AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005027


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005027.t1 MTR_1g079370 91.321 265 23 0 1 265 1 265 1.77e-179 494
MS.gene005027.t1 MTR_1g079380 83.774 265 43 0 1 265 1 265 5.69e-154 431
MS.gene005027.t1 MTR_1g079180 75.373 268 60 3 1 265 1 265 1.99e-145 408
MS.gene005027.t1 MTR_1g079260 68.750 272 78 2 1 265 1 272 1.39e-135 383
MS.gene005027.t1 MTR_1g100597 69.597 273 74 3 1 265 1 272 4.34e-132 374
MS.gene005027.t1 MTR_1g079460 69.030 268 78 2 1 265 1 266 1.19e-129 368
MS.gene005027.t1 MTR_1g079200 70.370 270 69 4 1 265 1 264 1.91e-129 367
MS.gene005027.t1 MTR_1g079230 63.538 277 85 3 1 265 1 273 2.16e-118 340
MS.gene005027.t1 MTR_1g079850 61.922 281 91 4 1 265 1 281 1.41e-112 325
MS.gene005027.t1 MTR_1g100613 66.939 245 69 2 15 248 1 244 3.45e-111 320
MS.gene005027.t1 MTR_3g452600 62.357 263 93 4 4 265 10 267 8.54e-110 318
MS.gene005027.t1 MTR_1g079250 62.230 278 92 5 1 265 1 278 4.96e-109 317
MS.gene005027.t1 MTR_1g026510 58.304 283 100 6 1 265 1 283 1.47e-107 313
MS.gene005027.t1 MTR_3g006850 56.856 299 92 5 4 265 17 315 8.57e-103 302
MS.gene005027.t1 MTR_2g079100 59.387 261 96 2 4 262 9 261 1.64e-98 289
MS.gene005027.t1 MTR_3g450990 56.989 279 98 6 4 265 10 283 4.05e-98 289
MS.gene005027.t1 MTR_1g079410 54.815 270 114 4 2 265 6 273 2.44e-95 281
MS.gene005027.t1 MTR_1g079350 56.522 276 108 6 1 265 1 275 3.86e-94 278
MS.gene005027.t1 MTR_1g079140 47.635 296 121 5 3 265 12 306 1.18e-87 263
MS.gene005027.t1 MTR_1g078470 72.254 173 43 3 93 265 17 184 3.68e-83 247
MS.gene005027.t1 MTR_1g079340 51.736 288 114 6 1 265 40 325 1.43e-81 248
MS.gene005027.t1 MTR_7g096300 56.574 251 94 5 1 245 1 242 5.32e-81 258
MS.gene005027.t1 MTR_1g079400 47.703 283 112 3 4 265 12 279 3.56e-78 238
MS.gene005027.t1 MTR_7g112550 44.681 282 135 9 2 265 5 283 7.73e-66 206
MS.gene005027.t1 MTR_1g083580 38.489 278 155 6 2 265 6 281 8.23e-61 194
MS.gene005027.t1 MTR_1g079240 59.777 179 61 4 87 265 12 179 2.10e-60 189
MS.gene005027.t1 MTR_7g112560 39.245 265 144 6 7 265 4 257 1.78e-56 182
MS.gene005027.t1 MTR_4g023570 37.262 263 132 6 7 265 4 237 2.03e-50 166
MS.gene005027.t1 MTR_1g076870 61.194 134 36 1 128 245 2 135 1.21e-49 160
MS.gene005027.t1 MTR_1g079130 43.915 189 82 3 101 265 1 189 1.50e-46 154
MS.gene005027.t1 MTR_1g079350 49.704 169 70 5 1 159 1 164 3.69e-43 146
MS.gene005027.t1 MTR_1g079210 56.098 123 42 1 129 239 7 129 3.31e-36 125
MS.gene005027.t1 MTR_7g096310 53.731 134 48 4 60 185 35 162 4.92e-34 121
MS.gene005027.t1 MTR_3g058640 58.824 102 40 1 128 229 7 106 3.21e-33 117
MS.gene005027.t1 MTR_1g078460 68.966 87 27 0 1 87 64 150 3.69e-33 118
MS.gene005027.t1 MTR_2g042540 60.000 105 40 2 1 103 1 105 1.28e-32 116
MS.gene005027.t1 MTR_1g079220 75.000 68 15 1 165 232 1 66 7.90e-26 97.1
MS.gene005027.t1 MTR_7g103380 26.087 276 178 6 4 264 19 283 8.17e-26 103
MS.gene005027.t1 MTR_4g083970 28.846 208 124 4 63 265 102 290 1.64e-22 94.4
MS.gene005027.t1 MTR_0113s0040 26.855 283 162 7 2 265 20 276 9.50e-20 86.7
MS.gene005027.t1 MTR_1g079390 78.000 50 9 2 211 260 8 55 5.02e-17 73.6
MS.gene005027.t1 MTR_1g101390 25.899 278 169 6 2 264 26 281 7.36e-17 79.0
MS.gene005027.t1 MTR_0002s0020 25.641 273 175 7 3 262 21 278 6.48e-16 76.3
