AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49185


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49185.t1 MTR_1g100597 93.907 279 13 2 1 279 1 275 0.0 531
MS.gene49185.t1 MTR_1g079370 73.188 276 63 1 1 276 1 265 6.46e-146 410
MS.gene49185.t1 MTR_1g079180 74.194 279 55 4 1 276 1 265 6.29e-144 405
MS.gene49185.t1 MTR_1g079260 70.423 284 70 3 1 279 1 275 2.53e-141 399
MS.gene49185.t1 MTR_1g079230 69.643 280 80 2 1 279 1 276 8.52e-140 395
MS.gene49185.t1 MTR_1g100613 80.417 240 47 0 20 259 5 244 1.41e-137 388
MS.gene49185.t1 MTR_1g079460 69.504 282 70 2 1 279 1 269 2.77e-137 388
MS.gene49185.t1 MTR_1g079200 70.819 281 60 4 1 276 1 264 4.26e-135 382
MS.gene49185.t1 MTR_1g079380 71.942 278 67 1 1 278 1 267 1.53e-133 380
MS.gene49185.t1 MTR_1g079850 69.014 284 83 3 1 279 1 284 6.26e-132 375
MS.gene49185.t1 MTR_3g006850 63.934 305 80 5 3 279 16 318 1.34e-122 353
MS.gene49185.t1 MTR_1g079250 65.734 286 86 6 1 279 1 281 2.50e-114 331
MS.gene49185.t1 MTR_1g026510 61.168 291 96 7 1 279 1 286 1.94e-112 326
MS.gene49185.t1 MTR_3g452600 61.594 276 91 2 4 279 10 270 6.70e-112 324
MS.gene49185.t1 MTR_3g450990 55.442 294 96 4 4 279 10 286 1.41e-99 293
MS.gene49185.t1 MTR_1g079410 55.396 278 105 4 5 276 9 273 5.67e-99 291
MS.gene49185.t1 MTR_2g079100 58.608 273 92 4 3 273 8 261 6.82e-98 288
MS.gene49185.t1 MTR_1g079350 54.355 287 108 6 1 276 1 275 1.08e-93 278
MS.gene49185.t1 MTR_1g079340 52.667 300 104 8 1 276 40 325 4.47e-85 258
MS.gene49185.t1 MTR_7g096300 58.397 262 83 5 1 256 1 242 1.85e-83 265
MS.gene49185.t1 MTR_1g079140 47.508 301 129 6 4 279 13 309 1.88e-83 253
MS.gene49185.t1 MTR_1g079400 47.872 282 122 3 5 276 13 279 1.34e-80 244
MS.gene49185.t1 MTR_1g078470 60.104 193 61 3 84 276 8 184 8.51e-74 224
MS.gene49185.t1 MTR_7g112550 44.291 289 137 10 2 276 5 283 7.72e-70 217
MS.gene49185.t1 MTR_1g083580 40.860 279 158 5 2 276 6 281 2.83e-65 206
MS.gene49185.t1 MTR_7g112560 39.711 277 145 7 4 277 1 258 3.78e-62 197
MS.gene49185.t1 MTR_1g079240 57.368 190 59 4 87 276 12 179 3.25e-61 192
MS.gene49185.t1 MTR_1g076870 70.149 134 35 2 128 256 2 135 1.97e-59 186
MS.gene49185.t1 MTR_4g023570 37.319 276 131 7 4 276 1 237 3.85e-52 171
MS.gene49185.t1 MTR_1g079210 66.667 123 40 1 129 250 7 129 6.89e-46 151
MS.gene49185.t1 MTR_1g079130 44.444 189 92 2 101 276 1 189 1.52e-44 149
MS.gene49185.t1 MTR_1g079350 60.584 137 41 3 1 128 1 133 2.22e-44 150
MS.gene49185.t1 MTR_2g042540 65.714 105 34 2 1 103 1 105 2.47e-37 129
MS.gene49185.t1 MTR_1g078460 71.264 87 25 0 1 87 64 150 8.35e-36 125
MS.gene49185.t1 MTR_7g096310 56.061 132 50 3 57 186 38 163 3.13e-35 125
MS.gene49185.t1 MTR_3g058640 54.867 113 38 1 128 240 7 106 4.07e-34 120
MS.gene49185.t1 MTR_7g103380 26.316 285 173 5 6 275 21 283 9.47e-30 114
MS.gene49185.t1 MTR_0113s0040 30.846 201 124 3 2 188 20 219 5.13e-24 98.6
MS.gene49185.t1 MTR_1g101390 38.621 145 86 2 2 144 26 169 6.03e-23 95.9
MS.gene49185.t1 MTR_1g079220 60.759 79 18 1 165 243 1 66 1.07e-22 89.4
MS.gene49185.t1 MTR_4g083970 26.818 220 126 4 63 277 102 291 1.84e-20 89.0
MS.gene49185.t1 MTR_0002s0020 30.539 167 106 3 6 165 24 187 1.04e-18 84.3
MS.gene49185.t1 MTR_4g102770 33.333 144 92 2 6 146 21 163 6.86e-18 82.0
MS.gene49185.t1 MTR_5g010800 30.137 146 95 4 6 147 19 161 7.84e-16 75.9
MS.gene49185.t1 MTR_1g079390 72.000 50 12 2 222 271 8 55 3.74e-15 68.6
