Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058615.t1 | KEH32832.1 | 90.1 | 304 | 28 | 2 | 1 | 303 | 13 | 315 | 3.40E-152 | 547.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058615.t1 | Q9FLU7 | 36.8 | 302 | 132 | 8 | 5 | 303 | 3 | 248 | 1.9e-39 | 164.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058615.t1 | A0A072UT85 | 90.1 | 304 | 28 | 2 | 1 | 303 | 13 | 315 | 2.4e-152 | 547.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058615.t1 | MTR_3g006850 | 91.118 | 304 | 25 | 2 | 1 | 303 | 13 | 315 | 0.0 | 549 |
MS.gene058615.t1 | MTR_1g100597 | 63.787 | 301 | 79 | 6 | 3 | 303 | 2 | 272 | 1.14e-123 | 355 |
MS.gene058615.t1 | MTR_1g079370 | 59.667 | 300 | 82 | 7 | 5 | 303 | 4 | 265 | 2.84e-112 | 326 |
MS.gene058615.t1 | MTR_1g079180 | 60.667 | 300 | 79 | 6 | 5 | 303 | 4 | 265 | 3.16e-112 | 326 |
MS.gene058615.t1 | MTR_1g079230 | 59.667 | 300 | 90 | 5 | 5 | 303 | 4 | 273 | 8.99e-111 | 322 |
MS.gene058615.t1 | MTR_1g079260 | 57.756 | 303 | 94 | 7 | 3 | 303 | 2 | 272 | 6.78e-108 | 315 |
MS.gene058615.t1 | MTR_1g079460 | 57.616 | 302 | 90 | 5 | 5 | 305 | 4 | 268 | 9.55e-106 | 309 |
MS.gene058615.t1 | MTR_1g079850 | 58.224 | 304 | 100 | 6 | 3 | 303 | 2 | 281 | 1.58e-104 | 307 |
MS.gene058615.t1 | MTR_1g079200 | 58.940 | 302 | 80 | 7 | 5 | 303 | 4 | 264 | 1.14e-103 | 304 |
MS.gene058615.t1 | MTR_3g452600 | 55.776 | 303 | 89 | 6 | 5 | 305 | 10 | 269 | 1.96e-102 | 301 |
MS.gene058615.t1 | MTR_1g100613 | 61.217 | 263 | 75 | 6 | 21 | 282 | 5 | 241 | 4.28e-97 | 286 |
MS.gene058615.t1 | MTR_1g026510 | 54.426 | 305 | 112 | 6 | 3 | 303 | 2 | 283 | 2.23e-95 | 284 |
MS.gene058615.t1 | MTR_1g079380 | 58.000 | 300 | 87 | 7 | 5 | 303 | 4 | 265 | 1.82e-94 | 282 |
MS.gene058615.t1 | MTR_1g079250 | 55.082 | 305 | 105 | 6 | 3 | 303 | 2 | 278 | 8.56e-94 | 280 |
MS.gene058615.t1 | MTR_3g450990 | 50.784 | 319 | 96 | 8 | 5 | 305 | 10 | 285 | 5.29e-88 | 265 |
MS.gene058615.t1 | MTR_2g079100 | 51.656 | 302 | 93 | 9 | 4 | 300 | 8 | 261 | 1.23e-84 | 256 |
MS.gene058615.t1 | MTR_1g079350 | 48.553 | 311 | 113 | 8 | 3 | 303 | 2 | 275 | 5.53e-81 | 246 |
MS.gene058615.t1 | MTR_1g079410 | 45.955 | 309 | 120 | 8 | 2 | 303 | 5 | 273 | 1.30e-75 | 233 |
MS.gene058615.t1 | MTR_1g079340 | 46.154 | 312 | 130 | 7 | 3 | 303 | 41 | 325 | 1.12e-72 | 227 |
MS.gene058615.t1 | MTR_7g096300 | 51.178 | 297 | 94 | 9 | 3 | 293 | 2 | 253 | 2.26e-72 | 237 |
MS.gene058615.t1 | MTR_1g079140 | 44.373 | 311 | 144 | 12 | 5 | 303 | 13 | 306 | 1.21e-64 | 206 |
MS.gene058615.t1 | MTR_1g079400 | 40.065 | 307 | 143 | 8 | 2 | 303 | 9 | 279 | 2.40e-58 | 189 |
MS.gene058615.t1 | MTR_1g076870 | 66.000 | 150 | 31 | 5 | 143 | 285 | 2 | 138 | 3.78e-58 | 183 |
MS.gene058615.t1 | MTR_1g078470 | 49.048 | 210 | 68 | 4 | 94 | 303 | 14 | 184 | 4.63e-52 | 169 |
MS.gene058615.t1 | MTR_7g112550 | 39.735 | 302 | 148 | 8 | 8 | 303 | 10 | 283 | 8.62e-51 | 169 |
MS.gene058615.t1 | MTR_1g079350 | 56.494 | 154 | 50 | 3 | 3 | 152 | 2 | 142 | 1.03e-45 | 154 |
MS.gene058615.t1 | MTR_1g083580 | 34.754 | 305 | 162 | 8 | 5 | 303 | 8 | 281 | 4.03e-43 | 149 |
MS.gene058615.t1 | MTR_1g079240 | 42.152 | 223 | 81 | 5 | 84 | 303 | 2 | 179 | 4.28e-41 | 141 |
MS.gene058615.t1 | MTR_7g112560 | 33.221 | 298 | 153 | 9 | 8 | 303 | 4 | 257 | 1.72e-40 | 142 |
MS.gene058615.t1 | MTR_7g096310 | 53.147 | 143 | 48 | 3 | 61 | 201 | 38 | 163 | 3.85e-35 | 125 |
MS.gene058615.t1 | MTR_4g023570 | 32.119 | 302 | 139 | 9 | 8 | 307 | 4 | 241 | 7.19e-35 | 127 |
