GGG + chr3.1:2473176-2473195 MS.gene058615:intron 15.0%
!! AACCTTTATGAATACTAAAT+TGG + chr3.1:2472903-2472922 MS.gene058615:intron 20.0%
!! ACCTTTATGAATACTAAATT+GGG + chr3.1:2472904-2472923 MS.gene058615:intron 20.0%
!! ATAATAGTATCATTAACACA+AGG - chr3.1:2472793-2472812 None:intergenic 20.0%
!! ATCAAATGTTGGTATATTTA+AGG + chr3.1:2473125-2473144 MS.gene058615:intron 20.0%
!! CAGTGAATATTAATGTTATA+TGG + chr3.1:2473443-2473462 MS.gene058615:intron 20.0%
!! CATATAACATTAATATTCAC+TGG - chr3.1:2473445-2473464 None:intergenic 20.0%
!! CCTAATATTTAAGAAATTCA+CGG - chr3.1:2472498-2472517 None:intergenic 20.0%
!! CTAGTATATAATATATAGTG+TGG + chr3.1:2473405-2473424 MS.gene058615:intron 20.0%
!! TCAAATGTTGGTATATTTAA+GGG + chr3.1:2473126-2473145 MS.gene058615:intron 20.0%
!!! AAACCTAAGAAATATTTTAG+GGG + chr3.1:2473095-2473114 MS.gene058615:intron 20.0%
!!! AATTGATTCACAAATTTAGT+AGG - chr3.1:2473171-2473190 None:intergenic 20.0%
!!! ATTGATTCACAAATTTAGTA+GGG - chr3.1:2473170-2473189 None:intergenic 20.0%
!!! ATTTCATGGATGAAATTTTT+TGG - chr3.1:2473012-2473031 None:intergenic 20.0%
!!! CAAAACCTAAGAAATATTTT+AGG + chr3.1:2473093-2473112 MS.gene058615:intron 20.0%
!!! CATAGATGAAATTTTCTAAA+GGG + chr3.1:2473068-2473087 MS.gene058615:intron 20.0%
!!! TCATAGATGAAATTTTCTAA+AGG + chr3.1:2473067-2473086 MS.gene058615:intron 20.0%
!!! TTTTGAGACATATTAATCTA+TGG - chr3.1:2473268-2473287 None:intergenic 20.0%
! ACCCAATTTAGTATTCATAA+AGG - chr3.1:2472908-2472927 None:intergenic 25.0%
! ATTATGACATTGATAAAGAG+TGG + chr3.1:2472725-2472744 MS.gene058615:CDS 25.0%
! ATTCATGTGTAAGTTAACTT+TGG - chr3.1:2473623-2473642 None:intergenic 25.0%
! CAAATGTTGGTATATTTAAG+GGG + chr3.1:2473127-2473146 MS.gene058615:intron 25.0%
! CCGTGAATTTCTTAAATATT+AGG + chr3.1:2472495-2472514 MS.gene058615:intron 25.0%
! CTCTGAATTTCATATATTCA+AGG - chr3.1:2472598-2472617 None:intergenic 25.0%
! GAATATTTATTTGCATAGTG+TGG + chr3.1:2473485-2473504 MS.gene058615:intron 25.0%
! TAAAAGAGAATTATCAGAGA+GGG - chr3.1:2473672-2473691 None:intergenic 25.0%
! TATGTTAATGAAGCCATATT+GGG - chr3.1:2472832-2472851 None:intergenic 25.0%
! TGTAGATACGATAATAATGT+AGG - chr3.1:2473777-2473796 None:intergenic 25.0%
! TTAAAAGAGAATTATCAGAG+AGG - chr3.1:2473673-2473692 None:intergenic 25.0%
! TTATGTTAATGAAGCCATAT+TGG - chr3.1:2472833-2472852 None:intergenic 25.0%
! TTCATGTGTAAGTTAACTTT+GGG - chr3.1:2473622-2473641 None:intergenic 25.0%
! TTGTCTTTGCAATTATTTAC+AGG + chr3.1:2473862-2473881 MS.gene058615:intron 25.0%
