Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005027.t1 | XP_003590890.1 | 91.3 | 265 | 23 | 0 | 1 | 265 | 1 | 265 | 2.50E-135 | 491.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005027.t1 | Q9ZVQ6 | 49.2 | 260 | 120 | 5 | 8 | 264 | 18 | 268 | 1.8e-65 | 250.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005027.t1 | G7I5M0 | 91.3 | 265 | 23 | 0 | 1 | 265 | 1 | 265 | 1.8e-135 | 491.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005027.t1 | MTR_1g079370 | 91.321 | 265 | 23 | 0 | 1 | 265 | 1 | 265 | 1.77e-179 | 494 |
MS.gene005027.t1 | MTR_1g079380 | 83.774 | 265 | 43 | 0 | 1 | 265 | 1 | 265 | 5.69e-154 | 431 |
MS.gene005027.t1 | MTR_1g079180 | 75.373 | 268 | 60 | 3 | 1 | 265 | 1 | 265 | 1.99e-145 | 408 |
MS.gene005027.t1 | MTR_1g079260 | 68.750 | 272 | 78 | 2 | 1 | 265 | 1 | 272 | 1.39e-135 | 383 |
MS.gene005027.t1 | MTR_1g100597 | 69.597 | 273 | 74 | 3 | 1 | 265 | 1 | 272 | 4.34e-132 | 374 |
MS.gene005027.t1 | MTR_1g079460 | 69.030 | 268 | 78 | 2 | 1 | 265 | 1 | 266 | 1.19e-129 | 368 |
MS.gene005027.t1 | MTR_1g079200 | 70.370 | 270 | 69 | 4 | 1 | 265 | 1 | 264 | 1.91e-129 | 367 |
MS.gene005027.t1 | MTR_1g079230 | 63.538 | 277 | 85 | 3 | 1 | 265 | 1 | 273 | 2.16e-118 | 340 |
MS.gene005027.t1 | MTR_1g079850 | 61.922 | 281 | 91 | 4 | 1 | 265 | 1 | 281 | 1.41e-112 | 325 |
MS.gene005027.t1 | MTR_1g100613 | 66.939 | 245 | 69 | 2 | 15 | 248 | 1 | 244 | 3.45e-111 | 320 |
MS.gene005027.t1 | MTR_3g452600 | 62.357 | 263 | 93 | 4 | 4 | 265 | 10 | 267 | 8.54e-110 | 318 |
MS.gene005027.t1 | MTR_1g079250 | 62.230 | 278 | 92 | 5 | 1 | 265 | 1 | 278 | 4.96e-109 | 317 |
MS.gene005027.t1 | MTR_1g026510 | 58.304 | 283 | 100 | 6 | 1 | 265 | 1 | 283 | 1.47e-107 | 313 |
MS.gene005027.t1 | MTR_3g006850 | 56.856 | 299 | 92 | 5 | 4 | 265 | 17 | 315 | 8.57e-103 | 302 |
MS.gene005027.t1 | MTR_2g079100 | 59.387 | 261 | 96 | 2 | 4 | 262 | 9 | 261 | 1.64e-98 | 289 |
MS.gene005027.t1 | MTR_3g450990 | 56.989 | 279 | 98 | 6 | 4 | 265 | 10 | 283 | 4.05e-98 | 289 |
MS.gene005027.t1 | MTR_1g079410 | 54.815 | 270 | 114 | 4 | 2 | 265 | 6 | 273 | 2.44e-95 | 281 |
MS.gene005027.t1 | MTR_1g079350 | 56.522 | 276 | 108 | 6 | 1 | 265 | 1 | 275 | 3.86e-94 | 278 |
MS.gene005027.t1 | MTR_1g079140 | 47.635 | 296 | 121 | 5 | 3 | 265 | 12 | 306 | 1.18e-87 | 263 |
MS.gene005027.t1 | MTR_1g078470 | 72.254 | 173 | 43 | 3 | 93 | 265 | 17 | 184 | 3.68e-83 | 247 |
MS.gene005027.t1 | MTR_1g079340 | 51.736 | 288 | 114 | 6 | 1 | 265 | 40 | 325 | 1.43e-81 | 248 |
MS.gene005027.t1 | MTR_7g096300 | 56.574 | 251 | 94 | 5 | 1 | 245 | 1 | 242 | 5.32e-81 | 258 |
MS.gene005027.t1 | MTR_1g079400 | 47.703 | 283 | 112 | 3 | 4 | 265 | 12 | 279 | 3.56e-78 | 238 |
MS.gene005027.t1 | MTR_7g112550 | 44.681 | 282 | 135 | 9 | 2 | 265 | 5 | 283 | 7.73e-66 | 206 |
MS.gene005027.t1 | MTR_1g083580 | 38.489 | 278 | 155 | 6 | 2 | 265 | 6 | 281 | 8.23e-61 | 194 |
MS.gene005027.t1 | MTR_1g079240 | 59.777 | 179 | 61 | 4 | 87 | 265 | 12 | 179 | 2.10e-60 | 189 |
MS.gene005027.t1 | MTR_7g112560 | 39.245 | 265 | 144 | 6 | 7 | 265 | 4 | 257 | 1.78e-56 | 182 |
MS.gene005027.t1 | MTR_4g023570 | 37.262 | 263 | 132 | 6 | 7 | 265 | 4 | 237 | 2.03e-50 | 166 |
MS.gene005027.t1 | MTR_1g076870 | 61.194 | 134 | 36 | 1 | 128 | 245 | 2 | 135 | 1.21e-49 | 160 |
MS.gene005027.t1 | MTR_1g079130 | 43.915 | 189 | 82 | 3 | 101 | 265 | 1 | 189 | 1.50e-46 | 154 |
MS.gene005027.t1 | MTR_1g079350 | 49.704 | 169 | 70 | 5 | 1 | 159 | 1 | 164 | 3.69e-43 | 146 |
MS.gene005027.t1 | MTR_1g079210 | 56.098 | 123 | 42 | 1 | 129 | 239 | 7 | 129 | 3.31e-36 | 125 |