MS.gene058615.t1 | MTR_2g042540 | 62.857 | 105 | 36 | 2 | 4 | 107 | 3 | 105 | 2.96e-34 | 122 |
MS.gene058615.t1 | MTR_3g058640 | 51.200 | 125 | 36 | 1 | 143 | 267 | 7 | 106 | 1.54e-32 | 116 |
MS.gene058615.t1 | MTR_1g078460 | 65.909 | 88 | 27 | 1 | 4 | 91 | 66 | 150 | 5.42e-31 | 114 |
MS.gene058615.t1 | MTR_1g079210 | 48.507 | 134 | 57 | 3 | 144 | 276 | 7 | 129 | 8.38e-29 | 108 |
MS.gene058615.t1 | MTR_1g079130 | 38.424 | 203 | 107 | 7 | 105 | 303 | 1 | 189 | 1.73e-27 | 106 |
MS.gene058615.t1 | MTR_0113s0040 | 26.636 | 214 | 128 | 6 | 2 | 201 | 19 | 217 | 3.83e-16 | 77.4 |
MS.gene058615.t1 | MTR_7g103380 | 22.973 | 222 | 146 | 5 | 1 | 210 | 15 | 223 | 6.23e-15 | 74.3 |
MS.gene058615.t1 | MTR_1g079220 | 44.318 | 88 | 24 | 2 | 180 | 267 | 1 | 63 | 5.57e-14 | 66.6 |
MS.gene058615.t1 | MTR_1g101390 | 30.968 | 155 | 90 | 5 | 7 | 159 | 30 | 169 | 2.62e-13 | 69.3 |
MS.gene058615.t1 | MTR_4g102770 | 29.936 | 157 | 94 | 4 | 7 | 161 | 21 | 163 | 3.53e-13 | 68.9 |
MS.gene058615.t1 | MTR_0002s0020 | 24.561 | 228 | 140 | 7 | 1 | 210 | 18 | 231 | 4.75e-12 | 65.9 |
MS.gene058615.t1 | MTR_1g079390 | 62.000 | 50 | 17 | 2 | 249 | 298 | 8 | 55 | 1.20e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058615.t1 | AT2G02360 | 35.855 | 304 | 144 | 8 | 3 | 302 | 12 | 268 | 7.27e-50 | 167 |
MS.gene058615.t1 | AT1G80110 | 37.540 | 309 | 126 | 10 | 6 | 302 | 2 | 255 | 6.40e-49 | 164 |
MS.gene058615.t1 | AT1G56250 | 38.614 | 303 | 154 | 10 | 8 | 303 | 4 | 281 | 1.84e-45 | 155 |
MS.gene058615.t1 | AT2G02230 | 32.919 | 322 | 173 | 10 | 5 | 303 | 32 | 333 | 6.03e-45 | 156 |
MS.gene058615.t1 | AT2G02240 | 34.106 | 302 | 153 | 8 | 3 | 302 | 59 | 316 | 5.64e-42 | 147 |
MS.gene058615.t1 | AT2G02350 | 33.224 | 304 | 156 | 9 | 3 | 302 | 22 | 282 | 8.51e-42 | 146 |
MS.gene058615.t1 | AT1G56240 | 37.086 | 302 | 158 | 10 | 8 | 302 | 4 | 280 | 1.38e-41 | 145 |
MS.gene058615.t1 | AT1G09155 | 36.570 | 309 | 152 | 11 | 8 | 303 | 3 | 280 | 1.45e-41 | 145 |
MS.gene058615.t1 | AT2G02340 | 32.686 | 309 | 158 | 10 | 3 | 302 | 34 | 301 | 6.73e-41 | 144 |
MS.gene058615.t1 | AT2G02250 | 32.000 | 300 | 159 | 9 | 5 | 302 | 47 | 303 | 1.49e-39 | 141 |
MS.gene058615.t1 | AT2G02310 | 31.803 | 305 | 161 | 10 | 3 | 303 | 43 | 304 | 1.60e-38 | 138 |
MS.gene058615.t1 | AT2G02320 | 32.154 | 311 | 161 | 11 | 4 | 309 | 39 | 304 | 4.95e-35 | 129 |
MS.gene058615.t1 | AT5G24560 | 36.816 | 201 | 98 | 7 | 5 | 201 | 3 | 178 | 3.56e-31 | 116 |
MS.gene058615.t1 | AT2G02300 | 30.323 | 310 | 147 | 10 | 3 | 303 | 32 | 281 | 4.44e-29 | 113 |
MS.gene058615.t1 | AT2G02350 | 30.233 | 172 | 89 | 5 | 135 | 302 | 21 | 165 | 8.38e-16 | 74.3 |
MS.gene058615.t1 | AT3G53000 | 24.891 | 229 | 145 | 7 | 1 | 217 | 17 | 230 | 1.27e-14 | 73.6 |
MS.gene058615.t1 | AT3G61060 | 27.097 | 155 | 96 | 5 | 7 | 159 | 27 | 166 | 8.97e-14 | 70.9 |
MS.gene058615.t1 | AT1G63090 | 25.778 | 225 | 133 | 9 | 1 | 209 | 22 | 228 | 4.55e-13 | 68.9 |
MS.gene058615.t1 | AT3G61060 | 25.161 | 155 | 100 | 4 | 7 | 159 | 27 | 167 | 6.59e-13 | 68.2 |
MS.gene058615.t1 | AT1G12710 | 24.107 | 224 | 138 | 8 | 1 | 209 | 24 | 230 | 4.87e-12 | 65.9 |
MS.gene058615.t1 | AT5G52120 | 24.336 | 226 | 138 | 7 | 4 | 210 | 20 | 231 | 5.40e-12 | 65.9 |
Find 81 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAATTCAGAGCTTTAAAT+TGG | 0.211874 | 3.1:+2472606 | MS.gene058615:intron |
TCTTTATTGCGTGACGCGTT+TGG | 0.271431 | 3.1:-2474089 | None:intergenic |
CTGCTGATTCCGACGCTGTT+TGG | 0.274846 | 3.1:+2472318 | MS.gene058615:CDS |
