AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07559


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07559.t1 MTR_1g079200 88.060 268 28 1 1 268 1 264 4.45e-173 478
MS.gene07559.t1 MTR_1g079180 85.185 270 33 4 1 268 1 265 4.82e-163 452
MS.gene07559.t1 MTR_1g079370 75.556 270 59 3 1 268 1 265 9.45e-147 411
MS.gene07559.t1 MTR_1g100597 72.662 278 60 4 1 268 1 272 1.44e-137 389
MS.gene07559.t1 MTR_1g079460 71.269 268 75 1 1 268 1 266 1.33e-134 381
MS.gene07559.t1 MTR_1g079380 72.593 270 67 3 1 268 1 265 3.08e-127 363
MS.gene07559.t1 MTR_1g079260 66.787 277 78 4 1 268 1 272 8.89e-126 358
MS.gene07559.t1 MTR_1g079850 66.784 283 77 3 1 268 1 281 4.37e-125 357
MS.gene07559.t1 MTR_1g079250 68.705 278 77 3 1 268 1 278 9.33e-121 347
MS.gene07559.t1 MTR_1g079230 64.029 278 85 4 1 268 1 273 1.06e-118 341
MS.gene07559.t1 MTR_1g100613 70.661 242 53 3 20 248 5 241 5.61e-115 330
MS.gene07559.t1 MTR_3g006850 60.465 301 81 4 4 268 17 315 7.93e-113 327
MS.gene07559.t1 MTR_1g026510 62.191 283 92 4 1 268 1 283 2.23e-112 326
MS.gene07559.t1 MTR_3g452600 60.755 265 97 2 4 268 10 267 4.30e-104 303
MS.gene07559.t1 MTR_1g079350 60.650 277 98 6 1 268 1 275 7.51e-100 293
MS.gene07559.t1 MTR_3g450990 55.477 283 99 4 4 268 10 283 3.78e-93 276
MS.gene07559.t1 MTR_2g079100 57.143 266 97 4 4 265 9 261 1.46e-92 274
MS.gene07559.t1 MTR_1g079340 54.639 291 104 8 1 268 40 325 9.45e-90 269
MS.gene07559.t1 MTR_1g079410 52.920 274 116 6 2 268 6 273 9.28e-89 265
MS.gene07559.t1 MTR_1g078470 72.254 173 43 3 96 268 17 184 1.69e-84 251
MS.gene07559.t1 MTR_7g096300 57.854 261 93 7 1 255 1 250 2.00e-82 262
MS.gene07559.t1 MTR_1g079140 46.000 300 125 6 2 268 11 306 1.71e-75 232
MS.gene07559.t1 MTR_1g079400 44.948 287 115 6 5 268 13 279 3.07e-71 220
MS.gene07559.t1 MTR_7g112550 45.423 284 133 9 2 268 5 283 1.77e-65 206
MS.gene07559.t1 MTR_1g079240 62.983 181 56 4 88 268 10 179 2.91e-64 199
MS.gene07559.t1 MTR_1g083580 39.209 278 156 6 2 268 6 281 1.16e-56 183
MS.gene07559.t1 MTR_1g079350 66.165 133 43 1 1 131 1 133 2.52e-50 165
MS.gene07559.t1 MTR_7g112560 38.433 268 151 8 4 268 1 257 9.61e-49 162
MS.gene07559.t1 MTR_1g076870 58.824 136 36 2 131 248 2 135 5.35e-46 151
MS.gene07559.t1 MTR_4g023570 36.842 266 138 7 4 268 1 237 4.47e-45 152
MS.gene07559.t1 MTR_2g042540 71.028 107 28 2 1 106 1 105 1.01e-41 140
MS.gene07559.t1 MTR_1g079130 43.005 193 78 5 104 268 1 189 5.42e-38 132
MS.gene07559.t1 MTR_7g096310 60.504 119 39 3 60 176 38 150 2.44e-34 122
MS.gene07559.t1 MTR_1g079210 55.200 125 40 2 132 242 7 129 2.43e-33 118
MS.gene07559.t1 MTR_3g058640 57.843 102 41 1 131 232 7 106 5.08e-32 114
MS.gene07559.t1 MTR_1g078460 68.889 90 25 1 1 90 64 150 2.04e-31 114
MS.gene07559.t1 MTR_7g103380 26.545 275 177 7 6 267 21 283 2.29e-29 112
MS.gene07559.t1 MTR_1g079220 70.588 68 18 1 168 235 1 66 5.85e-24 92.4
MS.gene07559.t1 MTR_0113s0040 27.305 282 165 7 2 268 20 276 9.35e-24 97.4
MS.gene07559.t1 MTR_0002s0020 25.448 279 165 7 6 265 24 278 1.91e-19 85.9
MS.gene07559.t1 MTR_1g101390 27.138 269 180 8 2 267 26 281 3.60e-19 85.1
MS.gene07559.t1 MTR_4g102770 32.877 146 97 1 6 151 21 165 7.75e-19 84.3
MS.gene07559.t1 MTR_5g010800 26.894 264 179 7 6 267 19 270 2.43e-18 82.8
MS.gene07559.t1 MTR_4g083970 26.442 208 129 6 66 268 102 290 9.40e-17 78.6
MS.gene07559.t1 MTR_1g079390 72.000 50 12 2 214 263 8 55 2.62e-15 68.9