MS.gene005027.t1 MTR_5g010800 23.759 282 170 8 2 264 15 270 2.28e-15 74.3
MS.gene005027.t1 MTR_4g102770 31.973 147 94 3 4 146 19 163 3.32e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005027.t1 AT2G02360 49.042 261 121 5 7 264 17 268 1.55e-83 251
MS.gene005027.t1 AT2G02340 44.444 270 143 4 1 264 33 301 1.13e-72 225
MS.gene005027.t1 AT2G02240 45.000 260 134 5 7 264 64 316 9.36e-71 220
MS.gene005027.t1 AT1G80110 46.565 262 132 5 4 264 1 255 3.11e-69 214
MS.gene005027.t1 AT2G02250 44.318 264 137 6 4 264 47 303 1.54e-68 214
MS.gene005027.t1 AT2G02230 38.411 302 140 7 7 265 35 333 4.07e-64 204
MS.gene005027.t1 AT1G09155 41.935 279 141 7 7 265 3 280 4.24e-62 197
MS.gene005027.t1 AT2G02350 40.377 265 148 6 4 264 24 282 4.39e-59 189
MS.gene005027.t1 AT1G56250 42.294 279 140 7 7 265 4 281 4.25e-58 187
MS.gene005027.t1 AT1G56240 41.727 278 141 7 7 264 4 280 1.12e-57 186
MS.gene005027.t1 AT2G02310 37.262 263 157 4 6 265 47 304 8.51e-55 179
MS.gene005027.t1 AT2G02320 40.226 266 143 7 6 264 42 298 2.19e-53 175
MS.gene005027.t1 AT2G02300 38.148 270 137 8 4 265 34 281 2.95e-49 164
MS.gene005027.t1 AT5G24560 36.538 260 93 6 6 265 5 192 4.68e-48 158
MS.gene005027.t1 AT3G53000 27.698 278 170 8 4 264 21 284 1.68e-30 115
MS.gene005027.t1 AT2G02350 38.690 168 96 5 101 264 1 165 7.28e-30 110
MS.gene005027.t1 AT1G33920 31.844 179 90 6 96 265 9 164 5.69e-19 82.0
MS.gene005027.t1 AT3G61060 24.907 269 178 7 6 265 27 280 2.02e-18 83.2
MS.gene005027.t1 AT1G63090 29.557 203 121 6 4 189 26 223 1.58e-17 80.5
MS.gene005027.t1 AT3G61060 23.381 278 172 6 6 265 27 281 1.80e-17 80.5
MS.gene005027.t1 AT4G19850 31.868 182 92 8 94 265 17 176 2.09e-17 78.2
MS.gene005027.t1 AT4G19850 32.418 182 91 8 94 265 59 218 2.21e-17 79.0
MS.gene005027.t1 AT4G19840 31.176 170 96 5 99 265 94 245 2.97e-17 79.3
MS.gene005027.t1 AT1G12710 24.460 278 169 6 4 264 28 281 4.56e-17 79.3
MS.gene005027.t1 AT1G12710 30.000 160 106 3 4 160 28 184 1.27e-13 70.1
MS.gene005027.t1 AT5G52120 24.483 290 166 7 1 264 18 280 1.83e-13 69.3

Find 70 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCTGTATATTGAGTATT+TGG 0.131565 1.3:+56392840 None:intergenic
CTAGATCTCTTGCAATTGTT+TGG 0.246175 1.3:-56394390 MS.gene005027:CDS
AAAAGGAATGACAGAGATTC+AGG 0.277184 1.3:-56394820 None:intergenic
TAGATCTCTTGCAATTGTTT+GGG 0.285923 1.3:-56394389 MS.gene005027:CDS
TGGAGATAAAGGCTGGTAAT+TGG 0.287191 1.3:-56392566 MS.gene005027:CDS
AAGCTGTATATTGAGTATTT+GGG 0.314170 1.3:+56392841 None:intergenic
TTCTTGAAGGAATAGAAATT+AGG 0.317502 1.3:-56392530 MS.gene005027:CDS
CATCATCGATCATGATAATA+AGG 0.320160 1.3:-56394574 MS.gene005027:intron
GGATTCCTTTGCCTGATTCC+AGG 0.335609 1.3:-56394342 MS.gene005027:intron
TCAACAAGCTTATCAACTTC+AGG 0.340561 1.3:+56392912 None:intergenic
GATATTTCATCTATCATCTC+AGG 0.362347 1.3:-56394663 MS.gene005027:CDS
GATGAGTTTGTTGGAGATAA+AGG 0.363302 1.3:-56392577 MS.gene005027:CDS
ATACCTTCCACTTCCACATT+TGG 0.377228 1.3:+56392711 None:intergenic
TTTCAATTGGTTAGAAAGAG+TGG 0.401836 1.3:-56394436 MS.gene005027:CDS
CCTCCGATTCCGACGCTGTA+TGG 0.406897 1.3:-56394704 MS.gene005027:CDS
GCTGCTTAATTGTGTTACTT+AGG 0.411610 1.3:+56392507 None:intergenic
ATAATAAGCACTATTGGAAC+TGG 0.417736 1.3:-56394363 MS.gene005027:CDS
TAGTACTAAAATTGTCTGTT+TGG 0.420764 1.3:-56392736 MS.gene005027:CDS