! TTTAAATTGGATAGGAAAAG+CGG + chr3.1:2472619-2472638 MS.gene058615:CDS 25.0%
!! AATTGGGTTAGATATGTAAT+TGG + chr3.1:2472920-2472939 MS.gene058615:intron 25.0%
!! TGCTCCAAAAATATTCTTTT+AGG + chr3.1:2472974-2472993 MS.gene058615:intron 25.0%
!! TTTTTCACATATATGTCTGT+TGG + chr3.1:2473211-2473230 MS.gene058615:intron 25.0%
!!! AACCTAAGAAATATTTTAGG+GGG + chr3.1:2473096-2473115 MS.gene058615:intron 25.0%
!!! ATTTTGAGAGAAGCTATATA+TGG - chr3.1:2473292-2473311 None:intergenic 25.0%
!!! TGAAATTCAGAGCTTTAAAT+TGG + chr3.1:2472606-2472625 MS.gene058615:intron 25.0%
AAAAGAGAATTATCAGAGAG+GGG - chr3.1:2473671-2473690 None:intergenic 30.0%
AAAGGAAAGTCTTAGAAACA+AGG - chr3.1:2472295-2472314 None:intergenic 30.0%
AAGGAAAGTCTTAGAAACAA+GGG - chr3.1:2472294-2472313 None:intergenic 30.0%
AAGGGAAATTTCTTTCTTGA+AGG + chr3.1:2474326-2474345 MS.gene058615:CDS 30.0%
AGAAATTCACGGTTATGAAA+AGG - chr3.1:2472487-2472506 None:intergenic 30.0%
AGATGATAGAGTTAATGAGA+CGG - chr3.1:2472367-2472386 None:intergenic 30.0%
ATATGGTTTGAGTGATAACA+TGG + chr3.1:2473323-2473342 MS.gene058615:intron 30.0%
GTATTATACTCCATATGTGA+TGG + chr3.1:2473800-2473819 MS.gene058615:intron 30.0%
TAGAATTCTGTTAGAAGACT+CGG - chr3.1:2473388-2473407 None:intergenic 30.0%
TATGGTTTGAGTGATAACAT+GGG + chr3.1:2473324-2473343 MS.gene058615:intron 30.0%
TGAAGCTCAATATTAGTGAT+GGG + chr3.1:2473644-2473663 MS.gene058615:intron 30.0%
TTCTTGAAGGAATAGAAGTT+AGG + chr3.1:2474339-2474358 MS.gene058615:CDS 30.0%
! TTCAAGATGATTGATGACTA+TGG + chr3.1:2473990-2474009 MS.gene058615:CDS 30.0%
!! TTCAGAGCTTTAAATTGGAT+AGG + chr3.1:2472611-2472630 MS.gene058615:intron 30.0%
!!! CATATTGGGTTTTAAGTGAT+GGG - chr3.1:2472818-2472837 None:intergenic 30.0%
!!! TCATGGATGAAATTTTTTGG+AGG - chr3.1:2473009-2473028 None:intergenic 30.0%
ACATCAATTGATAGGTCCAT+AGG - chr3.1:2474029-2474048 None:intergenic 35.0%
ATTTCTCGACAACACTCATT+TGG - chr3.1:2474289-2474308 None:intergenic 35.0%
CAAAATGAGAAGGCTACATA+TGG + chr3.1:2473306-2473325 MS.gene058615:intron 35.0%
CACCTTCTACATCAATTGAT+AGG - chr3.1:2474037-2474056 None:intergenic 35.0%
CCATCACTTAAAACCCAATA+TGG + chr3.1:2472816-2472835 MS.gene058615:intron 35.0%
CTATCAATTGATGTAGAAGG+TGG + chr3.1:2474035-2474054 MS.gene058615:CDS 35.0%
CTGAAGCTCAATATTAGTGA+TGG + chr3.1:2473643-2473662 MS.gene058615:intron 35.0%
GACCTATCAATTGATGTAGA+AGG + chr3.1:2474032-2474051 MS.gene058615:CDS 35.0%
GAGTTCAATTCAAGACTTGA+AGG + chr3.1:2474254-2474273 MS.gene058615:CDS 35.0%
GATGATAGAGTTAATGAGAC+GGG - chr3.1:2472366-2472385 None:intergenic 35.0%
