AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07556

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07556.t1 MTR_1g079140 94.498 309 17 0 1 309 2 310 0.0 598
MS.gene07556.t1 MTR_1g079130 85.279 197 25 2 113 309 1 193 9.55e-119 339
MS.gene07556.t1 MTR_1g079260 51.864 295 115 7 12 305 4 272 2.61e-93 278
MS.gene07556.t1 MTR_1g079370 49.164 299 112 6 11 305 3 265 1.06e-92 276
MS.gene07556.t1 MTR_1g079380 46.823 299 125 5 11 308 3 268 1.82e-85 259
MS.gene07556.t1 MTR_1g100597 47.987 298 128 6 12 308 4 275 7.50e-84 254
MS.gene07556.t1 MTR_1g079460 47.138 297 124 5 10 305 2 266 7.73e-82 248
MS.gene07556.t1 MTR_1g079180 47.157 299 118 8 11 305 3 265 6.59e-81 246
MS.gene07556.t1 MTR_1g079200 46.644 298 120 6 11 305 3 264 6.12e-80 243
MS.gene07556.t1 MTR_1g079410 46.254 307 125 6 5 305 1 273 2.70e-77 237
MS.gene07556.t1 MTR_1g079850 44.482 299 144 5 10 305 2 281 4.45e-74 229
MS.gene07556.t1 MTR_1g079230 44.482 299 138 6 12 308 4 276 5.70e-71 221
MS.gene07556.t1 MTR_1g100613 46.360 261 119 4 28 288 5 244 1.59e-69 216
MS.gene07556.t1 MTR_1g079250 44.186 301 135 7 12 305 4 278 2.91e-66 210
MS.gene07556.t1 MTR_7g112550 41.237 291 154 8 15 305 10 283 3.10e-66 209
MS.gene07556.t1 MTR_1g026510 41.667 300 149 5 12 305 4 283 3.85e-66 209
MS.gene07556.t1 MTR_1g083580 40.273 293 151 8 15 305 11 281 5.37e-65 206
MS.gene07556.t1 MTR_7g112560 41.438 292 134 5 15 306 4 258 1.25e-64 204
MS.gene07556.t1 MTR_1g079400 41.781 292 144 5 15 306 15 280 1.05e-63 202
MS.gene07556.t1 MTR_3g452600 40.476 294 139 5 12 305 10 267 1.89e-63 201
MS.gene07556.t1 MTR_3g006850 42.812 313 152 10 12 308 17 318 2.96e-61 197
MS.gene07556.t1 MTR_4g023570 39.456 294 117 6 15 306 4 238 3.06e-59 190
MS.gene07556.t1 MTR_2g079100 39.590 293 131 6 14 302 11 261 6.86e-56 182
MS.gene07556.t1 MTR_1g079350 38.721 297 154 7 12 305 4 275 5.45e-54 177
MS.gene07556.t1 MTR_3g450990 36.452 310 145 8 12 305 10 283 1.62e-51 171
MS.gene07556.t1 MTR_1g079340 37.621 311 149 11 12 305 43 325 2.30e-43 151
MS.gene07556.t1 MTR_7g096300 38.869 283 120 9 12 285 4 242 1.53e-40 150
MS.gene07556.t1 MTR_1g078470 42.714 199 77 6 109 305 21 184 2.34e-38 134
MS.gene07556.t1 MTR_1g079350 36.607 224 118 8 12 222 4 216 1.05e-29 112
MS.gene07556.t1 MTR_1g079240 37.019 208 90 5 99 305 12 179 5.67e-29 109
MS.gene07556.t1 MTR_7g103380 30.396 227 135 6 14 220 21 244 6.79e-26 104
MS.gene07556.t1 MTR_1g101390 38.462 143 85 2 14 156 30 169 3.17e-24 100
MS.gene07556.t1 MTR_0002s0020 36.242 149 91 2 14 159 24 171 3.01e-22 94.7
MS.gene07556.t1 MTR_4g083970 26.190 252 132 7 56 305 91 290 8.77e-22 93.2
MS.gene07556.t1 MTR_1g076870 37.908 153 69 5 140 285 2 135 9.82e-22 89.4
MS.gene07556.t1 MTR_0113s0040 33.566 143 92 2 14 156 24 163 2.64e-21 92.0
MS.gene07556.t1 MTR_4g102770 36.552 145 86 3 14 156 21 161 1.75e-19 87.0
MS.gene07556.t1 MTR_5g010800 31.544 149 97 3 9 156 14 158 3.26e-19 86.3