GACAGAGATTCAGGATTTGC+CGG 0.423087 1.3:-56394811 MS.gene005027:CDS
AAGAGTGGTCTCTTTCTTGA+AGG 0.428845 1.3:-56392543 MS.gene005027:CDS
ATTCCATACAGCGTCGGAAT+CGG 0.440337 1.3:+56394701 None:intergenic
TGGAGTTGTACGAGAGACTA+TGG 0.442874 1.3:+56394773 None:intergenic
GGGGTGATAATAAGCACTAT+TGG 0.451906 1.3:-56394369 MS.gene005027:CDS
GGGTGGTTGGAGATTGAGAT+GGG 0.458032 1.3:-56392639 MS.gene005027:CDS
GCGCTAACTAACCTGGAATC+AGG 0.472883 1.3:+56394331 None:intergenic
AGAAGTCCTGATGAGTTTGT+TGG 0.481141 1.3:-56392586 MS.gene005027:CDS
ATGGCGGCAATGCATCCTTC+CGG 0.482859 1.3:+56394792 None:intergenic
CGTCCTAGTGTGAGAAGCGA+TGG 0.485861 1.3:-56392660 MS.gene005027:CDS
TTATCTCCAACAAACTCATC+AGG 0.495784 1.3:+56392580 None:intergenic
TTATCATGATCGATGATGAC+AGG 0.505190 1.3:+56394579 None:intergenic
GTAGGAGCGTTGGCGAGTAA+AGG 0.512124 1.3:+56394636 None:intergenic
AGTTTGTTGGAGATAAAGGC+TGG 0.513728 1.3:-56392573 MS.gene005027:CDS
TGGGTGGTTGGAGATTGAGA+TGG 0.517146 1.3:-56392640 MS.gene005027:CDS
GAGTCTCTGCCGGCGTCGAG+TGG 0.524622 1.3:+56394753 None:intergenic
CAACAAGCTTATCAACTTCA+GGG 0.526604 1.3:+56392913 None:intergenic
ATGCAGCATAACAGAGCAGT+AGG 0.534871 1.3:-56392690 MS.gene005027:CDS
CGTCGGAATCGGAGGCTGAT+CGG 0.538969 1.3:+56394712 None:intergenic
CACCCATCGCTTCTCACACT+AGG 0.543006 1.3:+56392657 None:intergenic
CCATACAGCGTCGGAATCGG+AGG 0.547740 1.3:+56394704 None:intergenic
AGATCTCTTGCAATTGTTTG+GGG 0.552612 1.3:-56394388 MS.gene005027:CDS
GAGATTCAGGATTTGCCGGA+AGG 0.560627 1.3:-56394807 MS.gene005027:CDS
GTTCAAAATGATTGATGCGT+GGG 0.567046 1.3:-56392811 MS.gene005027:CDS
TTTGGATCCAAATGTGGAAG+TGG 0.569537 1.3:-56392718 MS.gene005027:CDS
ATGATAGATGAAATATCAGA+AGG 0.573253 1.3:+56394669 None:intergenic
TGTGAGAAGCGATGGGTGGT+TGG 0.576323 1.3:-56392652 MS.gene005027:CDS
ATATTTCATCTATCATCTCA+GGG 0.577226 1.3:-56394662 MS.gene005027:CDS
GATCCAAATGTGGAAGTGGA+AGG 0.579730 1.3:-56392714 MS.gene005027:CDS
CGTCCTGTGGAGTTATCAGT+TGG 0.583128 1.3:-56392777 MS.gene005027:CDS
GTATGTTTGCTAGAAATTCG+TGG 0.589897 1.3:-56392888 MS.gene005027:CDS
AAGGCTGGTAATTGGAAGAG+TGG 0.592463 1.3:-56392558 MS.gene005027:CDS
GTGGTTGGAGATTGAGATGG+GGG 0.596500 1.3:-56392637 MS.gene005027:CDS
TTATCAGTTGGTGTCGAAGG+TGG 0.605148 1.3:-56392765 MS.gene005027:CDS
ACACCAACTGATAACTCCAC+AGG 0.607721 1.3:+56392774 None:intergenic
AGCTGTATATTGAGTATTTG+GGG 0.611231 1.3:+56392842 None:intergenic
AGAAACGACAGAGTCTCTGC+CGG 0.615620 1.3:+56394743 None:intergenic
GGTGGTTGGAGATTGAGATG+GGG 0.619250 1.3:-56392638 MS.gene005027:CDS
GAGTTATCAGTTGGTGTCGA+AGG 0.620810 1.3:-56392768 MS.gene005027:CDS
TGTCTGTTTGGATCCAAATG+TGG 0.625217 1.3:-56392724 MS.gene005027:CDS
ACTAACCTGGAATCAGGCAA+AGG 0.635048 1.3:+56394337 None:intergenic
GGGATTTCAGAACCGTCCTG+TGG 0.635758 1.3:-56392790 MS.gene005027:CDS
GTCCTAGTGTGAGAAGCGAT+GGG 0.643186 1.3:-56392659 MS.gene005027:CDS
TGTTCAAAATGATTGATGCG+TGG 0.644329 1.3:-56392812 MS.gene005027:CDS
TATCATGATCGATGATGACA+GGG 0.656082 1.3:+56394580 None:intergenic
TTCAAAATGATTGATGCGTG+GGG 0.672657 1.3:-56392810 MS.gene005027:CDS
AAAACGATTCCATACAGCGT+CGG 0.672667 1.3:+56394695 None:intergenic
AGTATTTGGGGACAGAACAA+CGG 0.674978 1.3:+56392854 None:intergenic
CTAGTGTGAGAAGCGATGGG+TGG 0.709944 1.3:-56392656 MS.gene005027:CDS
CAACTGATAACTCCACAGGA+CGG 0.710853 1.3:+56392778 None:intergenic
