Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07559.t1 | XP_003590874.1 | 88.1 | 268 | 28 | 1 | 1 | 268 | 1 | 264 | 2.00E-129 | 471.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07559.t1 | Q949S5 | 46.2 | 262 | 130 | 3 | 7 | 267 | 4 | 255 | 2.6e-56 | 220.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07559.t1 | G7I5K4 | 88.1 | 268 | 28 | 1 | 1 | 268 | 1 | 264 | 1.5e-129 | 471.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07559.t1 | MTR_1g079200 | 88.060 | 268 | 28 | 1 | 1 | 268 | 1 | 264 | 4.45e-173 | 478 |
MS.gene07559.t1 | MTR_1g079180 | 85.185 | 270 | 33 | 4 | 1 | 268 | 1 | 265 | 4.82e-163 | 452 |
MS.gene07559.t1 | MTR_1g079370 | 75.556 | 270 | 59 | 3 | 1 | 268 | 1 | 265 | 9.45e-147 | 411 |
MS.gene07559.t1 | MTR_1g100597 | 72.662 | 278 | 60 | 4 | 1 | 268 | 1 | 272 | 1.44e-137 | 389 |
MS.gene07559.t1 | MTR_1g079460 | 71.269 | 268 | 75 | 1 | 1 | 268 | 1 | 266 | 1.33e-134 | 381 |
MS.gene07559.t1 | MTR_1g079380 | 72.593 | 270 | 67 | 3 | 1 | 268 | 1 | 265 | 3.08e-127 | 363 |
MS.gene07559.t1 | MTR_1g079260 | 66.787 | 277 | 78 | 4 | 1 | 268 | 1 | 272 | 8.89e-126 | 358 |
MS.gene07559.t1 | MTR_1g079850 | 66.784 | 283 | 77 | 3 | 1 | 268 | 1 | 281 | 4.37e-125 | 357 |
MS.gene07559.t1 | MTR_1g079250 | 68.705 | 278 | 77 | 3 | 1 | 268 | 1 | 278 | 9.33e-121 | 347 |
MS.gene07559.t1 | MTR_1g079230 | 64.029 | 278 | 85 | 4 | 1 | 268 | 1 | 273 | 1.06e-118 | 341 |
MS.gene07559.t1 | MTR_1g100613 | 70.661 | 242 | 53 | 3 | 20 | 248 | 5 | 241 | 5.61e-115 | 330 |
MS.gene07559.t1 | MTR_3g006850 | 60.465 | 301 | 81 | 4 | 4 | 268 | 17 | 315 | 7.93e-113 | 327 |
MS.gene07559.t1 | MTR_1g026510 | 62.191 | 283 | 92 | 4 | 1 | 268 | 1 | 283 | 2.23e-112 | 326 |
MS.gene07559.t1 | MTR_3g452600 | 60.755 | 265 | 97 | 2 | 4 | 268 | 10 | 267 | 4.30e-104 | 303 |
MS.gene07559.t1 | MTR_1g079350 | 60.650 | 277 | 98 | 6 | 1 | 268 | 1 | 275 | 7.51e-100 | 293 |
MS.gene07559.t1 | MTR_3g450990 | 55.477 | 283 | 99 | 4 | 4 | 268 | 10 | 283 | 3.78e-93 | 276 |
MS.gene07559.t1 | MTR_2g079100 | 57.143 | 266 | 97 | 4 | 4 | 265 | 9 | 261 | 1.46e-92 | 274 |
MS.gene07559.t1 | MTR_1g079340 | 54.639 | 291 | 104 | 8 | 1 | 268 | 40 | 325 | 9.45e-90 | 269 |
MS.gene07559.t1 | MTR_1g079410 | 52.920 | 274 | 116 | 6 | 2 | 268 | 6 | 273 | 9.28e-89 | 265 |
MS.gene07559.t1 | MTR_1g078470 | 72.254 | 173 | 43 | 3 | 96 | 268 | 17 | 184 | 1.69e-84 | 251 |
MS.gene07559.t1 | MTR_7g096300 | 57.854 | 261 | 93 | 7 | 1 | 255 | 1 | 250 | 2.00e-82 | 262 |
MS.gene07559.t1 | MTR_1g079140 | 46.000 | 300 | 125 | 6 | 2 | 268 | 11 | 306 | 1.71e-75 | 232 |
MS.gene07559.t1 | MTR_1g079400 | 44.948 | 287 | 115 | 6 | 5 | 268 | 13 | 279 | 3.07e-71 | 220 |
MS.gene07559.t1 | MTR_7g112550 | 45.423 | 284 | 133 | 9 | 2 | 268 | 5 | 283 | 1.77e-65 | 206 |
MS.gene07559.t1 | MTR_1g079240 | 62.983 | 181 | 56 | 4 | 88 | 268 | 10 | 179 | 2.91e-64 | 199 |
MS.gene07559.t1 | MTR_1g083580 | 39.209 | 278 | 156 | 6 | 2 | 268 | 6 | 281 | 1.16e-56 | 183 |
MS.gene07559.t1 | MTR_1g079350 | 66.165 | 133 | 43 | 1 | 1 | 131 | 1 | 133 | 2.52e-50 | 165 |
MS.gene07559.t1 | MTR_7g112560 | 38.433 | 268 | 151 | 8 | 4 | 268 | 1 | 257 | 9.61e-49 | 162 |
MS.gene07559.t1 | MTR_1g076870 | 58.824 | 136 | 36 | 2 | 131 | 248 | 2 | 135 | 5.35e-46 | 151 |
MS.gene07559.t1 | MTR_4g023570 | 36.842 | 266 | 138 | 7 | 4 | 268 | 1 | 237 | 4.47e-45 | 152 |
MS.gene07559.t1 | MTR_2g042540 | 71.028 | 107 | 28 | 2 | 1 | 106 | 1 | 105 | 1.01e-41 | 140 |
MS.gene07559.t1 | MTR_1g079130 | 43.005 | 193 | 78 | 5 | 104 | 268 | 1 | 189 | 5.42e-38 | 132 |
MS.gene07559.t1 | MTR_7g096310 | 60.504 | 119 | 39 | 3 | 60 | 176 | 38 | 150 | 2.44e-34 | 122 |
MS.gene07559.t1 | MTR_1g079210 | 55.200 | 125 | 40 | 2 | 132 | 242 | 7 | 129 | 2.43e-33 | 118 |
