Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49185.t1 | XP_013469665.1 | 93.9 | 279 | 13 | 2 | 1 | 279 | 1 | 275 | 1.60E-145 | 525.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49185.t1 | Q9ZVQ6 | 42.9 | 275 | 134 | 5 | 4 | 275 | 14 | 268 | 4.4e-59 | 229.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49185.t1 | G8A220 | 93.9 | 279 | 13 | 2 | 1 | 279 | 1 | 275 | 1.2e-145 | 525.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49185.t1 | MTR_1g100597 | 93.907 | 279 | 13 | 2 | 1 | 279 | 1 | 275 | 0.0 | 531 |
| MS.gene49185.t1 | MTR_1g079370 | 73.188 | 276 | 63 | 1 | 1 | 276 | 1 | 265 | 6.46e-146 | 410 |
| MS.gene49185.t1 | MTR_1g079180 | 74.194 | 279 | 55 | 4 | 1 | 276 | 1 | 265 | 6.29e-144 | 405 |
| MS.gene49185.t1 | MTR_1g079260 | 70.423 | 284 | 70 | 3 | 1 | 279 | 1 | 275 | 2.53e-141 | 399 |
| MS.gene49185.t1 | MTR_1g079230 | 69.643 | 280 | 80 | 2 | 1 | 279 | 1 | 276 | 8.52e-140 | 395 |
| MS.gene49185.t1 | MTR_1g100613 | 80.417 | 240 | 47 | 0 | 20 | 259 | 5 | 244 | 1.41e-137 | 388 |
| MS.gene49185.t1 | MTR_1g079460 | 69.504 | 282 | 70 | 2 | 1 | 279 | 1 | 269 | 2.77e-137 | 388 |
| MS.gene49185.t1 | MTR_1g079200 | 70.819 | 281 | 60 | 4 | 1 | 276 | 1 | 264 | 4.26e-135 | 382 |
| MS.gene49185.t1 | MTR_1g079380 | 71.942 | 278 | 67 | 1 | 1 | 278 | 1 | 267 | 1.53e-133 | 380 |
| MS.gene49185.t1 | MTR_1g079850 | 69.014 | 284 | 83 | 3 | 1 | 279 | 1 | 284 | 6.26e-132 | 375 |
| MS.gene49185.t1 | MTR_3g006850 | 63.934 | 305 | 80 | 5 | 3 | 279 | 16 | 318 | 1.34e-122 | 353 |
| MS.gene49185.t1 | MTR_1g079250 | 65.734 | 286 | 86 | 6 | 1 | 279 | 1 | 281 | 2.50e-114 | 331 |
| MS.gene49185.t1 | MTR_1g026510 | 61.168 | 291 | 96 | 7 | 1 | 279 | 1 | 286 | 1.94e-112 | 326 |
| MS.gene49185.t1 | MTR_3g452600 | 61.594 | 276 | 91 | 2 | 4 | 279 | 10 | 270 | 6.70e-112 | 324 |
| MS.gene49185.t1 | MTR_3g450990 | 55.442 | 294 | 96 | 4 | 4 | 279 | 10 | 286 | 1.41e-99 | 293 |
| MS.gene49185.t1 | MTR_1g079410 | 55.396 | 278 | 105 | 4 | 5 | 276 | 9 | 273 | 5.67e-99 | 291 |
| MS.gene49185.t1 | MTR_2g079100 | 58.608 | 273 | 92 | 4 | 3 | 273 | 8 | 261 | 6.82e-98 | 288 |
| MS.gene49185.t1 | MTR_1g079350 | 54.355 | 287 | 108 | 6 | 1 | 276 | 1 | 275 | 1.08e-93 | 278 |
| MS.gene49185.t1 | MTR_1g079340 | 52.667 | 300 | 104 | 8 | 1 | 276 | 40 | 325 | 4.47e-85 | 258 |
| MS.gene49185.t1 | MTR_7g096300 | 58.397 | 262 | 83 | 5 | 1 | 256 | 1 | 242 | 1.85e-83 | 265 |
| MS.gene49185.t1 | MTR_1g079140 | 47.508 | 301 | 129 | 6 | 4 | 279 | 13 | 309 | 1.88e-83 | 253 |
| MS.gene49185.t1 | MTR_1g079400 | 47.872 | 282 | 122 | 3 | 5 | 276 | 13 | 279 | 1.34e-80 | 244 |
| MS.gene49185.t1 | MTR_1g078470 | 60.104 | 193 | 61 | 3 | 84 | 276 | 8 | 184 | 8.51e-74 | 224 |
| MS.gene49185.t1 | MTR_7g112550 | 44.291 | 289 | 137 | 10 | 2 | 276 | 5 | 283 | 7.72e-70 | 217 |
| MS.gene49185.t1 | MTR_1g083580 | 40.860 | 279 | 158 | 5 | 2 | 276 | 6 | 281 | 2.83e-65 | 206 |
| MS.gene49185.t1 | MTR_7g112560 | 39.711 | 277 | 145 | 7 | 4 | 277 | 1 | 258 | 3.78e-62 | 197 |
| MS.gene49185.t1 | MTR_1g079240 | 57.368 | 190 | 59 | 4 | 87 | 276 | 12 | 179 | 3.25e-61 | 192 |
| MS.gene49185.t1 | MTR_1g076870 | 70.149 | 134 | 35 | 2 | 128 | 256 | 2 | 135 | 1.97e-59 | 186 |
| MS.gene49185.t1 | MTR_4g023570 | 37.319 | 276 | 131 | 7 | 4 | 276 | 1 | 237 | 3.85e-52 | 171 |
| MS.gene49185.t1 | MTR_1g079210 | 66.667 | 123 | 40 | 1 | 129 | 250 | 7 | 129 | 6.89e-46 | 151 |
| MS.gene49185.t1 | MTR_1g079130 | 44.444 | 189 | 92 | 2 | 101 | 276 | 1 | 189 | 1.52e-44 | 149 |
| MS.gene49185.t1 | MTR_1g079350 | 60.584 | 137 | 41 | 3 | 1 | 128 | 1 | 133 | 2.22e-44 | 150 |
| MS.gene49185.t1 | MTR_2g042540 | 65.714 | 105 | 34 | 2 | 1 | 103 | 1 | 105 | 2.47e-37 | 129 |