CGTACAACTCCACTCGACGC+CGG 0.717247 1.3:-56394762 MS.gene005027:CDS
AGTTGTACGAGAGACTATGG+CGG 0.789727 1.3:+56394776 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr1.3:56394284-56394265 None:intergenic 0.0%
!! AATAGTATCTAGTATTAATT+AGG + chr1.3:56393070-56393089 None:intergenic 15.0%
!! ATTCAAAAAGAATAACAAAA+AGG - chr1.3:56393296-56393315 MS.gene005027:intron 15.0%
!! CTTAATATTCGATAAATTGA+CGG + chr1.3:56392804-56392823 None:intergenic 20.0%
!! GATGCATTCAAAAATATATA+GGG + chr1.3:56393717-56393736 None:intergenic 20.0%
!! TGATGCATTCAAAAATATAT+AGG + chr1.3:56393718-56393737 None:intergenic 20.0%
!! TTGTAAAGTAACAAACAAAT+TGG + chr1.3:56393766-56393785 None:intergenic 20.0%
!!! AAAACTCTGAAAATTTTTGA+AGG + chr1.3:56392881-56392900 None:intergenic 20.0%
!!! AAATTTTCAGAGTTTTCAAT+TGG - chr1.3:56392885-56392904 MS.gene005027:CDS 20.0%
!!! ATTGAACATGCTTTAAATTT+GGG + chr1.3:56393465-56393484 None:intergenic 20.0%
!!! GTAAAATTTCTAAGAAAACA+TGG + chr1.3:56393909-56393928 None:intergenic 20.0%
!!! TGGTCAGATATTTTAAAATT+TGG + chr1.3:56393746-56393765 None:intergenic 20.0%
! AAGCTGTATATTGAGTATTT+GGG + chr1.3:56394496-56394515 None:intergenic 25.0%
! ATACCATATATCAAAATCCA+TGG - chr1.3:56393413-56393432 MS.gene005027:intron 25.0%
! ATATTTCATCTATCATCTCA+GGG - chr1.3:56392672-56392691 MS.gene005027:CDS 25.0%
! ATGATAGATGAAATATCAGA+AGG + chr1.3:56392668-56392687 None:intergenic 25.0%
! CATTCAAAAATATATAGGGT+CGG + chr1.3:56393713-56393732 None:intergenic 25.0%
! CGTCAATTTATCGAATATTA+AGG - chr1.3:56392802-56392821 MS.gene005027:CDS 25.0%
! TAAGCTGTATATTGAGTATT+TGG + chr1.3:56394497-56394516 None:intergenic 25.0%
! TAGTACTAAAATTGTCTGTT+TGG - chr1.3:56394598-56394617 MS.gene005027:CDS 25.0%
! TTCTTGAAGGAATAGAAATT+AGG - chr1.3:56394804-56394823 MS.gene005027:CDS 25.0%
!! CTTTGTTTGGTAAAAAATAG+TGG + chr1.3:56393200-56393219 None:intergenic 25.0%
!! GATTGAACATGCTTTAAATT+TGG + chr1.3:56393466-56393485 None:intergenic 25.0%
!! TCAACTTTTCTCAGTTATTA+TGG - chr1.3:56394357-56394376 MS.gene005027:CDS 25.0%
!!! AAAAATAGTGGATAGTTGAT+AGG + chr1.3:56393188-56393207 None:intergenic 25.0%
!!! AAAGCCTTGTCATTTTTTAT+GGG - chr1.3:56393216-56393235 MS.gene005027:intron 25.0%
!!! ATGGATTTTGATATATGGTA+TGG + chr1.3:56393414-56393433 None:intergenic 25.0%
!!! TAAGTTATATATGCCGTTTT+AGG + chr1.3:56394138-56394157 None:intergenic 25.0%
ACCTTATGCAAAAGATTGAA+TGG + chr1.3:56393965-56393984 None:intergenic 30.0%
AGCTGTATATTGAGTATTTG+GGG + chr1.3:56394495-56394514 None:intergenic 30.0%
AGTGATCAATTACTGATGAT+GGG - chr1.3:56393264-56393283 MS.gene005027:intron 30.0%
ATAATAAGCACTATTGGAAC+TGG - chr1.3:56392971-56392990 MS.gene005027:intron 30.0%
CATCATCGATCATGATAATA+AGG - chr1.3:56392760-56392779 MS.gene005027:CDS 30.0%
GAATGTTGGATTTCCTAAAA+CGG - chr1.3:56394122-56394141 MS.gene005027:intron 30.0%
GATATTTCATCTATCATCTC+AGG - chr1.3:56392671-56392690 MS.gene005027:CDS 30.0%
GATCGTTAACTAAAAATTGC+AGG + chr1.3:56394222-56394241 None:intergenic 30.0%
GATTGTCACAAAATAAGAGT+TGG + chr1.3:56394004-56394023 None:intergenic 30.0%
TAGATCTCTTGCAATTGTTT+GGG - chr1.3:56392945-56392964 MS.gene005027:intron 30.0%
TAGTGATCAATTACTGATGA+TGG - chr1.3:56393263-56393282 MS.gene005027:intron 30.0%
TATTCGATAAATTGACGGTT+AGG + chr1.3:56392799-56392818 None:intergenic 30.0%