MS.gene49185.t1 MTR_1g079190 73.171 41 11 0 228 268 134 174 2.38e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49185.t1 AT2G02360 42.909 275 134 5 4 275 14 268 2.03e-74 229
MS.gene49185.t1 AT1G80110 43.542 271 134 6 6 275 3 255 1.12e-67 211
MS.gene49185.t1 AT2G02240 42.336 274 138 5 4 275 61 316 1.33e-64 205
MS.gene49185.t1 AT2G02340 42.446 278 142 5 4 275 36 301 1.87e-64 204
MS.gene49185.t1 AT2G02230 37.540 309 156 7 4 279 32 336 3.30e-63 202
MS.gene49185.t1 AT2G02250 41.667 276 138 8 4 275 47 303 4.97e-63 201
MS.gene49185.t1 AT1G09155 41.935 279 152 6 7 276 3 280 6.84e-63 200
MS.gene49185.t1 AT1G56250 41.429 280 154 5 7 277 4 282 9.68e-61 194
MS.gene49185.t1 AT1G56240 41.007 278 154 5 7 275 4 280 3.05e-59 190
MS.gene49185.t1 AT2G02350 37.410 278 153 7 2 275 22 282 9.51e-57 184
MS.gene49185.t1 AT2G02310 35.507 276 159 4 4 276 45 304 1.13e-52 174
MS.gene49185.t1 AT2G02320 37.545 277 146 7 6 275 42 298 3.19e-49 165
MS.gene49185.t1 AT2G02300 34.875 281 142 9 4 276 34 281 2.48e-42 147
MS.gene49185.t1 AT5G24560 42.188 192 98 4 4 192 3 184 2.83e-42 144
MS.gene49185.t1 AT3G53000 28.179 291 171 7 3 278 20 287 3.14e-30 115
MS.gene49185.t1 AT2G02350 33.520 179 101 6 101 275 1 165 2.70e-26 102
MS.gene49185.t1 AT1G12710 25.517 290 164 7 3 275 27 281 2.10e-20 89.0
MS.gene49185.t1 AT1G63090 30.097 206 125 6 3 192 25 227 2.57e-19 85.9
MS.gene49185.t1 AT5G52120 24.749 299 165 8 1 275 18 280 1.57e-18 84.0
MS.gene49185.t1 AT3G61060 31.915 141 93 2 6 144 27 166 3.66e-18 82.8
MS.gene49185.t1 AT3G61060 30.496 141 96 1 6 144 27 167 2.81e-17 80.1
MS.gene49185.t1 AT4G19840 29.319 191 102 7 89 276 85 245 4.40e-15 73.6
MS.gene49185.t1 AT1G12710 25.581 301 192 8 3 275 27 323 1.91e-14 72.8

Find 80 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCTGCATACTGAGTATT+TGG 0.255011 1.1:-72422775 None:intergenic
TTCTGCCTGCGTTCTACATT+TGG 0.271945 1.1:-72422904 None:intergenic
CTTGTATACAAATTGATTGA+TGG 0.301820 1.1:+72422799 MS.gene49185:CDS
ATGGGAGAGTTCTTCAATTC+AGG 0.321358 1.1:+72423027 MS.gene49185:CDS
CATCATCGACGATGCCAAAA+AGG 0.324659 1.1:+72420891 MS.gene49185:CDS
CTAGATCTCTCGCTATTACT+TGG 0.338529 1.1:+72421855 MS.gene49185:CDS
CGCAGACATGGAAGACTTTA+CGG 0.338884 1.1:+72422928 MS.gene49185:CDS
AGCAAATGCTCCTTCCAAAA+AGG 0.353184 1.1:+72420837 MS.gene49185:CDS
TAGCACTAAAATTGTCTGTT+TGG 0.362941 1.1:+72422879 MS.gene49185:CDS
GATGAGTGTTATCGAGATAA+AGG 0.385187 1.1:+72423071 MS.gene49185:CDS
AGACGAAGATTAGCAACTTC+GGG 0.388577 1.1:-72422703 None:intergenic
TGAAATGCAGAGCTTTCAAT+TGG 0.399907 1.1:+72421796 MS.gene49185:intron
GGACCACTATGCCTGATTCC+AGG 0.401514 1.1:+72421903 MS.gene49185:CDS
CCGCCGATTCCGATGCCGTC+TGG 0.403257 1.1:+72420761 MS.gene49185:CDS
TAGATCTCTCGCTATTACTT+GGG 0.415079 1.1:+72421856 MS.gene49185:CDS
GAGAGTCTGCCGGCGTCAAC+AGG 0.416723 1.1:-72420712 None:intergenic
AGGAGTCGTACGAGACAGTA+TGG 0.422103 1.1:-72420692 None:intergenic
AAGGGGAATTTCTTTCTTGA+GGG 0.424911 1.1:+72423105 MS.gene49185:CDS
AAAATGGCCAACCTGGAATC+AGG 0.426615 1.1:-72421914 None:intergenic
TGATGATAGGTCGATCAGAT+AGG 0.426684 1.1:-72420873 None:intergenic
TTATCTCGATAACACTCATC+TGG 0.440534 1.1:-72423068 None:intergenic
ATTCCAGACGGCATCGGAAT+CGG 0.451722 1.1:-72420764 None:intergenic
GTTGCTTAATTGTCTACCTT+AGG 0.451895 1.1:-72423141 None:intergenic
CGCAGGCAGAACCGCAGACA+TGG 0.453913 1.1:+72422916 MS.gene49185:CDS
ATGATGACCGCTATTGGATC+TGG 0.457353 1.1:+72421882 MS.gene49185:CDS