MS.gene005027.t1 | MTR_7g096310 | 53.731 | 134 | 48 | 4 | 60 | 185 | 35 | 162 | 4.92e-34 | 121 |
MS.gene005027.t1 | MTR_3g058640 | 58.824 | 102 | 40 | 1 | 128 | 229 | 7 | 106 | 3.21e-33 | 117 |
MS.gene005027.t1 | MTR_1g078460 | 68.966 | 87 | 27 | 0 | 1 | 87 | 64 | 150 | 3.69e-33 | 118 |
MS.gene005027.t1 | MTR_2g042540 | 60.000 | 105 | 40 | 2 | 1 | 103 | 1 | 105 | 1.28e-32 | 116 |
MS.gene005027.t1 | MTR_1g079220 | 75.000 | 68 | 15 | 1 | 165 | 232 | 1 | 66 | 7.90e-26 | 97.1 |
MS.gene005027.t1 | MTR_7g103380 | 26.087 | 276 | 178 | 6 | 4 | 264 | 19 | 283 | 8.17e-26 | 103 |
MS.gene005027.t1 | MTR_4g083970 | 28.846 | 208 | 124 | 4 | 63 | 265 | 102 | 290 | 1.64e-22 | 94.4 |
MS.gene005027.t1 | MTR_0113s0040 | 26.855 | 283 | 162 | 7 | 2 | 265 | 20 | 276 | 9.50e-20 | 86.7 |
MS.gene005027.t1 | MTR_1g079390 | 78.000 | 50 | 9 | 2 | 211 | 260 | 8 | 55 | 5.02e-17 | 73.6 |
MS.gene005027.t1 | MTR_1g101390 | 25.899 | 278 | 169 | 6 | 2 | 264 | 26 | 281 | 7.36e-17 | 79.0 |
MS.gene005027.t1 | MTR_0002s0020 | 25.641 | 273 | 175 | 7 | 3 | 262 | 21 | 278 | 6.48e-16 | 76.3 |
MS.gene005027.t1 | MTR_5g010800 | 23.759 | 282 | 170 | 8 | 2 | 264 | 15 | 270 | 2.28e-15 | 74.3 |
MS.gene005027.t1 | MTR_4g102770 | 31.973 | 147 | 94 | 3 | 4 | 146 | 19 | 163 | 3.32e-14 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005027.t1 | AT2G02360 | 49.042 | 261 | 121 | 5 | 7 | 264 | 17 | 268 | 1.55e-83 | 251 |
MS.gene005027.t1 | AT2G02340 | 44.444 | 270 | 143 | 4 | 1 | 264 | 33 | 301 | 1.13e-72 | 225 |
MS.gene005027.t1 | AT2G02240 | 45.000 | 260 | 134 | 5 | 7 | 264 | 64 | 316 | 9.36e-71 | 220 |
MS.gene005027.t1 | AT1G80110 | 46.565 | 262 | 132 | 5 | 4 | 264 | 1 | 255 | 3.11e-69 | 214 |
MS.gene005027.t1 | AT2G02250 | 44.318 | 264 | 137 | 6 | 4 | 264 | 47 | 303 | 1.54e-68 | 214 |
MS.gene005027.t1 | AT2G02230 | 38.411 | 302 | 140 | 7 | 7 | 265 | 35 | 333 | 4.07e-64 | 204 |
MS.gene005027.t1 | AT1G09155 | 41.935 | 279 | 141 | 7 | 7 | 265 | 3 | 280 | 4.24e-62 | 197 |
MS.gene005027.t1 | AT2G02350 | 40.377 | 265 | 148 | 6 | 4 | 264 | 24 | 282 | 4.39e-59 | 189 |
MS.gene005027.t1 | AT1G56250 | 42.294 | 279 | 140 | 7 | 7 | 265 | 4 | 281 | 4.25e-58 | 187 |
MS.gene005027.t1 | AT1G56240 | 41.727 | 278 | 141 | 7 | 7 | 264 | 4 | 280 | 1.12e-57 | 186 |
MS.gene005027.t1 | AT2G02310 | 37.262 | 263 | 157 | 4 | 6 | 265 | 47 | 304 | 8.51e-55 | 179 |
MS.gene005027.t1 | AT2G02320 | 40.226 | 266 | 143 | 7 | 6 | 264 | 42 | 298 | 2.19e-53 | 175 |
MS.gene005027.t1 | AT2G02300 | 38.148 | 270 | 137 | 8 | 4 | 265 | 34 | 281 | 2.95e-49 | 164 |
MS.gene005027.t1 | AT5G24560 | 36.538 | 260 | 93 | 6 | 6 | 265 | 5 | 192 | 4.68e-48 | 158 |
MS.gene005027.t1 | AT3G53000 | 27.698 | 278 | 170 | 8 | 4 | 264 | 21 | 284 | 1.68e-30 | 115 |
MS.gene005027.t1 | AT2G02350 | 38.690 | 168 | 96 | 5 | 101 | 264 | 1 | 165 | 7.28e-30 | 110 |
MS.gene005027.t1 | AT1G33920 | 31.844 | 179 | 90 | 6 | 96 | 265 | 9 | 164 | 5.69e-19 | 82.0 |
MS.gene005027.t1 | AT3G61060 | 24.907 | 269 | 178 | 7 | 6 | 265 | 27 | 280 | 2.02e-18 | 83.2 |
MS.gene005027.t1 | AT1G63090 | 29.557 | 203 | 121 | 6 | 4 | 189 | 26 | 223 | 1.58e-17 | 80.5 |
MS.gene005027.t1 | AT3G61060 | 23.381 | 278 | 172 | 6 | 6 | 265 | 27 | 281 | 1.80e-17 | 80.5 |
MS.gene005027.t1 | AT4G19850 | 31.868 | 182 | 92 | 8 | 94 | 265 | 17 | 176 | 2.09e-17 | 78.2 |
MS.gene005027.t1 | AT4G19850 | 32.418 | 182 | 91 | 8 | 94 | 265 | 59 | 218 | 2.21e-17 | 79.0 |
MS.gene005027.t1 | AT4G19840 | 31.176 | 170 | 96 | 5 | 99 | 265 | 94 | 245 | 2.97e-17 | 79.3 |