AGCCGCATACCGAGTATTTC+GGG | 0.278643 | 3.1:-2473958 | None:intergenic |
AGGCCTAAAGGTGGAAAATT+AGG | 0.306982 | 3.1:+2474359 | MS.gene058615:CDS |
AATGAGTGTTGTCGAGAAAT+TGG | 0.309455 | 3.1:+2474289 | MS.gene058615:CDS |
TGCCAACGCTCCCACCAAAA+AGG | 0.326568 | 3.1:+2472403 | MS.gene058615:CDS |
AGGCCATACCCGAGTGTAAT+AGG | 0.331870 | 3.1:+2474179 | MS.gene058615:CDS |
CACCCATCGCTTCTCATACT+AGG | 0.340594 | 3.1:-2474212 | None:intergenic |
ATTTCTCGACAACACTCATT+TGG | 0.340801 | 3.1:-2474286 | None:intergenic |
CGACCATGATTGATGATGAT+TGG | 0.342960 | 3.1:-2472452 | None:intergenic |
AAGCCGCATACCGAGTATTT+CGG | 0.344265 | 3.1:-2473959 | None:intergenic |
GCAAACAGTACGACGTTTGT+AGG | 0.364009 | 3.1:-2474135 | None:intergenic |
ATGCAAAGCTTAGCGACTTC+AGG | 0.370688 | 3.1:-2473888 | None:intergenic |
AAGGGAAATTTCTTTCTTGA+AGG | 0.378106 | 3.1:+2474326 | MS.gene058615:CDS |
TTCAAGATGATTGATGACTA+TGG | 0.395723 | 3.1:+2473990 | MS.gene058615:CDS |
TAGCACTAAATCCGTCTGTT+TGG | 0.402920 | 3.1:+2474064 | MS.gene058615:CDS |
TTCTTGAAGGAATAGAAGTT+AGG | 0.408541 | 3.1:+2474339 | MS.gene058615:CDS |
GTGTTCTCGCTTAAAATTCG+TGG | 0.423796 | 3.1:+2473912 | MS.gene058615:CDS |
GAGAGTCTGCAAACATCAAC+AGG | 0.436594 | 3.1:-2472269 | None:intergenic |
GGATTCATATGAATGATTCC+AGG | 0.439610 | 3.1:+2472746 | MS.gene058615:CDS |
ATGGCTGAGATGCATCCTTC+CGG | 0.445419 | 3.1:-2472230 | None:intergenic |
TTGGAACCACTTGCTCCCTT+CGG | 0.446640 | 3.1:+2472337 | MS.gene058615:CDS |
GACCATGATTGATGATGATT+GGG | 0.448096 | 3.1:-2472451 | None:intergenic |
GCAAATGTCCCGGTCCTAGA+TGG | 0.460524 | 3.1:+2474156 | MS.gene058615:CDS |
CACCTTCTACATCAATTGAT+AGG | 0.470721 | 3.1:-2474034 | None:intergenic |
CTCGGGTATGGCCTCCATCT+AGG | 0.471641 | 3.1:-2474170 | None:intergenic |
TATCAGATAGAGCGAGATAG+AGG | 0.473412 | 3.1:-2472427 | None:intergenic |
CGCCCTAGTATGAGAAGCGA+TGG | 0.476146 | 3.1:+2474209 | MS.gene058615:CDS |
ATTGGAGAGTGGCAATAAGA+AGG | 0.476949 | 3.1:+2474307 | MS.gene058615:CDS |
GACCTATCAATTGATGTAGA+AGG | 0.477578 | 3.1:+2474032 | MS.gene058615:CDS |
CGCTGCAATCCTATTACACT+CGG | 0.477809 | 3.1:-2474188 | None:intergenic |
TTGGAGAGTGGCAATAAGAA+GGG | 0.493842 | 3.1:+2474308 | MS.gene058615:CDS |
GATGATAGAGTTAATGAGAC+GGG | 0.495408 | 3.1:-2472363 | None:intergenic |
CTCACCATTCATTGCGGTGA+TGG | 0.500991 | 3.1:+2472673 | MS.gene058615:CDS |
GCCACCATCACCGCAATGAA+TGG | 0.504191 | 3.1:-2472677 | None:intergenic |
ACCCATCGCTTCTCATACTA+GGG | 0.511060 | 3.1:-2474211 | None:intergenic |
ATTATGACATTGATAAAGAG+TGG | 0.514642 | 3.1:+2472725 | MS.gene058615:CDS |
GTATGGCCTCCATCTAGGAC+CGG | 0.515958 | 3.1:-2474165 | None:intergenic |
GGAATAGAAGTTAGGCCTAA+AGG | 0.521180 | 3.1:+2474347 | MS.gene058615:CDS |
ACATCAATTGATAGGTCCAT+AGG | 0.521400 | 3.1:-2474026 | None:intergenic |
GTGGGAGCGTTGGCAAGGGA+AGG | 0.528441 | 3.1:-2472395 | None:intergenic |
TGGGTGGTTGGAGATTGAGA+TGG | 0.532103 | 3.1:+2474229 | MS.gene058615:CDS |
GAGTTCAATTCAAGACTTGA+AGG | 0.533035 | 3.1:+2474254 | MS.gene058615:CDS |
AGCCCAATCATCATCAATCA+TGG | 0.539989 | 3.1:+2472449 | MS.gene058615:CDS |
TGGATTTGAGAATGAACCTA+TGG | 0.540096 | 3.1:+2474010 | MS.gene058615:CDS |
GGGTGGTTGGAGATTGAGAT+GGG | 0.540728 | 3.1:+2474230 | MS.gene058615:CDS |
TATGAGAAGCGATGGGTGGT+TGG | 0.542058 | 3.1:+2474217 | MS.gene058615:CDS |
AATCCTATTACACTCGGGTA+TGG | 0.542614 | 3.1:-2474182 | None:intergenic |
ACCATTCATTGCGGTGATGG+TGG | 0.550353 | 3.1:+2472676 | MS.gene058615:CDS |
TTCAGAGCTTTAAATTGGAT+AGG | 0.554237 | 3.1:+2472611 | MS.gene058615:intron |