MS.gene07559.t1 | MTR_3g058640 | 57.843 | 102 | 41 | 1 | 131 | 232 | 7 | 106 | 5.08e-32 | 114 |
MS.gene07559.t1 | MTR_1g078460 | 68.889 | 90 | 25 | 1 | 1 | 90 | 64 | 150 | 2.04e-31 | 114 |
MS.gene07559.t1 | MTR_7g103380 | 26.545 | 275 | 177 | 7 | 6 | 267 | 21 | 283 | 2.29e-29 | 112 |
MS.gene07559.t1 | MTR_1g079220 | 70.588 | 68 | 18 | 1 | 168 | 235 | 1 | 66 | 5.85e-24 | 92.4 |
MS.gene07559.t1 | MTR_0113s0040 | 27.305 | 282 | 165 | 7 | 2 | 268 | 20 | 276 | 9.35e-24 | 97.4 |
MS.gene07559.t1 | MTR_0002s0020 | 25.448 | 279 | 165 | 7 | 6 | 265 | 24 | 278 | 1.91e-19 | 85.9 |
MS.gene07559.t1 | MTR_1g101390 | 27.138 | 269 | 180 | 8 | 2 | 267 | 26 | 281 | 3.60e-19 | 85.1 |
MS.gene07559.t1 | MTR_4g102770 | 32.877 | 146 | 97 | 1 | 6 | 151 | 21 | 165 | 7.75e-19 | 84.3 |
MS.gene07559.t1 | MTR_5g010800 | 26.894 | 264 | 179 | 7 | 6 | 267 | 19 | 270 | 2.43e-18 | 82.8 |
MS.gene07559.t1 | MTR_4g083970 | 26.442 | 208 | 129 | 6 | 66 | 268 | 102 | 290 | 9.40e-17 | 78.6 |
MS.gene07559.t1 | MTR_1g079390 | 72.000 | 50 | 12 | 2 | 214 | 263 | 8 | 55 | 2.62e-15 | 68.9 |
MS.gene07559.t1 | MTR_1g050352 | 49.462 | 93 | 38 | 5 | 26 | 115 | 46 | 132 | 4.87e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07559.t1 | AT1G80110 | 46.183 | 262 | 130 | 3 | 7 | 267 | 4 | 255 | 1.65e-71 | 220 |
MS.gene07559.t1 | AT2G02360 | 42.322 | 267 | 139 | 6 | 4 | 267 | 14 | 268 | 4.67e-70 | 217 |
MS.gene07559.t1 | AT2G02340 | 39.927 | 273 | 154 | 6 | 1 | 267 | 33 | 301 | 3.15e-59 | 191 |
MS.gene07559.t1 | AT2G02240 | 40.449 | 267 | 145 | 5 | 4 | 267 | 61 | 316 | 5.80e-59 | 190 |
MS.gene07559.t1 | AT2G02250 | 39.925 | 268 | 146 | 6 | 4 | 267 | 47 | 303 | 6.00e-56 | 182 |
MS.gene07559.t1 | AT1G09155 | 40.278 | 288 | 136 | 9 | 7 | 268 | 3 | 280 | 1.81e-54 | 177 |
MS.gene07559.t1 | AT2G02230 | 34.516 | 310 | 154 | 7 | 2 | 268 | 30 | 333 | 1.89e-53 | 176 |
MS.gene07559.t1 | AT1G56250 | 40.141 | 284 | 142 | 9 | 7 | 268 | 4 | 281 | 6.98e-51 | 168 |
MS.gene07559.t1 | AT2G02310 | 35.821 | 268 | 161 | 5 | 4 | 268 | 45 | 304 | 9.51e-50 | 166 |
MS.gene07559.t1 | AT1G56240 | 39.502 | 281 | 146 | 9 | 7 | 267 | 4 | 280 | 9.89e-49 | 163 |
MS.gene07559.t1 | AT2G02350 | 36.296 | 270 | 159 | 7 | 2 | 267 | 22 | 282 | 4.20e-48 | 161 |
MS.gene07559.t1 | AT2G02320 | 37.037 | 270 | 149 | 9 | 6 | 267 | 42 | 298 | 1.14e-47 | 160 |
MS.gene07559.t1 | AT2G02300 | 36.029 | 272 | 143 | 8 | 4 | 268 | 34 | 281 | 1.38e-41 | 144 |
MS.gene07559.t1 | AT5G24560 | 37.245 | 196 | 107 | 4 | 4 | 197 | 3 | 184 | 2.08e-36 | 128 |
MS.gene07559.t1 | AT3G53000 | 29.964 | 277 | 164 | 9 | 6 | 267 | 23 | 284 | 2.99e-32 | 120 |
MS.gene07559.t1 | AT2G02350 | 33.929 | 168 | 104 | 5 | 104 | 267 | 1 | 165 | 4.97e-22 | 90.5 |
MS.gene07559.t1 | AT3G61060 | 23.864 | 264 | 190 | 5 | 6 | 268 | 27 | 280 | 4.90e-18 | 82.0 |
MS.gene07559.t1 | AT3G61060 | 23.106 | 264 | 193 | 4 | 6 | 268 | 27 | 281 | 1.59e-17 | 80.9 |
MS.gene07559.t1 | AT5G52120 | 32.051 | 156 | 100 | 2 | 1 | 151 | 18 | 172 | 3.17e-17 | 79.7 |
MS.gene07559.t1 | AT1G63090 | 27.925 | 265 | 175 | 9 | 6 | 267 | 28 | 279 | 6.26e-17 | 79.0 |
MS.gene07559.t1 | AT1G12710 | 24.727 | 275 | 171 | 6 | 6 | 267 | 30 | 281 | 6.24e-16 | 76.3 |
MS.gene07559.t1 | AT4G19850 | 28.571 | 182 | 98 | 7 | 97 | 268 | 59 | 218 | 7.13e-14 | 69.3 |
MS.gene07559.t1 | AT4G19850 | 29.508 | 183 | 95 | 8 | 97 | 268 | 17 | 176 | 8.43e-14 | 68.2 |
MS.gene07559.t1 | AT1G65390 | 27.933 | 179 | 106 | 5 | 94 | 268 | 251 | 410 | 5.81e-12 | 65.5 |
MS.gene07559.t1 | AT1G33920 | 27.273 | 176 | 102 | 6 | 99 | 268 | 9 | 164 | 8.06e-12 | 62.4 |
MS.gene07559.t1 | AT4G19840 | 28.070 | 171 | 100 | 6 | 102 | 268 | 94 | 245 | 2.65e-11 | 62.4 |