TTGGCATCGTCGATGATGAT+AGG 0.465612 1.1:-72420886 None:intergenic
CAAGGGGAATTTCTTTCTTG+AGG 0.468108 1.1:+72423104 MS.gene49185:CDS
TACAAATTGATTGATGGCTA+TGG 0.469002 1.1:+72422805 MS.gene49185:CDS
GGGGTGATGATGACCGCTAT+TGG 0.473829 1.1:+72421876 MS.gene49185:CDS
ACAAATTGATTGATGGCTAT+GGG 0.489453 1.1:+72422806 MS.gene49185:CDS
CGTCCTTGTGTGAGAAGTGA+TGG 0.489686 1.1:+72422988 MS.gene49185:CDS
CTCAAGAAAGAAATTCCCCT+TGG 0.498320 1.1:-72423103 None:intergenic
ATGATAGAGTCGATGTCAGA+AGG 0.501608 1.1:-72420796 None:intergenic
AAGACGAAGATTAGCAACTT+CGG 0.509597 1.1:-72422704 None:intergenic
CTTCCTGTGGATTTATCTGT+CGG 0.516064 1.1:+72422838 MS.gene49185:CDS
GGCGGCAGAAAGGAAAGTCT+TGG 0.517109 1.1:-72420743 None:intergenic
TGATAGAGTCGATGTCAGAA+GGG 0.519983 1.1:-72420795 None:intergenic
GGGTTTGAAGATTTAGCAGA+AGG 0.520179 1.1:+72420658 MS.gene49185:CDS
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 1.1:+72423009 MS.gene49185:CDS
CATCGGAATCGGCGGCAGAA+AGG 0.542303 1.1:-72420753 None:intergenic
TGGGTGGTTGGAGATTGAGA+TGG 0.542699 1.1:+72423008 MS.gene49185:CDS
GTGTGGTGGCTCGAAATTCG+TGG 0.547967 1.1:+72422727 MS.gene49185:CDS
TGGGTTTGAGAACCTTCCTG+TGG 0.549562 1.1:+72422825 MS.gene49185:CDS
GATGATAGGTCGATCAGATA+GGG 0.551413 1.1:-72420872 None:intergenic
TGTGAGAAGTGATGGGTGGT+TGG 0.556044 1.1:+72422996 MS.gene49185:CDS
GATTTATCTGTCGGTGTCGA+AGG 0.557631 1.1:+72422847 MS.gene49185:CDS
CTAATCTTCGTCTTGTGTGG+TGG 0.562220 1.1:+72422713 MS.gene49185:CDS
TTGCTAATCTTCGTCTTGTG+TGG 0.565369 1.1:+72422710 MS.gene49185:CDS
AGTGTTATCGAGATAAAGGC+TGG 0.568289 1.1:+72423075 MS.gene49185:CDS
GGAAACGACGGAGAGTCTGC+CGG 0.570360 1.1:-72420722 None:intergenic
GAAGGAGCATTTGCTAGAGA+AGG 0.571483 1.1:-72420829 None:intergenic
CAACCTGGAATCAGGCATAG+TGG 0.580151 1.1:-72421906 None:intergenic
GAAGACTTTACGGTCGTGCG+AGG 0.580931 1.1:+72422938 MS.gene49185:CDS
GGGAATAGAAGTGAGGCCTA+AGG 0.588625 1.1:+72423125 MS.gene49185:CDS
AGGTTGCATGACAGAGTGGT+AGG 0.597534 1.1:+72422958 MS.gene49185:CDS
TTATCTGTCGGTGTCGAAGG+TGG 0.597798 1.1:+72422850 MS.gene49185:CDS
CACCCATCACTTCTCACACA+AGG 0.598274 1.1:-72422991 None:intergenic
ATAAAGGCTGGTGAGACCAA+GGG 0.599634 1.1:+72423087 MS.gene49185:CDS
GATAAAGGCTGGTGAGACCA+AGG 0.599999 1.1:+72423086 MS.gene49185:CDS
TTCTTGAGGGAATAGAAGTG+AGG 0.602948 1.1:+72423118 MS.gene49185:CDS
TGTGGTGGCTCGAAATTCGT+GGG 0.618223 1.1:+72422728 MS.gene49185:CDS
AGATCTCTCGCTATTACTTG+GGG 0.621524 1.1:+72421857 MS.gene49185:CDS
CCAGACGGCATCGGAATCGG+CGG 0.622067 1.1:-72420761 None:intergenic
GTCCTTGTGTGAGAAGTGAT+GGG 0.633145 1.1:+72422989 MS.gene49185:CDS
ACACCGACAGATAAATCCAC+AGG 0.642651 1.1:-72422841 None:intergenic
ATACTGAGTATTTGGAGACA+AGG 0.643026 1.1:-72422767 None:intergenic
AAAGTGATTCCAGACGGCAT+CGG 0.647589 1.1:-72420770 None:intergenic
TAAAGGCTGGTGAGACCAAG+GGG 0.647680 1.1:+72423088 MS.gene49185:CDS
TCACTTCTCACACAAGGACG+CGG 0.648694 1.1:-72422985 None:intergenic
TGGATCCAAATGTAGAACGC+AGG 0.654508 1.1:+72422899 MS.gene49185:CDS
AAGGAAAGTCTTGGAAACGA+CGG 0.661166 1.1:-72420734 None:intergenic
CGTAAAGTCTTCCATGTCTG+CGG 0.661378 1.1:-72422927 None:intergenic
AGGGAGAAAGTGATTCCAGA+CGG 0.665074 1.1:-72420776 None:intergenic
TGCGAGGTTGCATGACAGAG+TGG 0.676261 1.1:+72422954 MS.gene49185:CDS
CGACAGATAAATCCACAGGA+AGG 0.695590 1.1:-72422837 None:intergenic
GACGAAGATTAGCAACTTCG+GGG 0.697062 1.1:-72422702 None:intergenic