CGTCGGAATCAGCAGCAGAA+AGG | 0.559078 | 3.1:-2472310 | None:intergenic |
TTTAAATTGGATAGGAAAAG+CGG | 0.567617 | 3.1:+2472619 | MS.gene058615:CDS |
TTTCCTTGTCCCGAAATACT+CGG | 0.571284 | 3.1:+2473949 | MS.gene058615:CDS |
AGGAGTCGTACGAGACAGAA+TGG | 0.572229 | 3.1:-2472249 | None:intergenic |
AAGGAAAGTCTTAGAAACAA+GGG | 0.585673 | 3.1:-2472291 | None:intergenic |
AAAGGAAAGTCTTAGAAACA+AGG | 0.587344 | 3.1:-2472292 | None:intergenic |
CATCATCAATCATGGTCGAA+AGG | 0.589028 | 3.1:+2472457 | MS.gene058615:CDS |
TTTGGTGGGAGCGTTGGCAA+GGG | 0.595797 | 3.1:-2472399 | None:intergenic |
AGATGATAGAGTTAATGAGA+CGG | 0.608457 | 3.1:-2472364 | None:intergenic |
CGCGTTTGGATCCAAACAGA+CGG | 0.612046 | 3.1:-2474075 | None:intergenic |
GGGAATCCGAAGGGAGCAAG+TGG | 0.615736 | 3.1:-2472343 | None:intergenic |
ATAAAGAAAGAACGTGCTCG+AGG | 0.617489 | 3.1:+2474105 | MS.gene058615:CDS |
CGTACTGTTTGCAAATGTCC+CGG | 0.619734 | 3.1:+2474146 | MS.gene058615:CDS |
TATGGCCTCCATCTAGGACC+GGG | 0.622013 | 3.1:-2474164 | None:intergenic |
AGACGGATTTAGTGCTACAA+TGG | 0.632435 | 3.1:-2474058 | None:intergenic |
GTCCCGAAATACTCGGTATG+CGG | 0.633122 | 3.1:+2473956 | MS.gene058615:CDS |
ATCAGATAGAGCGAGATAGA+GGG | 0.636487 | 3.1:-2472426 | None:intergenic |
ATAGAAGTTAGGCCTAAAGG+TGG | 0.643863 | 3.1:+2474350 | MS.gene058615:CDS |
TAATGAGACGGGAATCCGAA+GGG | 0.645707 | 3.1:-2472352 | None:intergenic |
ATACCGAGTATTTCGGGACA+AGG | 0.650354 | 3.1:-2473952 | None:intergenic |
AATGTCCCGGTCCTAGATGG+AGG | 0.653167 | 3.1:+2474159 | MS.gene058615:CDS |
CTATCAATTGATGTAGAAGG+TGG | 0.658482 | 3.1:+2474035 | MS.gene058615:CDS |
CAAGTGGTTCCAAACAGCGT+CGG | 0.661303 | 3.1:-2472327 | None:intergenic |
TTAATGAGACGGGAATCCGA+AGG | 0.663113 | 3.1:-2472353 | None:intergenic |
GCCCTAGTATGAGAAGCGAT+GGG | 0.672039 | 3.1:+2474210 | MS.gene058615:CDS |
GTTGTCGAGAAATTGGAGAG+TGG | 0.680092 | 3.1:+2474296 | MS.gene058615:CDS |
CTAGTATGAGAAGCGATGGG+TGG | 0.686490 | 3.1:+2474213 | MS.gene058615:CDS |
GCTGCAATCCTATTACACTC+GGG | 0.696916 | 3.1:-2474187 | None:intergenic |
AGATCTCTCACCATTCATTG+CGG | 0.710070 | 3.1:+2472667 | MS.gene058615:CDS |
AGTGATGATAGTGATGATAG+CGG | 0.780024 | 3.1:+2472700 | MS.gene058615:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTTTTAATCAATTGTTA+AGG | + | chr3.1:2472536-2472555 | MS.gene058615:intron | 10.0% |
!! | AAAAAAAAAAAAAACTAACC+TGG | - | chr3.1:2472767-2472786 | None:intergenic | 15.0% |
!! | CAAATATTGATATATTTAGA+GGG | - | chr3.1:2472947-2472966 | None:intergenic | 15.0% |
!! | TCAAATATTGATATATTTAG+AGG | - | chr3.1:2472948-2472967 | None:intergenic | 15.0% |
!!! | AAAACCTAAAAGAATATTTT+TGG | - | chr3.1:2472981-2473000 | None:intergenic | 15.0% |
!!! | AAAACCTAAGAAATATTTTA+GGG | + | chr3.1:2473094-2473113 | MS.gene058615:intron | 15.0% |
!!! | AAAATATTCTTTTAGGTTTT+TGG | + | chr3.1:2472981-2473000 | MS.gene058615:intron | 15.0% |
!!! | AATTTGTGAATCAATTTTTA+TGG | + | chr3.1:2473175-2473194 | MS.gene058615:intron | 15.0% |
!!! | ATTTGTGAATCAATTTTTAT+GGG | + | chr3.1:2473176-2473195 | MS.gene058615:intron | 15.0% |
!! | AACCTTTATGAATACTAAAT+TGG | + | chr3.1:2472903-2472922 | MS.gene058615:intron | 20.0% |
!! | ACCTTTATGAATACTAAATT+GGG | + | chr3.1:2472904-2472923 | MS.gene058615:intron | 20.0% |
!! | ATAATAGTATCATTAACACA+AGG | - | chr3.1:2472793-2472812 | None:intergenic | 20.0% |
!! | ATCAAATGTTGGTATATTTA+AGG | + | chr3.1:2473125-2473144 | MS.gene058615:intron | 20.0% |