MS.gene07559.t1 | AT1G12710 | 27.673 | 159 | 110 | 3 | 6 | 163 | 30 | 184 | 4.11e-11 | 62.8 |
Find 70 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGAACTTCTTTATCTTCT+AGG | 0.116706 | 1.2:-62201764 | None:intergenic |
AGCTGCATACTGAGTGTTTC+GGG | 0.254063 | 1.2:-62201520 | None:intergenic |
TGTTGCCCACCTTCCACATT+TGG | 0.295277 | 1.2:-62201657 | None:intergenic |
ATCGGGGAGTTCTTCAATTC+AGG | 0.312491 | 1.2:+62201741 | MS.gene07559:CDS |
CTGCCGATTCCGACGCCGTC+TGG | 0.326987 | 1.2:+62199334 | MS.gene07559:CDS |
GATAACACCACGGGATAGTT+TGG | 0.336653 | 1.2:-62201585 | None:intergenic |
TGATCATTGTCGATGATGAT+AGG | 0.340168 | 1.2:-62199468 | None:intergenic |
CTAGATCTCTCGCCATTGAT+TGG | 0.340546 | 1.2:+62199683 | MS.gene07559:CDS |
ACAAGAAGCTCAGCGACTTC+AGG | 0.347960 | 1.2:-62201450 | None:intergenic |
CTTGTGTTCAAGATGATTGA+TGG | 0.366427 | 1.2:+62201546 | MS.gene07559:CDS |
TAGATCTCTCGCCATTGATT+GGG | 0.368795 | 1.2:+62199684 | MS.gene07559:CDS |
AGAAGTTCAAATGAATATAA+AGG | 0.377032 | 1.2:+62201776 | MS.gene07559:CDS |
GACAGAGTTTGAGGAATTGC+CGG | 0.379323 | 1.2:+62199227 | MS.gene07559:CDS |
GGATTTCTATGCCTAATTCC+AGG | 0.380639 | 1.2:+62199731 | MS.gene07559:CDS |
TAGTACTAAAATTGTCTGTT+TGG | 0.397688 | 1.2:+62201632 | MS.gene07559:CDS |
GGGTGGTTGGAGATTGAAAT+CGG | 0.403576 | 1.2:+62201723 | MS.gene07559:CDS |
CAAAAGAATGACAGAGTTTG+AGG | 0.409289 | 1.2:+62199218 | None:intergenic |
AAGCTGCATACTGAGTGTTT+CGG | 0.411984 | 1.2:-62201521 | None:intergenic |
AAGTGTGGTCTCTTTCTTGA+AGG | 0.415452 | 1.2:+62201819 | MS.gene07559:CDS |
ATCTAAGCTAACCTGGAATT+AGG | 0.417358 | 1.2:-62199742 | None:intergenic |
TTCTTGAAGGAATCGAAGTC+AGG | 0.419195 | 1.2:+62201832 | MS.gene07559:CDS |
TGAAATGCAGAGCTTTCAAT+TGG | 0.419927 | 1.2:+62199624 | MS.gene07559:intron |
ATGATAGACGCTATTGGAAC+TGG | 0.420013 | 1.2:+62199710 | MS.gene07559:CDS |
ATTCCAGACGGCGTCGGAAT+CGG | 0.451722 | 1.2:-62199337 | None:intergenic |
CGGAGTTGTGCGAGAGAGAA+TGG | 0.455681 | 1.2:-62199265 | None:intergenic |
GGTGGTTGGAGATTGAAATC+GGG | 0.460102 | 1.2:+62201724 | MS.gene07559:CDS |
GTTACTTAATTGTCTTACTT+AGG | 0.474668 | 1.2:-62201855 | None:intergenic |
CAAGAAGCTCAGCGACTTCA+GGG | 0.475210 | 1.2:-62201449 | None:intergenic |
CGGCCTAGTGTGAGAAGCGA+TGG | 0.477390 | 1.2:+62201702 | MS.gene07559:CDS |
GAGAGTCTGCCGGCGTCAGC+CGG | 0.494209 | 1.2:-62199285 | None:intergenic |
GGCAGCAGAAAGGAATGTCT+TGG | 0.517109 | 1.2:-62199316 | None:intergenic |
TCTATCATCACCCCAATCAA+TGG | 0.521541 | 1.2:-62199695 | None:intergenic |
ATGGCGGAAAGGTAACCTTC+CGG | 0.527322 | 1.2:-62199246 | None:intergenic |
TTCAAGATGATTGATGGCTA+TGG | 0.530465 | 1.2:+62201552 | MS.gene07559:CDS |
GGGGTGATGATAGACGCTAT+TGG | 0.540557 | 1.2:+62199704 | MS.gene07559:CDS |
AGAGTCGATGAAATGAGAAT+CGG | 0.543980 | 1.2:-62199373 | None:intergenic |
CACCCATCGCTTCTCACACT+AGG | 0.546742 | 1.2:-62201705 | None:intergenic |
CATTCTCTCTCGCACAACTC+CGG | 0.556161 | 1.2:+62199266 | MS.gene07559:CDS |
GATCATTGTCGATGATGATA+GGG | 0.558501 | 1.2:-62199467 | None:intergenic |
CGTCGGAATCGGCAGCAGAA+AGG | 0.567395 | 1.2:-62199326 | None:intergenic |
GGGCAACATAACAGCGCAGT+AGG | 0.570300 | 1.2:+62201672 | MS.gene07559:CDS |
AGATCTCTCGCCATTGATTG+GGG | 0.570476 | 1.2:+62199685 | MS.gene07559:CDS |
GGAAACAACGGAGAGTCTGC+CGG | 0.570524 | 1.2:-62199295 | None:intergenic |
GTAGGAGCGTTGGCAAGTGA+AGG | 0.572663 | 1.2:-62199411 | None:intergenic |
GTGTTATCAATTTGTGTCGA+AGG | 0.573911 | 1.2:+62201600 | MS.gene07559:CDS |
TGTGAGAAGCGATGGGTGGT+TGG | 0.576323 | 1.2:+62201710 | MS.gene07559:CDS |
TTTCAATTGGACAGAAAGAG+TGG | 0.585552 | 1.2:+62199637 | MS.gene07559:CDS |
CGCACAACTCCGGCTGACGC+CGG | 0.587266 | 1.2:+62199276 | MS.gene07559:CDS |