TCAGTAATTGATCACTAACA+TGG + chr1.3:56393260-56393279 None:intergenic 30.0%
TTTCAATTGGTTAGAAAGAG+TGG - chr1.3:56392898-56392917 MS.gene005027:CDS 30.0%
! TCCTTTTAGGCTTTTAGTAT+GGG - chr1.3:56394092-56394111 MS.gene005027:intron 30.0%
!! AAAAATGACAAGGCTTTGTT+TGG + chr1.3:56393213-56393232 None:intergenic 30.0%
!! AGACAATTTTAGTACTACTC+TGG + chr1.3:56394595-56394614 None:intergenic 30.0%
!! GTGTTTTATTACATGACAGA+TGG + chr1.3:56394335-56394354 None:intergenic 30.0%
!! TAGCCATGGATTTTGATATA+TGG + chr1.3:56393419-56393438 None:intergenic 30.0%
!! TTTGTGTACTACTTTTGAAC+AGG - chr1.3:56394396-56394415 MS.gene005027:CDS 30.0%
!!! AATTACTGATGATGGGTTTT+AGG - chr1.3:56393271-56393290 MS.gene005027:intron 30.0%
!!! AGATAGAGATCTTTTTTGGT+AGG + chr1.3:56392719-56392738 None:intergenic 30.0%
!!! AGCAAGATAGAGATCTTTTT+TGG + chr1.3:56392723-56392742 None:intergenic 30.0%
!!! ATTACTGATGATGGGTTTTA+GGG - chr1.3:56393272-56393291 MS.gene005027:intron 30.0%
!!! CAAAGCCTTGTCATTTTTTA+TGG - chr1.3:56393215-56393234 MS.gene005027:intron 30.0%
AATGGCCAAGGTAATTTGAT+GGG + chr1.3:56393947-56393966 None:intergenic 35.0%
AGATCTCTTGCAATTGTTTG+GGG - chr1.3:56392946-56392965 MS.gene005027:intron 35.0%
CAACAAGCTTATCAACTTCA+GGG + chr1.3:56394424-56394443 None:intergenic 35.0%
CAAGCCCATAAAAAATGACA+AGG + chr1.3:56393223-56393242 None:intergenic 35.0%
CACAAAATAAGAGTTGGAGT+TGG + chr1.3:56393998-56394017 None:intergenic 35.0%
CATCGATCATGATAATAAGG+TGG - chr1.3:56392763-56392782 MS.gene005027:CDS 35.0%
CCAACTATTCTTCACTAACT+TGG + chr1.3:56393379-56393398 None:intergenic 35.0%
CCAAGTTAGTGAAGAATAGT+TGG - chr1.3:56393376-56393395 MS.gene005027:intron 35.0%
CTAGATCTCTTGCAATTGTT+TGG - chr1.3:56392944-56392963 MS.gene005027:intron 35.0%
CTTACCAAAGAGACCTTAAT+CGG + chr1.3:56393118-56393137 None:intergenic 35.0%
GAAATCCCATCAAATTACCT+TGG - chr1.3:56393939-56393958 MS.gene005027:intron 35.0%
GATACTTAGCTGAAGTGATA+TGG + chr1.3:56393551-56393570 None:intergenic 35.0%
GATTAGAAGATGGCAAAAGT+CGG + chr1.3:56393357-56393376 None:intergenic 35.0%
GGTCGATAAATTAACAATGC+AGG + chr1.3:56394244-56394263 None:intergenic 35.0%
GTTCAAAATGATTGATGCGT+GGG - chr1.3:56394523-56394542 MS.gene005027:intron 35.0%
TATCATGATCGATGATGACA+GGG + chr1.3:56392757-56392776 None:intergenic 35.0%
TCAACAAGCTTATCAACTTC+AGG + chr1.3:56394425-56394444 None:intergenic 35.0%
TCCAAATTCTCTAAGTCACA+AGG + chr1.3:56393518-56393537 None:intergenic 35.0%
TCCCATACTAAAAGCCTAAA+AGG + chr1.3:56394096-56394115 None:intergenic 35.0%
TCCTTGTGACTTAGAGAATT+TGG - chr1.3:56393514-56393533 MS.gene005027:intron 35.0%
TGTTCAAAATGATTGATGCG+TGG - chr1.3:56394522-56394541 MS.gene005027:intron 35.0%
TTATCATGATCGATGATGAC+AGG + chr1.3:56392758-56392777 None:intergenic 35.0%
TTATCTCCAACAAACTCATC+AGG + chr1.3:56394757-56394776 None:intergenic 35.0%
TTCAAAATGATTGATGCGTG+GGG - chr1.3:56394524-56394543 MS.gene005027:intron 35.0%
! CACTAACTTGGATTAGAAGA+TGG + chr1.3:56393367-56393386 None:intergenic 35.0%
! GCCATTCAATCTTTTGCATA+AGG - chr1.3:56393961-56393980 MS.gene005027:intron 35.0%
! GTATGTTTGCTAGAAATTCG+TGG - chr1.3:56394446-56394465 MS.gene005027:intron 35.0%
! GTCCTTTTAGGCTTTTAGTA+TGG - chr1.3:56394091-56394110 MS.gene005027:intron 35.0%
! TTAGTGAAGAATAGTTGGTG+TGG - chr1.3:56393381-56393400 MS.gene005027:intron 35.0%