MS.gene005027.t1 | AT1G12710 | 24.460 | 278 | 169 | 6 | 4 | 264 | 28 | 281 | 4.56e-17 | 79.3 |
MS.gene005027.t1 | AT1G12710 | 30.000 | 160 | 106 | 3 | 4 | 160 | 28 | 184 | 1.27e-13 | 70.1 |
MS.gene005027.t1 | AT5G52120 | 24.483 | 290 | 166 | 7 | 1 | 264 | 18 | 280 | 1.83e-13 | 69.3 |
Find 70 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAGCTGTATATTGAGTATT+TGG | 0.131565 | 1.3:+56392840 | None:intergenic |
CTAGATCTCTTGCAATTGTT+TGG | 0.246175 | 1.3:-56394390 | MS.gene005027:CDS |
AAAAGGAATGACAGAGATTC+AGG | 0.277184 | 1.3:-56394820 | None:intergenic |
TAGATCTCTTGCAATTGTTT+GGG | 0.285923 | 1.3:-56394389 | MS.gene005027:CDS |
TGGAGATAAAGGCTGGTAAT+TGG | 0.287191 | 1.3:-56392566 | MS.gene005027:CDS |
AAGCTGTATATTGAGTATTT+GGG | 0.314170 | 1.3:+56392841 | None:intergenic |
TTCTTGAAGGAATAGAAATT+AGG | 0.317502 | 1.3:-56392530 | MS.gene005027:CDS |
CATCATCGATCATGATAATA+AGG | 0.320160 | 1.3:-56394574 | MS.gene005027:intron |
GGATTCCTTTGCCTGATTCC+AGG | 0.335609 | 1.3:-56394342 | MS.gene005027:intron |
TCAACAAGCTTATCAACTTC+AGG | 0.340561 | 1.3:+56392912 | None:intergenic |
GATATTTCATCTATCATCTC+AGG | 0.362347 | 1.3:-56394663 | MS.gene005027:CDS |
GATGAGTTTGTTGGAGATAA+AGG | 0.363302 | 1.3:-56392577 | MS.gene005027:CDS |
ATACCTTCCACTTCCACATT+TGG | 0.377228 | 1.3:+56392711 | None:intergenic |
TTTCAATTGGTTAGAAAGAG+TGG | 0.401836 | 1.3:-56394436 | MS.gene005027:CDS |
CCTCCGATTCCGACGCTGTA+TGG | 0.406897 | 1.3:-56394704 | MS.gene005027:CDS |
GCTGCTTAATTGTGTTACTT+AGG | 0.411610 | 1.3:+56392507 | None:intergenic |
ATAATAAGCACTATTGGAAC+TGG | 0.417736 | 1.3:-56394363 | MS.gene005027:CDS |
TAGTACTAAAATTGTCTGTT+TGG | 0.420764 | 1.3:-56392736 | MS.gene005027:CDS |
GACAGAGATTCAGGATTTGC+CGG | 0.423087 | 1.3:-56394811 | MS.gene005027:CDS |
AAGAGTGGTCTCTTTCTTGA+AGG | 0.428845 | 1.3:-56392543 | MS.gene005027:CDS |
ATTCCATACAGCGTCGGAAT+CGG | 0.440337 | 1.3:+56394701 | None:intergenic |
TGGAGTTGTACGAGAGACTA+TGG | 0.442874 | 1.3:+56394773 | None:intergenic |
GGGGTGATAATAAGCACTAT+TGG | 0.451906 | 1.3:-56394369 | MS.gene005027:CDS |
GGGTGGTTGGAGATTGAGAT+GGG | 0.458032 | 1.3:-56392639 | MS.gene005027:CDS |
GCGCTAACTAACCTGGAATC+AGG | 0.472883 | 1.3:+56394331 | None:intergenic |
AGAAGTCCTGATGAGTTTGT+TGG | 0.481141 | 1.3:-56392586 | MS.gene005027:CDS |
ATGGCGGCAATGCATCCTTC+CGG | 0.482859 | 1.3:+56394792 | None:intergenic |
CGTCCTAGTGTGAGAAGCGA+TGG | 0.485861 | 1.3:-56392660 | MS.gene005027:CDS |
TTATCTCCAACAAACTCATC+AGG | 0.495784 | 1.3:+56392580 | None:intergenic |
TTATCATGATCGATGATGAC+AGG | 0.505190 | 1.3:+56394579 | None:intergenic |
GTAGGAGCGTTGGCGAGTAA+AGG | 0.512124 | 1.3:+56394636 | None:intergenic |
AGTTTGTTGGAGATAAAGGC+TGG | 0.513728 | 1.3:-56392573 | MS.gene005027:CDS |
TGGGTGGTTGGAGATTGAGA+TGG | 0.517146 | 1.3:-56392640 | MS.gene005027:CDS |
GAGTCTCTGCCGGCGTCGAG+TGG | 0.524622 | 1.3:+56394753 | None:intergenic |
CAACAAGCTTATCAACTTCA+GGG | 0.526604 | 1.3:+56392913 | None:intergenic |
ATGCAGCATAACAGAGCAGT+AGG | 0.534871 | 1.3:-56392690 | MS.gene005027:CDS |
CGTCGGAATCGGAGGCTGAT+CGG | 0.538969 | 1.3:+56394712 | None:intergenic |
CACCCATCGCTTCTCACACT+AGG | 0.543006 | 1.3:+56392657 | None:intergenic |
CCATACAGCGTCGGAATCGG+AGG | 0.547740 | 1.3:+56394704 | None:intergenic |
AGATCTCTTGCAATTGTTTG+GGG | 0.552612 | 1.3:-56394388 | MS.gene005027:CDS |
GAGATTCAGGATTTGCCGGA+AGG | 0.560627 | 1.3:-56394807 | MS.gene005027:CDS |
GTTCAAAATGATTGATGCGT+GGG | 0.567046 | 1.3:-56392811 | MS.gene005027:CDS |
TTTGGATCCAAATGTGGAAG+TGG | 0.569537 | 1.3:-56392718 | MS.gene005027:CDS |