CGTACGACTCCTGTTGACGC+CGG 0.716965 1.1:+72420703 MS.gene49185:CDS
CTTGTGTGAGAAGTGATGGG+TGG 0.722396 1.1:+72422992 MS.gene49185:CDS
TAGTGGTCCAGATCCAATAG+CGG 0.737188 1.1:-72421889 None:intergenic
AGTCGTACGAGACAGTATGG+AGG 0.760723 1.1:-72420689 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATTATTTAAAAAAGAAA+TGG - chr1.1:72421294-72421313 None:intergenic 10.0%
!! TACATTTATTAGTATTATTA+GGG + chr1.1:72421105-72421124 MS.gene49185:intron 10.0%
!! AAAAAGTAAAACAAAAAAAG+AGG + chr1.1:72421630-72421649 MS.gene49185:intron 15.0%
!! AATAAAAATGAGTAAATTTG+GGG - chr1.1:72421945-72421964 None:intergenic 15.0%
!! CAATAAAAATGAGTAAATTT+GGG - chr1.1:72421946-72421965 None:intergenic 15.0%
!! GTACATTTATTAGTATTATT+AGG + chr1.1:72421104-72421123 MS.gene49185:intron 15.0%
!! TGAAATAATTTAGTTATCAT+TGG + chr1.1:72422430-72422449 MS.gene49185:intron 15.0%
!! AAAAAAAAGTTATTAGACAG+TGG - chr1.1:72422353-72422372 None:intergenic 20.0%
!! ATAAAAATGAGTAAATTTGG+GGG - chr1.1:72421944-72421963 None:intergenic 20.0%
!! ATTGATTGCTGTAAAATATA+TGG + chr1.1:72421527-72421546 MS.gene49185:intron 20.0%
!! CCAATAAAAATGAGTAAATT+TGG - chr1.1:72421947-72421966 None:intergenic 20.0%
!!! ACTGATTTTGATTAATTTGT+AGG - chr1.1:72421405-72421424 None:intergenic 20.0%
!!! CCAAATTTACTCATTTTTAT+TGG + chr1.1:72421944-72421963 MS.gene49185:intron 20.0%
!!! CTGATTTTGATTAATTTGTA+GGG - chr1.1:72421404-72421423 None:intergenic 20.0%
!!! TGATTTTGATTAATTTGTAG+GGG - chr1.1:72421403-72421422 None:intergenic 20.0%
! ATTGATTGTTCTTTCATGTT+AGG + chr1.1:72420981-72421000 MS.gene49185:intron 25.0%
! CTTGTATACAAATTGATTGA+TGG + chr1.1:72422799-72422818 MS.gene49185:CDS 25.0%
! GAACAATGTTAAAACAAACA+AGG - chr1.1:72421985-72422004 None:intergenic 25.0%
! GAATTGAGAAAAAGTTGAAA+AGG - chr1.1:72422643-72422662 None:intergenic 25.0%
! TGAGAAGATATAGAAAATAC+AGG - chr1.1:72421507-72421526 None:intergenic 25.0%
! TGCCATAATAAAAGAAATAG+CGG + chr1.1:72421676-72421695 MS.gene49185:intron 25.0%
! TTGATTGTTCTTTCATGTTA+GGG + chr1.1:72420982-72421001 MS.gene49185:intron 25.0%
! TTTCAATTGGATAGAAAAAG+TGG + chr1.1:72421809-72421828 MS.gene49185:CDS 25.0%
!! AATATGTGATGATACCTTTT+TGG - chr1.1:72420908-72420927 None:intergenic 25.0%
!! AATGCTAATAATAAGCCTTT+TGG + chr1.1:72421767-72421786 MS.gene49185:intron 25.0%
!! ATGCTAATAATAAGCCTTTT+GGG + chr1.1:72421768-72421787 MS.gene49185:intron 25.0%
!! GTTATTACTCTTTTTGATGT+TGG + chr1.1:72422524-72422543 MS.gene49185:intron 25.0%
!!! AACCGCTATTTCTTTTATTA+TGG - chr1.1:72421681-72421700 None:intergenic 25.0%
!!! CCTTTTTTAAATGCTTAGTT+CGG + chr1.1:72421744-72421763 MS.gene49185:intron 25.0%
AATTGTTCATTCCATTTCCT+TGG + chr1.1:72422022-72422041 MS.gene49185:intron 30.0%
AGATGAAAGTTTCCTTAATG+AGG - chr1.1:72422089-72422108 None:intergenic 30.0%
ATACGAAATATCCAAGGAAA+TGG - chr1.1:72422036-72422055 None:intergenic 30.0%
ATGAAAGTTTCCTTAATGAG+GGG - chr1.1:72422087-72422106 None:intergenic 30.0%
CCGAACTAAGCATTTAAAAA+AGG - chr1.1:72421747-72421766 None:intergenic 30.0%
GATGAAAGTTTCCTTAATGA+GGG - chr1.1:72422088-72422107 None:intergenic 30.0%
GTTAAAACAAACAAGGTAGA+AGG - chr1.1:72421978-72421997 None:intergenic 30.0%
TAGCACTAAAATTGTCTGTT+TGG + chr1.1:72422879-72422898 MS.gene49185:CDS 30.0%
TCAGCCAATATACATTTACA+GGG - chr1.1:72421466-72421485 None:intergenic 30.0%
TGCATTTCAATATACCCAAA+AGG - chr1.1:72421785-72421804 None:intergenic 30.0%