GGATTCATATGAATGATTCC+AGG + chr3.1:2472746-2472765 MS.gene058615:CDS 35.0%
GTCCCCCTAAAATATTTCTT+AGG - chr3.1:2473101-2473120 None:intergenic 35.0%
GTGATTCATACCATCACATA+TGG - chr3.1:2473813-2473832 None:intergenic 35.0%
TAGCTTCTCTCAAAATGAGA+AGG + chr3.1:2473296-2473315 MS.gene058615:intron 35.0%
TAGGCTCATCAACTAAAGTT+TGG - chr3.1:2473758-2473777 None:intergenic 35.0%
TGGATTTGAGAATGAACCTA+TGG + chr3.1:2474010-2474029 MS.gene058615:CDS 35.0%
! AATGAGTGTTGTCGAGAAAT+TGG + chr3.1:2474289-2474308 MS.gene058615:CDS 35.0%
! AGTGATGATAGTGATGATAG+CGG + chr3.1:2472700-2472719 MS.gene058615:CDS 35.0%
! GAAAGTTAGAAGCATGACAA+TGG - chr3.1:2473553-2473572 None:intergenic 35.0%
! TTGCCTAATTTTCCACCTTT+AGG - chr3.1:2474365-2474384 None:intergenic 35.0%
!! GACCATGATTGATGATGATT+GGG - chr3.1:2472454-2472473 None:intergenic 35.0%
!!! CCATATTGGGTTTTAAGTGA+TGG - chr3.1:2472819-2472838 None:intergenic 35.0%
AATCCTATTACACTCGGGTA+TGG - chr3.1:2474185-2474204 None:intergenic 40.0%
ACTGCTCTACATTGAGAACA+GGG - chr3.1:2473039-2473058 None:intergenic 40.0%
AGATCTCTCACCATTCATTG+CGG + chr3.1:2472667-2472686 MS.gene058615:CDS 40.0%
AGCCCAATCATCATCAATCA+TGG + chr3.1:2472449-2472468 MS.gene058615:CDS 40.0%
AGGCCTAAAGGTGGAAAATT+AGG + chr3.1:2474359-2474378 MS.gene058615:CDS 40.0%
ATAAAGAAAGAACGTGCTCG+AGG + chr3.1:2474105-2474124 MS.gene058615:CDS 40.0%
ATAGAAGTTAGGCCTAAAGG+TGG + chr3.1:2474350-2474369 MS.gene058615:CDS 40.0%
ATCAGATAGAGCGAGATAGA+GGG - chr3.1:2472429-2472448 None:intergenic 40.0%
ATTGGAGAGTGGCAATAAGA+AGG + chr3.1:2474307-2474326 MS.gene058615:CDS 40.0%
CATCATCAATCATGGTCGAA+AGG + chr3.1:2472457-2472476 MS.gene058615:CDS 40.0%
GAGAACAGGGACTAATTTCA+TGG - chr3.1:2473026-2473045 None:intergenic 40.0%
GGAATAGAAGTTAGGCCTAA+AGG + chr3.1:2474347-2474366 MS.gene058615:CDS 40.0%
GGGGGACTAAAATCAAATGT+TGG + chr3.1:2473114-2473133 MS.gene058615:intron 40.0%
GTGTTCTCGCTTAAAATTCG+TGG + chr3.1:2473912-2473931 MS.gene058615:CDS 40.0%
TAGCACTAAATCCGTCTGTT+TGG + chr3.1:2474064-2474083 MS.gene058615:CDS 40.0%
TATCAGATAGAGCGAGATAG+AGG - chr3.1:2472430-2472449 None:intergenic 40.0%
TTGGAGAGTGGCAATAAGAA+GGG + chr3.1:2474308-2474327 MS.gene058615:CDS 40.0%
TTTCCTTGTCCCGAAATACT+CGG + chr3.1:2473949-2473968 MS.gene058615:CDS 40.0%
! AGACGGATTTAGTGCTACAA+TGG - chr3.1:2474061-2474080 None:intergenic 40.0%
! GCTTTTGATGAATTTCCGGA+AGG + chr3.1:2472215-2472234 MS.gene058615:CDS 40.0%
! GGCAGAGCTACTCATATTTT+GGG + chr3.1:2473345-2473364 MS.gene058615:intron 40.0%
