AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005032

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005032.t1 MTR_1g079400 89.831 295 15 1 1 295 1 280 0.0 511
MS.gene005032.t1 MTR_1g079410 76.125 289 52 2 6 294 2 273 5.86e-160 446
MS.gene005032.t1 MTR_1g079260 54.138 290 103 4 13 294 5 272 9.78e-102 299
MS.gene005032.t1 MTR_1g079370 54.225 284 107 3 12 294 4 265 4.18e-98 289
MS.gene005032.t1 MTR_1g100597 52.921 291 105 4 13 294 5 272 4.79e-96 284
MS.gene005032.t1 MTR_1g079460 53.169 284 113 3 11 294 3 266 5.12e-93 276
MS.gene005032.t1 MTR_1g079380 53.521 284 109 3 12 294 4 265 1.13e-90 271
MS.gene005032.t1 MTR_1g079200 51.568 287 107 5 13 294 5 264 1.23e-87 263
MS.gene005032.t1 MTR_1g079180 52.797 286 106 6 13 294 5 265 7.10e-87 261
MS.gene005032.t1 MTR_1g079230 49.653 288 116 4 15 294 7 273 2.61e-84 254
MS.gene005032.t1 MTR_1g100613 50.000 262 97 4 28 277 5 244 7.50e-79 239
MS.gene005032.t1 MTR_3g452600 47.887 284 123 5 11 294 9 267 5.84e-78 238
MS.gene005032.t1 MTR_1g079850 46.441 295 127 4 13 294 5 281 4.68e-76 234
MS.gene005032.t1 MTR_1g079140 44.013 309 148 4 5 295 6 307 1.15e-74 231
MS.gene005032.t1 MTR_1g026510 44.631 298 132 6 12 294 4 283 6.48e-74 229
MS.gene005032.t1 MTR_2g079100 46.207 290 123 4 5 291 2 261 4.11e-72 223
MS.gene005032.t1 MTR_1g079250 45.946 296 126 6 12 294 4 278 8.42e-72 223
MS.gene005032.t1 MTR_3g006850 43.202 331 125 9 5 294 7 315 2.99e-70 220
MS.gene005032.t1 MTR_3g450990 44.371 302 123 7 11 294 9 283 1.09e-68 215
MS.gene005032.t1 MTR_7g112550 41.343 283 156 8 15 295 10 284 3.40e-61 196
MS.gene005032.t1 MTR_1g083580 36.486 296 153 6 12 294 8 281 3.96e-61 196
MS.gene005032.t1 MTR_1g079350 41.438 292 140 7 13 294 5 275 3.33e-59 190
MS.gene005032.t1 MTR_1g079340 44.218 294 136 8 15 294 46 325 4.53e-58 189
MS.gene005032.t1 MTR_7g096300 44.928 276 114 9 11 279 3 247 4.71e-54 187
MS.gene005032.t1 MTR_7g112560 36.491 285 153 5 12 295 1 258 1.65e-53 175
MS.gene005032.t1 MTR_1g078470 50.549 182 68 4 113 294 25 184 4.32e-45 151
MS.gene005032.t1 MTR_4g023570 34.507 284 138 6 12 294 1 237 4.48e-44 150
MS.gene005032.t1 MTR_1g079240 43.367 196 83 4 99 294 12 179 8.00e-39 135
MS.gene005032.t1 MTR_1g079130 40.104 192 102 5 113 294 1 189 1.27e-35 127
MS.gene005032.t1 MTR_1g076870 46.667 135 71 1 140 274 2 135 6.41e-29 108
MS.gene005032.t1 MTR_1g079350 41.139 158 81 4 12 164 4 154 4.88e-26 102