CATCATCGACAATGATCAGA+AGG | 0.590425 | 1.2:+62199473 | MS.gene07559:CDS |
ACACAAATTGATAACACCAC+GGG | 0.605212 | 1.2:-62201594 | None:intergenic |
TTATCAATTTGTGTCGAAGG+TGG | 0.608233 | 1.2:+62201603 | MS.gene07559:CDS |
GTGGTTGGAGATTGAAATCG+GGG | 0.611248 | 1.2:+62201725 | MS.gene07559:CDS |
TGCGAGAGAGAATGGCGGAA+AGG | 0.620409 | 1.2:-62199257 | None:intergenic |
GATGATTATAATTCGAAGTG+TGG | 0.621156 | 1.2:+62201804 | MS.gene07559:CDS |
TGTCTGTTTGGATCCAAATG+TGG | 0.625217 | 1.2:+62201644 | MS.gene07559:CDS |
GAGTTTGAGGAATTGCCGGA+AGG | 0.635608 | 1.2:+62199231 | MS.gene07559:CDS |
GGCCTAGTGTGAGAAGCGAT+GGG | 0.643186 | 1.2:+62201703 | MS.gene07559:CDS |
TGGATCCAAATGTGGAAGGT+GGG | 0.645556 | 1.2:+62201652 | MS.gene07559:CDS |
CGATGAAATGAGAATCGGAA+GGG | 0.647280 | 1.2:-62199368 | None:intergenic |
AAAGTGATTCCAGACGGCGT+CGG | 0.652221 | 1.2:-62199343 | None:intergenic |
ACAGCGCAGTAGGATTGCAA+CGG | 0.659500 | 1.2:+62201682 | MS.gene07559:CDS |
GACACAAATTGATAACACCA+CGG | 0.662112 | 1.2:-62201595 | None:intergenic |
TTGGATCCAAATGTGGAAGG+TGG | 0.663222 | 1.2:+62201651 | MS.gene07559:CDS |
AAGGAATGTCTTGGAAACAA+CGG | 0.668714 | 1.2:-62199307 | None:intergenic |
TCGATGAAATGAGAATCGGA+AGG | 0.671701 | 1.2:-62199369 | None:intergenic |
TGTTTGGATCCAAATGTGGA+AGG | 0.673961 | 1.2:+62201648 | MS.gene07559:CDS |
AGGGAGAAAGTGATTCCAGA+CGG | 0.678403 | 1.2:-62199349 | None:intergenic |
TCAGAATCCAAACTATCCCG+TGG | 0.688070 | 1.2:+62201578 | MS.gene07559:CDS |
CTAGTGTGAGAAGCGATGGG+TGG | 0.709944 | 1.2:+62201706 | MS.gene07559:CDS |
AGTTGTGCGAGAGAGAATGG+CGG | 0.737972 | 1.2:-62199262 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACTTAAATAAAATTGAAAT+TGG | - | chr1.2:62199928-62199947 | None:intergenic | 10.0% |
!!! | TTGATATTTTAAGATTTTTT+TGG | + | chr1.2:62199572-62199591 | MS.gene07559:intron | 10.0% |
!! | AGACATAATAATAATAGTTA+AGG | - | chr1.2:62201223-62201242 | None:intergenic | 15.0% |
!! | TGATACATTGAAAAATAAAT+AGG | - | chr1.2:62200384-62200403 | None:intergenic | 15.0% |
!!! | ACTAAATTTTGTATTCATAA+AGG | - | chr1.2:62199833-62199852 | None:intergenic | 15.0% |
!!! | CTATATTTGAAACTTAATTA+TGG | - | chr1.2:62200740-62200759 | None:intergenic | 15.0% |
!!! | TACATCTCTATTTTTTATTT+GGG | - | chr1.2:62201365-62201384 | None:intergenic | 15.0% |
!!! | TTACATCTCTATTTTTTATT+TGG | - | chr1.2:62201366-62201385 | None:intergenic | 15.0% |
!! | AGAAGTTCAAATGAATATAA+AGG | + | chr1.2:62201776-62201795 | MS.gene07559:CDS | 20.0% |
!! | AGCATATATAACTTATTAAC+TGG | + | chr1.2:62201254-62201273 | MS.gene07559:intron | 20.0% |
!! | AGTAAATTTCAAAGAAAACA+TGG | - | chr1.2:62201102-62201121 | None:intergenic | 20.0% |
!! | AGTTGCAAATATTAGAATAT+AGG | - | chr1.2:62201417-62201436 | None:intergenic | 20.0% |
!! | ATGAATACAAAATTTAGTTG+AGG | + | chr1.2:62199835-62199854 | MS.gene07559:intron | 20.0% |
!! | ATGAGAAATTCAATAATCAA+AGG | - | chr1.2:62199995-62200014 | None:intergenic | 20.0% |
!! | CATTGAAAAATAAATAGGAT+TGG | - | chr1.2:62200379-62200398 | None:intergenic | 20.0% |
!! | GCATATATAACTTATTAACT+GGG | + | chr1.2:62201255-62201274 | MS.gene07559:intron | 20.0% |
!!! | AAATTTTGTATTCATAAAGG+CGG | - | chr1.2:62199830-62199849 | None:intergenic | 20.0% |
!!! | ATTTGAAACTTAATTATGGA+AGG | - | chr1.2:62200736-62200755 | None:intergenic | 20.0% |
!!! | TTTGAAACTTAATTATGGAA+GGG | - | chr1.2:62200735-62200754 | None:intergenic | 20.0% |
!!! | TTTGAAATTTACTTTTGACT+TGG | + | chr1.2:62201109-62201128 | MS.gene07559:intron | 20.0% |
! | ATATAACTTATTAACTGGGT+AGG | + | chr1.2:62201259-62201278 | MS.gene07559:intron | 25.0% |
! | ATTCTAATATTTGCAACTGT+TGG | + | chr1.2:62201419-62201438 | MS.gene07559:intron | 25.0% |