MS.gene07556.t1 MTR_7g096310 46.154 104 46 3 78 176 43 141 5.14e-19 82.8
MS.gene07556.t1 MTR_2g042540 42.857 105 56 2 12 115 4 105 9.38e-19 81.3
MS.gene07556.t1 MTR_1g078460 47.191 89 41 2 12 99 67 150 8.59e-17 76.6
MS.gene07556.t1 MTR_1g079210 37.405 131 66 4 141 271 7 121 1.48e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07556.t1 AT2G02230 41.935 310 156 7 12 305 32 333 1.88e-76 237
MS.gene07556.t1 AT2G02250 44.631 298 126 7 12 308 47 306 4.60e-76 235
MS.gene07556.t1 AT2G02360 41.391 302 135 5 5 304 7 268 2.19e-73 227
MS.gene07556.t1 AT2G02240 44.333 300 123 8 12 308 61 319 1.28e-72 227
MS.gene07556.t1 AT2G02340 41.806 299 137 6 11 304 35 301 1.95e-71 223
MS.gene07556.t1 AT1G09155 40.476 294 156 5 15 305 3 280 9.47e-66 208
MS.gene07556.t1 AT1G80110 40.816 294 134 6 12 304 1 255 7.46e-63 199
MS.gene07556.t1 AT1G56240 39.932 293 157 5 15 304 4 280 3.32e-59 191
MS.gene07556.t1 AT1G56250 40.678 295 156 5 15 306 4 282 4.82e-59 191
MS.gene07556.t1 AT2G02320 36.634 303 152 8 8 307 36 301 2.49e-54 179
MS.gene07556.t1 AT2G02350 37.710 297 143 6 12 304 24 282 8.63e-54 177
MS.gene07556.t1 AT2G02310 34.653 303 146 5 12 305 45 304 1.91e-51 172
MS.gene07556.t1 AT2G02300 36.893 309 133 10 5 305 27 281 9.73e-50 167
MS.gene07556.t1 AT5G24560 52.381 147 63 1 10 156 1 140 2.55e-48 160
MS.gene07556.t1 AT5G24560 52.632 57 26 1 249 305 137 192 1.57e-13 68.6
MS.gene07556.t1 AT3G53000 27.152 302 169 8 14 304 23 284 2.51e-27 108
MS.gene07556.t1 AT3G61060 37.762 143 86 2 14 156 27 166 5.70e-25 102
MS.gene07556.t1 AT3G61060 36.364 143 89 1 14 156 27 167 2.52e-24 100
MS.gene07556.t1 AT1G63090 33.125 160 101 3 14 173 28 181 5.66e-19 85.5
MS.gene07556.t1 AT1G12710 32.192 146 95 2 14 159 30 171 2.65e-16 78.2
MS.gene07556.t1 AT5G52120 30.719 153 99 3 12 159 21 171 5.30e-16 77.4
MS.gene07556.t1 AT1G12710 28.249 177 121 4 14 188 30 202 2.53e-12 67.0

Find 89 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAACATGATTTAGTCTT+AGG 0.220760 1.2:-62223503 None:intergenic
GTATTTAAGTCGTGTGCTTT+TGG 0.256893 1.2:+62223113 MS.gene07556:CDS
TTAACATAAAGATCCTTCTT+AGG 0.300044 1.2:-62222088 None:intergenic
TGATGTTGCCAGACTCTCTT+TGG 0.301539 1.2:+62221943 MS.gene07556:CDS
TTGTTCAAGGAATTGAAATA+AGG 0.306864 1.2:+62223480 MS.gene07556:CDS
GTTCCTCGCTCCCGCACTAC+TGG 0.313084 1.2:+62223254 MS.gene07556:CDS
CGAGGAGTTTGTTTATTGTA+TGG 0.313317 1.2:+62222360 MS.gene07556:CDS
ATCAATAATTACCTTGAATC+TGG 0.315150 1.2:-62222419 None:intergenic
CGCTGAATCTGATTCCGTTT+GGG 0.321898 1.2:+62221988 MS.gene07556:CDS
CCGCTGAATCTGATTCCGTT+TGG 0.370563 1.2:+62221987 MS.gene07556:CDS
TTTCAATTGGATAAAGTTGA+TGG 0.371599 1.2:+62222314 MS.gene07556:CDS
CACCCATCTGCTCTCTCCTT+TGG 0.374182 1.2:-62223353 None:intergenic
TATGCTCCGTACAAAGTCTT+TGG 0.387723 1.2:-62223086 None:intergenic
GTGTGTGTTGGTTTGAAATC+CGG 0.388938 1.2:+62223036 MS.gene07556:CDS