MS.gene07559.t1 MTR_1g050352 49.462 93 38 5 26 115 46 132 4.87e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07559.t1 AT1G80110 46.183 262 130 3 7 267 4 255 1.65e-71 220
MS.gene07559.t1 AT2G02360 42.322 267 139 6 4 267 14 268 4.67e-70 217
MS.gene07559.t1 AT2G02340 39.927 273 154 6 1 267 33 301 3.15e-59 191
MS.gene07559.t1 AT2G02240 40.449 267 145 5 4 267 61 316 5.80e-59 190
MS.gene07559.t1 AT2G02250 39.925 268 146 6 4 267 47 303 6.00e-56 182
MS.gene07559.t1 AT1G09155 40.278 288 136 9 7 268 3 280 1.81e-54 177
MS.gene07559.t1 AT2G02230 34.516 310 154 7 2 268 30 333 1.89e-53 176
MS.gene07559.t1 AT1G56250 40.141 284 142 9 7 268 4 281 6.98e-51 168
MS.gene07559.t1 AT2G02310 35.821 268 161 5 4 268 45 304 9.51e-50 166
MS.gene07559.t1 AT1G56240 39.502 281 146 9 7 267 4 280 9.89e-49 163
MS.gene07559.t1 AT2G02350 36.296 270 159 7 2 267 22 282 4.20e-48 161
MS.gene07559.t1 AT2G02320 37.037 270 149 9 6 267 42 298 1.14e-47 160
MS.gene07559.t1 AT2G02300 36.029 272 143 8 4 268 34 281 1.38e-41 144
MS.gene07559.t1 AT5G24560 37.245 196 107 4 4 197 3 184 2.08e-36 128
MS.gene07559.t1 AT3G53000 29.964 277 164 9 6 267 23 284 2.99e-32 120
MS.gene07559.t1 AT2G02350 33.929 168 104 5 104 267 1 165 4.97e-22 90.5
MS.gene07559.t1 AT3G61060 23.864 264 190 5 6 268 27 280 4.90e-18 82.0
MS.gene07559.t1 AT3G61060 23.106 264 193 4 6 268 27 281 1.59e-17 80.9
MS.gene07559.t1 AT5G52120 32.051 156 100 2 1 151 18 172 3.17e-17 79.7
MS.gene07559.t1 AT1G63090 27.925 265 175 9 6 267 28 279 6.26e-17 79.0
MS.gene07559.t1 AT1G12710 24.727 275 171 6 6 267 30 281 6.24e-16 76.3
MS.gene07559.t1 AT4G19850 28.571 182 98 7 97 268 59 218 7.13e-14 69.3
MS.gene07559.t1 AT4G19850 29.508 183 95 8 97 268 17 176 8.43e-14 68.2
MS.gene07559.t1 AT1G65390 27.933 179 106 5 94 268 251 410 5.81e-12 65.5
MS.gene07559.t1 AT1G33920 27.273 176 102 6 99 268 9 164 8.06e-12 62.4
MS.gene07559.t1 AT4G19840 28.070 171 100 6 102 268 94 245 2.65e-11 62.4
MS.gene07559.t1 AT1G12710 27.673 159 110 3 6 163 30 184 4.11e-11 62.8

Find 70 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAACTTCTTTATCTTCT+AGG 0.116706 1.2:-62201764 None:intergenic
AGCTGCATACTGAGTGTTTC+GGG 0.254063 1.2:-62201520 None:intergenic
TGTTGCCCACCTTCCACATT+TGG 0.295277 1.2:-62201657 None:intergenic
ATCGGGGAGTTCTTCAATTC+AGG 0.312491 1.2:+62201741 MS.gene07559:CDS
CTGCCGATTCCGACGCCGTC+TGG 0.326987 1.2:+62199334 MS.gene07559:CDS
GATAACACCACGGGATAGTT+TGG 0.336653 1.2:-62201585 None:intergenic
TGATCATTGTCGATGATGAT+AGG 0.340168 1.2:-62199468 None:intergenic
CTAGATCTCTCGCCATTGAT+TGG 0.340546 1.2:+62199683 MS.gene07559:CDS
ACAAGAAGCTCAGCGACTTC+AGG 0.347960 1.2:-62201450 None:intergenic
CTTGTGTTCAAGATGATTGA+TGG 0.366427 1.2:+62201546 MS.gene07559:CDS
TAGATCTCTCGCCATTGATT+GGG 0.368795 1.2:+62199684 MS.gene07559:CDS
AGAAGTTCAAATGAATATAA+AGG 0.377032 1.2:+62201776 MS.gene07559:CDS
GACAGAGTTTGAGGAATTGC+CGG 0.379323 1.2:+62199227 MS.gene07559:CDS
GGATTTCTATGCCTAATTCC+AGG 0.380639 1.2:+62199731 MS.gene07559:CDS
TAGTACTAAAATTGTCTGTT+TGG 0.397688 1.2:+62201632 MS.gene07559:CDS
GGGTGGTTGGAGATTGAAAT+CGG 0.403576 1.2:+62201723 MS.gene07559:CDS
CAAAAGAATGACAGAGTTTG+AGG 0.409289 1.2:+62199218 None:intergenic
AAGCTGCATACTGAGTGTTT+CGG 0.411984 1.2:-62201521 None:intergenic
AAGTGTGGTCTCTTTCTTGA+AGG 0.415452 1.2:+62201819 MS.gene07559:CDS
ATCTAAGCTAACCTGGAATT+AGG 0.417358 1.2:-62199742 None:intergenic
TTCTTGAAGGAATCGAAGTC+AGG 0.419195 1.2:+62201832 MS.gene07559:CDS
TGAAATGCAGAGCTTTCAAT+TGG 0.419927 1.2:+62199624 MS.gene07559:intron