!! | CAGTGAATATTAATGTTATA+TGG | + | chr3.1:2473443-2473462 | MS.gene058615:intron | 20.0% |
!! | CATATAACATTAATATTCAC+TGG | - | chr3.1:2473445-2473464 | None:intergenic | 20.0% |
!! | CCTAATATTTAAGAAATTCA+CGG | - | chr3.1:2472498-2472517 | None:intergenic | 20.0% |
!! | CTAGTATATAATATATAGTG+TGG | + | chr3.1:2473405-2473424 | MS.gene058615:intron | 20.0% |
!! | TCAAATGTTGGTATATTTAA+GGG | + | chr3.1:2473126-2473145 | MS.gene058615:intron | 20.0% |
!!! | AAACCTAAGAAATATTTTAG+GGG | + | chr3.1:2473095-2473114 | MS.gene058615:intron | 20.0% |
!!! | AATTGATTCACAAATTTAGT+AGG | - | chr3.1:2473171-2473190 | None:intergenic | 20.0% |
!!! | ATTGATTCACAAATTTAGTA+GGG | - | chr3.1:2473170-2473189 | None:intergenic | 20.0% |
!!! | ATTTCATGGATGAAATTTTT+TGG | - | chr3.1:2473012-2473031 | None:intergenic | 20.0% |
!!! | CAAAACCTAAGAAATATTTT+AGG | + | chr3.1:2473093-2473112 | MS.gene058615:intron | 20.0% |
!!! | CATAGATGAAATTTTCTAAA+GGG | + | chr3.1:2473068-2473087 | MS.gene058615:intron | 20.0% |
!!! | TCATAGATGAAATTTTCTAA+AGG | + | chr3.1:2473067-2473086 | MS.gene058615:intron | 20.0% |
!!! | TTTTGAGACATATTAATCTA+TGG | - | chr3.1:2473268-2473287 | None:intergenic | 20.0% |
! | ACCCAATTTAGTATTCATAA+AGG | - | chr3.1:2472908-2472927 | None:intergenic | 25.0% |
! | ATTATGACATTGATAAAGAG+TGG | + | chr3.1:2472725-2472744 | MS.gene058615:CDS | 25.0% |
! | ATTCATGTGTAAGTTAACTT+TGG | - | chr3.1:2473623-2473642 | None:intergenic | 25.0% |
! | CAAATGTTGGTATATTTAAG+GGG | + | chr3.1:2473127-2473146 | MS.gene058615:intron | 25.0% |
! | CCGTGAATTTCTTAAATATT+AGG | + | chr3.1:2472495-2472514 | MS.gene058615:intron | 25.0% |
! | CTCTGAATTTCATATATTCA+AGG | - | chr3.1:2472598-2472617 | None:intergenic | 25.0% |
! | GAATATTTATTTGCATAGTG+TGG | + | chr3.1:2473485-2473504 | MS.gene058615:intron | 25.0% |
! | TAAAAGAGAATTATCAGAGA+GGG | - | chr3.1:2473672-2473691 | None:intergenic | 25.0% |
! | TATGTTAATGAAGCCATATT+GGG | - | chr3.1:2472832-2472851 | None:intergenic | 25.0% |
! | TGTAGATACGATAATAATGT+AGG | - | chr3.1:2473777-2473796 | None:intergenic | 25.0% |
! | TTAAAAGAGAATTATCAGAG+AGG | - | chr3.1:2473673-2473692 | None:intergenic | 25.0% |
! | TTATGTTAATGAAGCCATAT+TGG | - | chr3.1:2472833-2472852 | None:intergenic | 25.0% |
! | TTCATGTGTAAGTTAACTTT+GGG | - | chr3.1:2473622-2473641 | None:intergenic | 25.0% |
! | TTGTCTTTGCAATTATTTAC+AGG | + | chr3.1:2473862-2473881 | MS.gene058615:intron | 25.0% |
! | TTTAAATTGGATAGGAAAAG+CGG | + | chr3.1:2472619-2472638 | MS.gene058615:CDS | 25.0% |
!! | AATTGGGTTAGATATGTAAT+TGG | + | chr3.1:2472920-2472939 | MS.gene058615:intron | 25.0% |
!! | TGCTCCAAAAATATTCTTTT+AGG | + | chr3.1:2472974-2472993 | MS.gene058615:intron | 25.0% |
!! | TTTTTCACATATATGTCTGT+TGG | + | chr3.1:2473211-2473230 | MS.gene058615:intron | 25.0% |
!!! | AACCTAAGAAATATTTTAGG+GGG | + | chr3.1:2473096-2473115 | MS.gene058615:intron | 25.0% |
!!! | ATTTTGAGAGAAGCTATATA+TGG | - | chr3.1:2473292-2473311 | None:intergenic | 25.0% |
!!! | TGAAATTCAGAGCTTTAAAT+TGG | + | chr3.1:2472606-2472625 | MS.gene058615:intron | 25.0% |
AAAAGAGAATTATCAGAGAG+GGG | - | chr3.1:2473671-2473690 | None:intergenic | 30.0% | |
AAAGGAAAGTCTTAGAAACA+AGG | - | chr3.1:2472295-2472314 | None:intergenic | 30.0% | |
AAGGAAAGTCTTAGAAACAA+GGG | - | chr3.1:2472294-2472313 | None:intergenic | 30.0% | |
AAGGGAAATTTCTTTCTTGA+AGG | + | chr3.1:2474326-2474345 | MS.gene058615:CDS | 30.0% | |
AGAAATTCACGGTTATGAAA+AGG | - | chr3.1:2472487-2472506 | None:intergenic | 30.0% | |