TTCAGCCAATATACATTTAC+AGG - chr1.1:72421467-72421486 None:intergenic 30.0%
TTGAATATACCCATAGTCTT+TGG + chr1.1:72422134-72422153 MS.gene49185:intron 30.0%
! ACAAATTGATTGATGGCTAT+GGG + chr1.1:72422806-72422825 MS.gene49185:CDS 30.0%
! TACAAATTGATTGATGGCTA+TGG + chr1.1:72422805-72422824 MS.gene49185:CDS 30.0%
! TCATCATCGTCTGAAATATT+AGG + chr1.1:72420928-72420947 MS.gene49185:intron 30.0%
!! ACAAGAAGTATTCACTTAGA+AGG - chr1.1:72422265-72422284 None:intergenic 30.0%
!! AGACAATTTTAGTGCTACTA+TGG - chr1.1:72422876-72422895 None:intergenic 30.0%
!!! ACTGCATTTTGTTATTCTTG+AGG - chr1.1:72421603-72421622 None:intergenic 30.0%
!!! GAGCTGTTTCAAAGTTTTTT+TGG + chr1.1:72422486-72422505 MS.gene49185:intron 30.0%
AAAACAAACAAGGTAGAAGG+TGG - chr1.1:72421975-72421994 None:intergenic 35.0%
AAAATGAGTAAATTTGGGGG+AGG - chr1.1:72421941-72421960 None:intergenic 35.0%
AACCTCAATAACAGTGATGT+TGG + chr1.1:72422326-72422345 MS.gene49185:intron 35.0%
AAGACGAAGATTAGCAACTT+CGG - chr1.1:72422707-72422726 None:intergenic 35.0%
AAGGGGAATTTCTTTCTTGA+GGG + chr1.1:72423105-72423124 MS.gene49185:CDS 35.0%
AATGAACAATTCACCGAGAA+AGG - chr1.1:72422013-72422032 None:intergenic 35.0%
ACTCAGATACGAAATATCCA+AGG - chr1.1:72422042-72422061 None:intergenic 35.0%
AGAAAATACAGGCATAGTGT+CGG - chr1.1:72421496-72421515 None:intergenic 35.0%
AGAAGAAAAGCCAAAGACTA+TGG - chr1.1:72422147-72422166 None:intergenic 35.0%
ATACTGAGTATTTGGAGACA+AGG - chr1.1:72422770-72422789 None:intergenic 35.0%
CATTGTTCTTTCTCCTTTCT+CGG + chr1.1:72421997-72422016 MS.gene49185:intron 35.0%
CTTTACAAACCAAACCAACA+TGG - chr1.1:72421163-72421182 None:intergenic 35.0%
GAAGAAAAGCCAAAGACTAT+GGG - chr1.1:72422146-72422165 None:intergenic 35.0%
GATGAGTGTTATCGAGATAA+AGG + chr1.1:72423071-72423090 MS.gene49185:CDS 35.0%
TAAATTTGGGGGAGGAAAAA+TGG - chr1.1:72421933-72421952 None:intergenic 35.0%
TAAGCTGCATACTGAGTATT+TGG - chr1.1:72422778-72422797 None:intergenic 35.0%
TAGATCTCTCGCTATTACTT+GGG + chr1.1:72421856-72421875 MS.gene49185:CDS 35.0%
TCAGGTGTATGGTTAACTTT+GGG - chr1.1:72422301-72422320 None:intergenic 35.0%
TGAAATGCAGAGCTTTCAAT+TGG + chr1.1:72421796-72421815 MS.gene49185:intron 35.0%
TGATCATATTCCCCTCATTA+AGG + chr1.1:72422074-72422093 MS.gene49185:intron 35.0%
TGTGCCCTGTAAATGTATAT+TGG + chr1.1:72421459-72421478 MS.gene49185:intron 35.0%
TGTTATTGAGGTTCAGATTC+AGG - chr1.1:72422319-72422338 None:intergenic 35.0%
TGTTCATAAGTGTAAGTGCT+AGG - chr1.1:72421207-72421226 None:intergenic 35.0%
TTATCTCGATAACACTCATC+TGG - chr1.1:72423071-72423090 None:intergenic 35.0%
TTCAGGTGTATGGTTAACTT+TGG - chr1.1:72422302-72422321 None:intergenic 35.0%
! TCTGGACTTCTTCATTTTCA+AGG - chr1.1:72423053-72423072 None:intergenic 35.0%
! TTGAATGTAACCAAGAGTGT+CGG - chr1.1:72421266-72421285 None:intergenic 35.0%
AAACCAACATGGTGGTTCAA+CGG - chr1.1:72421152-72421171 None:intergenic 40.0%
AACCCACATGTTTGGTAAGT+GGG - chr1.1:72421657-72421676 None:intergenic 40.0%
AAGGAAAGTCTTGGAAACGA+CGG - chr1.1:72420737-72420756 None:intergenic 40.0%
ACAATTACCGAAAACGTGTC+TGG + chr1.1:72421224-72421243 MS.gene49185:intron 40.0%
AGACGAAGATTAGCAACTTC+GGG - chr1.1:72422706-72422725 None:intergenic 40.0%
AGATCTCTCGCTATTACTTG+GGG + chr1.1:72421857-72421876 MS.gene49185:CDS 40.0%
AGCAAATGCTCCTTCCAAAA+AGG + chr1.1:72420837-72420856 MS.gene49185:CDS 40.0%
AGTGTTATCGAGATAAAGGC+TGG + chr1.1:72423075-72423094 MS.gene49185:CDS 40.0%