ATGATAGACGCTATTGGAAC+TGG 0.420013 1.2:+62199710 MS.gene07559:CDS
ATTCCAGACGGCGTCGGAAT+CGG 0.451722 1.2:-62199337 None:intergenic
CGGAGTTGTGCGAGAGAGAA+TGG 0.455681 1.2:-62199265 None:intergenic
GGTGGTTGGAGATTGAAATC+GGG 0.460102 1.2:+62201724 MS.gene07559:CDS
GTTACTTAATTGTCTTACTT+AGG 0.474668 1.2:-62201855 None:intergenic
CAAGAAGCTCAGCGACTTCA+GGG 0.475210 1.2:-62201449 None:intergenic
CGGCCTAGTGTGAGAAGCGA+TGG 0.477390 1.2:+62201702 MS.gene07559:CDS
GAGAGTCTGCCGGCGTCAGC+CGG 0.494209 1.2:-62199285 None:intergenic
GGCAGCAGAAAGGAATGTCT+TGG 0.517109 1.2:-62199316 None:intergenic
TCTATCATCACCCCAATCAA+TGG 0.521541 1.2:-62199695 None:intergenic
ATGGCGGAAAGGTAACCTTC+CGG 0.527322 1.2:-62199246 None:intergenic
TTCAAGATGATTGATGGCTA+TGG 0.530465 1.2:+62201552 MS.gene07559:CDS
GGGGTGATGATAGACGCTAT+TGG 0.540557 1.2:+62199704 MS.gene07559:CDS
AGAGTCGATGAAATGAGAAT+CGG 0.543980 1.2:-62199373 None:intergenic
CACCCATCGCTTCTCACACT+AGG 0.546742 1.2:-62201705 None:intergenic
CATTCTCTCTCGCACAACTC+CGG 0.556161 1.2:+62199266 MS.gene07559:CDS
GATCATTGTCGATGATGATA+GGG 0.558501 1.2:-62199467 None:intergenic
CGTCGGAATCGGCAGCAGAA+AGG 0.567395 1.2:-62199326 None:intergenic
GGGCAACATAACAGCGCAGT+AGG 0.570300 1.2:+62201672 MS.gene07559:CDS
AGATCTCTCGCCATTGATTG+GGG 0.570476 1.2:+62199685 MS.gene07559:CDS
GGAAACAACGGAGAGTCTGC+CGG 0.570524 1.2:-62199295 None:intergenic
GTAGGAGCGTTGGCAAGTGA+AGG 0.572663 1.2:-62199411 None:intergenic
GTGTTATCAATTTGTGTCGA+AGG 0.573911 1.2:+62201600 MS.gene07559:CDS
TGTGAGAAGCGATGGGTGGT+TGG 0.576323 1.2:+62201710 MS.gene07559:CDS
TTTCAATTGGACAGAAAGAG+TGG 0.585552 1.2:+62199637 MS.gene07559:CDS
CGCACAACTCCGGCTGACGC+CGG 0.587266 1.2:+62199276 MS.gene07559:CDS
CATCATCGACAATGATCAGA+AGG 0.590425 1.2:+62199473 MS.gene07559:CDS
ACACAAATTGATAACACCAC+GGG 0.605212 1.2:-62201594 None:intergenic
TTATCAATTTGTGTCGAAGG+TGG 0.608233 1.2:+62201603 MS.gene07559:CDS
GTGGTTGGAGATTGAAATCG+GGG 0.611248 1.2:+62201725 MS.gene07559:CDS
TGCGAGAGAGAATGGCGGAA+AGG 0.620409 1.2:-62199257 None:intergenic
GATGATTATAATTCGAAGTG+TGG 0.621156 1.2:+62201804 MS.gene07559:CDS
TGTCTGTTTGGATCCAAATG+TGG 0.625217 1.2:+62201644 MS.gene07559:CDS
GAGTTTGAGGAATTGCCGGA+AGG 0.635608 1.2:+62199231 MS.gene07559:CDS
GGCCTAGTGTGAGAAGCGAT+GGG 0.643186 1.2:+62201703 MS.gene07559:CDS
TGGATCCAAATGTGGAAGGT+GGG 0.645556 1.2:+62201652 MS.gene07559:CDS
CGATGAAATGAGAATCGGAA+GGG 0.647280 1.2:-62199368 None:intergenic
AAAGTGATTCCAGACGGCGT+CGG 0.652221 1.2:-62199343 None:intergenic
ACAGCGCAGTAGGATTGCAA+CGG 0.659500 1.2:+62201682 MS.gene07559:CDS
GACACAAATTGATAACACCA+CGG 0.662112 1.2:-62201595 None:intergenic
TTGGATCCAAATGTGGAAGG+TGG 0.663222 1.2:+62201651 MS.gene07559:CDS
AAGGAATGTCTTGGAAACAA+CGG 0.668714 1.2:-62199307 None:intergenic
TCGATGAAATGAGAATCGGA+AGG 0.671701 1.2:-62199369 None:intergenic
TGTTTGGATCCAAATGTGGA+AGG 0.673961 1.2:+62201648 MS.gene07559:CDS
AGGGAGAAAGTGATTCCAGA+CGG 0.678403 1.2:-62199349 None:intergenic
TCAGAATCCAAACTATCCCG+TGG 0.688070 1.2:+62201578 MS.gene07559:CDS
CTAGTGTGAGAAGCGATGGG+TGG 0.709944 1.2:+62201706 MS.gene07559:CDS
AGTTGTGCGAGAGAGAATGG+CGG 0.737972 1.2:-62199262 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTAAATAAAATTGAAAT+TGG - chr1.2:62199928-62199947 None:intergenic 10.0%
!!! TTGATATTTTAAGATTTTTT+TGG + chr1.2:62199572-62199591 MS.gene07559:intron 10.0%
!! AGACATAATAATAATAGTTA+AGG - chr1.2:62201223-62201242 None:intergenic 15.0%
!! TGATACATTGAAAAATAAAT+AGG - chr1.2:62200384-62200403 None:intergenic 15.0%