ATGATAGATGAAATATCAGA+AGG | 0.573253 | 1.3:+56394669 | None:intergenic |
TGTGAGAAGCGATGGGTGGT+TGG | 0.576323 | 1.3:-56392652 | MS.gene005027:CDS |
ATATTTCATCTATCATCTCA+GGG | 0.577226 | 1.3:-56394662 | MS.gene005027:CDS |
GATCCAAATGTGGAAGTGGA+AGG | 0.579730 | 1.3:-56392714 | MS.gene005027:CDS |
CGTCCTGTGGAGTTATCAGT+TGG | 0.583128 | 1.3:-56392777 | MS.gene005027:CDS |
GTATGTTTGCTAGAAATTCG+TGG | 0.589897 | 1.3:-56392888 | MS.gene005027:CDS |
AAGGCTGGTAATTGGAAGAG+TGG | 0.592463 | 1.3:-56392558 | MS.gene005027:CDS |
GTGGTTGGAGATTGAGATGG+GGG | 0.596500 | 1.3:-56392637 | MS.gene005027:CDS |
TTATCAGTTGGTGTCGAAGG+TGG | 0.605148 | 1.3:-56392765 | MS.gene005027:CDS |
ACACCAACTGATAACTCCAC+AGG | 0.607721 | 1.3:+56392774 | None:intergenic |
AGCTGTATATTGAGTATTTG+GGG | 0.611231 | 1.3:+56392842 | None:intergenic |
AGAAACGACAGAGTCTCTGC+CGG | 0.615620 | 1.3:+56394743 | None:intergenic |
GGTGGTTGGAGATTGAGATG+GGG | 0.619250 | 1.3:-56392638 | MS.gene005027:CDS |
GAGTTATCAGTTGGTGTCGA+AGG | 0.620810 | 1.3:-56392768 | MS.gene005027:CDS |
TGTCTGTTTGGATCCAAATG+TGG | 0.625217 | 1.3:-56392724 | MS.gene005027:CDS |
ACTAACCTGGAATCAGGCAA+AGG | 0.635048 | 1.3:+56394337 | None:intergenic |
GGGATTTCAGAACCGTCCTG+TGG | 0.635758 | 1.3:-56392790 | MS.gene005027:CDS |
GTCCTAGTGTGAGAAGCGAT+GGG | 0.643186 | 1.3:-56392659 | MS.gene005027:CDS |
TGTTCAAAATGATTGATGCG+TGG | 0.644329 | 1.3:-56392812 | MS.gene005027:CDS |
TATCATGATCGATGATGACA+GGG | 0.656082 | 1.3:+56394580 | None:intergenic |
TTCAAAATGATTGATGCGTG+GGG | 0.672657 | 1.3:-56392810 | MS.gene005027:CDS |
AAAACGATTCCATACAGCGT+CGG | 0.672667 | 1.3:+56394695 | None:intergenic |
AGTATTTGGGGACAGAACAA+CGG | 0.674978 | 1.3:+56392854 | None:intergenic |
CTAGTGTGAGAAGCGATGGG+TGG | 0.709944 | 1.3:-56392656 | MS.gene005027:CDS |
CAACTGATAACTCCACAGGA+CGG | 0.710853 | 1.3:+56392778 | None:intergenic |
CGTACAACTCCACTCGACGC+CGG | 0.717247 | 1.3:-56394762 | MS.gene005027:CDS |
AGTTGTACGAGAGACTATGG+CGG | 0.789727 | 1.3:+56394776 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATATAT+AGG | + | chr1.3:56394284-56394265 | None:intergenic | 0.0% |
!! | AATAGTATCTAGTATTAATT+AGG | + | chr1.3:56393070-56393089 | None:intergenic | 15.0% |
!! | ATTCAAAAAGAATAACAAAA+AGG | - | chr1.3:56393296-56393315 | MS.gene005027:intron | 15.0% |
!! | CTTAATATTCGATAAATTGA+CGG | + | chr1.3:56392804-56392823 | None:intergenic | 20.0% |
!! | GATGCATTCAAAAATATATA+GGG | + | chr1.3:56393717-56393736 | None:intergenic | 20.0% |
!! | TGATGCATTCAAAAATATAT+AGG | + | chr1.3:56393718-56393737 | None:intergenic | 20.0% |
!! | TTGTAAAGTAACAAACAAAT+TGG | + | chr1.3:56393766-56393785 | None:intergenic | 20.0% |
!!! | AAAACTCTGAAAATTTTTGA+AGG | + | chr1.3:56392881-56392900 | None:intergenic | 20.0% |
!!! | AAATTTTCAGAGTTTTCAAT+TGG | - | chr1.3:56392885-56392904 | MS.gene005027:CDS | 20.0% |
!!! | ATTGAACATGCTTTAAATTT+GGG | + | chr1.3:56393465-56393484 | None:intergenic | 20.0% |
!!! | GTAAAATTTCTAAGAAAACA+TGG | + | chr1.3:56393909-56393928 | None:intergenic | 20.0% |
!!! | TGGTCAGATATTTTAAAATT+TGG | + | chr1.3:56393746-56393765 | None:intergenic | 20.0% |
! | AAGCTGTATATTGAGTATTT+GGG | + | chr1.3:56394496-56394515 | None:intergenic | 25.0% |
! | ATACCATATATCAAAATCCA+TGG | - | chr1.3:56393413-56393432 | MS.gene005027:intron | 25.0% |
! | ATATTTCATCTATCATCTCA+GGG | - | chr1.3:56392672-56392691 | MS.gene005027:CDS | 25.0% |
! | ATGATAGATGAAATATCAGA+AGG | + | chr1.3:56392668-56392687 | None:intergenic | 25.0% |
! | CATTCAAAAATATATAGGGT+CGG | + | chr1.3:56393713-56393732 | None:intergenic | 25.0% |