| MS.gene49185.t1 | MTR_1g078460 | 71.264 | 87 | 25 | 0 | 1 | 87 | 64 | 150 | 8.35e-36 | 125 |
| MS.gene49185.t1 | MTR_7g096310 | 56.061 | 132 | 50 | 3 | 57 | 186 | 38 | 163 | 3.13e-35 | 125 |
| MS.gene49185.t1 | MTR_3g058640 | 54.867 | 113 | 38 | 1 | 128 | 240 | 7 | 106 | 4.07e-34 | 120 |
| MS.gene49185.t1 | MTR_7g103380 | 26.316 | 285 | 173 | 5 | 6 | 275 | 21 | 283 | 9.47e-30 | 114 |
| MS.gene49185.t1 | MTR_0113s0040 | 30.846 | 201 | 124 | 3 | 2 | 188 | 20 | 219 | 5.13e-24 | 98.6 |
| MS.gene49185.t1 | MTR_1g101390 | 38.621 | 145 | 86 | 2 | 2 | 144 | 26 | 169 | 6.03e-23 | 95.9 |
| MS.gene49185.t1 | MTR_1g079220 | 60.759 | 79 | 18 | 1 | 165 | 243 | 1 | 66 | 1.07e-22 | 89.4 |
| MS.gene49185.t1 | MTR_4g083970 | 26.818 | 220 | 126 | 4 | 63 | 277 | 102 | 291 | 1.84e-20 | 89.0 |
| MS.gene49185.t1 | MTR_0002s0020 | 30.539 | 167 | 106 | 3 | 6 | 165 | 24 | 187 | 1.04e-18 | 84.3 |
| MS.gene49185.t1 | MTR_4g102770 | 33.333 | 144 | 92 | 2 | 6 | 146 | 21 | 163 | 6.86e-18 | 82.0 |
| MS.gene49185.t1 | MTR_5g010800 | 30.137 | 146 | 95 | 4 | 6 | 147 | 19 | 161 | 7.84e-16 | 75.9 |
| MS.gene49185.t1 | MTR_1g079390 | 72.000 | 50 | 12 | 2 | 222 | 271 | 8 | 55 | 3.74e-15 | 68.6 |
| MS.gene49185.t1 | MTR_1g079190 | 73.171 | 41 | 11 | 0 | 228 | 268 | 134 | 174 | 2.38e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49185.t1 | AT2G02360 | 42.909 | 275 | 134 | 5 | 4 | 275 | 14 | 268 | 2.03e-74 | 229 |
| MS.gene49185.t1 | AT1G80110 | 43.542 | 271 | 134 | 6 | 6 | 275 | 3 | 255 | 1.12e-67 | 211 |
| MS.gene49185.t1 | AT2G02240 | 42.336 | 274 | 138 | 5 | 4 | 275 | 61 | 316 | 1.33e-64 | 205 |
| MS.gene49185.t1 | AT2G02340 | 42.446 | 278 | 142 | 5 | 4 | 275 | 36 | 301 | 1.87e-64 | 204 |
| MS.gene49185.t1 | AT2G02230 | 37.540 | 309 | 156 | 7 | 4 | 279 | 32 | 336 | 3.30e-63 | 202 |
| MS.gene49185.t1 | AT2G02250 | 41.667 | 276 | 138 | 8 | 4 | 275 | 47 | 303 | 4.97e-63 | 201 |
| MS.gene49185.t1 | AT1G09155 | 41.935 | 279 | 152 | 6 | 7 | 276 | 3 | 280 | 6.84e-63 | 200 |
| MS.gene49185.t1 | AT1G56250 | 41.429 | 280 | 154 | 5 | 7 | 277 | 4 | 282 | 9.68e-61 | 194 |
| MS.gene49185.t1 | AT1G56240 | 41.007 | 278 | 154 | 5 | 7 | 275 | 4 | 280 | 3.05e-59 | 190 |
| MS.gene49185.t1 | AT2G02350 | 37.410 | 278 | 153 | 7 | 2 | 275 | 22 | 282 | 9.51e-57 | 184 |
| MS.gene49185.t1 | AT2G02310 | 35.507 | 276 | 159 | 4 | 4 | 276 | 45 | 304 | 1.13e-52 | 174 |
| MS.gene49185.t1 | AT2G02320 | 37.545 | 277 | 146 | 7 | 6 | 275 | 42 | 298 | 3.19e-49 | 165 |
| MS.gene49185.t1 | AT2G02300 | 34.875 | 281 | 142 | 9 | 4 | 276 | 34 | 281 | 2.48e-42 | 147 |
| MS.gene49185.t1 | AT5G24560 | 42.188 | 192 | 98 | 4 | 4 | 192 | 3 | 184 | 2.83e-42 | 144 |
| MS.gene49185.t1 | AT3G53000 | 28.179 | 291 | 171 | 7 | 3 | 278 | 20 | 287 | 3.14e-30 | 115 |
| MS.gene49185.t1 | AT2G02350 | 33.520 | 179 | 101 | 6 | 101 | 275 | 1 | 165 | 2.70e-26 | 102 |
| MS.gene49185.t1 | AT1G12710 | 25.517 | 290 | 164 | 7 | 3 | 275 | 27 | 281 | 2.10e-20 | 89.0 |
| MS.gene49185.t1 | AT1G63090 | 30.097 | 206 | 125 | 6 | 3 | 192 | 25 | 227 | 2.57e-19 | 85.9 |
| MS.gene49185.t1 | AT5G52120 | 24.749 | 299 | 165 | 8 | 1 | 275 | 18 | 280 | 1.57e-18 | 84.0 |
| MS.gene49185.t1 | AT3G61060 | 31.915 | 141 | 93 | 2 | 6 | 144 | 27 | 166 | 3.66e-18 | 82.8 |
| MS.gene49185.t1 | AT3G61060 | 30.496 | 141 | 96 | 1 | 6 | 144 | 27 | 167 | 2.81e-17 | 80.1 |
| MS.gene49185.t1 | AT4G19840 | 29.319 | 191 | 102 | 7 | 89 | 276 | 85 | 245 | 4.40e-15 | 73.6 |
| MS.gene49185.t1 | AT1G12710 | 25.581 | 301 | 192 | 8 | 3 | 275 | 27 | 323 | 1.91e-14 | 72.8 |
Find 80 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTGCATACTGAGTATT+TGG | 0.255011 | 1.1:-72422775 | None:intergenic |