MS.gene005032.t1 MTR_2g042540 47.573 103 52 1 13 115 5 105 1.24e-22 91.3
MS.gene005032.t1 MTR_7g096310 44.167 120 59 3 79 194 44 159 5.95e-22 90.5
MS.gene005032.t1 MTR_1g078460 55.172 87 35 1 13 99 68 150 2.94e-21 88.2
MS.gene005032.t1 MTR_7g103380 26.056 284 183 8 15 293 22 283 4.98e-21 90.9
MS.gene005032.t1 MTR_1g079210 42.143 140 50 3 142 268 8 129 9.89e-20 83.6
MS.gene005032.t1 MTR_3g058640 40.336 119 52 2 140 258 7 106 2.91e-16 73.6
MS.gene005032.t1 MTR_4g102770 32.639 144 95 2 15 158 22 163 4.80e-15 74.3
MS.gene005032.t1 MTR_1g101390 32.639 144 94 2 15 158 31 171 6.03e-15 73.9
MS.gene005032.t1 MTR_0002s0020 30.405 148 99 2 15 159 25 171 6.76e-15 73.9
MS.gene005032.t1 MTR_0113s0040 27.811 169 117 3 9 177 19 182 4.46e-14 71.2
MS.gene005032.t1 MTR_5g010800 28.082 146 100 3 15 159 20 161 1.89e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005032.t1 AT2G02360 41.844 282 131 6 15 293 17 268 1.77e-69 217
MS.gene005032.t1 AT2G02230 36.364 308 163 7 13 294 33 333 4.41e-63 202
MS.gene005032.t1 AT2G02250 38.542 288 148 6 8 293 43 303 3.98e-62 199
MS.gene005032.t1 AT2G02340 40.702 285 145 5 15 295 39 303 1.59e-61 197
MS.gene005032.t1 AT2G02240 38.328 287 149 7 8 293 57 316 9.59e-60 193
MS.gene005032.t1 AT1G80110 39.286 280 141 5 15 293 4 255 3.22e-57 185
MS.gene005032.t1 AT2G02350 36.860 293 144 7 10 293 22 282 2.89e-52 173
MS.gene005032.t1 AT1G09155 37.241 290 162 6 14 294 2 280 2.01e-50 168
MS.gene005032.t1 AT1G56250 38.488 291 159 6 14 295 3 282 5.52e-50 167
MS.gene005032.t1 AT1G56240 38.754 289 157 7 14 293 3 280 4.77e-48 162
MS.gene005032.t1 AT2G02310 34.021 291 163 5 8 295 41 305 8.73e-47 159
MS.gene005032.t1 AT2G02320 33.569 283 157 6 15 293 43 298 6.08e-43 149
MS.gene005032.t1 AT5G24560 38.756 209 107 4 15 222 6 194 7.53e-41 140
MS.gene005032.t1 AT2G02300 35.052 291 134 9 15 295 37 282 5.37e-40 141
MS.gene005032.t1 AT2G02350 32.632 190 94 6 113 293 1 165 5.84e-21 88.2
MS.gene005032.t1 AT3G53000 26.316 285 180 9 15 293 24 284 2.02e-20 89.4
MS.gene005032.t1 AT3G61060 30.986 142 95 2 15 156 28 166 3.54e-14 71.6
MS.gene005032.t1 AT5G52120 30.921 152 100 2 12 159 21 171 5.15e-14 71.2
MS.gene005032.t1 AT1G63090 32.414 145 94 2 15 159 29 169 2.38e-13 69.3
MS.gene005032.t1 AT3G61060 29.577 142 98 1 15 156 28 167 4.02e-13 68.9
MS.gene005032.t1 AT1G12710 30.345 145 97 2 15 159 31 171 5.90e-13 68.2