! | CGTCAATTTATCGAATATTA+AGG | - | chr1.3:56392802-56392821 | MS.gene005027:CDS | 25.0% |
! | TAAGCTGTATATTGAGTATT+TGG | + | chr1.3:56394497-56394516 | None:intergenic | 25.0% |
! | TAGTACTAAAATTGTCTGTT+TGG | - | chr1.3:56394598-56394617 | MS.gene005027:CDS | 25.0% |
! | TTCTTGAAGGAATAGAAATT+AGG | - | chr1.3:56394804-56394823 | MS.gene005027:CDS | 25.0% |
!! | CTTTGTTTGGTAAAAAATAG+TGG | + | chr1.3:56393200-56393219 | None:intergenic | 25.0% |
!! | GATTGAACATGCTTTAAATT+TGG | + | chr1.3:56393466-56393485 | None:intergenic | 25.0% |
!! | TCAACTTTTCTCAGTTATTA+TGG | - | chr1.3:56394357-56394376 | MS.gene005027:CDS | 25.0% |
!!! | AAAAATAGTGGATAGTTGAT+AGG | + | chr1.3:56393188-56393207 | None:intergenic | 25.0% |
!!! | AAAGCCTTGTCATTTTTTAT+GGG | - | chr1.3:56393216-56393235 | MS.gene005027:intron | 25.0% |
!!! | ATGGATTTTGATATATGGTA+TGG | + | chr1.3:56393414-56393433 | None:intergenic | 25.0% |
!!! | TAAGTTATATATGCCGTTTT+AGG | + | chr1.3:56394138-56394157 | None:intergenic | 25.0% |
ACCTTATGCAAAAGATTGAA+TGG | + | chr1.3:56393965-56393984 | None:intergenic | 30.0% | |
AGCTGTATATTGAGTATTTG+GGG | + | chr1.3:56394495-56394514 | None:intergenic | 30.0% | |
AGTGATCAATTACTGATGAT+GGG | - | chr1.3:56393264-56393283 | MS.gene005027:intron | 30.0% | |
ATAATAAGCACTATTGGAAC+TGG | - | chr1.3:56392971-56392990 | MS.gene005027:intron | 30.0% | |
CATCATCGATCATGATAATA+AGG | - | chr1.3:56392760-56392779 | MS.gene005027:CDS | 30.0% | |
GAATGTTGGATTTCCTAAAA+CGG | - | chr1.3:56394122-56394141 | MS.gene005027:intron | 30.0% | |
GATATTTCATCTATCATCTC+AGG | - | chr1.3:56392671-56392690 | MS.gene005027:CDS | 30.0% | |
GATCGTTAACTAAAAATTGC+AGG | + | chr1.3:56394222-56394241 | None:intergenic | 30.0% | |
GATTGTCACAAAATAAGAGT+TGG | + | chr1.3:56394004-56394023 | None:intergenic | 30.0% | |
TAGATCTCTTGCAATTGTTT+GGG | - | chr1.3:56392945-56392964 | MS.gene005027:intron | 30.0% | |
TAGTGATCAATTACTGATGA+TGG | - | chr1.3:56393263-56393282 | MS.gene005027:intron | 30.0% | |
TATTCGATAAATTGACGGTT+AGG | + | chr1.3:56392799-56392818 | None:intergenic | 30.0% | |
TCAGTAATTGATCACTAACA+TGG | + | chr1.3:56393260-56393279 | None:intergenic | 30.0% | |
TTTCAATTGGTTAGAAAGAG+TGG | - | chr1.3:56392898-56392917 | MS.gene005027:CDS | 30.0% | |
! | TCCTTTTAGGCTTTTAGTAT+GGG | - | chr1.3:56394092-56394111 | MS.gene005027:intron | 30.0% |
!! | AAAAATGACAAGGCTTTGTT+TGG | + | chr1.3:56393213-56393232 | None:intergenic | 30.0% |
!! | AGACAATTTTAGTACTACTC+TGG | + | chr1.3:56394595-56394614 | None:intergenic | 30.0% |
!! | GTGTTTTATTACATGACAGA+TGG | + | chr1.3:56394335-56394354 | None:intergenic | 30.0% |
!! | TAGCCATGGATTTTGATATA+TGG | + | chr1.3:56393419-56393438 | None:intergenic | 30.0% |
!! | TTTGTGTACTACTTTTGAAC+AGG | - | chr1.3:56394396-56394415 | MS.gene005027:CDS | 30.0% |
!!! | AATTACTGATGATGGGTTTT+AGG | - | chr1.3:56393271-56393290 | MS.gene005027:intron | 30.0% |
!!! | AGATAGAGATCTTTTTTGGT+AGG | + | chr1.3:56392719-56392738 | None:intergenic | 30.0% |
!!! | AGCAAGATAGAGATCTTTTT+TGG | + | chr1.3:56392723-56392742 | None:intergenic | 30.0% |
!!! | ATTACTGATGATGGGTTTTA+GGG | - | chr1.3:56393272-56393291 | MS.gene005027:intron | 30.0% |
!!! | CAAAGCCTTGTCATTTTTTA+TGG | - | chr1.3:56393215-56393234 | MS.gene005027:intron | 30.0% |
AATGGCCAAGGTAATTTGAT+GGG | + | chr1.3:56393947-56393966 | None:intergenic | 35.0% | |
AGATCTCTTGCAATTGTTTG+GGG | - | chr1.3:56392946-56392965 | MS.gene005027:intron | 35.0% | |
CAACAAGCTTATCAACTTCA+GGG | + | chr1.3:56394424-56394443 | None:intergenic | 35.0% | |