TCTTATAGAGAATGGCAAAA+AGG 0.392809 1.2:+62222129 MS.gene07556:CDS
ACTTTCTGTCCTTCCTAAGA+AGG 0.410241 1.2:+62222075 MS.gene07556:CDS
GGGGAGATACTCCGAGGTAT+TGG 0.424153 1.2:+62222381 MS.gene07556:CDS
ACACTTTCTGTCGGTTCGAC+TGG 0.424281 1.2:-62223311 None:intergenic
TGGGTGGTTGGAGATGGAAC+TGG 0.433776 1.2:+62223370 MS.gene07556:CDS
GAAGAAATGCTATATGTTAT+CGG 0.434218 1.2:+62222337 MS.gene07556:CDS
TGTGGAGCGAAATGTATTCT+TGG 0.443243 1.2:+62223196 MS.gene07556:CDS
TGATGAAACCAAAGAGAGTC+TGG 0.447781 1.2:-62221951 None:intergenic
AAGGGTGGTCTTGTTGTTCA+AGG 0.455014 1.2:+62223467 MS.gene07556:CDS
GAGGAGTTTGTTTATTGTAT+GGG 0.456794 1.2:+62222361 MS.gene07556:CDS
GTTGTTGTTATTGAAGAAGA+AGG 0.459058 1.2:+62221857 MS.gene07556:CDS
GGTCAAAGGTGGTGGTTGGA+AGG 0.462655 1.2:+62223448 MS.gene07556:CDS
GAAGCCTCCATTGTCATTGC+TGG 0.463264 1.2:+62223164 MS.gene07556:CDS
GGTTCGACTGGTGCTTCTAC+AGG 0.471350 1.2:-62223299 None:intergenic
TATCCAAAGGAGAGAGCAGA+TGG 0.474521 1.2:+62223350 MS.gene07556:CDS
AATTACCTTGAATCTGGATC+AGG 0.480628 1.2:-62222413 None:intergenic
ATGGCTGATATTCAAATCCA+TGG 0.481354 1.2:-62223139 None:intergenic
GTCAAAGGTGGTGGTTGGAA+GGG 0.482667 1.2:+62223449 MS.gene07556:CDS
GTTGGTTTGAAATCCGGGGC+TGG 0.485855 1.2:+62223042 MS.gene07556:CDS
GGAGAGAGCAGATGGGTGGT+TGG 0.487110 1.2:+62223358 MS.gene07556:CDS
AAAGGTGGTGGTTGGAAGGG+TGG 0.488197 1.2:+62223452 MS.gene07556:CDS
TGTGTGTTGGTTTGAAATCC+GGG 0.488813 1.2:+62223037 MS.gene07556:CDS
AGCAGATGGGTGGTTGGAGA+TGG 0.490784 1.2:+62223364 MS.gene07556:CDS
AAACCGCTTCTTATAGAGAA+TGG 0.492385 1.2:+62222121 MS.gene07556:CDS
GTTTGTGAGGTCAAAGGTGG+TGG 0.499525 1.2:+62223440 MS.gene07556:CDS
GGGTGGTTGGAGATGGAACT+GGG 0.502668 1.2:+62223371 MS.gene07556:CDS
TTATCTCCAAAGACTTTGTA+CGG 0.508567 1.2:+62223080 MS.gene07556:CDS
TGCGGGAGCGAGGAACAATC+TGG 0.517001 1.2:-62223247 None:intergenic
TTCCTCGCTCCCGCACTACT+GGG 0.520429 1.2:+62223255 MS.gene07556:CDS
CTGGGAGAGTTCTTCAATGA+AGG 0.525045 1.2:+62223389 MS.gene07556:CDS
GAATTTCATGATCTACCTGA+AGG 0.533212 1.2:+62221884 MS.gene07556:CDS
CATAAAGATCCTTCTTAGGA+AGG 0.533612 1.2:-62222084 None:intergenic
TTCAATTGGATAAAGTTGAT+GGG 0.536587 1.2:+62222315 MS.gene07556:CDS
GTGAGGTCAAAGGTGGTGGT+TGG 0.539242 1.2:+62223444 MS.gene07556:CDS
CTTACGAGTTCAGCCGCCTC+AGG 0.539986 1.2:-62223014 None:intergenic
GAGATACTCCGAGGTATTGG+AGG 0.542088 1.2:+62222384 MS.gene07556:CDS
GATGATAAGCAGGTGGACAT+AGG 0.544574 1.2:+62223416 MS.gene07556:CDS
AGTGAATATCCCAGTAGTGC+GGG 0.551157 1.2:-62223264 None:intergenic
AGGAGTTTGTTTATTGTATG+GGG 0.552502 1.2:+62222362 MS.gene07556:CDS
ATACTCCGAGGTATTGGAGG+TGG 0.553518 1.2:+62222387 MS.gene07556:CDS
TTGCCATTCTCTATAAGAAG+CGG 0.557636 1.2:-62222124 None:intergenic
CTGAACTCGTAAGTGTGTGT+TGG 0.561507 1.2:+62223024 MS.gene07556:CDS
GGATTCCTGATCCAGATTCA+AGG 0.561889 1.2:+62222408 MS.gene07556:CDS
GTATTCTTGGATGCGGAAAG+AGG 0.564554 1.2:+62223209 MS.gene07556:CDS