!! AATCAAACCAGTACCGATTA+AGG - chr1.3:56393102-56393121 MS.gene005027:intron 35.0%
!! GATGAGTTTGTTGGAGATAA+AGG - chr1.3:56394757-56394776 MS.gene005027:CDS 35.0%
!! TAATCGGTACTGGTTTGATT+CGG + chr1.3:56393102-56393121 None:intergenic 35.0%
!!! TTTTTTGATCCTGATTGCTG+CGG - chr1.3:56393684-56393703 MS.gene005027:intron 35.0%
AAAACGATTCCATACAGCGT+CGG + chr1.3:56392642-56392661 None:intergenic 40.0%
AAAGAGACCTTAATCGGTAC+TGG + chr1.3:56393112-56393131 None:intergenic 40.0%
AACTGCAGAGTTACAGAAGA+AGG + chr1.3:56393642-56393661 None:intergenic 40.0%
AAGAGTGGTCTCTTTCTTGA+AGG - chr1.3:56394791-56394810 MS.gene005027:CDS 40.0%
AAGTTAAGCGCTAACTAACC+TGG + chr1.3:56393013-56393032 None:intergenic 40.0%
ACTTAGCTGAAGTGATATGG+AGG + chr1.3:56393548-56393567 None:intergenic 40.0%
AGAAGTCCTGATGAGTTTGT+TGG - chr1.3:56394748-56394767 MS.gene005027:CDS 40.0%
AGTATTTGGGGACAGAACAA+CGG + chr1.3:56394483-56394502 None:intergenic 40.0%
ATACCTTCCACTTCCACATT+TGG + chr1.3:56394626-56394645 None:intergenic 40.0%
CGGTTAATTCTTAGCAGATG+AGG + chr1.3:56393337-56393356 None:intergenic 40.0%
GAATGGCCAAGGTAATTTGA+TGG + chr1.3:56393948-56393967 None:intergenic 40.0%
GAGTTACAGAAGAAGGATCT+TGG + chr1.3:56393635-56393654 None:intergenic 40.0%
GGGGTGATAATAAGCACTAT+TGG - chr1.3:56392965-56392984 MS.gene005027:intron 40.0%
GTATGGGAGAAGATGAATGT+TGG - chr1.3:56394108-56394127 MS.gene005027:intron 40.0%
TACATAGGCCAGATAGTGTA+AGG + chr1.3:56393828-56393847 None:intergenic 40.0%
TACATGTAGCATCTTCGATG+TGG + chr1.3:56393885-56393904 None:intergenic 40.0%
TCCTTAGTCCTTACACTATC+TGG - chr1.3:56393817-56393836 MS.gene005027:intron 40.0%
TGCAAAAGATTGAATGGCCA+AGG + chr1.3:56393959-56393978 None:intergenic 40.0%
TGGAGATAAAGGCTGGTAAT+TGG - chr1.3:56394768-56394787 MS.gene005027:CDS 40.0%
TGTCTGTTTGGATCCAAATG+TGG - chr1.3:56394610-56394629 MS.gene005027:CDS 40.0%
TTTGGATCCAAATGTGGAAG+TGG - chr1.3:56394616-56394635 MS.gene005027:CDS 40.0%
! AGAATAGTTGGTGTGGTGTT+AGG - chr1.3:56393388-56393407 MS.gene005027:intron 40.0%
! AGCAATGTCGATGTCCTTTT+AGG - chr1.3:56394079-56394098 MS.gene005027:intron 40.0%
! TAAATTTGGGTTTGAACCCG+AGG + chr1.3:56393452-56393471 None:intergenic 40.0%
! TTTTGCAACCAACTTCAGCT+TGG - chr1.3:56393605-56393624 MS.gene005027:intron 40.0%
!! AGTACCGATTAAGGTCTCTT+TGG - chr1.3:56393111-56393130 MS.gene005027:intron 40.0%
!! AGTTTGTTGGAGATAAAGGC+TGG - chr1.3:56394761-56394780 MS.gene005027:CDS 40.0%
!! GTTGATAGGCTAGCTTATAG+CGG + chr1.3:56393174-56393193 None:intergenic 40.0%
!!! ATCTTTTTTGGTAGGAGCGT+TGG + chr1.3:56392711-56392730 None:intergenic 40.0%
AAGGCTGGTAATTGGAAGAG+TGG - chr1.3:56394776-56394795 MS.gene005027:CDS 45.0%
ACACCAACTGATAACTCCAC+AGG + chr1.3:56394563-56394582 None:intergenic 45.0%
ACACTTATCACGAGAACCTG+AGG - chr1.3:56394051-56394070 MS.gene005027:intron 45.0%
ACTAACCTGGAATCAGGCAA+AGG + chr1.3:56393000-56393019 None:intergenic 45.0%
AGTTGTACGAGAGACTATGG+CGG + chr1.3:56392561-56392580 None:intergenic 45.0%
ATGCAGCATAACAGAGCAGT+AGG - chr1.3:56394644-56394663 MS.gene005027:CDS 45.0%
CAACTGATAACTCCACAGGA+CGG + chr1.3:56394559-56394578 None:intergenic 45.0%
GACAGAGATTCAGGATTTGC+CGG - chr1.3:56392523-56392542 MS.gene005027:CDS 45.0%
GATCCAAATGTGGAAGTGGA+AGG - chr1.3:56394620-56394639 MS.gene005027:CDS 45.0%