ATGATAGAGTCGATGTCAGA+AGG - chr1.1:72420799-72420818 None:intergenic 40.0%
ATGGGAGAGTTCTTCAATTC+AGG + chr1.1:72423027-72423046 MS.gene49185:CDS 40.0%
ATTATGGCAACCCACATGTT+TGG - chr1.1:72421665-72421684 None:intergenic 40.0%
CAAGGGGAATTTCTTTCTTG+AGG + chr1.1:72423104-72423123 MS.gene49185:CDS 40.0%
CTAGATCTCTCGCTATTACT+TGG + chr1.1:72421855-72421874 MS.gene49185:CDS 40.0%
CTCAAGAAAGAAATTCCCCT+TGG - chr1.1:72423106-72423125 None:intergenic 40.0%
CTTCCTGTGGATTTATCTGT+CGG + chr1.1:72422838-72422857 MS.gene49185:CDS 40.0%
GACACACACAAACACAAACA+TGG - chr1.1:72421337-72421356 None:intergenic 40.0%
GACCAACATCACTGTTATTG+AGG - chr1.1:72422331-72422350 None:intergenic 40.0%
GATGATAGGTCGATCAGATA+GGG - chr1.1:72420875-72420894 None:intergenic 40.0%
GGATAGTTACACATTGACAG+CGG - chr1.1:72421316-72421335 None:intergenic 40.0%
GGGTTTGAAGATTTAGCAGA+AGG + chr1.1:72420658-72420677 MS.gene49185:CDS 40.0%
TACAAACCAAACCAACATGG+TGG - chr1.1:72421160-72421179 None:intergenic 40.0%
TGATAGAGTCGATGTCAGAA+GGG - chr1.1:72420798-72420817 None:intergenic 40.0%
TGATGATAGGTCGATCAGAT+AGG - chr1.1:72420876-72420895 None:intergenic 40.0%
TTCTTGAGGGAATAGAAGTG+AGG + chr1.1:72423118-72423137 MS.gene49185:CDS 40.0%
TTGCTAATCTTCGTCTTGTG+TGG + chr1.1:72422710-72422729 MS.gene49185:CDS 40.0%
! AGATAGAGAGCCTTTTTGGA+AGG - chr1.1:72420850-72420869 None:intergenic 40.0%
AAAATGGCCAACCTGGAATC+AGG - chr1.1:72421917-72421936 None:intergenic 45.0%
AAAGTGATTCCAGACGGCAT+CGG - chr1.1:72420773-72420792 None:intergenic 45.0%
ACACCGACAGATAAATCCAC+AGG - chr1.1:72422844-72422863 None:intergenic 45.0%
AGGGAGAAAGTGATTCCAGA+CGG - chr1.1:72420779-72420798 None:intergenic 45.0%
ATAAAGGCTGGTGAGACCAA+GGG + chr1.1:72423087-72423106 MS.gene49185:CDS 45.0%
ATGATGACCGCTATTGGATC+TGG + chr1.1:72421882-72421901 MS.gene49185:CDS 45.0%
ATGGTGGTTCAACGGAACAA+CGG - chr1.1:72421144-72421163 None:intergenic 45.0%
CAACCCACATGTTTGGTAAG+TGG - chr1.1:72421658-72421677 None:intergenic 45.0%
CATCATCGACGATGCCAAAA+AGG + chr1.1:72420891-72420910 MS.gene49185:CDS 45.0%
CATCTCTGCAACTTCTGTGT+TGG + chr1.1:72422672-72422691 MS.gene49185:intron 45.0%
CGACAGATAAATCCACAGGA+AGG - chr1.1:72422840-72422859 None:intergenic 45.0%
CGCAGACATGGAAGACTTTA+CGG + chr1.1:72422928-72422947 MS.gene49185:CDS 45.0%
CGTAAAGTCTTCCATGTCTG+CGG - chr1.1:72422930-72422949 None:intergenic 45.0%
CTAATCTTCGTCTTGTGTGG+TGG + chr1.1:72422713-72422732 MS.gene49185:CDS 45.0%
GACGAAGATTAGCAACTTCG+GGG - chr1.1:72422705-72422724 None:intergenic 45.0%
GAGGTTCAGATTCAGGTGTA+TGG - chr1.1:72422312-72422331 None:intergenic 45.0%
GCAAGATGAACGACAATGAG+AGG + chr1.1:72422111-72422130 MS.gene49185:intron 45.0%
GTCCCACTTACCAAACATGT+GGG + chr1.1:72421652-72421671 MS.gene49185:intron 45.0%
GTCCTTGTGTGAGAAGTGAT+GGG + chr1.1:72422989-72423008 MS.gene49185:CDS 45.0%
GTGTTTGTGTGTGTCTGTGT+CGG + chr1.1:72421342-72421361 MS.gene49185:intron 45.0%
TAGTGGTCCAGATCCAATAG+CGG - chr1.1:72421892-72421911 None:intergenic 45.0%
TGGATCCAAATGTAGAACGC+AGG + chr1.1:72422899-72422918 MS.gene49185:CDS 45.0%
TTCTGCCTGCGTTCTACATT+TGG - chr1.1:72422907-72422926 None:intergenic 45.0%
TTGGCATCGTCGATGATGAT+AGG - chr1.1:72420889-72420908 None:intergenic 45.0%
! GGCAAGATAGAGAGCCTTTT+TGG - chr1.1:72420854-72420873 None:intergenic 45.0%
! GTTGAACCACCATGTTGGTT+TGG + chr1.1:72421151-72421170 MS.gene49185:intron 45.0%
!! GAAGGAGCATTTGCTAGAGA+AGG - chr1.1:72420832-72420851 None:intergenic 45.0%