TGAAGGAGGAGATGATAAGC+AGG 0.574291 1.2:+62223406 MS.gene07556:CDS
ATCCCAGTAGTGCGGGAGCG+AGG 0.588103 1.2:-62223257 None:intergenic
GCGAAATGTATTCTTGGATG+CGG 0.589696 1.2:+62223202 MS.gene07556:CDS
AAAATGCAGGTTTCCTGAGG+CGG 0.600110 1.2:+62223001 MS.gene07556:intron
ATAGGTGTTTGTGAGGTCAA+AGG 0.607193 1.2:+62223434 MS.gene07556:CDS
TGATAGTGTTGATCCAGCCC+CGG 0.609203 1.2:-62223055 None:intergenic
TGGCTGATATTCAAATCCAT+GGG 0.614295 1.2:-62223138 None:intergenic
ATCACATCCAGCAATGACAA+TGG 0.615960 1.2:-62223171 None:intergenic
GATTATCTCTAAATCTGATG+CGG 0.618260 1.2:+62222039 MS.gene07556:CDS
AGATCGTCTACACTTTCTGT+CGG 0.618327 1.2:-62223320 None:intergenic
GGAGAGTTCTTCAATGAAGG+AGG 0.620684 1.2:+62223392 MS.gene07556:CDS
AAGCACACGACTTAAATACA+AGG 0.633044 1.2:-62223109 None:intergenic
ATGACAATGGAGGCTTCACA+TGG 0.637596 1.2:-62223158 None:intergenic
GAGAGTCTGGCAACATCACG+TGG 0.638064 1.2:-62221938 None:intergenic
ATAATCGAGTGATAATCAGA+AGG 0.641855 1.2:-62222022 None:intergenic
CGATCTGCAGAAGTATCCAA+AGG 0.652956 1.2:+62223337 MS.gene07556:CDS
GAGTGAATATCCCAGTAGTG+CGG 0.658404 1.2:-62223265 None:intergenic
ATCCAAAGGAGAGAGCAGAT+GGG 0.659963 1.2:+62223351 MS.gene07556:CDS
GGAATCCACCTCCAATACCT+CGG 0.660263 1.2:-62222392 None:intergenic
CATTGCTGGATGTGATACTG+TGG 0.663858 1.2:+62223178 MS.gene07556:CDS
GTGTGTTGGTTTGAAATCCG+GGG 0.665551 1.2:+62223038 MS.gene07556:CDS
CCAAACGGAATCAGATTCAG+CGG 0.667320 1.2:-62221987 None:intergenic
GGTGGACATAGGTGTTTGTG+AGG 0.667925 1.2:+62223427 MS.gene07556:CDS
CAAAGGAGAGAGCAGATGGG+TGG 0.672349 1.2:+62223354 MS.gene07556:CDS
ACATCCAGCAATGACAATGG+AGG 0.677528 1.2:-62223168 None:intergenic
AGGAGGAGATGATAAGCAGG+TGG 0.681884 1.2:+62223409 MS.gene07556:CDS
AACGGAATCAGATTCAGCGG+CGG 0.691393 1.2:-62221984 None:intergenic
GGTGTTTGTGAGGTCAAAGG+TGG 0.696595 1.2:+62223437 MS.gene07556:CDS
AATGCTATATGTTATCGGCG+AGG 0.704244 1.2:+62222342 MS.gene07556:CDS
TTGTATGGGGAGATACTCCG+AGG 0.719053 1.2:+62222375 MS.gene07556:CDS
TGGATGCGGAAAGAGGACGA+AGG 0.783182 1.2:+62223216 MS.gene07556:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTATAAACATTTAATTA+AGG + chr1.2:62222838-62222857 MS.gene07556:intron 10.0%
!! CATATTATATTAAATTATGT+AGG + chr1.2:62222557-62222576 MS.gene07556:intron 10.0%
!! CAAAAAAAACAAAAACAAAT+TGG - chr1.2:62222168-62222187 None:intergenic 15.0%
!!! CTGTTAATTTATATTTTTCT+TGG + chr1.2:62222254-62222273 MS.gene07556:intron 15.0%
!!! TGATTTATTTTTGAAATTGT+AGG + chr1.2:62222438-62222457 MS.gene07556:intron 15.0%
!! AAAAAACAAAAACAAATTGG+AGG - chr1.2:62222165-62222184 None:intergenic 20.0%
!! TAATAAAGAACTAATAAGCA+TGG - chr1.2:62222872-62222891 None:intergenic 20.0%
!!! ATTAGTTCTTTATTATAGTC+AGG + chr1.2:62222877-62222896 MS.gene07556:intron 20.0%
!!! ATTTTTGAAATTGTAGGTAT+TGG + chr1.2:62222444-62222463 MS.gene07556:intron 20.0%
! ATCAATAATTACCTTGAATC+TGG - chr1.2:62222422-62222441 None:intergenic 25.0%
! GAAGAAATGCTATATGTTAT+CGG + chr1.2:62222337-62222356 MS.gene07556:CDS 25.0%