CAAGCCCATAAAAAATGACA+AGG | + | chr1.3:56393223-56393242 | None:intergenic | 35.0% | |
CACAAAATAAGAGTTGGAGT+TGG | + | chr1.3:56393998-56394017 | None:intergenic | 35.0% | |
CATCGATCATGATAATAAGG+TGG | - | chr1.3:56392763-56392782 | MS.gene005027:CDS | 35.0% | |
CCAACTATTCTTCACTAACT+TGG | + | chr1.3:56393379-56393398 | None:intergenic | 35.0% | |
CCAAGTTAGTGAAGAATAGT+TGG | - | chr1.3:56393376-56393395 | MS.gene005027:intron | 35.0% | |
CTAGATCTCTTGCAATTGTT+TGG | - | chr1.3:56392944-56392963 | MS.gene005027:intron | 35.0% | |
CTTACCAAAGAGACCTTAAT+CGG | + | chr1.3:56393118-56393137 | None:intergenic | 35.0% | |
GAAATCCCATCAAATTACCT+TGG | - | chr1.3:56393939-56393958 | MS.gene005027:intron | 35.0% | |
GATACTTAGCTGAAGTGATA+TGG | + | chr1.3:56393551-56393570 | None:intergenic | 35.0% | |
GATTAGAAGATGGCAAAAGT+CGG | + | chr1.3:56393357-56393376 | None:intergenic | 35.0% | |
GGTCGATAAATTAACAATGC+AGG | + | chr1.3:56394244-56394263 | None:intergenic | 35.0% | |
GTTCAAAATGATTGATGCGT+GGG | - | chr1.3:56394523-56394542 | MS.gene005027:intron | 35.0% | |
TATCATGATCGATGATGACA+GGG | + | chr1.3:56392757-56392776 | None:intergenic | 35.0% | |
TCAACAAGCTTATCAACTTC+AGG | + | chr1.3:56394425-56394444 | None:intergenic | 35.0% | |
TCCAAATTCTCTAAGTCACA+AGG | + | chr1.3:56393518-56393537 | None:intergenic | 35.0% | |
TCCCATACTAAAAGCCTAAA+AGG | + | chr1.3:56394096-56394115 | None:intergenic | 35.0% | |
TCCTTGTGACTTAGAGAATT+TGG | - | chr1.3:56393514-56393533 | MS.gene005027:intron | 35.0% | |
TGTTCAAAATGATTGATGCG+TGG | - | chr1.3:56394522-56394541 | MS.gene005027:intron | 35.0% | |
TTATCATGATCGATGATGAC+AGG | + | chr1.3:56392758-56392777 | None:intergenic | 35.0% | |
TTATCTCCAACAAACTCATC+AGG | + | chr1.3:56394757-56394776 | None:intergenic | 35.0% | |
TTCAAAATGATTGATGCGTG+GGG | - | chr1.3:56394524-56394543 | MS.gene005027:intron | 35.0% | |
! | CACTAACTTGGATTAGAAGA+TGG | + | chr1.3:56393367-56393386 | None:intergenic | 35.0% |
! | GCCATTCAATCTTTTGCATA+AGG | - | chr1.3:56393961-56393980 | MS.gene005027:intron | 35.0% |
! | GTATGTTTGCTAGAAATTCG+TGG | - | chr1.3:56394446-56394465 | MS.gene005027:intron | 35.0% |
! | GTCCTTTTAGGCTTTTAGTA+TGG | - | chr1.3:56394091-56394110 | MS.gene005027:intron | 35.0% |
! | TTAGTGAAGAATAGTTGGTG+TGG | - | chr1.3:56393381-56393400 | MS.gene005027:intron | 35.0% |
!! | AATCAAACCAGTACCGATTA+AGG | - | chr1.3:56393102-56393121 | MS.gene005027:intron | 35.0% |
!! | GATGAGTTTGTTGGAGATAA+AGG | - | chr1.3:56394757-56394776 | MS.gene005027:CDS | 35.0% |
!! | TAATCGGTACTGGTTTGATT+CGG | + | chr1.3:56393102-56393121 | None:intergenic | 35.0% |
!!! | TTTTTTGATCCTGATTGCTG+CGG | - | chr1.3:56393684-56393703 | MS.gene005027:intron | 35.0% |
AAAACGATTCCATACAGCGT+CGG | + | chr1.3:56392642-56392661 | None:intergenic | 40.0% | |
AAAGAGACCTTAATCGGTAC+TGG | + | chr1.3:56393112-56393131 | None:intergenic | 40.0% | |
AACTGCAGAGTTACAGAAGA+AGG | + | chr1.3:56393642-56393661 | None:intergenic | 40.0% | |
AAGAGTGGTCTCTTTCTTGA+AGG | - | chr1.3:56394791-56394810 | MS.gene005027:CDS | 40.0% | |
AAGTTAAGCGCTAACTAACC+TGG | + | chr1.3:56393013-56393032 | None:intergenic | 40.0% | |
ACTTAGCTGAAGTGATATGG+AGG | + | chr1.3:56393548-56393567 | None:intergenic | 40.0% | |
AGAAGTCCTGATGAGTTTGT+TGG | - | chr1.3:56394748-56394767 | MS.gene005027:CDS | 40.0% | |
AGTATTTGGGGACAGAACAA+CGG | + | chr1.3:56394483-56394502 | None:intergenic | 40.0% | |
ATACCTTCCACTTCCACATT+TGG | + | chr1.3:56394626-56394645 | None:intergenic | 40.0% | |