! | ATTGATACTAAAATCGAGAA+AGG | + | chr1.2:62199875-62199894 | MS.gene07559:intron | 25.0% |
! | CAATTAGGATAAAAAACCTA+TGG | - | chr1.2:62200347-62200366 | None:intergenic | 25.0% |
! | TAATAGACTATATCAAGATG+AGG | - | chr1.2:62200924-62200943 | None:intergenic | 25.0% |
! | TAGTACTAAAATTGTCTGTT+TGG | + | chr1.2:62201632-62201651 | MS.gene07559:CDS | 25.0% |
! | TTTCAAAGAAAACATGGTAT+TGG | - | chr1.2:62201096-62201115 | None:intergenic | 25.0% |
! | TTTGAACTTCTTTATCTTCT+AGG | - | chr1.2:62201767-62201786 | None:intergenic | 25.0% |
!!! | AGACAATTTTAGTACTATCA+TGG | - | chr1.2:62201629-62201648 | None:intergenic | 25.0% |
!!! | GAGCAGAGATTTTAAAAATT+TGG | - | chr1.2:62200412-62200431 | None:intergenic | 25.0% |
!!! | TTTTTTGGCTTCATATTAGT+GGG | + | chr1.2:62201475-62201494 | MS.gene07559:CDS | 25.0% |
AACTGCATCATTAAAGATGA+AGG | - | chr1.2:62200312-62200331 | None:intergenic | 30.0% | |
AATATTTGCAACTGTTGGAT+AGG | + | chr1.2:62201424-62201443 | MS.gene07559:intron | 30.0% | |
AATCTCAACACAACAATCAT+TGG | - | chr1.2:62199905-62199924 | None:intergenic | 30.0% | |
ACTTAATATCTAAGCTAACC+TGG | - | chr1.2:62199752-62199771 | None:intergenic | 30.0% | |
AGTTATTGCTTCATTTCCAT+AGG | + | chr1.2:62200328-62200347 | MS.gene07559:intron | 30.0% | |
ATGATGTCAACAAAATGAGT+CGG | + | chr1.2:62200877-62200896 | MS.gene07559:intron | 30.0% | |
CAAAATTTAGTTGAGGCAAA+TGG | + | chr1.2:62199842-62199861 | MS.gene07559:intron | 30.0% | |
CAACTTGAATGTAATAAGCA+TGG | - | chr1.2:62200687-62200706 | None:intergenic | 30.0% | |
GATGATTATAATTCGAAGTG+TGG | + | chr1.2:62201804-62201823 | MS.gene07559:CDS | 30.0% | |
TCATTAAAGATGAAGGATCT+TGG | - | chr1.2:62200305-62200324 | None:intergenic | 30.0% | |
! | AAATTTGGGTTTGAAATCGA+GGG | - | chr1.2:62200037-62200056 | None:intergenic | 30.0% |
! | ACTGAACGTGCTTTAAATTT+GGG | - | chr1.2:62200051-62200070 | None:intergenic | 30.0% |
! | CAAGTTGAACACTATTATAC+TGG | + | chr1.2:62200830-62200849 | MS.gene07559:intron | 30.0% |
! | TAAATTTGGGTTTGAAATCG+AGG | - | chr1.2:62200038-62200057 | None:intergenic | 30.0% |
! | TTACAATTCTCCTCATTTTC+TGG | + | chr1.2:62199967-62199986 | MS.gene07559:intron | 30.0% |
!!! | GTTTTTTGGCTTCATATTAG+TGG | + | chr1.2:62201474-62201493 | MS.gene07559:CDS | 30.0% |
AACAATGTGTAGCAATACCA+AGG | - | chr1.2:62200481-62200500 | None:intergenic | 35.0% | |
AAGGAATGTCTTGGAAACAA+CGG | - | chr1.2:62199310-62199329 | None:intergenic | 35.0% | |
ACAAATATTTGATGTCCCTG+TGG | + | chr1.2:62200086-62200105 | MS.gene07559:intron | 35.0% | |
AGAGTCGATGAAATGAGAAT+CGG | - | chr1.2:62199376-62199395 | None:intergenic | 35.0% | |
AGATAGATGAGTGAATAGCA+TGG | - | chr1.2:62200257-62200276 | None:intergenic | 35.0% | |
ATATCAAGATGAGGACTACA+AGG | - | chr1.2:62200915-62200934 | None:intergenic | 35.0% | |
ATCAAAGGAACCAGAAAATG+AGG | - | chr1.2:62199980-62199999 | None:intergenic | 35.0% | |
ATCTAAGCTAACCTGGAATT+AGG | - | chr1.2:62199745-62199764 | None:intergenic | 35.0% | |
ATGAAGACTGATGACATTCA+TGG | + | chr1.2:62200649-62200668 | MS.gene07559:intron | 35.0% | |
ATGGAAGGGATGTCAAAAAA+TGG | - | chr1.2:62200721-62200740 | None:intergenic | 35.0% | |
CTTCCAGTGTTGTCAAATAT+TGG | + | chr1.2:62200133-62200152 | MS.gene07559:intron | 35.0% | |
CTTGTGTTCAAGATGATTGA+TGG | + | chr1.2:62201546-62201565 | MS.gene07559:CDS | 35.0% | |
GATCATTGTCGATGATGATA+GGG | - | chr1.2:62199470-62199489 | None:intergenic | 35.0% | |
GCAATACCAAGGCTTAAAAA+AGG | - | chr1.2:62200470-62200489 | None:intergenic | 35.0% | |
GTGTTATCAATTTGTGTCGA+AGG | + | chr1.2:62201600-62201619 | MS.gene07559:CDS | 35.0% | |
TAGCCAATATTTGACAACAC+TGG | - | chr1.2:62200139-62200158 | None:intergenic | 35.0% | |
TGAAATGCAGAGCTTTCAAT+TGG | + | chr1.2:62199624-62199643 | MS.gene07559:intron | 35.0% | |