!!! ACTAAATTTTGTATTCATAA+AGG - chr1.2:62199833-62199852 None:intergenic 15.0%
!!! CTATATTTGAAACTTAATTA+TGG - chr1.2:62200740-62200759 None:intergenic 15.0%
!!! TACATCTCTATTTTTTATTT+GGG - chr1.2:62201365-62201384 None:intergenic 15.0%
!!! TTACATCTCTATTTTTTATT+TGG - chr1.2:62201366-62201385 None:intergenic 15.0%
!! AGAAGTTCAAATGAATATAA+AGG + chr1.2:62201776-62201795 MS.gene07559:CDS 20.0%
!! AGCATATATAACTTATTAAC+TGG + chr1.2:62201254-62201273 MS.gene07559:intron 20.0%
!! AGTAAATTTCAAAGAAAACA+TGG - chr1.2:62201102-62201121 None:intergenic 20.0%
!! AGTTGCAAATATTAGAATAT+AGG - chr1.2:62201417-62201436 None:intergenic 20.0%
!! ATGAATACAAAATTTAGTTG+AGG + chr1.2:62199835-62199854 MS.gene07559:intron 20.0%
!! ATGAGAAATTCAATAATCAA+AGG - chr1.2:62199995-62200014 None:intergenic 20.0%
!! CATTGAAAAATAAATAGGAT+TGG - chr1.2:62200379-62200398 None:intergenic 20.0%
!! GCATATATAACTTATTAACT+GGG + chr1.2:62201255-62201274 MS.gene07559:intron 20.0%
!!! AAATTTTGTATTCATAAAGG+CGG - chr1.2:62199830-62199849 None:intergenic 20.0%
!!! ATTTGAAACTTAATTATGGA+AGG - chr1.2:62200736-62200755 None:intergenic 20.0%
!!! TTTGAAACTTAATTATGGAA+GGG - chr1.2:62200735-62200754 None:intergenic 20.0%
!!! TTTGAAATTTACTTTTGACT+TGG + chr1.2:62201109-62201128 MS.gene07559:intron 20.0%
! ATATAACTTATTAACTGGGT+AGG + chr1.2:62201259-62201278 MS.gene07559:intron 25.0%
! ATTCTAATATTTGCAACTGT+TGG + chr1.2:62201419-62201438 MS.gene07559:intron 25.0%
! ATTGATACTAAAATCGAGAA+AGG + chr1.2:62199875-62199894 MS.gene07559:intron 25.0%
! CAATTAGGATAAAAAACCTA+TGG - chr1.2:62200347-62200366 None:intergenic 25.0%
! TAATAGACTATATCAAGATG+AGG - chr1.2:62200924-62200943 None:intergenic 25.0%
! TAGTACTAAAATTGTCTGTT+TGG + chr1.2:62201632-62201651 MS.gene07559:CDS 25.0%
! TTTCAAAGAAAACATGGTAT+TGG - chr1.2:62201096-62201115 None:intergenic 25.0%
! TTTGAACTTCTTTATCTTCT+AGG - chr1.2:62201767-62201786 None:intergenic 25.0%
!!! AGACAATTTTAGTACTATCA+TGG - chr1.2:62201629-62201648 None:intergenic 25.0%
!!! GAGCAGAGATTTTAAAAATT+TGG - chr1.2:62200412-62200431 None:intergenic 25.0%
!!! TTTTTTGGCTTCATATTAGT+GGG + chr1.2:62201475-62201494 MS.gene07559:CDS 25.0%
AACTGCATCATTAAAGATGA+AGG - chr1.2:62200312-62200331 None:intergenic 30.0%
AATATTTGCAACTGTTGGAT+AGG + chr1.2:62201424-62201443 MS.gene07559:intron 30.0%
AATCTCAACACAACAATCAT+TGG - chr1.2:62199905-62199924 None:intergenic 30.0%
ACTTAATATCTAAGCTAACC+TGG - chr1.2:62199752-62199771 None:intergenic 30.0%
AGTTATTGCTTCATTTCCAT+AGG + chr1.2:62200328-62200347 MS.gene07559:intron 30.0%
ATGATGTCAACAAAATGAGT+CGG + chr1.2:62200877-62200896 MS.gene07559:intron 30.0%
CAAAATTTAGTTGAGGCAAA+TGG + chr1.2:62199842-62199861 MS.gene07559:intron 30.0%
CAACTTGAATGTAATAAGCA+TGG - chr1.2:62200687-62200706 None:intergenic 30.0%
GATGATTATAATTCGAAGTG+TGG + chr1.2:62201804-62201823 MS.gene07559:CDS 30.0%
TCATTAAAGATGAAGGATCT+TGG - chr1.2:62200305-62200324 None:intergenic 30.0%
! AAATTTGGGTTTGAAATCGA+GGG - chr1.2:62200037-62200056 None:intergenic 30.0%
! ACTGAACGTGCTTTAAATTT+GGG - chr1.2:62200051-62200070 None:intergenic 30.0%
! CAAGTTGAACACTATTATAC+TGG + chr1.2:62200830-62200849 MS.gene07559:intron 30.0%
! TAAATTTGGGTTTGAAATCG+AGG - chr1.2:62200038-62200057 None:intergenic 30.0%
! TTACAATTCTCCTCATTTTC+TGG + chr1.2:62199967-62199986 MS.gene07559:intron 30.0%
!!! GTTTTTTGGCTTCATATTAG+TGG + chr1.2:62201474-62201493 MS.gene07559:CDS 30.0%
AACAATGTGTAGCAATACCA+AGG - chr1.2:62200481-62200500 None:intergenic 35.0%