Find 63 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTCTCTATCATCATATTC+TGG 0.177035 1.3:+56443403 None:intergenic
CATTTATACGCATAGTTATT+TGG 0.210406 1.3:+56443488 None:intergenic
CAAATAACTATGCGTATAAA+TGG 0.243746 1.3:-56443487 MS.gene005032:CDS
ATGGGAGAATTCTTTAATTC+AGG 0.258142 1.3:-56443316 MS.gene005032:CDS
TCTCAACAACTTCATCTTCT+AGG 0.271024 1.3:+56443293 None:intergenic
CATAATAGACAATGGTAAAA+AGG 0.288236 1.3:-56444067 MS.gene005032:intron
TTACCATTGTCTATTATGAT+AGG 0.311639 1.3:+56444072 None:intergenic
GGGTGACACTCCTCAATATT+GGG 0.314388 1.3:-56443817 MS.gene005032:CDS
CAAGTAACTGTTGGTGTACT+TGG 0.315902 1.3:-56443460 MS.gene005032:CDS
TAGAGATATCTCCATTGCTT+TGG 0.330371 1.3:-56443838 MS.gene005032:CDS
CCGCTAAATCAGATACTGTT+TGG 0.340386 1.3:-56444209 MS.gene005032:CDS
AGTGATATATAGAGACTTCT+TGG 0.347188 1.3:+56444107 None:intergenic
TAAAATTCAGAGCTTTCAAT+TGG 0.366503 1.3:-56443898 MS.gene005032:intron
TGGGTGACACTCCTCAATAT+TGG 0.371925 1.3:-56443818 MS.gene005032:CDS
AGAGATATCTCCATTGCTTT+GGG 0.391567 1.3:-56443837 MS.gene005032:CDS
CGCTAAATCAGATACTGTTT+GGG 0.401376 1.3:-56444208 MS.gene005032:CDS
AAATGTGGTTTCATTCTTGA+AGG 0.403833 1.3:-56443238 MS.gene005032:CDS
TTCAAGATGATCAATGCCTT+TGG 0.405685 1.3:-56443556 MS.gene005032:CDS
GTTCTCTATCATCATATTCT+GGG 0.423782 1.3:+56443404 None:intergenic
CTAGGCTTCGTATAGTGTGC+TGG 0.425024 1.3:-56443648 MS.gene005032:CDS
AGCTGCATATTGAGTATTTG+AGG 0.429923 1.3:+56443588 None:intergenic
GAGTTAACTGTGGGTGTACT+TGG 0.452070 1.3:-56443514 MS.gene005032:CDS
TTAGGATCTGACCTGGAGTC+TGG 0.458584 1.3:+56443780 None:intergenic
GAACGAGATGACGAGTTTCA+AGG 0.463915 1.3:-56443385 MS.gene005032:CDS
TAGGCTCTCACTTGTTTGCA+AGG 0.484029 1.3:-56444244 MS.gene005032:CDS
GAGAGCCTACATGAATCAAC+TGG 0.485941 1.3:+56444258 None:intergenic
GTGTGCTGGTTTGCATTTGA+AGG 0.491002 1.3:-56443634 MS.gene005032:CDS
CCAAACAGTATCTGATTTAG+CGG 0.494554 1.3:+56444209 None:intergenic
AGTTGTATGCGACAATATCT+TGG 0.496653 1.3:+56444281 None:intergenic
CAAACAAAGAGGAAGCAGAC+TGG 0.504530 1.3:+56444142 None:intergenic
ATGATTGAGATCAAATCAGA+TGG 0.512192 1.3:+56444174 None:intergenic
GACCTGGAGTCTGGTAGGAT+TGG 0.514805 1.3:+56443789 None:intergenic
TAGAGACTTCTTGGAGGGAG+AGG 0.515847 1.3:+56444116 None:intergenic
CCAGATTCAGAGAAGTTGCT+AGG 0.515868 1.3:-56443666 MS.gene005032:intron
ACACTCCTCAATATTGGGAT+TGG 0.518790 1.3:-56443812 MS.gene005032:CDS
AGGCTCTCACTTGTTTGCAA+GGG 0.530749 1.3:-56444243 MS.gene005032:CDS