| TTCTGCCTGCGTTCTACATT+TGG | 0.271945 | 1.1:-72422904 | None:intergenic |
| CTTGTATACAAATTGATTGA+TGG | 0.301820 | 1.1:+72422799 | MS.gene49185:CDS |
| ATGGGAGAGTTCTTCAATTC+AGG | 0.321358 | 1.1:+72423027 | MS.gene49185:CDS |
| CATCATCGACGATGCCAAAA+AGG | 0.324659 | 1.1:+72420891 | MS.gene49185:CDS |
| CTAGATCTCTCGCTATTACT+TGG | 0.338529 | 1.1:+72421855 | MS.gene49185:CDS |
| CGCAGACATGGAAGACTTTA+CGG | 0.338884 | 1.1:+72422928 | MS.gene49185:CDS |
| AGCAAATGCTCCTTCCAAAA+AGG | 0.353184 | 1.1:+72420837 | MS.gene49185:CDS |
| TAGCACTAAAATTGTCTGTT+TGG | 0.362941 | 1.1:+72422879 | MS.gene49185:CDS |
| GATGAGTGTTATCGAGATAA+AGG | 0.385187 | 1.1:+72423071 | MS.gene49185:CDS |
| AGACGAAGATTAGCAACTTC+GGG | 0.388577 | 1.1:-72422703 | None:intergenic |
| TGAAATGCAGAGCTTTCAAT+TGG | 0.399907 | 1.1:+72421796 | MS.gene49185:intron |
| GGACCACTATGCCTGATTCC+AGG | 0.401514 | 1.1:+72421903 | MS.gene49185:CDS |
| CCGCCGATTCCGATGCCGTC+TGG | 0.403257 | 1.1:+72420761 | MS.gene49185:CDS |
| TAGATCTCTCGCTATTACTT+GGG | 0.415079 | 1.1:+72421856 | MS.gene49185:CDS |
| GAGAGTCTGCCGGCGTCAAC+AGG | 0.416723 | 1.1:-72420712 | None:intergenic |
| AGGAGTCGTACGAGACAGTA+TGG | 0.422103 | 1.1:-72420692 | None:intergenic |
| AAGGGGAATTTCTTTCTTGA+GGG | 0.424911 | 1.1:+72423105 | MS.gene49185:CDS |
| AAAATGGCCAACCTGGAATC+AGG | 0.426615 | 1.1:-72421914 | None:intergenic |
| TGATGATAGGTCGATCAGAT+AGG | 0.426684 | 1.1:-72420873 | None:intergenic |
| TTATCTCGATAACACTCATC+TGG | 0.440534 | 1.1:-72423068 | None:intergenic |
| ATTCCAGACGGCATCGGAAT+CGG | 0.451722 | 1.1:-72420764 | None:intergenic |
| GTTGCTTAATTGTCTACCTT+AGG | 0.451895 | 1.1:-72423141 | None:intergenic |
| CGCAGGCAGAACCGCAGACA+TGG | 0.453913 | 1.1:+72422916 | MS.gene49185:CDS |
| ATGATGACCGCTATTGGATC+TGG | 0.457353 | 1.1:+72421882 | MS.gene49185:CDS |
| TTGGCATCGTCGATGATGAT+AGG | 0.465612 | 1.1:-72420886 | None:intergenic |
| CAAGGGGAATTTCTTTCTTG+AGG | 0.468108 | 1.1:+72423104 | MS.gene49185:CDS |
| TACAAATTGATTGATGGCTA+TGG | 0.469002 | 1.1:+72422805 | MS.gene49185:CDS |
| GGGGTGATGATGACCGCTAT+TGG | 0.473829 | 1.1:+72421876 | MS.gene49185:CDS |
| ACAAATTGATTGATGGCTAT+GGG | 0.489453 | 1.1:+72422806 | MS.gene49185:CDS |
| CGTCCTTGTGTGAGAAGTGA+TGG | 0.489686 | 1.1:+72422988 | MS.gene49185:CDS |
| CTCAAGAAAGAAATTCCCCT+TGG | 0.498320 | 1.1:-72423103 | None:intergenic |
| ATGATAGAGTCGATGTCAGA+AGG | 0.501608 | 1.1:-72420796 | None:intergenic |
| AAGACGAAGATTAGCAACTT+CGG | 0.509597 | 1.1:-72422704 | None:intergenic |
| CTTCCTGTGGATTTATCTGT+CGG | 0.516064 | 1.1:+72422838 | MS.gene49185:CDS |
| GGCGGCAGAAAGGAAAGTCT+TGG | 0.517109 | 1.1:-72420743 | None:intergenic |
| TGATAGAGTCGATGTCAGAA+GGG | 0.519983 | 1.1:-72420795 | None:intergenic |
| GGGTTTGAAGATTTAGCAGA+AGG | 0.520179 | 1.1:+72420658 | MS.gene49185:CDS |
| GGGTGGTTGGAGATTGAGAT+GGG | 0.540728 | 1.1:+72423009 | MS.gene49185:CDS |
| CATCGGAATCGGCGGCAGAA+AGG | 0.542303 | 1.1:-72420753 | None:intergenic |
| TGGGTGGTTGGAGATTGAGA+TGG | 0.542699 | 1.1:+72423008 | MS.gene49185:CDS |
| GTGTGGTGGCTCGAAATTCG+TGG | 0.547967 | 1.1:+72422727 | MS.gene49185:CDS |
| TGGGTTTGAGAACCTTCCTG+TGG | 0.549562 | 1.1:+72422825 | MS.gene49185:CDS |
| GATGATAGGTCGATCAGATA+GGG | 0.551413 | 1.1:-72420872 | None:intergenic |
| TGTGAGAAGTGATGGGTGGT+TGG | 0.556044 | 1.1:+72422996 | MS.gene49185:CDS |
| GATTTATCTGTCGGTGTCGA+AGG | 0.557631 | 1.1:+72422847 | MS.gene49185:CDS |
| CTAATCTTCGTCTTGTGTGG+TGG | 0.562220 | 1.1:+72422713 | MS.gene49185:CDS |
| TTGCTAATCTTCGTCTTGTG+TGG | 0.565369 | 1.1:+72422710 | MS.gene49185:CDS |
| AGTGTTATCGAGATAAAGGC+TGG | 0.568289 | 1.1:+72423075 | MS.gene49185:CDS |
| GGAAACGACGGAGAGTCTGC+CGG | 0.570360 | 1.1:-72420722 | None:intergenic |