CGGTTAATTCTTAGCAGATG+AGG | + | chr1.3:56393337-56393356 | None:intergenic | 40.0% | |
GAATGGCCAAGGTAATTTGA+TGG | + | chr1.3:56393948-56393967 | None:intergenic | 40.0% | |
GAGTTACAGAAGAAGGATCT+TGG | + | chr1.3:56393635-56393654 | None:intergenic | 40.0% | |
GGGGTGATAATAAGCACTAT+TGG | - | chr1.3:56392965-56392984 | MS.gene005027:intron | 40.0% | |
GTATGGGAGAAGATGAATGT+TGG | - | chr1.3:56394108-56394127 | MS.gene005027:intron | 40.0% | |
TACATAGGCCAGATAGTGTA+AGG | + | chr1.3:56393828-56393847 | None:intergenic | 40.0% | |
TACATGTAGCATCTTCGATG+TGG | + | chr1.3:56393885-56393904 | None:intergenic | 40.0% | |
TCCTTAGTCCTTACACTATC+TGG | - | chr1.3:56393817-56393836 | MS.gene005027:intron | 40.0% | |
TGCAAAAGATTGAATGGCCA+AGG | + | chr1.3:56393959-56393978 | None:intergenic | 40.0% | |
TGGAGATAAAGGCTGGTAAT+TGG | - | chr1.3:56394768-56394787 | MS.gene005027:CDS | 40.0% | |
TGTCTGTTTGGATCCAAATG+TGG | - | chr1.3:56394610-56394629 | MS.gene005027:CDS | 40.0% | |
TTTGGATCCAAATGTGGAAG+TGG | - | chr1.3:56394616-56394635 | MS.gene005027:CDS | 40.0% | |
! | AGAATAGTTGGTGTGGTGTT+AGG | - | chr1.3:56393388-56393407 | MS.gene005027:intron | 40.0% |
! | AGCAATGTCGATGTCCTTTT+AGG | - | chr1.3:56394079-56394098 | MS.gene005027:intron | 40.0% |
! | TAAATTTGGGTTTGAACCCG+AGG | + | chr1.3:56393452-56393471 | None:intergenic | 40.0% |
! | TTTTGCAACCAACTTCAGCT+TGG | - | chr1.3:56393605-56393624 | MS.gene005027:intron | 40.0% |
!! | AGTACCGATTAAGGTCTCTT+TGG | - | chr1.3:56393111-56393130 | MS.gene005027:intron | 40.0% |
!! | AGTTTGTTGGAGATAAAGGC+TGG | - | chr1.3:56394761-56394780 | MS.gene005027:CDS | 40.0% |
!! | GTTGATAGGCTAGCTTATAG+CGG | + | chr1.3:56393174-56393193 | None:intergenic | 40.0% |
!!! | ATCTTTTTTGGTAGGAGCGT+TGG | + | chr1.3:56392711-56392730 | None:intergenic | 40.0% |
AAGGCTGGTAATTGGAAGAG+TGG | - | chr1.3:56394776-56394795 | MS.gene005027:CDS | 45.0% | |
ACACCAACTGATAACTCCAC+AGG | + | chr1.3:56394563-56394582 | None:intergenic | 45.0% | |
ACACTTATCACGAGAACCTG+AGG | - | chr1.3:56394051-56394070 | MS.gene005027:intron | 45.0% | |
ACTAACCTGGAATCAGGCAA+AGG | + | chr1.3:56393000-56393019 | None:intergenic | 45.0% | |
AGTTGTACGAGAGACTATGG+CGG | + | chr1.3:56392561-56392580 | None:intergenic | 45.0% | |
ATGCAGCATAACAGAGCAGT+AGG | - | chr1.3:56394644-56394663 | MS.gene005027:CDS | 45.0% | |
CAACTGATAACTCCACAGGA+CGG | + | chr1.3:56394559-56394578 | None:intergenic | 45.0% | |
GACAGAGATTCAGGATTTGC+CGG | - | chr1.3:56392523-56392542 | MS.gene005027:CDS | 45.0% | |
GATCCAAATGTGGAAGTGGA+AGG | - | chr1.3:56394620-56394639 | MS.gene005027:CDS | 45.0% | |
GCCAGATAGTGTAAGGACTA+AGG | + | chr1.3:56393821-56393840 | None:intergenic | 45.0% | |
GGCCTAGTAAGCTTCTACAT+AGG | + | chr1.3:56393843-56393862 | None:intergenic | 45.0% | |
GGCCTATGTAGAAGCTTACT+AGG | - | chr1.3:56393838-56393857 | MS.gene005027:intron | 45.0% | |
TCAGGTTCTCGTGATAAGTG+TGG | + | chr1.3:56394052-56394071 | None:intergenic | 45.0% | |
TGGAGTTGTACGAGAGACTA+TGG | + | chr1.3:56392564-56392583 | None:intergenic | 45.0% | |
! | ATTCCATACAGCGTCGGAAT+CGG | + | chr1.3:56392636-56392655 | None:intergenic | 45.0% |
!! | GAGTTATCAGTTGGTGTCGA+AGG | - | chr1.3:56394566-56394585 | MS.gene005027:intron | 45.0% |
!! | TTATCAGTTGGTGTCGAAGG+TGG | - | chr1.3:56394569-56394588 | MS.gene005027:intron | 45.0% |
AGAAACGACAGAGTCTCTGC+CGG | + | chr1.3:56392594-56392613 | None:intergenic | 50.0% | |
AGCTTACTAGGCCACATGTG+TGG | - | chr1.3:56393850-56393869 | MS.gene005027:intron | 50.0% | |