GCCAGATAGTGTAAGGACTA+AGG + chr1.3:56393821-56393840 None:intergenic 45.0%
GGCCTAGTAAGCTTCTACAT+AGG + chr1.3:56393843-56393862 None:intergenic 45.0%
GGCCTATGTAGAAGCTTACT+AGG - chr1.3:56393838-56393857 MS.gene005027:intron 45.0%
TCAGGTTCTCGTGATAAGTG+TGG + chr1.3:56394052-56394071 None:intergenic 45.0%
TGGAGTTGTACGAGAGACTA+TGG + chr1.3:56392564-56392583 None:intergenic 45.0%
! ATTCCATACAGCGTCGGAAT+CGG + chr1.3:56392636-56392655 None:intergenic 45.0%
!! GAGTTATCAGTTGGTGTCGA+AGG - chr1.3:56394566-56394585 MS.gene005027:intron 45.0%
!! TTATCAGTTGGTGTCGAAGG+TGG - chr1.3:56394569-56394588 MS.gene005027:intron 45.0%
AGAAACGACAGAGTCTCTGC+CGG + chr1.3:56392594-56392613 None:intergenic 50.0%
AGCTTACTAGGCCACATGTG+TGG - chr1.3:56393850-56393869 MS.gene005027:intron 50.0%
ATGGGGGAGTTCTTCAGTTC+AGG - chr1.3:56394713-56394732 MS.gene005027:CDS 50.0%
CGTCCTGTGGAGTTATCAGT+TGG - chr1.3:56394557-56394576 MS.gene005027:intron 50.0%
GAGATTCAGGATTTGCCGGA+AGG - chr1.3:56392527-56392546 MS.gene005027:CDS 50.0%
GCGCTAACTAACCTGGAATC+AGG + chr1.3:56393006-56393025 None:intergenic 50.0%
GGATTCCTTTGCCTGATTCC+AGG - chr1.3:56392992-56393011 MS.gene005027:intron 50.0%
GGGTGGTTGGAGATTGAGAT+GGG - chr1.3:56394695-56394714 MS.gene005027:CDS 50.0%
GGTGGTTGGAGATTGAGATG+GGG - chr1.3:56394696-56394715 MS.gene005027:CDS 50.0%
GTCCTAGTGTGAGAAGCGAT+GGG - chr1.3:56394675-56394694 MS.gene005027:CDS 50.0%
GTGGTTGGAGATTGAGATGG+GGG - chr1.3:56394697-56394716 MS.gene005027:CDS 50.0%
TCGACATTGCTATGTGCCTC+AGG + chr1.3:56394070-56394089 None:intergenic 50.0%
TGGGTGGTTGGAGATTGAGA+TGG - chr1.3:56394694-56394713 MS.gene005027:CDS 50.0%
! ATTTGGGTTTGAACCCGAGG+TGG + chr1.3:56393449-56393468 None:intergenic 50.0%
ATGGCGGCAATGCATCCTTC+CGG + chr1.3:56392545-56392564 None:intergenic 55.0%
ATGGCTAGCAGCTACCACCT+CGG - chr1.3:56393432-56393451 MS.gene005027:intron 55.0%
CACCCATCGCTTCTCACACT+AGG + chr1.3:56394680-56394699 None:intergenic 55.0%
CGTCCTAGTGTGAGAAGCGA+TGG - chr1.3:56394674-56394693 MS.gene005027:CDS 55.0%
CTAGTGTGAGAAGCGATGGG+TGG - chr1.3:56394678-56394697 MS.gene005027:CDS 55.0%
GGATCCAGTGTCCACACATG+TGG + chr1.3:56393864-56393883 None:intergenic 55.0%
GGGATTTCAGAACCGTCCTG+TGG - chr1.3:56394544-56394563 MS.gene005027:intron 55.0%
TAGGCCACATGTGTGGACAC+TGG - chr1.3:56393857-56393876 MS.gene005027:intron 55.0%
TGTGAGAAGCGATGGGTGGT+TGG - chr1.3:56394682-56394701 MS.gene005027:CDS 55.0%
TTGGCGCTCCAAGCTGAAGT+TGG + chr1.3:56393616-56393635 None:intergenic 55.0%
!! GTAGGAGCGTTGGCGAGTAA+AGG + chr1.3:56392701-56392720 None:intergenic 55.0%
CCTCCGATTCCGACGCTGTA+TGG - chr1.3:56392630-56392649 MS.gene005027:CDS 60.0%
CGTACAACTCCACTCGACGC+CGG - chr1.3:56392572-56392591 MS.gene005027:CDS 60.0%
CGTCGGAATCGGAGGCTGAT+CGG + chr1.3:56392625-56392644 None:intergenic 60.0%
GAGGTGGTAGCTGCTAGCCA+TGG + chr1.3:56393433-56393452 None:intergenic 60.0%
TGGCTAGCAGCTACCACCTC+GGG - chr1.3:56393433-56393452 MS.gene005027:intron 60.0%
! CCATACAGCGTCGGAATCGG+AGG + chr1.3:56392633-56392652 None:intergenic 60.0%
! GGTCGGTTTCCGCAGCAATC+AGG + chr1.3:56393696-56393715 None:intergenic 60.0%
! GAGTCTCTGCCGGCGTCGAG+TGG + chr1.3:56392584-56392603 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 56392521 56394835 56392521 ID=MS.gene005027