AAACAAAGAGGAAGCAGACT+GGG 0.536095 1.3:+56444143 None:intergenic
GGCCAATCCTACCAGACTCC+AGG 0.549409 1.3:-56443791 MS.gene005032:intron
ATGGATATGAAAACCGAAGA+AGG 0.550332 1.3:-56444342 MS.gene005032:CDS
CATTGTCTATTATGATAGGA+TGG 0.555364 1.3:+56444076 None:intergenic
ATCTTGGCAATGCATCCCTC+CGG 0.558404 1.3:+56444297 None:intergenic
GATATATAGAGACTTCTTGG+AGG 0.564443 1.3:+56444110 None:intergenic
AGGAGTGTCACCCAAAGCAA+TGG 0.570589 1.3:+56443827 None:intergenic
AGGAATTTCATCAAAACCAA+AGG 0.577378 1.3:+56443540 None:intergenic
ATTGGCCAATCCCAATATTG+AGG 0.587150 1.3:+56443807 None:intergenic
AGAGGTGGTCATTCAAAATG+TGG 0.588995 1.3:-56443253 MS.gene005032:CDS
AGAAGATGAAGTTGTTGAGA+TGG 0.589182 1.3:-56443290 MS.gene005032:CDS
AATGGAAAGCAAGTAACTGT+TGG 0.589683 1.3:-56443469 MS.gene005032:CDS
AGACTTCTTGGAGGGAGAGG+TGG 0.591367 1.3:+56444119 None:intergenic
GATCTGACCTGGAGTCTGGT+AGG 0.592034 1.3:+56443784 None:intergenic
ACACCCACAGTTAACTCGAT+AGG 0.599349 1.3:+56443520 None:intergenic
GAAGATGAAGTTGTTGAGAT+GGG 0.607457 1.3:-56443289 MS.gene005032:CDS
ATGGGTGCACTTGAGAATAG+AGG 0.609253 1.3:-56443271 MS.gene005032:CDS
CAACTCCAGTTGATTCATGT+AGG 0.611940 1.3:-56444263 MS.gene005032:CDS
GGGAGAGGTGGCAAACAAAG+AGG 0.613458 1.3:+56444131 None:intergenic
ATATATAGAGACTTCTTGGA+GGG 0.621304 1.3:+56444111 None:intergenic
TGTGCTGGTTTGCATTTGAA+GGG 0.624273 1.3:-56443633 MS.gene005032:CDS
ATTCCTATCGAGTTAACTGT+GGG 0.634010 1.3:-56443523 MS.gene005032:CDS
CATCCTATCATAATAGACAA+TGG 0.639517 1.3:-56444075 MS.gene005032:CDS
TGATTGAGATCAAATCAGAT+GGG 0.649582 1.3:+56444175 None:intergenic
AATTCCTATCGAGTTAACTG+TGG 0.659838 1.3:-56443524 MS.gene005032:CDS
GGTGCACTTGAGAATAGAGG+TGG 0.690840 1.3:-56443268 MS.gene005032:CDS
TTTCAATTGGAGAAACAGAG+TGG 0.693660 1.3:-56443885 MS.gene005032:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATCTGAACTATTTAAA+TGG - chr1.3:56443628-56443647 MS.gene005032:CDS 15.0%
!! TTAGTAAAGAAAATCTAATT+AGG + chr1.3:56443796-56443815 None:intergenic 15.0%
!! AAATATCAACCAAAAATGTT+TGG - chr1.3:56444123-56444142 MS.gene005032:CDS 20.0%
! AGTAAAAATCGAAACTGATT+TGG + chr1.3:56443532-56443551 None:intergenic 25.0%
! CAAATAACTATGCGTATAAA+TGG - chr1.3:56444068-56444087 MS.gene005032:CDS 25.0%
! CATAATAGACAATGGTAAAA+AGG - chr1.3:56443488-56443507 MS.gene005032:CDS 25.0%
! CATTTATACGCATAGTTATT+TGG + chr1.3:56444070-56444089 None:intergenic 25.0%
! TAAAATTCAGAGCTTTCAAT+TGG - chr1.3:56443657-56443676 MS.gene005032:CDS 25.0%