| GAAGGAGCATTTGCTAGAGA+AGG | 0.571483 | 1.1:-72420829 | None:intergenic |
| CAACCTGGAATCAGGCATAG+TGG | 0.580151 | 1.1:-72421906 | None:intergenic |
| GAAGACTTTACGGTCGTGCG+AGG | 0.580931 | 1.1:+72422938 | MS.gene49185:CDS |
| GGGAATAGAAGTGAGGCCTA+AGG | 0.588625 | 1.1:+72423125 | MS.gene49185:CDS |
| AGGTTGCATGACAGAGTGGT+AGG | 0.597534 | 1.1:+72422958 | MS.gene49185:CDS |
| TTATCTGTCGGTGTCGAAGG+TGG | 0.597798 | 1.1:+72422850 | MS.gene49185:CDS |
| CACCCATCACTTCTCACACA+AGG | 0.598274 | 1.1:-72422991 | None:intergenic |
| ATAAAGGCTGGTGAGACCAA+GGG | 0.599634 | 1.1:+72423087 | MS.gene49185:CDS |
| GATAAAGGCTGGTGAGACCA+AGG | 0.599999 | 1.1:+72423086 | MS.gene49185:CDS |
| TTCTTGAGGGAATAGAAGTG+AGG | 0.602948 | 1.1:+72423118 | MS.gene49185:CDS |
| TGTGGTGGCTCGAAATTCGT+GGG | 0.618223 | 1.1:+72422728 | MS.gene49185:CDS |
| AGATCTCTCGCTATTACTTG+GGG | 0.621524 | 1.1:+72421857 | MS.gene49185:CDS |
| CCAGACGGCATCGGAATCGG+CGG | 0.622067 | 1.1:-72420761 | None:intergenic |
| GTCCTTGTGTGAGAAGTGAT+GGG | 0.633145 | 1.1:+72422989 | MS.gene49185:CDS |
| ACACCGACAGATAAATCCAC+AGG | 0.642651 | 1.1:-72422841 | None:intergenic |
| ATACTGAGTATTTGGAGACA+AGG | 0.643026 | 1.1:-72422767 | None:intergenic |
| AAAGTGATTCCAGACGGCAT+CGG | 0.647589 | 1.1:-72420770 | None:intergenic |
| TAAAGGCTGGTGAGACCAAG+GGG | 0.647680 | 1.1:+72423088 | MS.gene49185:CDS |
| TCACTTCTCACACAAGGACG+CGG | 0.648694 | 1.1:-72422985 | None:intergenic |
| TGGATCCAAATGTAGAACGC+AGG | 0.654508 | 1.1:+72422899 | MS.gene49185:CDS |
| AAGGAAAGTCTTGGAAACGA+CGG | 0.661166 | 1.1:-72420734 | None:intergenic |
| CGTAAAGTCTTCCATGTCTG+CGG | 0.661378 | 1.1:-72422927 | None:intergenic |
| AGGGAGAAAGTGATTCCAGA+CGG | 0.665074 | 1.1:-72420776 | None:intergenic |
| TGCGAGGTTGCATGACAGAG+TGG | 0.676261 | 1.1:+72422954 | MS.gene49185:CDS |
| CGACAGATAAATCCACAGGA+AGG | 0.695590 | 1.1:-72422837 | None:intergenic |
| GACGAAGATTAGCAACTTCG+GGG | 0.697062 | 1.1:-72422702 | None:intergenic |
| CGTACGACTCCTGTTGACGC+CGG | 0.716965 | 1.1:+72420703 | MS.gene49185:CDS |
| CTTGTGTGAGAAGTGATGGG+TGG | 0.722396 | 1.1:+72422992 | MS.gene49185:CDS |
| TAGTGGTCCAGATCCAATAG+CGG | 0.737188 | 1.1:-72421889 | None:intergenic |
| AGTCGTACGAGACAGTATGG+AGG | 0.760723 | 1.1:-72420689 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATTATTTAAAAAAGAAA+TGG | - | chr1.1:72421294-72421313 | None:intergenic | 10.0% |
| !! | TACATTTATTAGTATTATTA+GGG | + | chr1.1:72421105-72421124 | MS.gene49185:intron | 10.0% |
| !! | AAAAAGTAAAACAAAAAAAG+AGG | + | chr1.1:72421630-72421649 | MS.gene49185:intron | 15.0% |
| !! | AATAAAAATGAGTAAATTTG+GGG | - | chr1.1:72421945-72421964 | None:intergenic | 15.0% |
| !! | CAATAAAAATGAGTAAATTT+GGG | - | chr1.1:72421946-72421965 | None:intergenic | 15.0% |
| !! | GTACATTTATTAGTATTATT+AGG | + | chr1.1:72421104-72421123 | MS.gene49185:intron | 15.0% |
| !! | TGAAATAATTTAGTTATCAT+TGG | + | chr1.1:72422430-72422449 | MS.gene49185:intron | 15.0% |
| !! | AAAAAAAAGTTATTAGACAG+TGG | - | chr1.1:72422353-72422372 | None:intergenic | 20.0% |
| !! | ATAAAAATGAGTAAATTTGG+GGG | - | chr1.1:72421944-72421963 | None:intergenic | 20.0% |
| !! | ATTGATTGCTGTAAAATATA+TGG | + | chr1.1:72421527-72421546 | MS.gene49185:intron | 20.0% |
| !! | CCAATAAAAATGAGTAAATT+TGG | - | chr1.1:72421947-72421966 | None:intergenic | 20.0% |
| !!! | ACTGATTTTGATTAATTTGT+AGG | - | chr1.1:72421405-72421424 | None:intergenic | 20.0% |
| !!! | CCAAATTTACTCATTTTTAT+TGG | + | chr1.1:72421944-72421963 | MS.gene49185:intron | 20.0% |
| !!! | CTGATTTTGATTAATTTGTA+GGG | - | chr1.1:72421404-72421423 | None:intergenic | 20.0% |
| !!! | TGATTTTGATTAATTTGTAG+GGG | - | chr1.1:72421403-72421422 | None:intergenic | 20.0% |