AGATGATAGAGTTAATGAGA+CGG | - | chr3.1:2472367-2472386 | None:intergenic | 30.0% | |
ATATGGTTTGAGTGATAACA+TGG | + | chr3.1:2473323-2473342 | MS.gene058615:intron | 30.0% | |
GTATTATACTCCATATGTGA+TGG | + | chr3.1:2473800-2473819 | MS.gene058615:intron | 30.0% | |
TAGAATTCTGTTAGAAGACT+CGG | - | chr3.1:2473388-2473407 | None:intergenic | 30.0% | |
TATGGTTTGAGTGATAACAT+GGG | + | chr3.1:2473324-2473343 | MS.gene058615:intron | 30.0% | |
TGAAGCTCAATATTAGTGAT+GGG | + | chr3.1:2473644-2473663 | MS.gene058615:intron | 30.0% | |
TTCTTGAAGGAATAGAAGTT+AGG | + | chr3.1:2474339-2474358 | MS.gene058615:CDS | 30.0% | |
! | TTCAAGATGATTGATGACTA+TGG | + | chr3.1:2473990-2474009 | MS.gene058615:CDS | 30.0% |
!! | TTCAGAGCTTTAAATTGGAT+AGG | + | chr3.1:2472611-2472630 | MS.gene058615:intron | 30.0% |
!!! | CATATTGGGTTTTAAGTGAT+GGG | - | chr3.1:2472818-2472837 | None:intergenic | 30.0% |
!!! | TCATGGATGAAATTTTTTGG+AGG | - | chr3.1:2473009-2473028 | None:intergenic | 30.0% |
ACATCAATTGATAGGTCCAT+AGG | - | chr3.1:2474029-2474048 | None:intergenic | 35.0% | |
ATTTCTCGACAACACTCATT+TGG | - | chr3.1:2474289-2474308 | None:intergenic | 35.0% | |
CAAAATGAGAAGGCTACATA+TGG | + | chr3.1:2473306-2473325 | MS.gene058615:intron | 35.0% | |
CACCTTCTACATCAATTGAT+AGG | - | chr3.1:2474037-2474056 | None:intergenic | 35.0% | |
CCATCACTTAAAACCCAATA+TGG | + | chr3.1:2472816-2472835 | MS.gene058615:intron | 35.0% | |
CTATCAATTGATGTAGAAGG+TGG | + | chr3.1:2474035-2474054 | MS.gene058615:CDS | 35.0% | |
CTGAAGCTCAATATTAGTGA+TGG | + | chr3.1:2473643-2473662 | MS.gene058615:intron | 35.0% | |
GACCTATCAATTGATGTAGA+AGG | + | chr3.1:2474032-2474051 | MS.gene058615:CDS | 35.0% | |
GAGTTCAATTCAAGACTTGA+AGG | + | chr3.1:2474254-2474273 | MS.gene058615:CDS | 35.0% | |
GATGATAGAGTTAATGAGAC+GGG | - | chr3.1:2472366-2472385 | None:intergenic | 35.0% | |
GGATTCATATGAATGATTCC+AGG | + | chr3.1:2472746-2472765 | MS.gene058615:CDS | 35.0% | |
GTCCCCCTAAAATATTTCTT+AGG | - | chr3.1:2473101-2473120 | None:intergenic | 35.0% | |
GTGATTCATACCATCACATA+TGG | - | chr3.1:2473813-2473832 | None:intergenic | 35.0% | |
TAGCTTCTCTCAAAATGAGA+AGG | + | chr3.1:2473296-2473315 | MS.gene058615:intron | 35.0% | |
TAGGCTCATCAACTAAAGTT+TGG | - | chr3.1:2473758-2473777 | None:intergenic | 35.0% | |
TGGATTTGAGAATGAACCTA+TGG | + | chr3.1:2474010-2474029 | MS.gene058615:CDS | 35.0% | |
! | AATGAGTGTTGTCGAGAAAT+TGG | + | chr3.1:2474289-2474308 | MS.gene058615:CDS | 35.0% |
! | AGTGATGATAGTGATGATAG+CGG | + | chr3.1:2472700-2472719 | MS.gene058615:CDS | 35.0% |
! | GAAAGTTAGAAGCATGACAA+TGG | - | chr3.1:2473553-2473572 | None:intergenic | 35.0% |
! | TTGCCTAATTTTCCACCTTT+AGG | - | chr3.1:2474365-2474384 | None:intergenic | 35.0% |
!! | GACCATGATTGATGATGATT+GGG | - | chr3.1:2472454-2472473 | None:intergenic | 35.0% |
!!! | CCATATTGGGTTTTAAGTGA+TGG | - | chr3.1:2472819-2472838 | None:intergenic | 35.0% |
AATCCTATTACACTCGGGTA+TGG | - | chr3.1:2474185-2474204 | None:intergenic | 40.0% | |
ACTGCTCTACATTGAGAACA+GGG | - | chr3.1:2473039-2473058 | None:intergenic | 40.0% | |
AGATCTCTCACCATTCATTG+CGG | + | chr3.1:2472667-2472686 | MS.gene058615:CDS | 40.0% | |
AGCCCAATCATCATCAATCA+TGG | + | chr3.1:2472449-2472468 | MS.gene058615:CDS | 40.0% | |
AGGCCTAAAGGTGGAAAATT+AGG | + | chr3.1:2474359-2474378 | MS.gene058615:CDS | 40.0% | |
ATAAAGAAAGAACGTGCTCG+AGG | + | chr3.1:2474105-2474124 | MS.gene058615:CDS | 40.0% | |
ATAGAAGTTAGGCCTAAAGG+TGG | + | chr3.1:2474350-2474369 | MS.gene058615:CDS | 40.0% | |