!! GATTTATCTGTCGGTGTCGA+AGG + chr1.1:72422847-72422866 MS.gene49185:CDS 45.0%
!! CATTAAATATATTATTAAAT+AGG + chr1.1:72421375-72421394 MS.gene49185:intron 5.0%
ACTGTTGTCACCGACACTCT+TGG + chr1.1:72421253-72421272 MS.gene49185:intron 50.0%
AGGAGTCGTACGAGACAGTA+TGG - chr1.1:72420695-72420714 None:intergenic 50.0%
AGGTTGCATGACAGAGTGGT+AGG + chr1.1:72422958-72422977 MS.gene49185:CDS 50.0%
AGTCGTACGAGACAGTATGG+AGG - chr1.1:72420692-72420711 None:intergenic 50.0%
CAACCTGGAATCAGGCATAG+TGG - chr1.1:72421909-72421928 None:intergenic 50.0%
CACCCATCACTTCTCACACA+AGG - chr1.1:72422994-72423013 None:intergenic 50.0%
CACTATGCCTGATTCCAGGT+TGG + chr1.1:72421907-72421926 MS.gene49185:intron 50.0%
CGTCCTTGTGTGAGAAGTGA+TGG + chr1.1:72422988-72423007 MS.gene49185:CDS 50.0%
CTGCAACTTCTGTGTTGGAC+AGG + chr1.1:72422677-72422696 MS.gene49185:intron 50.0%
GATAAAGGCTGGTGAGACCA+AGG + chr1.1:72423086-72423105 MS.gene49185:CDS 50.0%
GGGAATAGAAGTGAGGCCTA+AGG + chr1.1:72423125-72423144 MS.gene49185:CDS 50.0%
GGGTGGTTGGAGATTGAGAT+GGG + chr1.1:72423009-72423028 MS.gene49185:CDS 50.0%
GGTCCCACTTACCAAACATG+TGG + chr1.1:72421651-72421670 MS.gene49185:intron 50.0%
GTTCCGTTGAACCACCATGT+TGG + chr1.1:72421146-72421165 MS.gene49185:intron 50.0%
TAAAGGCTGGTGAGACCAAG+GGG + chr1.1:72423088-72423107 MS.gene49185:CDS 50.0%
TCACTTCTCACACAAGGACG+CGG - chr1.1:72422988-72423007 None:intergenic 50.0%
TGGGTGGTTGGAGATTGAGA+TGG + chr1.1:72423008-72423027 MS.gene49185:CDS 50.0%
TGGGTTTGAGAACCTTCCTG+TGG + chr1.1:72422825-72422844 MS.gene49185:CDS 50.0%
TGTGGTGGCTCGAAATTCGT+GGG + chr1.1:72422728-72422747 MS.gene49185:CDS 50.0%
! ATTCCAGACGGCATCGGAAT+CGG - chr1.1:72420767-72420786 None:intergenic 50.0%
! CTTGTGTGAGAAGTGATGGG+TGG + chr1.1:72422992-72423011 MS.gene49185:CDS 50.0%
! TCGGACACCAGACACGTTTT+CGG - chr1.1:72421234-72421253 None:intergenic 50.0%
!! AGAGTGTCGGTGACAACAGT+CGG - chr1.1:72421253-72421272 None:intergenic 50.0%
!! TGTGAGAAGTGATGGGTGGT+TGG + chr1.1:72422996-72423015 MS.gene49185:CDS 50.0%
!! TTATCTGTCGGTGTCGAAGG+TGG + chr1.1:72422850-72422869 MS.gene49185:CDS 50.0%
GAAGACTTTACGGTCGTGCG+AGG + chr1.1:72422938-72422957 MS.gene49185:CDS 55.0%
GGACCACTATGCCTGATTCC+AGG + chr1.1:72421903-72421922 MS.gene49185:CDS 55.0%
GGCGGCAGAAAGGAAAGTCT+TGG - chr1.1:72420746-72420765 None:intergenic 55.0%
GGGAGGAAAAATGGCCAACC+TGG - chr1.1:72421924-72421943 None:intergenic 55.0%
GTGTGGTGGCTCGAAATTCG+TGG + chr1.1:72422727-72422746 MS.gene49185:CDS 55.0%
TGCGAGGTTGCATGACAGAG+TGG + chr1.1:72422954-72422973 MS.gene49185:CDS 55.0%
! GGGGTGATGATGACCGCTAT+TGG + chr1.1:72421876-72421895 MS.gene49185:CDS 55.0%
CATCGGAATCGGCGGCAGAA+AGG - chr1.1:72420756-72420775 None:intergenic 60.0%
CGTACGACTCCTGTTGACGC+CGG + chr1.1:72420703-72420722 MS.gene49185:CDS 60.0%
GGAAACGACGGAGAGTCTGC+CGG - chr1.1:72420725-72420744 None:intergenic 60.0%
CGCAGGCAGAACCGCAGACA+TGG + chr1.1:72422916-72422935 MS.gene49185:CDS 65.0%
GAGAGTCTGCCGGCGTCAAC+AGG - chr1.1:72420715-72420734 None:intergenic 65.0%
! CCAGACGGCATCGGAATCGG+CGG - chr1.1:72420764-72420783 None:intergenic 65.0%
!! CCGCCGATTCCGATGCCGTC+TGG + chr1.1:72420761-72420780 MS.gene49185:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 72420652 72423158 72420652 ID=MS.gene49185
chr1.1 mRNA 72420652 72423158 72420652 ID=MS.gene49185.t1;Parent=MS.gene49185
chr1.1 exon 72420652 72420912 72420652 ID=MS.gene49185.t1.exon1;Parent=MS.gene49185.t1