! TTAACATAAAGATCCTTCTT+AGG - chr1.2:62222091-62222110 None:intergenic 25.0%
! TTGTTCAAGGAATTGAAATA+AGG + chr1.2:62223480-62223499 MS.gene07556:CDS 25.0%
! TTTCAATTGGATAAAGTTGA+TGG + chr1.2:62222314-62222333 MS.gene07556:CDS 25.0%
!! TATTTTTCTTGGCTAATTAG+TGG + chr1.2:62222265-62222284 MS.gene07556:intron 25.0%
!! TTCAATTGGATAAAGTTGAT+GGG + chr1.2:62222315-62222334 MS.gene07556:CDS 25.0%
!!! TTGTAGGTATTGGTTAATTT+TGG + chr1.2:62222454-62222473 MS.gene07556:intron 25.0%
AACAAAAACAAATTGGAGGT+AGG - chr1.2:62222161-62222180 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG - chr1.2:62222715-62222734 None:intergenic 30.0%
ACTGGTCAATTTAATGACTA+AGG - chr1.2:62222955-62222974 None:intergenic 30.0%
AGGCAAAAATTTATCCCAAA+CGG - chr1.2:62222005-62222024 None:intergenic 30.0%
ATAAGCTGAAAACAGCTTAT+GGG - chr1.2:62222714-62222733 None:intergenic 30.0%
ATAATCGAGTGATAATCAGA+AGG - chr1.2:62222025-62222044 None:intergenic 30.0%
GATTATCTCTAAATCTGATG+CGG + chr1.2:62222039-62222058 MS.gene07556:CDS 30.0%
TCTTATAGAGAATGGCAAAA+AGG + chr1.2:62222129-62222148 MS.gene07556:CDS 30.0%
TTATCTCCAAAGACTTTGTA+CGG + chr1.2:62223080-62223099 MS.gene07556:CDS 30.0%
! AGGAGTTTGTTTATTGTATG+GGG + chr1.2:62222362-62222381 MS.gene07556:CDS 30.0%
! CTTAGATTTTGTTCAATCAC+TGG - chr1.2:62222973-62222992 None:intergenic 30.0%
! GAGGAGTTTGTTTATTGTAT+GGG + chr1.2:62222361-62222380 MS.gene07556:CDS 30.0%
! GTGGAATTAGAGTTTTCAAT+TGG + chr1.2:62222301-62222320 MS.gene07556:intron 30.0%
! GTTGTTGTTATTGAAGAAGA+AGG + chr1.2:62221857-62221876 MS.gene07556:CDS 30.0%
!! AGCTGTTTTCATAAGTTACA+TGG - chr1.2:62222750-62222769 None:intergenic 30.0%
!!! GTTTTTTTTGTTGTGAGTCT+CGG + chr1.2:62222178-62222197 MS.gene07556:intron 30.0%
!!! TTTTTTTTGTTGTGAGTCTC+GGG + chr1.2:62222179-62222198 MS.gene07556:intron 30.0%
AAACCGCTTCTTATAGAGAA+TGG + chr1.2:62222121-62222140 MS.gene07556:CDS 35.0%
AAGCACACGACTTAAATACA+AGG - chr1.2:62223112-62223131 None:intergenic 35.0%
AATTACCTTGAATCTGGATC+AGG - chr1.2:62222416-62222435 None:intergenic 35.0%
ATGGCTGATATTCAAATCCA+TGG - chr1.2:62223142-62223161 None:intergenic 35.0%
CATAAAGATCCTTCTTAGGA+AGG - chr1.2:62222087-62222106 None:intergenic 35.0%
CTAAGCGATTCAAAAAATGC+AGG + chr1.2:62222988-62223007 MS.gene07556:intron 35.0%
GAATTTCATGATCTACCTGA+AGG + chr1.2:62221884-62221903 MS.gene07556:CDS 35.0%
TGGCTGATATTCAAATCCAT+GGG - chr1.2:62223141-62223160 None:intergenic 35.0%
TTCATGCATGTTTGCATGTT+TGG + chr1.2:62222612-62222631 MS.gene07556:intron 35.0%
TTGCCATTCTCTATAAGAAG+CGG - chr1.2:62222127-62222146 None:intergenic 35.0%
! CGAGGAGTTTGTTTATTGTA+TGG + chr1.2:62222360-62222379 MS.gene07556:CDS 35.0%
! GTATTTAAGTCGTGTGCTTT+TGG + chr1.2:62223113-62223132 MS.gene07556:CDS 35.0%
!! TAGTGGTTTGTTGTGTTATG+TGG + chr1.2:62222282-62222301 MS.gene07556:intron 35.0%
AATGCTATATGTTATCGGCG+AGG + chr1.2:62222342-62222361 MS.gene07556:CDS 40.0%