ATCAGATAGAGCGAGATAGA+GGG | - | chr3.1:2472429-2472448 | None:intergenic | 40.0% | |
ATTGGAGAGTGGCAATAAGA+AGG | + | chr3.1:2474307-2474326 | MS.gene058615:CDS | 40.0% | |
CATCATCAATCATGGTCGAA+AGG | + | chr3.1:2472457-2472476 | MS.gene058615:CDS | 40.0% | |
GAGAACAGGGACTAATTTCA+TGG | - | chr3.1:2473026-2473045 | None:intergenic | 40.0% | |
GGAATAGAAGTTAGGCCTAA+AGG | + | chr3.1:2474347-2474366 | MS.gene058615:CDS | 40.0% | |
GGGGGACTAAAATCAAATGT+TGG | + | chr3.1:2473114-2473133 | MS.gene058615:intron | 40.0% | |
GTGTTCTCGCTTAAAATTCG+TGG | + | chr3.1:2473912-2473931 | MS.gene058615:CDS | 40.0% | |
TAGCACTAAATCCGTCTGTT+TGG | + | chr3.1:2474064-2474083 | MS.gene058615:CDS | 40.0% | |
TATCAGATAGAGCGAGATAG+AGG | - | chr3.1:2472430-2472449 | None:intergenic | 40.0% | |
TTGGAGAGTGGCAATAAGAA+GGG | + | chr3.1:2474308-2474327 | MS.gene058615:CDS | 40.0% | |
TTTCCTTGTCCCGAAATACT+CGG | + | chr3.1:2473949-2473968 | MS.gene058615:CDS | 40.0% | |
! | AGACGGATTTAGTGCTACAA+TGG | - | chr3.1:2474061-2474080 | None:intergenic | 40.0% |
! | GCTTTTGATGAATTTCCGGA+AGG | + | chr3.1:2472215-2472234 | MS.gene058615:CDS | 40.0% |
! | GGCAGAGCTACTCATATTTT+GGG | + | chr3.1:2473345-2473364 | MS.gene058615:intron | 40.0% |
! | GGCAGCTTTTGATGAATTTC+CGG | + | chr3.1:2472211-2472230 | MS.gene058615:CDS | 40.0% |
!! | AGAGCTACTCATATTTTGGG+AGG | + | chr3.1:2473348-2473367 | MS.gene058615:intron | 40.0% |
!! | AGCTACTCATATTTTGGGAG+GGG | + | chr3.1:2473350-2473369 | MS.gene058615:intron | 40.0% |
!! | CGACCATGATTGATGATGAT+TGG | - | chr3.1:2472455-2472474 | None:intergenic | 40.0% |
!! | GAGCTACTCATATTTTGGGA+GGG | + | chr3.1:2473349-2473368 | MS.gene058615:intron | 40.0% |
AAGCCGCATACCGAGTATTT+CGG | - | chr3.1:2473962-2473981 | None:intergenic | 45.0% | |
ACCCATCGCTTCTCATACTA+GGG | - | chr3.1:2474214-2474233 | None:intergenic | 45.0% | |
ATACCGAGTATTTCGGGACA+AGG | - | chr3.1:2473955-2473974 | None:intergenic | 45.0% | |
ATGCAAAGCTTAGCGACTTC+AGG | - | chr3.1:2473891-2473910 | None:intergenic | 45.0% | |
CACTGCTCTACATTGAGAAC+AGG | - | chr3.1:2473040-2473059 | None:intergenic | 45.0% | |
CGCTGCAATCCTATTACACT+CGG | - | chr3.1:2474191-2474210 | None:intergenic | 45.0% | |
CGTACTGTTTGCAAATGTCC+CGG | + | chr3.1:2474146-2474165 | MS.gene058615:CDS | 45.0% | |
GAGAGTCTGCAAACATCAAC+AGG | - | chr3.1:2472272-2472291 | None:intergenic | 45.0% | |
GCAAACAGTACGACGTTTGT+AGG | - | chr3.1:2474138-2474157 | None:intergenic | 45.0% | |
GCTGCAATCCTATTACACTC+GGG | - | chr3.1:2474190-2474209 | None:intergenic | 45.0% | |
GTTGTCGAGAAATTGGAGAG+TGG | + | chr3.1:2474296-2474315 | MS.gene058615:CDS | 45.0% | |
TAATGAGACGGGAATCCGAA+GGG | - | chr3.1:2472355-2472374 | None:intergenic | 45.0% | |
TCTTTATTGCGTGACGCGTT+TGG | - | chr3.1:2474092-2474111 | None:intergenic | 45.0% | |
TTAATGAGACGGGAATCCGA+AGG | - | chr3.1:2472356-2472375 | None:intergenic | 45.0% | |
TTCTGTTAGAAGACTCGGCA+TGG | - | chr3.1:2473383-2473402 | None:intergenic | 45.0% | |
! | GGGCAGAGCTACTCATATTT+TGG | + | chr3.1:2473344-2473363 | MS.gene058615:intron | 45.0% |
!! | AGATAGAGGGCCTTTTTGGT+GGG | - | chr3.1:2472416-2472435 | None:intergenic | 45.0% |
!!! | TATTTACTTATAATTTTTTT+TGG | - | chr3.1:2473578-2473597 | None:intergenic | 5.0% |
AGCCGCATACCGAGTATTTC+GGG | - | chr3.1:2473961-2473980 | None:intergenic | 50.0% | |
AGGAGTCGTACGAGACAGAA+TGG | - | chr3.1:2472252-2472271 | None:intergenic | 50.0% | |
AGGCCATACCCGAGTGTAAT+AGG | + | chr3.1:2474179-2474198 | MS.gene058615:CDS | 50.0% | |