chr1.1 CDS 72420652 72420912 72420652 ID=cds.MS.gene49185.t1;Parent=MS.gene49185.t1
chr1.1 exon 72421806 72421924 72421806 ID=MS.gene49185.t1.exon2;Parent=MS.gene49185.t1
chr1.1 CDS 72421806 72421924 72421806 ID=cds.MS.gene49185.t1;Parent=MS.gene49185.t1
chr1.1 exon 72422699 72423158 72422699 ID=MS.gene49185.t1.exon3;Parent=MS.gene49185.t1
chr1.1 CDS 72422699 72423158 72422699 ID=cds.MS.gene49185.t1;Parent=MS.gene49185.t1
Gene Sequence

>MS.gene49185

ATGACAGGGTTTGAAGATTTAGCAGAAGGATGCATTTCCTCCATACTGTCTCGTACGACTCCTGTTGACGCCGGCAGACTCTCCGTCGTTTCCAAGACTTTCCTTTCTGCCGCCGATTCCGATGCCGTCTGGAATCACTTTCTCCCTTCTGACATCGACTCTATCATCTCACAGTCACCTTCTCTAGCAAATGCTCCTTCCAAAAAGGCTCTCTATCTTGCCCTATCTGATCGACCTATCATCATCGACGATGCCAAAAAGGTATCATCACATATTTCATCATCGTCTGAAATATTAGGCTTTATTATCGTTGATCATACGTAAACTTAATTGATTGTTCTTTCATGTTAGGGCTTAAGATATTCACTGAACATTGATCATCAGAATTCACTTCTGCATGTATCTATAAATTACATGATCGCTTTGCAAATAACTTGTTTTATAATAATCTTGTACATTTATTAGTATTATTAGGGTAGTGCAGCTGAGCCGTTGTTCCGTTGAACCACCATGTTGGTTTGGTTTGTAAAGATATTCGATAGATTAGATCTACCTAGCACTTACACTTATGAACAATTACCGAAAACGTGTCTGGTGTCCGACTGTTGTCACCGACACTCTTGGTTACATTCAATTATGCCATTTCTTTTTTAAATAATTACCGCTGTCAATGTGTAACTATCCATGTTTGTGTTTGTGTGTGTCTGTGTCGGTGATTCATAGCATTAAATATATTATTAAATAGGTACCCCTACAAATTAATCAAAATCAGTTAACGATTTTGTTTATTTGTTTGTGCTTTTAAATTGTGCCCTGTAAATGTATATTGGCTGAAGAAAGTCCGACACTATGCCTGTATTTTCTATATCTTCTCAATTGATTGCTGTAAAATATATGGTGATTTTTTAAACAGTTATGCTATATAACGCGAGAGATTTCTCGCGAATTCCTCAAGAATAACAAAATGCAGTTGTAACAAAAAAGTAAAACAAAAAAAGAGGTCCCACTTACCAAACATGTGGGTTGCCATAATAAAAGAAATAGCGGTTCTTGATGTTTTCTTGAAAAAAAATTCGCTGAATTCAGCATTTTCCTTTTTTAAATGCTTAGTTCGGAATGCTAATAATAAGCCTTTTGGGTATATTGAAATGCAGAGCTTTCAATTGGATAGAAAAAGTGGAAACAAGTGTTACATGCTTGCTGCTAGATCTCTCGCTATTACTTGGGGTGATGATGACCGCTATTGGATCTGGACCACTATGCCTGATTCCAGGTTGGCCATTTTTCCTCCCCCAAATTTACTCATTTTTATTGGTTTCTCCACCTTCTACCTTGTTTGTTTTAACATTGTTCTTTCTCCTTTCTCGGTGAATTGTTCATTCCATTTCCTTGGATATTTCGTATCTGAGTTTATACTTTGATTGATCATATTCCCCTCATTAAGGAAACTTTCATCTATGCAAGATGAACGACAATGAGAGGTTGAATATACCCATAGTCTTTGGCTTTTCTTCTATGAAAGATGAAAAACAATGAGAAGTTGAATATACATAAAGAAGTTAAATGAAAATATTTTTCATTTCAGCTTCTCTCACTGTCTCTTCATTTTTCCTTCTAAGTGAATACTTCTTGTTAGACTATTCAATCCCAAAGTTAACCATACACCTGAATCTGAACCTCAATAACAGTGATGTTGGTCCACTGTCTAATAACTTTTTTTTATAGATAACAAACAATACAACTTAGTAACTGAGAAGTTTATCATAATCGATTACACTTGAAATAATTTAGTTATCATTGGTACAATATATGATAACTGATGTTTTTATTAGTTGAGCTGTTTCAAAGTTTTTTTGGTGAAAATATTTTGCTGTTATTACTCTTTTTGATGTTGGAAACTTTGATTCAACTCGCAAATTTTAGTTGATGAGCTTGCATTGTTTGTGTACGTACACATGTATAAATATTCTATTTATGATGTTATGAATCCTTTTCAACTTTTTCTCAATTCTTGTATTCTCATCTCTGCAACTTCTGTGTTGGACAGGTTCCCCGAAGTTGCTAATCTTCGTCTTGTGTGGTGGCTCGAAATTCGTGGGATGATTAACAATCTTGCCTTGTCTCCAAATACTCAGTATGCAGCTTATCTTGTATACAAATTGATTGATGGCTATGGGTTTGAGAACCTTCCTGTGGATTTATCTGTCGGTGTCGAAGGTGGCCATAGTAGCACTAAAATTGTCTGTTTGGATCCAAATGTAGAACGCAGGCAGAACCGCAGACATGGAAGACTTTACGGTCGTGCGAGGTTGCATGACAGAGTGGTAGGATTACCGCGTCCTTGTGTGAGAAGTGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCTTCAATTCAGGCCTTGAAAATGAAGAAGTCCAGATGAGTGTTATCGAGATAAAGGCTGGTGAGACCAAGGGGAATTTCTTTCTTGAGGGAATAGAAGTGAGGCCTAAGGTAGACAATTAA

Protein sequence

>MS.gene49185.t1

MTGFEDLAEGCISSILSRTTPVDAGRLSVVSKTFLSAADSDAVWNHFLPSDIDSIISQSPSLANAPSKKALYLALSDRPIIIDDAKKSFQLDRKSGNKCYMLAARSLAITWGDDDRYWIWTTMPDSRFPEVANLRLVWWLEIRGMINNLALSPNTQYAAYLVYKLIDGYGFENLPVDLSVGVEGGHSSTKIVCLDPNVERRQNRRHGRLYGRARLHDRVVGLPRPCVRSDGWLEIEMGEFFNSGLENEEVQMSVIEIKAGETKGNFFLEGIEVRPKVDN