ACTTTCTGTCCTTCCTAAGA+AGG + chr1.2:62222075-62222094 MS.gene07556:CDS 40.0%
AGACTAAACACCACTTTCAC+CGG - chr1.2:62222215-62222234 None:intergenic 40.0%
AGATCGTCTACACTTTCTGT+CGG - chr1.2:62223323-62223342 None:intergenic 40.0%
ATAGGTGTTTGTGAGGTCAA+AGG + chr1.2:62223434-62223453 MS.gene07556:CDS 40.0%
ATCACATCCAGCAATGACAA+TGG - chr1.2:62223174-62223193 None:intergenic 40.0%
CAAAAAATGCAGGTTTCCTG+AGG + chr1.2:62222998-62223017 MS.gene07556:intron 40.0%
GCGAAATGTATTCTTGGATG+CGG + chr1.2:62223202-62223221 MS.gene07556:CDS 40.0%
TATGCTCCGTACAAAGTCTT+TGG - chr1.2:62223089-62223108 None:intergenic 40.0%
TCCTTGAAGACTAATGCGTT+TGG + chr1.2:62222906-62222925 MS.gene07556:intron 40.0%
TGATGAAACCAAAGAGAGTC+TGG - chr1.2:62221954-62221973 None:intergenic 40.0%
TGTGGAGCGAAATGTATTCT+TGG + chr1.2:62223196-62223215 MS.gene07556:CDS 40.0%
! ACGTTTTCAATGCAACCTTC+AGG - chr1.2:62221902-62221921 None:intergenic 40.0%
!! ACCAAACGCATTAGTCTTCA+AGG - chr1.2:62222910-62222929 None:intergenic 40.0%
!! GTGTGTGTTGGTTTGAAATC+CGG + chr1.2:62223036-62223055 MS.gene07556:CDS 40.0%
!! TGTGTGTTGGTTTGAAATCC+GGG + chr1.2:62223037-62223056 MS.gene07556:CDS 40.0%
AAAATGCAGGTTTCCTGAGG+CGG + chr1.2:62223001-62223020 MS.gene07556:intron 45.0%
ACATCCAGCAATGACAATGG+AGG - chr1.2:62223171-62223190 None:intergenic 45.0%
ACTAAACACCACTTTCACCG+GGG - chr1.2:62222213-62222232 None:intergenic 45.0%
AGTGAATATCCCAGTAGTGC+GGG - chr1.2:62223267-62223286 None:intergenic 45.0%
ATCCAAAGGAGAGAGCAGAT+GGG + chr1.2:62223351-62223370 MS.gene07556:CDS 45.0%
ATGACAATGGAGGCTTCACA+TGG - chr1.2:62223161-62223180 None:intergenic 45.0%
CATTGCTGGATGTGATACTG+TGG + chr1.2:62223178-62223197 MS.gene07556:CDS 45.0%
CCAAACGGAATCAGATTCAG+CGG - chr1.2:62221990-62222009 None:intergenic 45.0%
CGCTGAATCTGATTCCGTTT+GGG + chr1.2:62221988-62222007 MS.gene07556:CDS 45.0%
CTCGACGAGTATTTGTGAGA+CGG + chr1.2:62222651-62222670 MS.gene07556:intron 45.0%
CTGAACTCGTAAGTGTGTGT+TGG + chr1.2:62223024-62223043 MS.gene07556:CDS 45.0%
CTGGGAGAGTTCTTCAATGA+AGG + chr1.2:62223389-62223408 MS.gene07556:CDS 45.0%
GACTAAACACCACTTTCACC+GGG - chr1.2:62222214-62222233 None:intergenic 45.0%
GAGTATTTGTGAGACGGTGT+AGG + chr1.2:62222657-62222676 MS.gene07556:intron 45.0%
GAGTGAATATCCCAGTAGTG+CGG - chr1.2:62223268-62223287 None:intergenic 45.0%
GATGATAAGCAGGTGGACAT+AGG + chr1.2:62223416-62223435 MS.gene07556:CDS 45.0%
GGAGAGTTCTTCAATGAAGG+AGG + chr1.2:62223392-62223411 MS.gene07556:CDS 45.0%
GGATTCCTGATCCAGATTCA+AGG + chr1.2:62222408-62222427 MS.gene07556:CDS 45.0%
GTATTCTTGGATGCGGAAAG+AGG + chr1.2:62223209-62223228 MS.gene07556:CDS 45.0%
TATCCAAAGGAGAGAGCAGA+TGG + chr1.2:62223350-62223369 MS.gene07556:CDS 45.0%
TGAAGGAGGAGATGATAAGC+AGG + chr1.2:62223406-62223425 MS.gene07556:CDS 45.0%
TGATGTTGCCAGACTCTCTT+TGG + chr1.2:62221943-62221962 MS.gene07556:CDS 45.0%
!! AAGGGTGGTCTTGTTGTTCA+AGG + chr1.2:62223467-62223486 MS.gene07556:CDS 45.0%