AAGGAATGTCTTGGAAACAA+CGG - chr1.2:62199310-62199329 None:intergenic 35.0%
ACAAATATTTGATGTCCCTG+TGG + chr1.2:62200086-62200105 MS.gene07559:intron 35.0%
AGAGTCGATGAAATGAGAAT+CGG - chr1.2:62199376-62199395 None:intergenic 35.0%
AGATAGATGAGTGAATAGCA+TGG - chr1.2:62200257-62200276 None:intergenic 35.0%
ATATCAAGATGAGGACTACA+AGG - chr1.2:62200915-62200934 None:intergenic 35.0%
ATCAAAGGAACCAGAAAATG+AGG - chr1.2:62199980-62199999 None:intergenic 35.0%
ATCTAAGCTAACCTGGAATT+AGG - chr1.2:62199745-62199764 None:intergenic 35.0%
ATGAAGACTGATGACATTCA+TGG + chr1.2:62200649-62200668 MS.gene07559:intron 35.0%
ATGGAAGGGATGTCAAAAAA+TGG - chr1.2:62200721-62200740 None:intergenic 35.0%
CTTCCAGTGTTGTCAAATAT+TGG + chr1.2:62200133-62200152 MS.gene07559:intron 35.0%
CTTGTGTTCAAGATGATTGA+TGG + chr1.2:62201546-62201565 MS.gene07559:CDS 35.0%
GATCATTGTCGATGATGATA+GGG - chr1.2:62199470-62199489 None:intergenic 35.0%
GCAATACCAAGGCTTAAAAA+AGG - chr1.2:62200470-62200489 None:intergenic 35.0%
GTGTTATCAATTTGTGTCGA+AGG + chr1.2:62201600-62201619 MS.gene07559:CDS 35.0%
TAGCCAATATTTGACAACAC+TGG - chr1.2:62200139-62200158 None:intergenic 35.0%
TGAAATGCAGAGCTTTCAAT+TGG + chr1.2:62199624-62199643 MS.gene07559:intron 35.0%
TGATCATTGTCGATGATGAT+AGG - chr1.2:62199471-62199490 None:intergenic 35.0%
TGGAAGGGATGTCAAAAAAT+GGG - chr1.2:62200720-62200739 None:intergenic 35.0%
TTATCAATTTGTGTCGAAGG+TGG + chr1.2:62201603-62201622 MS.gene07559:CDS 35.0%
TTCAGATTGCTAATAAGCCT+TGG + chr1.2:62199595-62199614 MS.gene07559:intron 35.0%
TTTCAATTGGACAGAAAGAG+TGG + chr1.2:62199637-62199656 MS.gene07559:CDS 35.0%
! ACACAAATTGATAACACCAC+GGG - chr1.2:62201597-62201616 None:intergenic 35.0%
! AGAAACACATTTTAAGCCAC+AGG - chr1.2:62200105-62200124 None:intergenic 35.0%
! GAAACACATTTTAAGCCACA+GGG - chr1.2:62200104-62200123 None:intergenic 35.0%
! GACACAAATTGATAACACCA+CGG - chr1.2:62201598-62201617 None:intergenic 35.0%
! GACTGAACGTGCTTTAAATT+TGG - chr1.2:62200052-62200071 None:intergenic 35.0%
! GTGTTGTCAAATATTGGCTA+TGG + chr1.2:62200139-62200158 MS.gene07559:intron 35.0%
! TTCAAGATGATTGATGGCTA+TGG + chr1.2:62201552-62201571 MS.gene07559:CDS 35.0%
! TTGTCAAATATTGGCTATGG+TGG + chr1.2:62200142-62200161 MS.gene07559:intron 35.0%
!!! AGATACAGAGCTTTTTTGGT+AGG - chr1.2:62199432-62199451 None:intergenic 35.0%
!!! AGCAAGATACAGAGCTTTTT+TGG - chr1.2:62199436-62199455 None:intergenic 35.0%
!!! ATACTTTTTTCTTTGTGCCG+TGG + chr1.2:62200176-62200195 MS.gene07559:intron 35.0%
!!! CTGAGCTTCTTGTTGTTTTT+TGG + chr1.2:62201460-62201479 MS.gene07559:CDS 35.0%
AAATTGTTTGGGCTAAGGGT+TGG + chr1.2:62201284-62201303 MS.gene07559:intron 40.0%
AACAAATGAACGTCTGAGTG+AGG - chr1.2:62201158-62201177 None:intergenic 40.0%
AAGCTGCATACTGAGTGTTT+CGG - chr1.2:62201524-62201543 None:intergenic 40.0%
AAGTGTGGTCTCTTTCTTGA+AGG + chr1.2:62201819-62201838 MS.gene07559:CDS 40.0%
ACTGGGTAGGTCAAATTGTT+TGG + chr1.2:62201272-62201291 MS.gene07559:intron 40.0%
AGGTCAAATTGTTTGGGCTA+AGG + chr1.2:62201279-62201298 MS.gene07559:intron 40.0%
AGTTGAGGCAAATGGATAAG+TGG + chr1.2:62199850-62199869 MS.gene07559:intron 40.0%
ATGATAGACGCTATTGGAAC+TGG + chr1.2:62199710-62199729 MS.gene07559:CDS 40.0%
CATCATCGACAATGATCAGA+AGG + chr1.2:62199473-62199492 MS.gene07559:CDS 40.0%
CGATGAAATGAGAATCGGAA+GGG - chr1.2:62199371-62199390 None:intergenic 40.0%
CTGGGTAGGTCAAATTGTTT+GGG + chr1.2:62201273-62201292 MS.gene07559:intron 40.0%