ATGGGGGAGTTCTTCAGTTC+AGG | - | chr1.3:56394713-56394732 | MS.gene005027:CDS | 50.0% | |
CGTCCTGTGGAGTTATCAGT+TGG | - | chr1.3:56394557-56394576 | MS.gene005027:intron | 50.0% | |
GAGATTCAGGATTTGCCGGA+AGG | - | chr1.3:56392527-56392546 | MS.gene005027:CDS | 50.0% | |
GCGCTAACTAACCTGGAATC+AGG | + | chr1.3:56393006-56393025 | None:intergenic | 50.0% | |
GGATTCCTTTGCCTGATTCC+AGG | - | chr1.3:56392992-56393011 | MS.gene005027:intron | 50.0% | |
GGGTGGTTGGAGATTGAGAT+GGG | - | chr1.3:56394695-56394714 | MS.gene005027:CDS | 50.0% | |
GGTGGTTGGAGATTGAGATG+GGG | - | chr1.3:56394696-56394715 | MS.gene005027:CDS | 50.0% | |
GTCCTAGTGTGAGAAGCGAT+GGG | - | chr1.3:56394675-56394694 | MS.gene005027:CDS | 50.0% | |
GTGGTTGGAGATTGAGATGG+GGG | - | chr1.3:56394697-56394716 | MS.gene005027:CDS | 50.0% | |
TCGACATTGCTATGTGCCTC+AGG | + | chr1.3:56394070-56394089 | None:intergenic | 50.0% | |
TGGGTGGTTGGAGATTGAGA+TGG | - | chr1.3:56394694-56394713 | MS.gene005027:CDS | 50.0% | |
! | ATTTGGGTTTGAACCCGAGG+TGG | + | chr1.3:56393449-56393468 | None:intergenic | 50.0% |
ATGGCGGCAATGCATCCTTC+CGG | + | chr1.3:56392545-56392564 | None:intergenic | 55.0% | |
ATGGCTAGCAGCTACCACCT+CGG | - | chr1.3:56393432-56393451 | MS.gene005027:intron | 55.0% | |
CACCCATCGCTTCTCACACT+AGG | + | chr1.3:56394680-56394699 | None:intergenic | 55.0% | |
CGTCCTAGTGTGAGAAGCGA+TGG | - | chr1.3:56394674-56394693 | MS.gene005027:CDS | 55.0% | |
CTAGTGTGAGAAGCGATGGG+TGG | - | chr1.3:56394678-56394697 | MS.gene005027:CDS | 55.0% | |
GGATCCAGTGTCCACACATG+TGG | + | chr1.3:56393864-56393883 | None:intergenic | 55.0% | |
GGGATTTCAGAACCGTCCTG+TGG | - | chr1.3:56394544-56394563 | MS.gene005027:intron | 55.0% | |
TAGGCCACATGTGTGGACAC+TGG | - | chr1.3:56393857-56393876 | MS.gene005027:intron | 55.0% | |
TGTGAGAAGCGATGGGTGGT+TGG | - | chr1.3:56394682-56394701 | MS.gene005027:CDS | 55.0% | |
TTGGCGCTCCAAGCTGAAGT+TGG | + | chr1.3:56393616-56393635 | None:intergenic | 55.0% | |
!! | GTAGGAGCGTTGGCGAGTAA+AGG | + | chr1.3:56392701-56392720 | None:intergenic | 55.0% |
CCTCCGATTCCGACGCTGTA+TGG | - | chr1.3:56392630-56392649 | MS.gene005027:CDS | 60.0% | |
CGTACAACTCCACTCGACGC+CGG | - | chr1.3:56392572-56392591 | MS.gene005027:CDS | 60.0% | |
CGTCGGAATCGGAGGCTGAT+CGG | + | chr1.3:56392625-56392644 | None:intergenic | 60.0% | |
GAGGTGGTAGCTGCTAGCCA+TGG | + | chr1.3:56393433-56393452 | None:intergenic | 60.0% | |
TGGCTAGCAGCTACCACCTC+GGG | - | chr1.3:56393433-56393452 | MS.gene005027:intron | 60.0% | |
! | CCATACAGCGTCGGAATCGG+AGG | + | chr1.3:56392633-56392652 | None:intergenic | 60.0% |
! | GGTCGGTTTCCGCAGCAATC+AGG | + | chr1.3:56393696-56393715 | None:intergenic | 60.0% |
! | GAGTCTCTGCCGGCGTCGAG+TGG | + | chr1.3:56392584-56392603 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 56392521 | 56394835 | 56392521 | ID=MS.gene005027 |
chr1.3 | mRNA | 56392521 | 56394835 | 56392521 | ID=MS.gene005027.t1;Parent=MS.gene005027 |
chr1.3 | exon | 56394575 | 56394835 | 56394575 | ID=MS.gene005027.t1.exon1;Parent=MS.gene005027.t1 |
chr1.3 | CDS | 56394575 | 56394835 | 56394575 | ID=cds.MS.gene005027.t1;Parent=MS.gene005027.t1 |
chr1.3 | exon | 56394343 | 56394461 | 56394343 | ID=MS.gene005027.t1.exon2;Parent=MS.gene005027.t1 |
chr1.3 | CDS | 56394343 | 56394461 | 56394343 | ID=cds.MS.gene005027.t1;Parent=MS.gene005027.t1 |
chr1.3 | exon | 56392521 | 56392938 | 56392521 | ID=MS.gene005027.t1.exon3;Parent=MS.gene005027.t1 |
chr1.3 | CDS | 56392521 | 56392938 | 56392521 | ID=cds.MS.gene005027.t1;Parent=MS.gene005027.t1 |
Gene Sequence |
Protein sequence |