!! CGATCTGCAGAAGTATCCAA+AGG + chr1.2:62223337-62223356 MS.gene07556:CDS 45.0%
!! GTGTGTTGGTTTGAAATCCG+GGG + chr1.2:62223038-62223057 MS.gene07556:CDS 45.0%
AACGGAATCAGATTCAGCGG+CGG - chr1.2:62221987-62222006 None:intergenic 50.0%
AGGAGGAGATGATAAGCAGG+TGG + chr1.2:62223409-62223428 MS.gene07556:CDS 50.0%
CCGCTGAATCTGATTCCGTT+TGG + chr1.2:62221987-62222006 MS.gene07556:CDS 50.0%
CTAAACACCACTTTCACCGG+GGG - chr1.2:62222212-62222231 None:intergenic 50.0%
GAAGCCTCCATTGTCATTGC+TGG + chr1.2:62223164-62223183 MS.gene07556:CDS 50.0%
GGAATCCACCTCCAATACCT+CGG - chr1.2:62222395-62222414 None:intergenic 50.0%
GGTGGACATAGGTGTTTGTG+AGG + chr1.2:62223427-62223446 MS.gene07556:CDS 50.0%
GGTGTTTGTGAGGTCAAAGG+TGG + chr1.2:62223437-62223456 MS.gene07556:CDS 50.0%
GTTTGTGAGGTCAAAGGTGG+TGG + chr1.2:62223440-62223459 MS.gene07556:CDS 50.0%
TTGTATGGGGAGATACTCCG+AGG + chr1.2:62222375-62222394 MS.gene07556:CDS 50.0%
TTTGAATCCCCCGGTGAAAG+TGG + chr1.2:62222202-62222221 MS.gene07556:intron 50.0%
! GTCAAAGGTGGTGGTTGGAA+GGG + chr1.2:62223449-62223468 MS.gene07556:CDS 50.0%
! TCGTGTGCTTTTGGATCCCA+TGG + chr1.2:62223122-62223141 MS.gene07556:CDS 50.0%
!! ACACTTTCTGTCGGTTCGAC+TGG - chr1.2:62223314-62223333 None:intergenic 50.0%
!! ATACTCCGAGGTATTGGAGG+TGG + chr1.2:62222387-62222406 MS.gene07556:CDS 50.0%
!! GAGATACTCCGAGGTATTGG+AGG + chr1.2:62222384-62222403 MS.gene07556:CDS 50.0%
!! TGATAGTGTTGATCCAGCCC+CGG - chr1.2:62223058-62223077 None:intergenic 50.0%
AGCAGATGGGTGGTTGGAGA+TGG + chr1.2:62223364-62223383 MS.gene07556:CDS 55.0%
AGTCTCGGGTTTGAATCCCC+CGG + chr1.2:62222193-62222212 MS.gene07556:intron 55.0%
CAAAGGAGAGAGCAGATGGG+TGG + chr1.2:62223354-62223373 MS.gene07556:CDS 55.0%
CACCCATCTGCTCTCTCCTT+TGG - chr1.2:62223356-62223375 None:intergenic 55.0%
GAGAGTCTGGCAACATCACG+TGG - chr1.2:62221941-62221960 None:intergenic 55.0%
GGGGAGATACTCCGAGGTAT+TGG + chr1.2:62222381-62222400 MS.gene07556:CDS 55.0%
GGGTGGTTGGAGATGGAACT+GGG + chr1.2:62223371-62223390 MS.gene07556:CDS 55.0%
GGTTCGACTGGTGCTTCTAC+AGG - chr1.2:62223302-62223321 None:intergenic 55.0%
TGGATGCGGAAAGAGGACGA+AGG + chr1.2:62223216-62223235 MS.gene07556:CDS 55.0%
TGGGTGGTTGGAGATGGAAC+TGG + chr1.2:62223370-62223389 MS.gene07556:CDS 55.0%
! AAAGGTGGTGGTTGGAAGGG+TGG + chr1.2:62223452-62223471 MS.gene07556:CDS 55.0%
! GGTCAAAGGTGGTGGTTGGA+AGG + chr1.2:62223448-62223467 MS.gene07556:CDS 55.0%
! GTGAGGTCAAAGGTGGTGGT+TGG + chr1.2:62223444-62223463 MS.gene07556:CDS 55.0%
!! GTTGGTTTGAAATCCGGGGC+TGG + chr1.2:62223042-62223061 MS.gene07556:CDS 55.0%
CTTACGAGTTCAGCCGCCTC+AGG - chr1.2:62223017-62223036 None:intergenic 60.0%
GGAGAGAGCAGATGGGTGGT+TGG + chr1.2:62223358-62223377 MS.gene07556:CDS 60.0%
TGCGGGAGCGAGGAACAATC+TGG - chr1.2:62223250-62223269 None:intergenic 60.0%
TTCCTCGCTCCCGCACTACT+GGG + chr1.2:62223255-62223274 MS.gene07556:CDS 60.0%