GGAAGGGATGTCAAAAAATG+GGG - chr1.2:62200719-62200738 None:intergenic 40.0%
GGATTTCTATGCCTAATTCC+AGG + chr1.2:62199731-62199750 MS.gene07559:CDS 40.0%
GGTCAAATTGTTTGGGCTAA+GGG + chr1.2:62201280-62201299 MS.gene07559:intron 40.0%
TAAAGCACGTTCAGTCAAAC+CGG + chr1.2:62200056-62200075 MS.gene07559:intron 40.0%
TCAAATATTTGTCCGAGCAC+CGG - chr1.2:62200078-62200097 None:intergenic 40.0%
TCGATGAAATGAGAATCGGA+AGG - chr1.2:62199372-62199391 None:intergenic 40.0%
TCTATCATCACCCCAATCAA+TGG - chr1.2:62199698-62199717 None:intergenic 40.0%
TCTGCATTTCAACACATCCA+AGG - chr1.2:62199615-62199634 None:intergenic 40.0%
TCTTGTAATCTCCGACAACA+GGG + chr1.2:62199502-62199521 MS.gene07559:intron 40.0%
TGTAATAAGCATGGCAGACA+AGG - chr1.2:62200678-62200697 None:intergenic 40.0%
TGTCTGTTTGGATCCAAATG+TGG + chr1.2:62201644-62201663 MS.gene07559:CDS 40.0%
TGTTTGGATCCAAATGTGGA+AGG + chr1.2:62201648-62201667 MS.gene07559:CDS 40.0%
TTCTTGAAGGAATCGAAGTC+AGG + chr1.2:62201832-62201851 MS.gene07559:CDS 40.0%
TTCTTGTAATCTCCGACAAC+AGG + chr1.2:62199501-62199520 MS.gene07559:intron 40.0%
TTGAAATGCGCACATGTCTA+CGG + chr1.2:62200957-62200976 MS.gene07559:intron 40.0%
! ACTCAGACGTTCATTTGTTG+AGG + chr1.2:62201159-62201178 MS.gene07559:intron 40.0%
! TAGATCTCTCGCCATTGATT+GGG + chr1.2:62199684-62199703 MS.gene07559:CDS 40.0%
!! ATGAAGGATCTTGGTGTTCA+AGG - chr1.2:62200296-62200315 None:intergenic 40.0%
AAGTGATGTGCTATCGATGG+TGG - chr1.2:62200210-62200229 None:intergenic 45.0%
AATCTCCGACAACAGGGAAA+GGG + chr1.2:62199508-62199527 MS.gene07559:intron 45.0%
AGCTGCATACTGAGTGTTTC+GGG - chr1.2:62201523-62201542 None:intergenic 45.0%
AGGGAGAAAGTGATTCCAGA+CGG - chr1.2:62199352-62199371 None:intergenic 45.0%
AGGTCTGACAGTAGATTGCT+TGG - chr1.2:62201138-62201157 None:intergenic 45.0%
ATCGGGGAGTTCTTCAATTC+AGG + chr1.2:62201741-62201760 MS.gene07559:CDS 45.0%
CAGAAGTGATGTGCTATCGA+TGG - chr1.2:62200213-62200232 None:intergenic 45.0%
CTAGATCTCTCGCCATTGAT+TGG + chr1.2:62199683-62199702 MS.gene07559:CDS 45.0%
GACAGAGTTTGAGGAATTGC+CGG + chr1.2:62199227-62199246 MS.gene07559:CDS 45.0%
GATAACACCACGGGATAGTT+TGG - chr1.2:62201588-62201607 None:intergenic 45.0%
GGGTGGTTGGAGATTGAAAT+CGG + chr1.2:62201723-62201742 MS.gene07559:CDS 45.0%
GGTGGTTGGAGATTGAAATC+GGG + chr1.2:62201724-62201743 MS.gene07559:CDS 45.0%
GTGGTTGGAGATTGAAATCG+GGG + chr1.2:62201725-62201744 MS.gene07559:CDS 45.0%
TAATCTCCGACAACAGGGAA+AGG + chr1.2:62199507-62199526 MS.gene07559:intron 45.0%
TCAGAATCCAAACTATCCCG+TGG + chr1.2:62201578-62201597 MS.gene07559:CDS 45.0%
TCATCAACAAGGACAGCAGA+TGG + chr1.2:62200611-62200630 MS.gene07559:intron 45.0%
TGCTGAGTCCTTCATCAACA+AGG + chr1.2:62200600-62200619 MS.gene07559:intron 45.0%
TGGATCCAAATGTGGAAGGT+GGG + chr1.2:62201652-62201671 MS.gene07559:CDS 45.0%
TTGGATCCAAATGTGGAAGG+TGG + chr1.2:62201651-62201670 MS.gene07559:CDS 45.0%
TTTCTCCCTTTCCCTGTTGT+CGG - chr1.2:62199516-62199535 None:intergenic 45.0%
! AGATCTCTCGCCATTGATTG+GGG + chr1.2:62199685-62199704 MS.gene07559:CDS 45.0%
! GATTGGTTGTCGCGACAATT+AGG - chr1.2:62200362-62200381 None:intergenic 45.0%
! TCTGCTGTCCTTGTTGATGA+AGG - chr1.2:62200611-62200630 None:intergenic 45.0%
!! AAATGAGTCGGCTTGTGTCT+AGG + chr1.2:62200889-62200908 MS.gene07559:intron 45.0%
!! CTTGGTGTTCAAGGTGAACT+TGG - chr1.2:62200287-62200306 None:intergenic 45.0%
!!! AGCTTTTTTGGTAGGAGCGT+TGG - chr1.2:62199424-62199443 None:intergenic 45.0%
!!! GCTGCTCCTTTTTTAAGCCT+TGG + chr1.2:62200461-62200480 MS.gene07559:intron 45.0%