! GGCAGCTTTTGATGAATTTC+CGG + chr3.1:2472211-2472230 MS.gene058615:CDS 40.0%
!! AGAGCTACTCATATTTTGGG+AGG + chr3.1:2473348-2473367 MS.gene058615:intron 40.0%
!! AGCTACTCATATTTTGGGAG+GGG + chr3.1:2473350-2473369 MS.gene058615:intron 40.0%
!! CGACCATGATTGATGATGAT+TGG - chr3.1:2472455-2472474 None:intergenic 40.0%
!! GAGCTACTCATATTTTGGGA+GGG + chr3.1:2473349-2473368 MS.gene058615:intron 40.0%
AAGCCGCATACCGAGTATTT+CGG - chr3.1:2473962-2473981 None:intergenic 45.0%
ACCCATCGCTTCTCATACTA+GGG - chr3.1:2474214-2474233 None:intergenic 45.0%
ATACCGAGTATTTCGGGACA+AGG - chr3.1:2473955-2473974 None:intergenic 45.0%
ATGCAAAGCTTAGCGACTTC+AGG - chr3.1:2473891-2473910 None:intergenic 45.0%
CACTGCTCTACATTGAGAAC+AGG - chr3.1:2473040-2473059 None:intergenic 45.0%
CGCTGCAATCCTATTACACT+CGG - chr3.1:2474191-2474210 None:intergenic 45.0%
CGTACTGTTTGCAAATGTCC+CGG + chr3.1:2474146-2474165 MS.gene058615:CDS 45.0%
GAGAGTCTGCAAACATCAAC+AGG - chr3.1:2472272-2472291 None:intergenic 45.0%
GCAAACAGTACGACGTTTGT+AGG - chr3.1:2474138-2474157 None:intergenic 45.0%
GCTGCAATCCTATTACACTC+GGG - chr3.1:2474190-2474209 None:intergenic 45.0%
GTTGTCGAGAAATTGGAGAG+TGG + chr3.1:2474296-2474315 MS.gene058615:CDS 45.0%
TAATGAGACGGGAATCCGAA+GGG - chr3.1:2472355-2472374 None:intergenic 45.0%
TCTTTATTGCGTGACGCGTT+TGG - chr3.1:2474092-2474111 None:intergenic 45.0%
TTAATGAGACGGGAATCCGA+AGG - chr3.1:2472356-2472375 None:intergenic 45.0%
TTCTGTTAGAAGACTCGGCA+TGG - chr3.1:2473383-2473402 None:intergenic 45.0%
! GGGCAGAGCTACTCATATTT+TGG + chr3.1:2473344-2473363 MS.gene058615:intron 45.0%
!! AGATAGAGGGCCTTTTTGGT+GGG - chr3.1:2472416-2472435 None:intergenic 45.0%
!!! TATTTACTTATAATTTTTTT+TGG - chr3.1:2473578-2473597 None:intergenic 5.0%
AGCCGCATACCGAGTATTTC+GGG - chr3.1:2473961-2473980 None:intergenic 50.0%
AGGAGTCGTACGAGACAGAA+TGG - chr3.1:2472252-2472271 None:intergenic 50.0%
AGGCCATACCCGAGTGTAAT+AGG + chr3.1:2474179-2474198 MS.gene058615:CDS 50.0%
ATGGCTGAGATGCATCCTTC+CGG - chr3.1:2472233-2472252 None:intergenic 50.0%
CAAGTGGTTCCAAACAGCGT+CGG - chr3.1:2472330-2472349 None:intergenic 50.0%
CACCCATCGCTTCTCATACT+AGG - chr3.1:2474215-2474234 None:intergenic 50.0%
CGCGTTTGGATCCAAACAGA+CGG - chr3.1:2474078-2474097 None:intergenic 50.0%
CTAGTATGAGAAGCGATGGG+TGG + chr3.1:2474213-2474232 MS.gene058615:CDS 50.0%
CTCACCATTCATTGCGGTGA+TGG + chr3.1:2472673-2472692 MS.gene058615:CDS 50.0%
GCCCTAGTATGAGAAGCGAT+GGG + chr3.1:2474210-2474229 MS.gene058615:CDS 50.0%
GGGTGGTTGGAGATTGAGAT+GGG + chr3.1:2474230-2474249 MS.gene058615:CDS 50.0%