chr1.3 mRNA 56392521 56394835 56392521 ID=MS.gene005027.t1;Parent=MS.gene005027
chr1.3 exon 56394575 56394835 56394575 ID=MS.gene005027.t1.exon1;Parent=MS.gene005027.t1
chr1.3 CDS 56394575 56394835 56394575 ID=cds.MS.gene005027.t1;Parent=MS.gene005027.t1
chr1.3 exon 56394343 56394461 56394343 ID=MS.gene005027.t1.exon2;Parent=MS.gene005027.t1
chr1.3 CDS 56394343 56394461 56394343 ID=cds.MS.gene005027.t1;Parent=MS.gene005027.t1
chr1.3 exon 56392521 56392938 56392521 ID=MS.gene005027.t1.exon3;Parent=MS.gene005027.t1
chr1.3 CDS 56392521 56392938 56392521 ID=cds.MS.gene005027.t1;Parent=MS.gene005027.t1
Gene Sequence

>MS.gene005027

ATGACAGAGATTCAGGATTTGCCGGAAGGATGCATTGCCGCCATAGTCTCTCGTACAACTCCACTCGACGCCGGCAGAGACTCTGTCGTTTCTAAGACTTTCCGATCAGCCTCCGATTCCGACGCTGTATGGAATCGTTTTCTACCTTCTGATATTTCATCTATCATCTCAGGGTCTCCTTTACTCGCCAACGCTCCTACCAAAAAAGATCTCTATCTTGCTCTATCTGATCGCCCTGTCATCATCGATCATGATAATAAGGTGGTATTCTTCTTCCTAACCGTCAATTTATCGAATATTAAGGCTCATAATTGAATTGATTTTTTTAAGATGTTTAGTTCAGAATACGTTAACAAGCCTTCAAAAATTTTCAGAGTTTTCAATTGGTTAGAAAGAGTGGAAAAAAGTGTTACATGCTTTCTGCTAGATCTCTTGCAATTGTTTGGGGTGATAATAAGCACTATTGGAACTGGATTCCTTTGCCTGATTCCAGGTTAGTTAGCGCTTAACTTTTCTATATTTTTTCTTAATATATCTTGATTAACTCCTAATTAATACTAGATACTATTTCTTGTTCACCGAATCAAACCAGTACCGATTAAGGTCTCTTTGGTAAGATGCATATTTGAGTTTATAGCATAATAAGTCATCCGCTATAAGCTAGCCTATCAACTATCCACTATTTTTTACCAAACAAAGCCTTGTCATTTTTTATGGGCTTGAATGATTCTATTTGCCATGTTAGTGATCAATTACTGATGATGGGTTTTAGGGCATTCAAAAAGAATAACAAAAAGGTTGAATATGCTCTTTCCTCATCTGCTAAGAATTAACCGACTTTTGCCATCTTCTAATCCAAGTTAGTGAAGAATAGTTGGTGTGGTGTTAGGCCATACCATATATCAAAATCCATGGCTAGCAGCTACCACCTCGGGTTCAAACCCAAATTTAAAGCATGTTCAATCAAACAAATGCTTGCGAAAATTTCTCATGTCCTTGTGACTTAGAGAATTTGGAGTCTGTTCCTCCATATCACTTCAGCTAAGTATCAGCAACGTGTATGCGTGCTCTTCATTCAACTATCTTTTGCAACCAACTTCAGCTTGGAGCGCCAAGATCCTTCTTCTGTAACTCTGCAGTTTTTGCTTCATCTGCAGACTTTCTTTTTTGATCCTGATTGCTGCGGAAACCGACCCTATATATTTTTGAATGCATCATTTTACCAAATTTTAAAATATCTGACCAATTTGTTTGTTACTTTACAACTAAAGACGTAGTTCTTATTTTAAGACTTCATCCTTAGTCCTTACACTATCTGGCCTATGTAGAAGCTTACTAGGCCACATGTGTGGACACTGGATCCACATCGAAGATGCTACATGTAGCCATGTTTTCTTAGAAATTTTACTTTTTATCAAGAAATCCCATCAAATTACCTTGGCCATTCAATCTTTTGCATAAGGTTGTCATTTGTCCAACTCCAACTCTTATTTTGTGACAATCATGCAGTTGTCTATATTGCTTATATCCACACTTATCACGAGAACCTGAGGCACATAGCAATGTCGATGTCCTTTTAGGCTTTTAGTATGGGAGAAGATGAATGTTGGATTTCCTAAAACGGCATATATAACTTATTCACTAAGAAGTCTGTCATTTAGTTTCAGCTTGAAATACTTCAGTTATGCTTCGTAAAAGCCTGCAATTTTTAGTTAACGATCCTGCATTGTTAATTTATCGACCTATATATATATATATATATATATATATATATATATATATATGTATGTACACACACACACACACACACTCCATCTGTCATGTAATAAAACACTTTCAACTTTTCTCAGTTATTATGGTCTAATTTTTGCGTCTTTTGTGTACTACTTTTGAACAGGTTCCCTGAAGTTGATAAGCTTGTTGACGTATGTTTGCTAGAAATTCGTGGTGTGATAAACACCGTTGTTCTGTCCCCAAATACTCAATATACAGCTTATGTTGTGTTCAAAATGATTGATGCGTGGGGATTTCAGAACCGTCCTGTGGAGTTATCAGTTGGTGTCGAAGGTGGCCAGAGTAGTACTAAAATTGTCTGTTTGGATCCAAATGTGGAAGTGGAAGGTATGCAGCATAACAGAGCAGTAGGATTGCAACGTCCTAGTGTGAGAAGCGATGGGTGGTTGGAGATTGAGATGGGGGAGTTCTTCAGTTCAGGCATAGAAAATGAAGAAGTCCTGATGAGTTTGTTGGAGATAAAGGCTGGTAATTGGAAGAGTGGTCTCTTTCTTGAAGGAATAGAAATTAGGCCTAAGTAA

Protein sequence

>MS.gene005027.t1

MTEIQDLPEGCIAAIVSRTTPLDAGRDSVVSKTFRSASDSDAVWNRFLPSDISSIISGSPLLANAPTKKDLYLALSDRPVIIDHDNKSFQLVRKSGKKCYMLSARSLAIVWGDNKHYWNWIPLPDSRFPEVDKLVDVCLLEIRGVINTVVLSPNTQYTAYVVFKMIDAWGFQNRPVELSVGVEGGQSSTKIVCLDPNVEVEGMQHNRAVGLQRPSVRSDGWLEIEMGEFFSSGIENEEVLMSLLEIKAGNWKSGLFLEGIEIRPK