AAAGTGATTCCAGACGGCGT+CGG - chr1.2:62199346-62199365 None:intergenic 50.0%
ACAAGAAGCTCAGCGACTTC+AGG - chr1.2:62201453-62201472 None:intergenic 50.0%
ACAGCGCAGTAGGATTGCAA+CGG + chr1.2:62201682-62201701 MS.gene07559:CDS 50.0%
AGGACAGCAGATGGTCTTTG+AGG + chr1.2:62200620-62200639 MS.gene07559:intron 50.0%
AGTTGTGCGAGAGAGAATGG+CGG - chr1.2:62199265-62199284 None:intergenic 50.0%
CAAGAAGCTCAGCGACTTCA+GGG - chr1.2:62201452-62201471 None:intergenic 50.0%
CATTCTCTCTCGCACAACTC+CGG + chr1.2:62199266-62199285 MS.gene07559:CDS 50.0%
GACCAATGCAGTAGCTGACT+AGG + chr1.2:62201022-62201041 MS.gene07559:intron 50.0%
GAGTTTGAGGAATTGCCGGA+AGG + chr1.2:62199231-62199250 MS.gene07559:CDS 50.0%
GGCAGCAGAAAGGAATGTCT+TGG - chr1.2:62199319-62199338 None:intergenic 50.0%
GGGGTGATGATAGACGCTAT+TGG + chr1.2:62199704-62199723 MS.gene07559:CDS 50.0%
GGTAAGATGCAGTGCATCTG+CGG - chr1.2:62201075-62201094 None:intergenic 50.0%
GTAAGATGCAGTGCATCTGC+GGG - chr1.2:62201074-62201093 None:intergenic 50.0%
GTATCTGTCCTTAGCAGCTG+TGG + chr1.2:62201186-62201205 MS.gene07559:intron 50.0%
TGTTGCCCACCTTCCACATT+TGG - chr1.2:62201660-62201679 None:intergenic 50.0%
TTCACTAGCCACAGCTGCTA+AGG - chr1.2:62201197-62201216 None:intergenic 50.0%
! AAATCGAGGGCATAGCTACG+TGG - chr1.2:62200024-62200043 None:intergenic 50.0%
! ATGGCGGAAAGGTAACCTTC+CGG - chr1.2:62199249-62199268 None:intergenic 50.0%
!! GATGTGCTATCGATGGTGGA+TGG - chr1.2:62200206-62200225 None:intergenic 50.0%
!! GCATTGGTCTTCAGCTGCAA+GGG - chr1.2:62201011-62201030 None:intergenic 50.0%
!! TGCATTGGTCTTCAGCTGCA+AGG - chr1.2:62201012-62201031 None:intergenic 50.0%
CACCCATCGCTTCTCACACT+AGG - chr1.2:62201708-62201727 None:intergenic 55.0%
CGGAGTTGTGCGAGAGAGAA+TGG - chr1.2:62199268-62199287 None:intergenic 55.0%
CGTTCAGTCAAACCGGTGCT+CGG + chr1.2:62200063-62200082 MS.gene07559:intron 55.0%
CTAGTGTGAGAAGCGATGGG+TGG + chr1.2:62201706-62201725 MS.gene07559:CDS 55.0%
GGAAACAACGGAGAGTCTGC+CGG - chr1.2:62199298-62199317 None:intergenic 55.0%
GGCCTAGTCAGCTACTGCAT+TGG - chr1.2:62201027-62201046 None:intergenic 55.0%
GGCCTAGTGTGAGAAGCGAT+GGG + chr1.2:62201703-62201722 MS.gene07559:CDS 55.0%
GGGCAACATAACAGCGCAGT+AGG + chr1.2:62201672-62201691 MS.gene07559:CDS 55.0%
GGTCTTCAGCTGCAAGGGTA+AGG - chr1.2:62201006-62201025 None:intergenic 55.0%
GTGTCCAGTGTCTACGCAAG+TGG - chr1.2:62201048-62201067 None:intergenic 55.0%
TAGGCCACTTGCGTAGACAC+TGG + chr1.2:62201041-62201060 MS.gene07559:intron 55.0%
TGTGAGAAGCGATGGGTGGT+TGG + chr1.2:62201710-62201729 MS.gene07559:CDS 55.0%
! ATTCCAGACGGCGTCGGAAT+CGG - chr1.2:62199340-62199359 None:intergenic 55.0%
! TGCGAGAGAGAATGGCGGAA+AGG - chr1.2:62199260-62199279 None:intergenic 55.0%
!! GTAGGAGCGTTGGCAAGTGA+AGG - chr1.2:62199414-62199433 None:intergenic 55.0%
CGGCCTAGTGTGAGAAGCGA+TGG + chr1.2:62201702-62201721 MS.gene07559:CDS 60.0%
CGTCGGAATCGGCAGCAGAA+AGG - chr1.2:62199329-62199348 None:intergenic 60.0%
!! CGATGGTGGATGGCAGACCA+CGG - chr1.2:62200196-62200215 None:intergenic 60.0%
CGCACAACTCCGGCTGACGC+CGG + chr1.2:62199276-62199295 MS.gene07559:CDS 70.0%
GAGAGTCTGCCGGCGTCAGC+CGG - chr1.2:62199288-62199307 None:intergenic 70.0%
!! CTGCCGATTCCGACGCCGTC+TGG + chr1.2:62199334-62199353 MS.gene07559:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 62199225 62201863 62199225 ID=MS.gene07559
chr1.2 mRNA 62199225 62201863 62199225 ID=MS.gene07559.t1;Parent=MS.gene07559
chr1.2 exon 62199225 62199494 62199225 ID=MS.gene07559.t1.exon1;Parent=MS.gene07559.t1