ATCCCAGTAGTGCGGGAGCG+AGG - chr1.2:62223260-62223279 None:intergenic 65.0%
GTTCCTCGCTCCCGCACTAC+TGG + chr1.2:62223254-62223273 MS.gene07556:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 62221854 62223523 62221854 ID=MS.gene07556
chr1.2 mRNA 62221854 62223523 62221854 ID=MS.gene07556.t1;Parent=MS.gene07556
chr1.2 exon 62221854 62222150 62221854 ID=MS.gene07556.t1.exon1;Parent=MS.gene07556.t1
chr1.2 CDS 62221854 62222150 62221854 ID=cds.MS.gene07556.t1;Parent=MS.gene07556.t1
chr1.2 exon 62222311 62222429 62222311 ID=MS.gene07556.t1.exon2;Parent=MS.gene07556.t1
chr1.2 CDS 62222311 62222429 62222311 ID=cds.MS.gene07556.t1;Parent=MS.gene07556.t1
chr1.2 exon 62223010 62223523 62223010 ID=MS.gene07556.t1.exon3;Parent=MS.gene07556.t1
chr1.2 CDS 62223010 62223523 62223010 ID=cds.MS.gene07556.t1;Parent=MS.gene07556.t1
Gene Sequence

>MS.gene07556

ATGGTTGTTGTTATTGAAGAAGAAGGTATTGAATTTCATGATCTACCTGAAGGTTGCATTGAAAACGTTCTTTCTTTCACAACACCACGTGATGTTGCCAGACTCTCTTTGGTTTCATCAACTTTCAAATCCGCCGCTGAATCTGATTCCGTTTGGGATAAATTTTTGCCTTCTGATTATCACTCGATTATCTCTAAATCTGATGCGGAAATTGATAATTCACTTTCTGTCCTTCCTAAGAAGGATCTTTATGTTAATCTCACTCAGAAACCGCTTCTTATAGAGAATGGCAAAAAGGTAATTTCCTACCTCCAATTTGTTTTTGTTTTTTTTGTTGTGAGTCTCGGGTTTGAATCCCCCGGTGAAAGTGGTGTTTAGTCTAACAATATCGACATTGTTACTGTTAATTTATATTTTTCTTGGCTAATTAGTGGTTTGTTGTGTTATGTGGAATTAGAGTTTTCAATTGGATAAAGTTGATGGGAAGAAATGCTATATGTTATCGGCGAGGAGTTTGTTTATTGTATGGGGAGATACTCCGAGGTATTGGAGGTGGATTCCTGATCCAGATTCAAGGTAATTATTGATTTATTTTTGAAATTGTAGGTATTGGTTAATTTTGGTTGTTAAATTAATGAAATTATGATATGATTTATGAAATTTAAAATATTAGATTATATTAATCGTTTTTCATGTATTAGATCATATTATATTAAATTATGTAGGATCAATTTAGTTTTAAAATTTTTTTCATATACTTCATGCATGTTTGCATGTTTGGATTGACTTATTACTCTCTCGACGAGTATTTGTGAGACGGTGTAGGATAGCTTATAATTTTTTTAATGATATATATGCCCATAAGCTGTTTTCAGCTTATTTTCATAAGTTTTCCATGTAACTTATGAAAACAGCTTATAGCTTAAGTGAAAATTGTTTGATTTTATTTTATATTTTGTTCACACATAAGCATATATGTTTATCATACTATAAACATTTAATTAAGGTGTTTGATCCATGCTTATTAGTTCTTTATTATAGTCAGGAAATTGTCCTTGAAGACTAATGCGTTTGGTGATTTTATTCTAGAGATTATTTCCTTAGTCATTAAATTGACCAGTGATTGAACAAAATCTAAGCGATTCAAAAAATGCAGGTTTCCTGAGGCGGCTGAACTCGTAAGTGTGTGTTGGTTTGAAATCCGGGGCTGGATCAACACTATCATGTTATCTCCAAAGACTTTGTACGGAGCATACCTTGTATTTAAGTCGTGTGCTTTTGGATCCCATGGATTTGAATATCAGCCATGTGAAGCCTCCATTGTCATTGCTGGATGTGATACTGTGGAGCGAAATGTATTCTTGGATGCGGAAAGAGGACGAAGGCTAAGATACCAGATTGTTCCTCGCTCCCGCACTACTGGGATATTCACTCGATTTCGATCTCCTGTAGAAGCACCAGTCGAACCGACAGAAAGTGTAGACGATCTGCAGAAGTATCCAAAGGAGAGAGCAGATGGGTGGTTGGAGATGGAACTGGGAGAGTTCTTCAATGAAGGAGGAGATGATAAGCAGGTGGACATAGGTGTTTGTGAGGTCAAAGGTGGTGGTTGGAAGGGTGGTCTTGTTGTTCAAGGAATTGAAATAAGGCCTAAGACTAAATCATGTTGA
Protein sequence

>MS.gene07556.t1

MVVVIEEEGIEFHDLPEGCIENVLSFTTPRDVARLSLVSSTFKSAAESDSVWDKFLPSDYHSIISKSDAEIDNSLSVLPKKDLYVNLTQKPLLIENGKKSFQLDKVDGKKCYMLSARSLFIVWGDTPRYWRWIPDPDSRFPEAAELVSVCWFEIRGWINTIMLSPKTLYGAYLVFKSCAFGSHGFEYQPCEASIVIAGCDTVERNVFLDAERGRRLRYQIVPRSRTTGIFTRFRSPVEAPVEPTESVDDLQKYPKERADGWLEMELGEFFNEGGDDKQVDIGVCEVKGGGWKGGLVVQGIEIRPKTKSC