| ! | ATTGATTGTTCTTTCATGTT+AGG | + | chr1.1:72420981-72421000 | MS.gene49185:intron | 25.0% |
| ! | CTTGTATACAAATTGATTGA+TGG | + | chr1.1:72422799-72422818 | MS.gene49185:CDS | 25.0% |
| ! | GAACAATGTTAAAACAAACA+AGG | - | chr1.1:72421985-72422004 | None:intergenic | 25.0% |
| ! | GAATTGAGAAAAAGTTGAAA+AGG | - | chr1.1:72422643-72422662 | None:intergenic | 25.0% |
| ! | TGAGAAGATATAGAAAATAC+AGG | - | chr1.1:72421507-72421526 | None:intergenic | 25.0% |
| ! | TGCCATAATAAAAGAAATAG+CGG | + | chr1.1:72421676-72421695 | MS.gene49185:intron | 25.0% |
| ! | TTGATTGTTCTTTCATGTTA+GGG | + | chr1.1:72420982-72421001 | MS.gene49185:intron | 25.0% |
| ! | TTTCAATTGGATAGAAAAAG+TGG | + | chr1.1:72421809-72421828 | MS.gene49185:CDS | 25.0% |
| !! | AATATGTGATGATACCTTTT+TGG | - | chr1.1:72420908-72420927 | None:intergenic | 25.0% |
| !! | AATGCTAATAATAAGCCTTT+TGG | + | chr1.1:72421767-72421786 | MS.gene49185:intron | 25.0% |
| !! | ATGCTAATAATAAGCCTTTT+GGG | + | chr1.1:72421768-72421787 | MS.gene49185:intron | 25.0% |
| !! | GTTATTACTCTTTTTGATGT+TGG | + | chr1.1:72422524-72422543 | MS.gene49185:intron | 25.0% |
| !!! | AACCGCTATTTCTTTTATTA+TGG | - | chr1.1:72421681-72421700 | None:intergenic | 25.0% |
| !!! | CCTTTTTTAAATGCTTAGTT+CGG | + | chr1.1:72421744-72421763 | MS.gene49185:intron | 25.0% |
| AATTGTTCATTCCATTTCCT+TGG | + | chr1.1:72422022-72422041 | MS.gene49185:intron | 30.0% | |
| AGATGAAAGTTTCCTTAATG+AGG | - | chr1.1:72422089-72422108 | None:intergenic | 30.0% | |
| ATACGAAATATCCAAGGAAA+TGG | - | chr1.1:72422036-72422055 | None:intergenic | 30.0% | |
| ATGAAAGTTTCCTTAATGAG+GGG | - | chr1.1:72422087-72422106 | None:intergenic | 30.0% | |
| CCGAACTAAGCATTTAAAAA+AGG | - | chr1.1:72421747-72421766 | None:intergenic | 30.0% | |
| GATGAAAGTTTCCTTAATGA+GGG | - | chr1.1:72422088-72422107 | None:intergenic | 30.0% | |
| GTTAAAACAAACAAGGTAGA+AGG | - | chr1.1:72421978-72421997 | None:intergenic | 30.0% | |
| TAGCACTAAAATTGTCTGTT+TGG | + | chr1.1:72422879-72422898 | MS.gene49185:CDS | 30.0% | |
| TCAGCCAATATACATTTACA+GGG | - | chr1.1:72421466-72421485 | None:intergenic | 30.0% | |
| TGCATTTCAATATACCCAAA+AGG | - | chr1.1:72421785-72421804 | None:intergenic | 30.0% | |
| TTCAGCCAATATACATTTAC+AGG | - | chr1.1:72421467-72421486 | None:intergenic | 30.0% | |
| TTGAATATACCCATAGTCTT+TGG | + | chr1.1:72422134-72422153 | MS.gene49185:intron | 30.0% | |
| ! | ACAAATTGATTGATGGCTAT+GGG | + | chr1.1:72422806-72422825 | MS.gene49185:CDS | 30.0% |
| ! | TACAAATTGATTGATGGCTA+TGG | + | chr1.1:72422805-72422824 | MS.gene49185:CDS | 30.0% |
| ! | TCATCATCGTCTGAAATATT+AGG | + | chr1.1:72420928-72420947 | MS.gene49185:intron | 30.0% |
| !! | ACAAGAAGTATTCACTTAGA+AGG | - | chr1.1:72422265-72422284 | None:intergenic | 30.0% |
| !! | AGACAATTTTAGTGCTACTA+TGG | - | chr1.1:72422876-72422895 | None:intergenic | 30.0% |
| !!! | ACTGCATTTTGTTATTCTTG+AGG | - | chr1.1:72421603-72421622 | None:intergenic | 30.0% |
| !!! | GAGCTGTTTCAAAGTTTTTT+TGG | + | chr1.1:72422486-72422505 | MS.gene49185:intron | 30.0% |
| AAAACAAACAAGGTAGAAGG+TGG | - | chr1.1:72421975-72421994 | None:intergenic | 35.0% | |
| AAAATGAGTAAATTTGGGGG+AGG | - | chr1.1:72421941-72421960 | None:intergenic | 35.0% | |
| AACCTCAATAACAGTGATGT+TGG | + | chr1.1:72422326-72422345 | MS.gene49185:intron | 35.0% | |
| AAGACGAAGATTAGCAACTT+CGG | - | chr1.1:72422707-72422726 | None:intergenic | 35.0% | |
| AAGGGGAATTTCTTTCTTGA+GGG | + | chr1.1:72423105-72423124 | MS.gene49185:CDS | 35.0% | |
| AATGAACAATTCACCGAGAA+AGG | - | chr1.1:72422013-72422032 | None:intergenic | 35.0% | |
| ACTCAGATACGAAATATCCA+AGG | - | chr1.1:72422042-72422061 | None:intergenic | 35.0% | |