chr1.2 CDS 62199225 62199494 62199225 ID=cds.MS.gene07559.t1;Parent=MS.gene07559.t1
chr1.2 exon 62199634 62199752 62199634 ID=MS.gene07559.t1.exon2;Parent=MS.gene07559.t1
chr1.2 CDS 62199634 62199752 62199634 ID=cds.MS.gene07559.t1;Parent=MS.gene07559.t1
chr1.2 exon 62201446 62201863 62201446 ID=MS.gene07559.t1.exon3;Parent=MS.gene07559.t1
chr1.2 CDS 62201446 62201863 62201446 ID=cds.MS.gene07559.t1;Parent=MS.gene07559.t1
Gene Sequence

>MS.gene07559

ATGACAGAGTTTGAGGAATTGCCGGAAGGTTACCTTTCCGCCATTCTCTCTCGCACAACTCCGGCTGACGCCGGCAGACTCTCCGTTGTTTCCAAGACATTCCTTTCTGCTGCCGATTCCGACGCCGTCTGGAATCACTTTCTCCCTTCCGATTCTCATTTCATCGACTCTATCATCTCACACTCTCCTTCACTTGCCAACGCTCCTACCAAAAAAGCTCTGTATCTTGCTCTCTCTGATCGCCCTATCATCATCGACAATGATCAGAAGGTATTCTTCTTGTAATCTCCGACAACAGGGAAAGGGAGAAAATGTGAAATTTAGATTTATTTTCGAGAAAAAAGCTATTGATATTTTAAGATTTTTTTGGTTCAGATTGCTAATAAGCCTTGGATGTGTTGAAATGCAGAGCTTTCAATTGGACAGAAAGAGTGGAAAAAAGTGTTACATGCTTGCTGCTAGATCTCTCGCCATTGATTGGGGTGATGATAGACGCTATTGGAACTGGATTTCTATGCCTAATTCCAGGTTAGCTTAGATATTAAGTTTTCTATTTTTTCTCATGTGTTAATAATATTTTCATTAACAGTTATATTACTACGCCGCCTTTATGAATACAAAATTTAGTTGAGGCAAATGGATAAGTGGCTATTGATACTAAAATCGAGAAAGGATTTCCAATGATTGTTGTGTTGAGATTCCAATTTCAATTTTATTTAAGTTGTGCTTCTCTGTTTCTCTCTTACAATTCTCCTCATTTTCTGGTTCCTTTGATTATTGAATTTCTCATGTTACTCCACGTAGCTATGCCCTCGATTTCAAACCCAAATTTAAAGCACGTTCAGTCAAACCGGTGCTCGGACAAATATTTGATGTCCCTGTGGCTTAAAATGTGTTTCTCAATATCACTTCCAGTGTTGTCAAATATTGGCTATGGTGGCTAAAAAGTGTATACTTTTTTCTTTGTGCCGTGGTCTGCCATCCACCATCGATAGCACATCACTTCTGCTAAGTATCAGCAGCACGTATCCATGCTATTCACTCATCTATCTCTTTCATCCAAGTTCACCTTGAACACCAAGATCCTTCATCTTTAATGATGCAGTTATTGCTTCATTTCCATAGGTTTTTTATCCTAATTGTCGCGACAACCAATCCTATTTATTTTTCAATGTATCATTTTACCAAATTTTTAAAATCTCTGCTCAATTTGTTTGTTAGTTTACAACAAAAGACGCTGCTCCTTTTTTAAGCCTTGGTATTGCTACACATTGTTCTTGATGAATTGAATTTTCATGAATTGAATATTCAAGTTCAAATTGATTTATATAATAAATTCATTGCTATAAACTTATACTTATTTTGATATTTTATATGCTGAGTCCTTCATCAACAAGGACAGCAGATGGTCTTTGAGGAAGATTATGAAGACTGATGACATTCATGGTTACCTTGTCTGCCATGCTTATTACATTCAAGTTGTATTGAATTCCCCATTTTTTGACATCCCTTCCATAATTAAGTTTCAAATATAGTGTGACAGTGTACTCATTATTCTCGAGTTGACTATTTGTCTTCAAAATGTTTTTCACTTCTTAATGTATACAAGTTGAACACTATTATACTGGACAATTTCTAGATTTGCATCTGTTATGATGTCAACAAAATGAGTCGGCTTGTGTCTAGGCCTTGTAGTCCTCATCTTGATATAGTCTATTATCTGTTCAGATAATTGAAATGCGCACATGTCTACGGTGTTCTATTTTCTGCAACTTCTTCCTTACCCTTGCAGCTGAAGACCAATGCAGTAGCTGACTAGGCCACTTGCGTAGACACTGGACACACACCCGCAGATGCACTGCATCTTACCAATACCATGTTTTCTTTGAAATTTACTTTTGACTTGGAATCCAAGCAATCTACTGTCAGACCTCACTCAGACGTTCATTTGTTGAGGCTGAGTATCTGTCCTTAGCAGCTGTGGCTAGTGAATTACCTTAACTATTATTATTATGTCTTTTCGTATAACAGCATATATAACTTATTAACTGGGTAGGTCAAATTGTTTGGGCTAAGGGTTGGAAGAGTTAAAGAAGAAAAATGCTAATATACTGACTAATTACTAACATTTGCTTGTCCCAAATAAAAAATAGAGATGTAATGAATCACTTTCAGCTTTTCTCTTAGTTCCTATATTCTAATATTTGCAACTGTTGGATAGGTTCCCTGAAGTCGCTGAGCTTCTTGTTGTTTTTTGGCTTCATATTAGTGGGATGATAAACATGCTTGCATTGTCCCGAAACACTCAGTATGCAGCTTATCTTGTGTTCAAGATGATTGATGGCTATGGATTTCAGAATCCAAACTATCCCGTGGTGTTATCAATTTGTGTCGAAGGTGGCCATGATAGTACTAAAATTGTCTGTTTGGATCCAAATGTGGAAGGTGGGCAACATAACAGCGCAGTAGGATTGCAACGGCCTAGTGTGAGAAGCGATGGGTGGTTGGAGATTGAAATCGGGGAGTTCTTCAATTCAGGCCTAGAAGATAAAGAAGTTCAAATGAATATAAAGGAGATAGATGATTATAATTCGAAGTGTGGTCTCTTTCTTGAAGGAATCGAAGTCAGGCCTAAGTAA

Protein sequence

>MS.gene07559.t1

MTEFEELPEGYLSAILSRTTPADAGRLSVVSKTFLSAADSDAVWNHFLPSDSHFIDSIISHSPSLANAPTKKALYLALSDRPIIIDNDQKSFQLDRKSGKKCYMLAARSLAIDWGDDRRYWNWISMPNSRFPEVAELLVVFWLHISGMINMLALSRNTQYAAYLVFKMIDGYGFQNPNYPVVLSICVEGGHDSTKIVCLDPNVEGGQHNSAVGLQRPSVRSDGWLEIEIGEFFNSGLEDKEVQMNIKEIDDYNSKCGLFLEGIEVRPK