! TTACCATTGTCTATTATGAT+AGG + chr1.3:56443486-56443505 None:intergenic 25.0%
!!! TATCATGTTTTTTCCTTCTT+CGG + chr1.3:56443229-56443248 None:intergenic 25.0%
AAATGTGGTTTCATTCTTGA+AGG - chr1.3:56444317-56444336 MS.gene005032:CDS 30.0%
AGAAGGAAAAAACATGATAG+AGG - chr1.3:56443230-56443249 MS.gene005032:CDS 30.0%
AGGAATTTCATCAAAACCAA+AGG + chr1.3:56444018-56444037 None:intergenic 30.0%
AGTGATATATAGAGACTTCT+TGG + chr1.3:56443451-56443470 None:intergenic 30.0%
ATATATAGAGACTTCTTGGA+GGG + chr1.3:56443447-56443466 None:intergenic 30.0%
ATCAACCAAAAATGTTTGGT+TGG - chr1.3:56444127-56444146 MS.gene005032:CDS 30.0%
ATGATTGAGATCAAATCAGA+TGG + chr1.3:56443384-56443403 None:intergenic 30.0%
ATGGGAGAATTCTTTAATTC+AGG - chr1.3:56444239-56444258 MS.gene005032:CDS 30.0%
CATCCTATCATAATAGACAA+TGG - chr1.3:56443480-56443499 MS.gene005032:CDS 30.0%
CATTGTCTATTATGATAGGA+TGG + chr1.3:56443482-56443501 None:intergenic 30.0%
GTTCTCTATCATCATATTCT+GGG + chr1.3:56444154-56444173 None:intergenic 30.0%
TGATTGAGATCAAATCAGAT+GGG + chr1.3:56443383-56443402 None:intergenic 30.0%
!!! AATGAGAAGTGATGGATTTT+TGG - chr1.3:56444208-56444227 MS.gene005032:CDS 30.0%
!!! ACTTGTATTTTTTCTCGCAT+TGG - chr1.3:56443818-56443837 MS.gene005032:CDS 30.0%
!!! TTGAAAGCTCTGAATTTTAG+TGG + chr1.3:56443656-56443675 None:intergenic 30.0%
AATCTAATTAGGATCTGACC+TGG + chr1.3:56443785-56443804 None:intergenic 35.0%
AATGGAAAGCAAGTAACTGT+TGG - chr1.3:56444086-56444105 MS.gene005032:CDS 35.0%
AATTCCTATCGAGTTAACTG+TGG - chr1.3:56444031-56444050 MS.gene005032:intron 35.0%
AGAAGATGAAGTTGTTGAGA+TGG - chr1.3:56444265-56444284 MS.gene005032:CDS 35.0%
AGAGATATCTCCATTGCTTT+GGG - chr1.3:56443718-56443737 MS.gene005032:intron 35.0%
AGCTGCATATTGAGTATTTG+AGG + chr1.3:56443970-56443989 None:intergenic 35.0%
AGTTGTATGCGACAATATCT+TGG + chr1.3:56443277-56443296 None:intergenic 35.0%
ATGGATATGAAAACCGAAGA+AGG - chr1.3:56443213-56443232 MS.gene005032:CDS 35.0%
ATTCCTATCGAGTTAACTGT+GGG - chr1.3:56444032-56444051 MS.gene005032:intron 35.0%
CCAAACAGTATCTGATTTAG+CGG + chr1.3:56443349-56443368 None:intergenic 35.0%
CGCTAAATCAGATACTGTTT+GGG - chr1.3:56443347-56443366 MS.gene005032:CDS 35.0%
CGTTCAAAAATGAGAAGTGA+TGG - chr1.3:56444200-56444219 MS.gene005032:CDS 35.0%
CGTTCTCTATCATCATATTC+TGG + chr1.3:56444155-56444174 None:intergenic 35.0%
GAAGATGAAGTTGTTGAGAT+GGG - chr1.3:56444266-56444285 MS.gene005032:CDS 35.0%