| AGAAAATACAGGCATAGTGT+CGG | - | chr1.1:72421496-72421515 | None:intergenic | 35.0% | |
| AGAAGAAAAGCCAAAGACTA+TGG | - | chr1.1:72422147-72422166 | None:intergenic | 35.0% | |
| ATACTGAGTATTTGGAGACA+AGG | - | chr1.1:72422770-72422789 | None:intergenic | 35.0% | |
| CATTGTTCTTTCTCCTTTCT+CGG | + | chr1.1:72421997-72422016 | MS.gene49185:intron | 35.0% | |
| CTTTACAAACCAAACCAACA+TGG | - | chr1.1:72421163-72421182 | None:intergenic | 35.0% | |
| GAAGAAAAGCCAAAGACTAT+GGG | - | chr1.1:72422146-72422165 | None:intergenic | 35.0% | |
| GATGAGTGTTATCGAGATAA+AGG | + | chr1.1:72423071-72423090 | MS.gene49185:CDS | 35.0% | |
| TAAATTTGGGGGAGGAAAAA+TGG | - | chr1.1:72421933-72421952 | None:intergenic | 35.0% | |
| TAAGCTGCATACTGAGTATT+TGG | - | chr1.1:72422778-72422797 | None:intergenic | 35.0% | |
| TAGATCTCTCGCTATTACTT+GGG | + | chr1.1:72421856-72421875 | MS.gene49185:CDS | 35.0% | |
| TCAGGTGTATGGTTAACTTT+GGG | - | chr1.1:72422301-72422320 | None:intergenic | 35.0% | |
| TGAAATGCAGAGCTTTCAAT+TGG | + | chr1.1:72421796-72421815 | MS.gene49185:intron | 35.0% | |
| TGATCATATTCCCCTCATTA+AGG | + | chr1.1:72422074-72422093 | MS.gene49185:intron | 35.0% | |
| TGTGCCCTGTAAATGTATAT+TGG | + | chr1.1:72421459-72421478 | MS.gene49185:intron | 35.0% | |
| TGTTATTGAGGTTCAGATTC+AGG | - | chr1.1:72422319-72422338 | None:intergenic | 35.0% | |
| TGTTCATAAGTGTAAGTGCT+AGG | - | chr1.1:72421207-72421226 | None:intergenic | 35.0% | |
| TTATCTCGATAACACTCATC+TGG | - | chr1.1:72423071-72423090 | None:intergenic | 35.0% | |
| TTCAGGTGTATGGTTAACTT+TGG | - | chr1.1:72422302-72422321 | None:intergenic | 35.0% | |
| ! | TCTGGACTTCTTCATTTTCA+AGG | - | chr1.1:72423053-72423072 | None:intergenic | 35.0% |
| ! | TTGAATGTAACCAAGAGTGT+CGG | - | chr1.1:72421266-72421285 | None:intergenic | 35.0% |
| AAACCAACATGGTGGTTCAA+CGG | - | chr1.1:72421152-72421171 | None:intergenic | 40.0% | |
| AACCCACATGTTTGGTAAGT+GGG | - | chr1.1:72421657-72421676 | None:intergenic | 40.0% | |
| AAGGAAAGTCTTGGAAACGA+CGG | - | chr1.1:72420737-72420756 | None:intergenic | 40.0% | |
| ACAATTACCGAAAACGTGTC+TGG | + | chr1.1:72421224-72421243 | MS.gene49185:intron | 40.0% | |
| AGACGAAGATTAGCAACTTC+GGG | - | chr1.1:72422706-72422725 | None:intergenic | 40.0% | |
| AGATCTCTCGCTATTACTTG+GGG | + | chr1.1:72421857-72421876 | MS.gene49185:CDS | 40.0% | |
| AGCAAATGCTCCTTCCAAAA+AGG | + | chr1.1:72420837-72420856 | MS.gene49185:CDS | 40.0% | |
| AGTGTTATCGAGATAAAGGC+TGG | + | chr1.1:72423075-72423094 | MS.gene49185:CDS | 40.0% | |
| ATGATAGAGTCGATGTCAGA+AGG | - | chr1.1:72420799-72420818 | None:intergenic | 40.0% | |
| ATGGGAGAGTTCTTCAATTC+AGG | + | chr1.1:72423027-72423046 | MS.gene49185:CDS | 40.0% | |
| ATTATGGCAACCCACATGTT+TGG | - | chr1.1:72421665-72421684 | None:intergenic | 40.0% | |
| CAAGGGGAATTTCTTTCTTG+AGG | + | chr1.1:72423104-72423123 | MS.gene49185:CDS | 40.0% | |
| CTAGATCTCTCGCTATTACT+TGG | + | chr1.1:72421855-72421874 | MS.gene49185:CDS | 40.0% | |
| CTCAAGAAAGAAATTCCCCT+TGG | - | chr1.1:72423106-72423125 | None:intergenic | 40.0% | |
| CTTCCTGTGGATTTATCTGT+CGG | + | chr1.1:72422838-72422857 | MS.gene49185:CDS | 40.0% | |
| GACACACACAAACACAAACA+TGG | - | chr1.1:72421337-72421356 | None:intergenic | 40.0% | |
| GACCAACATCACTGTTATTG+AGG | - | chr1.1:72422331-72422350 | None:intergenic | 40.0% | |
| GATGATAGGTCGATCAGATA+GGG | - | chr1.1:72420875-72420894 | None:intergenic | 40.0% | |
| GGATAGTTACACATTGACAG+CGG | - | chr1.1:72421316-72421335 | None:intergenic | 40.0% | |
| GGGTTTGAAGATTTAGCAGA+AGG | + | chr1.1:72420658-72420677 | MS.gene49185:CDS | 40.0% | |
| TACAAACCAAACCAACATGG+TGG | - | chr1.1:72421160-72421179 | None:intergenic | 40.0% | |
| TGATAGAGTCGATGTCAGAA+GGG | - | chr1.1:72420798-72420817 | None:intergenic | 40.0% | |