ATGGCTGAGATGCATCCTTC+CGG | - | chr3.1:2472233-2472252 | None:intergenic | 50.0% | |
CAAGTGGTTCCAAACAGCGT+CGG | - | chr3.1:2472330-2472349 | None:intergenic | 50.0% | |
CACCCATCGCTTCTCATACT+AGG | - | chr3.1:2474215-2474234 | None:intergenic | 50.0% | |
CGCGTTTGGATCCAAACAGA+CGG | - | chr3.1:2474078-2474097 | None:intergenic | 50.0% | |
CTAGTATGAGAAGCGATGGG+TGG | + | chr3.1:2474213-2474232 | MS.gene058615:CDS | 50.0% | |
CTCACCATTCATTGCGGTGA+TGG | + | chr3.1:2472673-2472692 | MS.gene058615:CDS | 50.0% | |
GCCCTAGTATGAGAAGCGAT+GGG | + | chr3.1:2474210-2474229 | MS.gene058615:CDS | 50.0% | |
GGGTGGTTGGAGATTGAGAT+GGG | + | chr3.1:2474230-2474249 | MS.gene058615:CDS | 50.0% | |
GTCCCGAAATACTCGGTATG+CGG | + | chr3.1:2473956-2473975 | MS.gene058615:CDS | 50.0% | |
TATGAGAAGCGATGGGTGGT+TGG | + | chr3.1:2474217-2474236 | MS.gene058615:CDS | 50.0% | |
TGGGTGGTTGGAGATTGAGA+TGG | + | chr3.1:2474229-2474248 | MS.gene058615:CDS | 50.0% | |
TTAGAAGACTCGGCATGGAC+AGG | - | chr3.1:2473378-2473397 | None:intergenic | 50.0% | |
TTGGAACCACTTGCTCCCTT+CGG | + | chr3.1:2472337-2472356 | MS.gene058615:CDS | 50.0% | |
! | ACCATTCATTGCGGTGATGG+TGG | + | chr3.1:2472676-2472695 | MS.gene058615:CDS | 50.0% |
! | AGCGAGATAGAGGGCCTTTT+TGG | - | chr3.1:2472420-2472439 | None:intergenic | 50.0% |
! | GAGATAGAGGGCCTTTTTGG+TGG | - | chr3.1:2472417-2472436 | None:intergenic | 50.0% |
AATGTCCCGGTCCTAGATGG+AGG | + | chr3.1:2474159-2474178 | MS.gene058615:CDS | 55.0% | |
CGCCCTAGTATGAGAAGCGA+TGG | + | chr3.1:2474209-2474228 | MS.gene058615:CDS | 55.0% | |
CGTCGGAATCAGCAGCAGAA+AGG | - | chr3.1:2472313-2472332 | None:intergenic | 55.0% | |
GCAAATGTCCCGGTCCTAGA+TGG | + | chr3.1:2474156-2474175 | MS.gene058615:CDS | 55.0% | |
GCCACCATCACCGCAATGAA+TGG | - | chr3.1:2472680-2472699 | None:intergenic | 55.0% | |
TGCCAACGCTCCCACCAAAA+AGG | + | chr3.1:2472403-2472422 | MS.gene058615:CDS | 55.0% | |
! | GTATGGCCTCCATCTAGGAC+CGG | - | chr3.1:2474168-2474187 | None:intergenic | 55.0% |
! | TATGGCCTCCATCTAGGACC+GGG | - | chr3.1:2474167-2474186 | None:intergenic | 55.0% |
!! | CTGCTGATTCCGACGCTGTT+TGG | + | chr3.1:2472318-2472337 | MS.gene058615:CDS | 55.0% |
!! | TTTGGTGGGAGCGTTGGCAA+GGG | - | chr3.1:2472402-2472421 | None:intergenic | 55.0% |
!!! | TTTTGGTGGGAGCGTTGGCA+AGG | - | chr3.1:2472403-2472422 | None:intergenic | 55.0% |
CTCGGGTATGGCCTCCATCT+AGG | - | chr3.1:2474173-2474192 | None:intergenic | 60.0% | |
GGGAATCCGAAGGGAGCAAG+TGG | - | chr3.1:2472346-2472365 | None:intergenic | 60.0% | |
!! | GGCCTTTTTGGTGGGAGCGT+TGG | - | chr3.1:2472408-2472427 | None:intergenic | 60.0% |
!! | GTGGGAGCGTTGGCAAGGGA+AGG | - | chr3.1:2472398-2472417 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 2472206 | 2474394 | 2472206 | ID=MS.gene058615 |
chr3.1 | mRNA | 2472206 | 2474394 | 2472206 | ID=MS.gene058615.t1;Parent=MS.gene058615 |
chr3.1 | exon | 2472206 | 2472478 | 2472206 | ID=MS.gene058615.t1.exon1;Parent=MS.gene058615.t1 |
chr3.1 | CDS | 2472206 | 2472478 | 2472206 | ID=cds.MS.gene058615.t1;Parent=MS.gene058615.t1 |
chr3.1 | exon | 2472616 | 2472767 | 2472616 | ID=MS.gene058615.t1.exon2;Parent=MS.gene058615.t1 |
chr3.1 | CDS | 2472616 | 2472767 | 2472616 | ID=cds.MS.gene058615.t1;Parent=MS.gene058615.t1 |
chr3.1 | exon | 2473884 | 2474394 | 2473884 | ID=MS.gene058615.t1.exon3;Parent=MS.gene058615.t1 |
chr3.1 | CDS | 2473884 | 2474394 | 2473884 | ID=cds.MS.gene058615.t1;Parent=MS.gene058615.t1 |
Gene Sequence |
Protein sequence |