TGATCATTGTCGATGATGAT+AGG | - | chr1.2:62199471-62199490 | None:intergenic | 35.0% | |
TGGAAGGGATGTCAAAAAAT+GGG | - | chr1.2:62200720-62200739 | None:intergenic | 35.0% | |
TTATCAATTTGTGTCGAAGG+TGG | + | chr1.2:62201603-62201622 | MS.gene07559:CDS | 35.0% | |
TTCAGATTGCTAATAAGCCT+TGG | + | chr1.2:62199595-62199614 | MS.gene07559:intron | 35.0% | |
TTTCAATTGGACAGAAAGAG+TGG | + | chr1.2:62199637-62199656 | MS.gene07559:CDS | 35.0% | |
! | ACACAAATTGATAACACCAC+GGG | - | chr1.2:62201597-62201616 | None:intergenic | 35.0% |
! | AGAAACACATTTTAAGCCAC+AGG | - | chr1.2:62200105-62200124 | None:intergenic | 35.0% |
! | GAAACACATTTTAAGCCACA+GGG | - | chr1.2:62200104-62200123 | None:intergenic | 35.0% |
! | GACACAAATTGATAACACCA+CGG | - | chr1.2:62201598-62201617 | None:intergenic | 35.0% |
! | GACTGAACGTGCTTTAAATT+TGG | - | chr1.2:62200052-62200071 | None:intergenic | 35.0% |
! | GTGTTGTCAAATATTGGCTA+TGG | + | chr1.2:62200139-62200158 | MS.gene07559:intron | 35.0% |
! | TTCAAGATGATTGATGGCTA+TGG | + | chr1.2:62201552-62201571 | MS.gene07559:CDS | 35.0% |
! | TTGTCAAATATTGGCTATGG+TGG | + | chr1.2:62200142-62200161 | MS.gene07559:intron | 35.0% |
!!! | AGATACAGAGCTTTTTTGGT+AGG | - | chr1.2:62199432-62199451 | None:intergenic | 35.0% |
!!! | AGCAAGATACAGAGCTTTTT+TGG | - | chr1.2:62199436-62199455 | None:intergenic | 35.0% |
!!! | ATACTTTTTTCTTTGTGCCG+TGG | + | chr1.2:62200176-62200195 | MS.gene07559:intron | 35.0% |
!!! | CTGAGCTTCTTGTTGTTTTT+TGG | + | chr1.2:62201460-62201479 | MS.gene07559:CDS | 35.0% |
AAATTGTTTGGGCTAAGGGT+TGG | + | chr1.2:62201284-62201303 | MS.gene07559:intron | 40.0% | |
AACAAATGAACGTCTGAGTG+AGG | - | chr1.2:62201158-62201177 | None:intergenic | 40.0% | |
AAGCTGCATACTGAGTGTTT+CGG | - | chr1.2:62201524-62201543 | None:intergenic | 40.0% | |
AAGTGTGGTCTCTTTCTTGA+AGG | + | chr1.2:62201819-62201838 | MS.gene07559:CDS | 40.0% | |
ACTGGGTAGGTCAAATTGTT+TGG | + | chr1.2:62201272-62201291 | MS.gene07559:intron | 40.0% | |
AGGTCAAATTGTTTGGGCTA+AGG | + | chr1.2:62201279-62201298 | MS.gene07559:intron | 40.0% | |
AGTTGAGGCAAATGGATAAG+TGG | + | chr1.2:62199850-62199869 | MS.gene07559:intron | 40.0% | |
ATGATAGACGCTATTGGAAC+TGG | + | chr1.2:62199710-62199729 | MS.gene07559:CDS | 40.0% | |
CATCATCGACAATGATCAGA+AGG | + | chr1.2:62199473-62199492 | MS.gene07559:CDS | 40.0% | |
CGATGAAATGAGAATCGGAA+GGG | - | chr1.2:62199371-62199390 | None:intergenic | 40.0% | |
CTGGGTAGGTCAAATTGTTT+GGG | + | chr1.2:62201273-62201292 | MS.gene07559:intron | 40.0% | |
GGAAGGGATGTCAAAAAATG+GGG | - | chr1.2:62200719-62200738 | None:intergenic | 40.0% | |
GGATTTCTATGCCTAATTCC+AGG | + | chr1.2:62199731-62199750 | MS.gene07559:CDS | 40.0% | |
GGTCAAATTGTTTGGGCTAA+GGG | + | chr1.2:62201280-62201299 | MS.gene07559:intron | 40.0% | |
TAAAGCACGTTCAGTCAAAC+CGG | + | chr1.2:62200056-62200075 | MS.gene07559:intron | 40.0% | |
TCAAATATTTGTCCGAGCAC+CGG | - | chr1.2:62200078-62200097 | None:intergenic | 40.0% | |
TCGATGAAATGAGAATCGGA+AGG | - | chr1.2:62199372-62199391 | None:intergenic | 40.0% | |
TCTATCATCACCCCAATCAA+TGG | - | chr1.2:62199698-62199717 | None:intergenic | 40.0% | |
TCTGCATTTCAACACATCCA+AGG | - | chr1.2:62199615-62199634 | None:intergenic | 40.0% | |
TCTTGTAATCTCCGACAACA+GGG | + | chr1.2:62199502-62199521 | MS.gene07559:intron | 40.0% | |
TGTAATAAGCATGGCAGACA+AGG | - | chr1.2:62200678-62200697 | None:intergenic | 40.0% | |
TGTCTGTTTGGATCCAAATG+TGG | + | chr1.2:62201644-62201663 | MS.gene07559:CDS | 40.0% | |
TGTTTGGATCCAAATGTGGA+AGG | + | chr1.2:62201648-62201667 | MS.gene07559:CDS | 40.0% | |
TTCTTGAAGGAATCGAAGTC+AGG | + | chr1.2:62201832-62201851 | MS.gene07559:CDS | 40.0% | |