| TGATGATAGGTCGATCAGAT+AGG | - | chr1.1:72420876-72420895 | None:intergenic | 40.0% | |
| TTCTTGAGGGAATAGAAGTG+AGG | + | chr1.1:72423118-72423137 | MS.gene49185:CDS | 40.0% | |
| TTGCTAATCTTCGTCTTGTG+TGG | + | chr1.1:72422710-72422729 | MS.gene49185:CDS | 40.0% | |
| ! | AGATAGAGAGCCTTTTTGGA+AGG | - | chr1.1:72420850-72420869 | None:intergenic | 40.0% |
| AAAATGGCCAACCTGGAATC+AGG | - | chr1.1:72421917-72421936 | None:intergenic | 45.0% | |
| AAAGTGATTCCAGACGGCAT+CGG | - | chr1.1:72420773-72420792 | None:intergenic | 45.0% | |
| ACACCGACAGATAAATCCAC+AGG | - | chr1.1:72422844-72422863 | None:intergenic | 45.0% | |
| AGGGAGAAAGTGATTCCAGA+CGG | - | chr1.1:72420779-72420798 | None:intergenic | 45.0% | |
| ATAAAGGCTGGTGAGACCAA+GGG | + | chr1.1:72423087-72423106 | MS.gene49185:CDS | 45.0% | |
| ATGATGACCGCTATTGGATC+TGG | + | chr1.1:72421882-72421901 | MS.gene49185:CDS | 45.0% | |
| ATGGTGGTTCAACGGAACAA+CGG | - | chr1.1:72421144-72421163 | None:intergenic | 45.0% | |
| CAACCCACATGTTTGGTAAG+TGG | - | chr1.1:72421658-72421677 | None:intergenic | 45.0% | |
| CATCATCGACGATGCCAAAA+AGG | + | chr1.1:72420891-72420910 | MS.gene49185:CDS | 45.0% | |
| CATCTCTGCAACTTCTGTGT+TGG | + | chr1.1:72422672-72422691 | MS.gene49185:intron | 45.0% | |
| CGACAGATAAATCCACAGGA+AGG | - | chr1.1:72422840-72422859 | None:intergenic | 45.0% | |
| CGCAGACATGGAAGACTTTA+CGG | + | chr1.1:72422928-72422947 | MS.gene49185:CDS | 45.0% | |
| CGTAAAGTCTTCCATGTCTG+CGG | - | chr1.1:72422930-72422949 | None:intergenic | 45.0% | |
| CTAATCTTCGTCTTGTGTGG+TGG | + | chr1.1:72422713-72422732 | MS.gene49185:CDS | 45.0% | |
| GACGAAGATTAGCAACTTCG+GGG | - | chr1.1:72422705-72422724 | None:intergenic | 45.0% | |
| GAGGTTCAGATTCAGGTGTA+TGG | - | chr1.1:72422312-72422331 | None:intergenic | 45.0% | |
| GCAAGATGAACGACAATGAG+AGG | + | chr1.1:72422111-72422130 | MS.gene49185:intron | 45.0% | |
| GTCCCACTTACCAAACATGT+GGG | + | chr1.1:72421652-72421671 | MS.gene49185:intron | 45.0% | |
| GTCCTTGTGTGAGAAGTGAT+GGG | + | chr1.1:72422989-72423008 | MS.gene49185:CDS | 45.0% | |
| GTGTTTGTGTGTGTCTGTGT+CGG | + | chr1.1:72421342-72421361 | MS.gene49185:intron | 45.0% | |
| TAGTGGTCCAGATCCAATAG+CGG | - | chr1.1:72421892-72421911 | None:intergenic | 45.0% | |
| TGGATCCAAATGTAGAACGC+AGG | + | chr1.1:72422899-72422918 | MS.gene49185:CDS | 45.0% | |
| TTCTGCCTGCGTTCTACATT+TGG | - | chr1.1:72422907-72422926 | None:intergenic | 45.0% | |
| TTGGCATCGTCGATGATGAT+AGG | - | chr1.1:72420889-72420908 | None:intergenic | 45.0% | |
| ! | GGCAAGATAGAGAGCCTTTT+TGG | - | chr1.1:72420854-72420873 | None:intergenic | 45.0% |
| ! | GTTGAACCACCATGTTGGTT+TGG | + | chr1.1:72421151-72421170 | MS.gene49185:intron | 45.0% |
| !! | GAAGGAGCATTTGCTAGAGA+AGG | - | chr1.1:72420832-72420851 | None:intergenic | 45.0% |
| !! | GATTTATCTGTCGGTGTCGA+AGG | + | chr1.1:72422847-72422866 | MS.gene49185:CDS | 45.0% |
| !! | CATTAAATATATTATTAAAT+AGG | + | chr1.1:72421375-72421394 | MS.gene49185:intron | 5.0% |
| ACTGTTGTCACCGACACTCT+TGG | + | chr1.1:72421253-72421272 | MS.gene49185:intron | 50.0% | |
| AGGAGTCGTACGAGACAGTA+TGG | - | chr1.1:72420695-72420714 | None:intergenic | 50.0% | |
| AGGTTGCATGACAGAGTGGT+AGG | + | chr1.1:72422958-72422977 | MS.gene49185:CDS | 50.0% | |
| AGTCGTACGAGACAGTATGG+AGG | - | chr1.1:72420692-72420711 | None:intergenic | 50.0% | |
| CAACCTGGAATCAGGCATAG+TGG | - | chr1.1:72421909-72421928 | None:intergenic | 50.0% | |
| CACCCATCACTTCTCACACA+AGG | - | chr1.1:72422994-72423013 | None:intergenic | 50.0% | |
| CACTATGCCTGATTCCAGGT+TGG | + | chr1.1:72421907-72421926 | MS.gene49185:intron | 50.0% | |