GTCCCGAAATACTCGGTATG+CGG + chr3.1:2473956-2473975 MS.gene058615:CDS 50.0%
TATGAGAAGCGATGGGTGGT+TGG + chr3.1:2474217-2474236 MS.gene058615:CDS 50.0%
TGGGTGGTTGGAGATTGAGA+TGG + chr3.1:2474229-2474248 MS.gene058615:CDS 50.0%
TTAGAAGACTCGGCATGGAC+AGG - chr3.1:2473378-2473397 None:intergenic 50.0%
TTGGAACCACTTGCTCCCTT+CGG + chr3.1:2472337-2472356 MS.gene058615:CDS 50.0%
! ACCATTCATTGCGGTGATGG+TGG + chr3.1:2472676-2472695 MS.gene058615:CDS 50.0%
! AGCGAGATAGAGGGCCTTTT+TGG - chr3.1:2472420-2472439 None:intergenic 50.0%
! GAGATAGAGGGCCTTTTTGG+TGG - chr3.1:2472417-2472436 None:intergenic 50.0%
AATGTCCCGGTCCTAGATGG+AGG + chr3.1:2474159-2474178 MS.gene058615:CDS 55.0%
CGCCCTAGTATGAGAAGCGA+TGG + chr3.1:2474209-2474228 MS.gene058615:CDS 55.0%
CGTCGGAATCAGCAGCAGAA+AGG - chr3.1:2472313-2472332 None:intergenic 55.0%
GCAAATGTCCCGGTCCTAGA+TGG + chr3.1:2474156-2474175 MS.gene058615:CDS 55.0%
GCCACCATCACCGCAATGAA+TGG - chr3.1:2472680-2472699 None:intergenic 55.0%
TGCCAACGCTCCCACCAAAA+AGG + chr3.1:2472403-2472422 MS.gene058615:CDS 55.0%
! GTATGGCCTCCATCTAGGAC+CGG - chr3.1:2474168-2474187 None:intergenic 55.0%
! TATGGCCTCCATCTAGGACC+GGG - chr3.1:2474167-2474186 None:intergenic 55.0%
!! CTGCTGATTCCGACGCTGTT+TGG + chr3.1:2472318-2472337 MS.gene058615:CDS 55.0%
!! TTTGGTGGGAGCGTTGGCAA+GGG - chr3.1:2472402-2472421 None:intergenic 55.0%
!!! TTTTGGTGGGAGCGTTGGCA+AGG - chr3.1:2472403-2472422 None:intergenic 55.0%
CTCGGGTATGGCCTCCATCT+AGG - chr3.1:2474173-2474192 None:intergenic 60.0%
GGGAATCCGAAGGGAGCAAG+TGG - chr3.1:2472346-2472365 None:intergenic 60.0%
!! GGCCTTTTTGGTGGGAGCGT+TGG - chr3.1:2472408-2472427 None:intergenic 60.0%
!! GTGGGAGCGTTGGCAAGGGA+AGG - chr3.1:2472398-2472417 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 2472206 2474394 2472206 ID=MS.gene058615
chr3.1 mRNA 2472206 2474394 2472206 ID=MS.gene058615.t1;Parent=MS.gene058615
chr3.1 exon 2472206 2472478 2472206 ID=MS.gene058615.t1.exon1;Parent=MS.gene058615.t1
chr3.1 CDS 2472206 2472478 2472206 ID=cds.MS.gene058615.t1;Parent=MS.gene058615.t1
chr3.1 exon 2472616 2472767 2472616 ID=MS.gene058615.t1.exon2;Parent=MS.gene058615.t1
chr3.1 CDS 2472616 2472767 2472616 ID=cds.MS.gene058615.t1;Parent=MS.gene058615.t1
chr3.1 exon 2473884 2474394 2473884 ID=MS.gene058615.t1.exon3;Parent=MS.gene058615.t1
chr3.1 CDS 2473884 2474394 2473884 ID=cds.MS.gene058615.t1;Parent=MS.gene058615.t1
Gene Sequence

>MS.gene058615