TTCTTGTAATCTCCGACAAC+AGG | + | chr1.2:62199501-62199520 | MS.gene07559:intron | 40.0% | |
TTGAAATGCGCACATGTCTA+CGG | + | chr1.2:62200957-62200976 | MS.gene07559:intron | 40.0% | |
! | ACTCAGACGTTCATTTGTTG+AGG | + | chr1.2:62201159-62201178 | MS.gene07559:intron | 40.0% |
! | TAGATCTCTCGCCATTGATT+GGG | + | chr1.2:62199684-62199703 | MS.gene07559:CDS | 40.0% |
!! | ATGAAGGATCTTGGTGTTCA+AGG | - | chr1.2:62200296-62200315 | None:intergenic | 40.0% |
AAGTGATGTGCTATCGATGG+TGG | - | chr1.2:62200210-62200229 | None:intergenic | 45.0% | |
AATCTCCGACAACAGGGAAA+GGG | + | chr1.2:62199508-62199527 | MS.gene07559:intron | 45.0% | |
AGCTGCATACTGAGTGTTTC+GGG | - | chr1.2:62201523-62201542 | None:intergenic | 45.0% | |
AGGGAGAAAGTGATTCCAGA+CGG | - | chr1.2:62199352-62199371 | None:intergenic | 45.0% | |
AGGTCTGACAGTAGATTGCT+TGG | - | chr1.2:62201138-62201157 | None:intergenic | 45.0% | |
ATCGGGGAGTTCTTCAATTC+AGG | + | chr1.2:62201741-62201760 | MS.gene07559:CDS | 45.0% | |
CAGAAGTGATGTGCTATCGA+TGG | - | chr1.2:62200213-62200232 | None:intergenic | 45.0% | |
CTAGATCTCTCGCCATTGAT+TGG | + | chr1.2:62199683-62199702 | MS.gene07559:CDS | 45.0% | |
GACAGAGTTTGAGGAATTGC+CGG | + | chr1.2:62199227-62199246 | MS.gene07559:CDS | 45.0% | |
GATAACACCACGGGATAGTT+TGG | - | chr1.2:62201588-62201607 | None:intergenic | 45.0% | |
GGGTGGTTGGAGATTGAAAT+CGG | + | chr1.2:62201723-62201742 | MS.gene07559:CDS | 45.0% | |
GGTGGTTGGAGATTGAAATC+GGG | + | chr1.2:62201724-62201743 | MS.gene07559:CDS | 45.0% | |
GTGGTTGGAGATTGAAATCG+GGG | + | chr1.2:62201725-62201744 | MS.gene07559:CDS | 45.0% | |
TAATCTCCGACAACAGGGAA+AGG | + | chr1.2:62199507-62199526 | MS.gene07559:intron | 45.0% | |
TCAGAATCCAAACTATCCCG+TGG | + | chr1.2:62201578-62201597 | MS.gene07559:CDS | 45.0% | |
TCATCAACAAGGACAGCAGA+TGG | + | chr1.2:62200611-62200630 | MS.gene07559:intron | 45.0% | |
TGCTGAGTCCTTCATCAACA+AGG | + | chr1.2:62200600-62200619 | MS.gene07559:intron | 45.0% | |
TGGATCCAAATGTGGAAGGT+GGG | + | chr1.2:62201652-62201671 | MS.gene07559:CDS | 45.0% | |
TTGGATCCAAATGTGGAAGG+TGG | + | chr1.2:62201651-62201670 | MS.gene07559:CDS | 45.0% | |
TTTCTCCCTTTCCCTGTTGT+CGG | - | chr1.2:62199516-62199535 | None:intergenic | 45.0% | |
! | AGATCTCTCGCCATTGATTG+GGG | + | chr1.2:62199685-62199704 | MS.gene07559:CDS | 45.0% |
! | GATTGGTTGTCGCGACAATT+AGG | - | chr1.2:62200362-62200381 | None:intergenic | 45.0% |
! | TCTGCTGTCCTTGTTGATGA+AGG | - | chr1.2:62200611-62200630 | None:intergenic | 45.0% |
!! | AAATGAGTCGGCTTGTGTCT+AGG | + | chr1.2:62200889-62200908 | MS.gene07559:intron | 45.0% |
!! | CTTGGTGTTCAAGGTGAACT+TGG | - | chr1.2:62200287-62200306 | None:intergenic | 45.0% |
!!! | AGCTTTTTTGGTAGGAGCGT+TGG | - | chr1.2:62199424-62199443 | None:intergenic | 45.0% |
!!! | GCTGCTCCTTTTTTAAGCCT+TGG | + | chr1.2:62200461-62200480 | MS.gene07559:intron | 45.0% |
AAAGTGATTCCAGACGGCGT+CGG | - | chr1.2:62199346-62199365 | None:intergenic | 50.0% | |
ACAAGAAGCTCAGCGACTTC+AGG | - | chr1.2:62201453-62201472 | None:intergenic | 50.0% | |
ACAGCGCAGTAGGATTGCAA+CGG | + | chr1.2:62201682-62201701 | MS.gene07559:CDS | 50.0% | |
AGGACAGCAGATGGTCTTTG+AGG | + | chr1.2:62200620-62200639 | MS.gene07559:intron | 50.0% | |
AGTTGTGCGAGAGAGAATGG+CGG | - | chr1.2:62199265-62199284 | None:intergenic | 50.0% | |
CAAGAAGCTCAGCGACTTCA+GGG | - | chr1.2:62201452-62201471 | None:intergenic | 50.0% | |
CATTCTCTCTCGCACAACTC+CGG | + | chr1.2:62199266-62199285 | MS.gene07559:CDS | 50.0% | |
GACCAATGCAGTAGCTGACT+AGG | + | chr1.2:62201022-62201041 | MS.gene07559:intron | 50.0% | |
GAGTTTGAGGAATTGCCGGA+AGG | + | chr1.2:62199231-62199250 | MS.gene07559:CDS | 50.0% | |