| CGTCCTTGTGTGAGAAGTGA+TGG | + | chr1.1:72422988-72423007 | MS.gene49185:CDS | 50.0% | |
| CTGCAACTTCTGTGTTGGAC+AGG | + | chr1.1:72422677-72422696 | MS.gene49185:intron | 50.0% | |
| GATAAAGGCTGGTGAGACCA+AGG | + | chr1.1:72423086-72423105 | MS.gene49185:CDS | 50.0% | |
| GGGAATAGAAGTGAGGCCTA+AGG | + | chr1.1:72423125-72423144 | MS.gene49185:CDS | 50.0% | |
| GGGTGGTTGGAGATTGAGAT+GGG | + | chr1.1:72423009-72423028 | MS.gene49185:CDS | 50.0% | |
| GGTCCCACTTACCAAACATG+TGG | + | chr1.1:72421651-72421670 | MS.gene49185:intron | 50.0% | |
| GTTCCGTTGAACCACCATGT+TGG | + | chr1.1:72421146-72421165 | MS.gene49185:intron | 50.0% | |
| TAAAGGCTGGTGAGACCAAG+GGG | + | chr1.1:72423088-72423107 | MS.gene49185:CDS | 50.0% | |
| TCACTTCTCACACAAGGACG+CGG | - | chr1.1:72422988-72423007 | None:intergenic | 50.0% | |
| TGGGTGGTTGGAGATTGAGA+TGG | + | chr1.1:72423008-72423027 | MS.gene49185:CDS | 50.0% | |
| TGGGTTTGAGAACCTTCCTG+TGG | + | chr1.1:72422825-72422844 | MS.gene49185:CDS | 50.0% | |
| TGTGGTGGCTCGAAATTCGT+GGG | + | chr1.1:72422728-72422747 | MS.gene49185:CDS | 50.0% | |
| ! | ATTCCAGACGGCATCGGAAT+CGG | - | chr1.1:72420767-72420786 | None:intergenic | 50.0% |
| ! | CTTGTGTGAGAAGTGATGGG+TGG | + | chr1.1:72422992-72423011 | MS.gene49185:CDS | 50.0% |
| ! | TCGGACACCAGACACGTTTT+CGG | - | chr1.1:72421234-72421253 | None:intergenic | 50.0% |
| !! | AGAGTGTCGGTGACAACAGT+CGG | - | chr1.1:72421253-72421272 | None:intergenic | 50.0% |
| !! | TGTGAGAAGTGATGGGTGGT+TGG | + | chr1.1:72422996-72423015 | MS.gene49185:CDS | 50.0% |
| !! | TTATCTGTCGGTGTCGAAGG+TGG | + | chr1.1:72422850-72422869 | MS.gene49185:CDS | 50.0% |
| GAAGACTTTACGGTCGTGCG+AGG | + | chr1.1:72422938-72422957 | MS.gene49185:CDS | 55.0% | |
| GGACCACTATGCCTGATTCC+AGG | + | chr1.1:72421903-72421922 | MS.gene49185:CDS | 55.0% | |
| GGCGGCAGAAAGGAAAGTCT+TGG | - | chr1.1:72420746-72420765 | None:intergenic | 55.0% | |
| GGGAGGAAAAATGGCCAACC+TGG | - | chr1.1:72421924-72421943 | None:intergenic | 55.0% | |
| GTGTGGTGGCTCGAAATTCG+TGG | + | chr1.1:72422727-72422746 | MS.gene49185:CDS | 55.0% | |
| TGCGAGGTTGCATGACAGAG+TGG | + | chr1.1:72422954-72422973 | MS.gene49185:CDS | 55.0% | |
| ! | GGGGTGATGATGACCGCTAT+TGG | + | chr1.1:72421876-72421895 | MS.gene49185:CDS | 55.0% |
| CATCGGAATCGGCGGCAGAA+AGG | - | chr1.1:72420756-72420775 | None:intergenic | 60.0% | |
| CGTACGACTCCTGTTGACGC+CGG | + | chr1.1:72420703-72420722 | MS.gene49185:CDS | 60.0% | |
| GGAAACGACGGAGAGTCTGC+CGG | - | chr1.1:72420725-72420744 | None:intergenic | 60.0% | |
| CGCAGGCAGAACCGCAGACA+TGG | + | chr1.1:72422916-72422935 | MS.gene49185:CDS | 65.0% | |
| GAGAGTCTGCCGGCGTCAAC+AGG | - | chr1.1:72420715-72420734 | None:intergenic | 65.0% | |
| ! | CCAGACGGCATCGGAATCGG+CGG | - | chr1.1:72420764-72420783 | None:intergenic | 65.0% |
| !! | CCGCCGATTCCGATGCCGTC+TGG | + | chr1.1:72420761-72420780 | MS.gene49185:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 72420652 | 72423158 | 72420652 | ID=MS.gene49185 |
| chr1.1 | mRNA | 72420652 | 72423158 | 72420652 | ID=MS.gene49185.t1;Parent=MS.gene49185 |
| chr1.1 | exon | 72420652 | 72420912 | 72420652 | ID=MS.gene49185.t1.exon1;Parent=MS.gene49185.t1 |
| chr1.1 | CDS | 72420652 | 72420912 | 72420652 | ID=cds.MS.gene49185.t1;Parent=MS.gene49185.t1 |
| chr1.1 | exon | 72421806 | 72421924 | 72421806 | ID=MS.gene49185.t1.exon2;Parent=MS.gene49185.t1 |
| chr1.1 | CDS | 72421806 | 72421924 | 72421806 | ID=cds.MS.gene49185.t1;Parent=MS.gene49185.t1 |
| chr1.1 | exon | 72422699 | 72423158 | 72422699 | ID=MS.gene49185.t1.exon3;Parent=MS.gene49185.t1 |
| chr1.1 | CDS | 72422699 | 72423158 | 72422699 | ID=cds.MS.gene49185.t1;Parent=MS.gene49185.t1 |
| Gene Sequence |
| Protein sequence |