ATGGAGGCAGCTTTTGATGAATTTCCGGAAGGATGCATCTCAGCCATTCTGTCTCGTACGACTCCTGTTGATGTTTGCAGACTCTCCCTTGTTTCTAAGACTTTCCTTTCTGCTGCTGATTCCGACGCTGTTTGGAACCACTTGCTCCCTTCGGATTCCCGTCTCATTAACTCTATCATCTCACATTCTCCTTCCCTTGCCAACGCTCCCACCAAAAAGGCCCTCTATCTCGCTCTATCTGATAGCCCAATCATCATCAATCATGGTCGAAAGGTATTCCTTTTCATAACCGTGAATTTCTTAAATATTAGGCTTTATTTTAGAAAAAATTAATTTTTAATCAATTGTTAAGGCTTATTGATTTAAGATGTTTTCGAAATGCTAATAAGCCTTGAATATATGAAATTCAGAGCTTTAAATTGGATAGGAAAAGCGGAAAAATATGTTACATGCTTGCTGCTAGATCTCTCACCATTCATTGCGGTGATGGTGGCAGTGATGATAGTGATGATAGCGGTGATTATGACATTGATAAAGAGTGGATTCATATGAATGATTCCAGGTTAGTTTTTTTTTTTTTTTTTCCTTGTGTTAATGATACTATTATTTCCCATCACTTAAAACCCAATATGGCTTCATTAACATAATCAACAGTTCTTGTCAAAAAAAAAAAAAAAAAACATAATCAACAGTTCTAAACCTTTATGAATACTAAATTGGGTTAGATATGTAATTGGTCCCTCTAAATATATCAATATTTGATTTTAGTGCTCCAAAAATATTCTTTTAGGTTTTTGGTTCCTCCAAAAAATTTCATCCATGAAATTAGTCCCTGTTCTCAATGTAGAGCAGTGACTAATTTCATAGATGAAATTTTCTAAAGGGAACAAAACCTAAGAAATATTTTAGGGGGACTAAAATCAAATGTTGGTATATTTAAGGGGACTATTTACTTATTTAACCCTACTAAATTTGTGAATCAATTTTTATGGGCTTGAATTATTCTTTTTCACATATATGTCTGTTGGCAAAGAAATTTTCTGCAACTTTTAAATCATGCCATAGATTAATATGTCTCAAAATCCATATATAGCTTCTCTCAAAATGAGAAGGCTACATATGGTTTGAGTGATAACATGGGCAGAGCTACTCATATTTTGGGAGGGGCTCCTGTCCATGCCGAGTCTTCTAACAGAATTCTAGTATATAATATATAGTGTGGAGTATTATGATAGTCCAGTGAATATTAATGTTATATGGACAATTATGATAGTCTAATGAATATTTATTTGCATAGTGTGGAGTATTAATGATACATATATTGTATTTTTGTTAAAATATTTTCCATTGTCATGCTTCTAACTTTCTTCCAAAAAAAATTATAAGTAAATACTTCTCGCTAGACTATTCAAACCCAAAGTTAACTTACACATGAATCTGAAGCTCAATATTAGTGATGGGTCCCCTCTCTGATAATTCTCTTTTAATAGATAATAAACAATATAACTTATTAATTGAGAAGTTTCTCAATATGCTTCGTTTACAACTTCCAAACTTTAGTTGATGAGCCTACATTATTATCGTATCTACACTTGTATTATACTCCATATGTGATGGTATGAATCACTTTCATCTTTTTTCAAAATTCTTGTATTCTTGTCTTTGCAATTATTTACAGGTTTCCTGAAGTCGCTAAGCTTTGCATTGTGTTCTCGCTTAAAATTCGTGGAGTGATCAACACTTTTTCCTTGTCCCGAAATACTCGGTATGCGGCTTATCTTGTGTTCAAGATGATTGATGACTATGGATTTGAGAATGAACCTATGGACCTATCAATTGATGTAGAAGGTGGCCATTGTAGCACTAAATCCGTCTGTTTGGATCCAAACGCGTCACGCAATAAAGAAAGAACGTGCTCGAGGAATCACTCCTACAAACGTCGTACTGTTTGCAAATGTCCCGGTCCTAGATGGAGGCCATACCCGAGTGTAATAGGATTGCAGCGCCCTAGTATGAGAAGCGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCAATTCAAGACTTGAAGGAGAAAAAGTCCAAATGAGTGTTGTCGAGAAATTGGAGAGTGGCAATAAGAAGGGAAATTTCTTTCTTGAAGGAATAGAAGTTAGGCCTAAAGGTGGAAAATTAGGCAATATTCATTGA

Protein sequence

>MS.gene058615.t1

MEAAFDEFPEGCISAILSRTTPVDVCRLSLVSKTFLSAADSDAVWNHLLPSDSRLINSIISHSPSLANAPTKKALYLALSDSPIIINHGRKSFKLDRKSGKICYMLAARSLTIHCGDGGSDDSDDSGDYDIDKEWIHMNDSRFPEVAKLCIVFSLKIRGVINTFSLSRNTRYAAYLVFKMIDDYGFENEPMDLSIDVEGGHCSTKSVCLDPNASRNKERTCSRNHSYKRRTVCKCPGPRWRPYPSVIGLQRPSMRSDGWLEIEMGEFNSRLEGEKVQMSVVEKLESGNKKGNFFLEGIEVRPKGGKLGNIH