GGCAGCAGAAAGGAATGTCT+TGG | - | chr1.2:62199319-62199338 | None:intergenic | 50.0% | |
GGGGTGATGATAGACGCTAT+TGG | + | chr1.2:62199704-62199723 | MS.gene07559:CDS | 50.0% | |
GGTAAGATGCAGTGCATCTG+CGG | - | chr1.2:62201075-62201094 | None:intergenic | 50.0% | |
GTAAGATGCAGTGCATCTGC+GGG | - | chr1.2:62201074-62201093 | None:intergenic | 50.0% | |
GTATCTGTCCTTAGCAGCTG+TGG | + | chr1.2:62201186-62201205 | MS.gene07559:intron | 50.0% | |
TGTTGCCCACCTTCCACATT+TGG | - | chr1.2:62201660-62201679 | None:intergenic | 50.0% | |
TTCACTAGCCACAGCTGCTA+AGG | - | chr1.2:62201197-62201216 | None:intergenic | 50.0% | |
! | AAATCGAGGGCATAGCTACG+TGG | - | chr1.2:62200024-62200043 | None:intergenic | 50.0% |
! | ATGGCGGAAAGGTAACCTTC+CGG | - | chr1.2:62199249-62199268 | None:intergenic | 50.0% |
!! | GATGTGCTATCGATGGTGGA+TGG | - | chr1.2:62200206-62200225 | None:intergenic | 50.0% |
!! | GCATTGGTCTTCAGCTGCAA+GGG | - | chr1.2:62201011-62201030 | None:intergenic | 50.0% |
!! | TGCATTGGTCTTCAGCTGCA+AGG | - | chr1.2:62201012-62201031 | None:intergenic | 50.0% |
CACCCATCGCTTCTCACACT+AGG | - | chr1.2:62201708-62201727 | None:intergenic | 55.0% | |
CGGAGTTGTGCGAGAGAGAA+TGG | - | chr1.2:62199268-62199287 | None:intergenic | 55.0% | |
CGTTCAGTCAAACCGGTGCT+CGG | + | chr1.2:62200063-62200082 | MS.gene07559:intron | 55.0% | |
CTAGTGTGAGAAGCGATGGG+TGG | + | chr1.2:62201706-62201725 | MS.gene07559:CDS | 55.0% | |
GGAAACAACGGAGAGTCTGC+CGG | - | chr1.2:62199298-62199317 | None:intergenic | 55.0% | |
GGCCTAGTCAGCTACTGCAT+TGG | - | chr1.2:62201027-62201046 | None:intergenic | 55.0% | |
GGCCTAGTGTGAGAAGCGAT+GGG | + | chr1.2:62201703-62201722 | MS.gene07559:CDS | 55.0% | |
GGGCAACATAACAGCGCAGT+AGG | + | chr1.2:62201672-62201691 | MS.gene07559:CDS | 55.0% | |
GGTCTTCAGCTGCAAGGGTA+AGG | - | chr1.2:62201006-62201025 | None:intergenic | 55.0% | |
GTGTCCAGTGTCTACGCAAG+TGG | - | chr1.2:62201048-62201067 | None:intergenic | 55.0% | |
TAGGCCACTTGCGTAGACAC+TGG | + | chr1.2:62201041-62201060 | MS.gene07559:intron | 55.0% | |
TGTGAGAAGCGATGGGTGGT+TGG | + | chr1.2:62201710-62201729 | MS.gene07559:CDS | 55.0% | |
! | ATTCCAGACGGCGTCGGAAT+CGG | - | chr1.2:62199340-62199359 | None:intergenic | 55.0% |
! | TGCGAGAGAGAATGGCGGAA+AGG | - | chr1.2:62199260-62199279 | None:intergenic | 55.0% |
!! | GTAGGAGCGTTGGCAAGTGA+AGG | - | chr1.2:62199414-62199433 | None:intergenic | 55.0% |
CGGCCTAGTGTGAGAAGCGA+TGG | + | chr1.2:62201702-62201721 | MS.gene07559:CDS | 60.0% | |
CGTCGGAATCGGCAGCAGAA+AGG | - | chr1.2:62199329-62199348 | None:intergenic | 60.0% | |
!! | CGATGGTGGATGGCAGACCA+CGG | - | chr1.2:62200196-62200215 | None:intergenic | 60.0% |
CGCACAACTCCGGCTGACGC+CGG | + | chr1.2:62199276-62199295 | MS.gene07559:CDS | 70.0% | |
GAGAGTCTGCCGGCGTCAGC+CGG | - | chr1.2:62199288-62199307 | None:intergenic | 70.0% | |
!! | CTGCCGATTCCGACGCCGTC+TGG | + | chr1.2:62199334-62199353 | MS.gene07559:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 62199225 | 62201863 | 62199225 | ID=MS.gene07559 |
chr1.2 | mRNA | 62199225 | 62201863 | 62199225 | ID=MS.gene07559.t1;Parent=MS.gene07559 |
chr1.2 | exon | 62199225 | 62199494 | 62199225 | ID=MS.gene07559.t1.exon1;Parent=MS.gene07559.t1 |
chr1.2 | CDS | 62199225 | 62199494 | 62199225 | ID=cds.MS.gene07559.t1;Parent=MS.gene07559.t1 |
chr1.2 | exon | 62199634 | 62199752 | 62199634 | ID=MS.gene07559.t1.exon2;Parent=MS.gene07559.t1 |
chr1.2 | CDS | 62199634 | 62199752 | 62199634 | ID=cds.MS.gene07559.t1;Parent=MS.gene07559.t1 |
chr1.2 | exon | 62201446 | 62201863 | 62201446 | ID=MS.gene07559.t1.exon3;Parent=MS.gene07559.t1 |
chr1.2 | CDS | 62201446 | 62201863 | 62201446 | ID=cds.MS.gene07559.t1;Parent=MS.gene07559.t1 |
Gene Sequence |
Protein sequence |