GATATATAGAGACTTCTTGG+AGG + chr1.3:56443448-56443467 None:intergenic 35.0%
TAGAGATATCTCCATTGCTT+TGG - chr1.3:56443717-56443736 MS.gene005032:intron 35.0%
TCTCAACAACTTCATCTTCT+AGG + chr1.3:56444265-56444284 None:intergenic 35.0%
TTCAAGATGATCAATGCCTT+TGG - chr1.3:56443999-56444018 MS.gene005032:intron 35.0%
TTTCAATTGGAGAAACAGAG+TGG - chr1.3:56443670-56443689 MS.gene005032:intron 35.0%
! AAACATGATAGAGGTTTTGC+CGG - chr1.3:56443239-56443258 MS.gene005032:CDS 35.0%
!! GGATTTTTGGAGATCAAGAT+GGG - chr1.3:56444221-56444240 MS.gene005032:CDS 35.0%
!! TGGATTTTTGGAGATCAAGA+TGG - chr1.3:56444220-56444239 MS.gene005032:CDS 35.0%
AAACAAAGAGGAAGCAGACT+GGG + chr1.3:56443415-56443434 None:intergenic 40.0%
ACACTCCTCAATATTGGGAT+TGG - chr1.3:56443743-56443762 MS.gene005032:intron 40.0%
AGAGGTGGTCATTCAAAATG+TGG - chr1.3:56444302-56444321 MS.gene005032:CDS 40.0%
ATTGGCCAATCCCAATATTG+AGG + chr1.3:56443751-56443770 None:intergenic 40.0%
CAAGTAACTGTTGGTGTACT+TGG - chr1.3:56444095-56444114 MS.gene005032:CDS 40.0%
CCGCTAAATCAGATACTGTT+TGG - chr1.3:56443346-56443365 MS.gene005032:CDS 40.0%
! CAACTCCAGTTGATTCATGT+AGG - chr1.3:56443292-56443311 MS.gene005032:CDS 40.0%
! TGGGTCCAACCAAACATTTT+TGG + chr1.3:56444135-56444154 None:intergenic 40.0%
!! TGTGCTGGTTTGCATTTGAA+GGG - chr1.3:56443922-56443941 MS.gene005032:intron 40.0%
ACACCCACAGTTAACTCGAT+AGG + chr1.3:56444038-56444057 None:intergenic 45.0%
AGGCTCTCACTTGTTTGCAA+GGG - chr1.3:56443312-56443331 MS.gene005032:CDS 45.0%
ATGGGTGCACTTGAGAATAG+AGG - chr1.3:56444284-56444303 MS.gene005032:CDS 45.0%
CAAACAAAGAGGAAGCAGAC+TGG + chr1.3:56443416-56443435 None:intergenic 45.0%
CCAGATTCAGAGAAGTTGCT+AGG - chr1.3:56443889-56443908 MS.gene005032:CDS 45.0%
CCTAGCAACTTCTCTGAATC+TGG + chr1.3:56443892-56443911 None:intergenic 45.0%
GAACGAGATGACGAGTTTCA+AGG - chr1.3:56444170-56444189 MS.gene005032:CDS 45.0%
GAGAGCCTACATGAATCAAC+TGG + chr1.3:56443300-56443319 None:intergenic 45.0%
GAGTTAACTGTGGGTGTACT+TGG - chr1.3:56444041-56444060 MS.gene005032:intron 45.0%
GGGTGACACTCCTCAATATT+GGG - chr1.3:56443738-56443757 MS.gene005032:intron 45.0%
TAGGCTCTCACTTGTTTGCA+AGG - chr1.3:56443311-56443330 MS.gene005032:CDS 45.0%
TGGGTGACACTCCTCAATAT+TGG - chr1.3:56443737-56443756 MS.gene005032:intron 45.0%
! ATGATAGAGGTTTTGCCGGA+GGG - chr1.3:56443243-56443262 MS.gene005032:CDS 45.0%
!! GTGTGCTGGTTTGCATTTGA+AGG - chr1.3:56443921-56443940 MS.gene005032:intron 45.0%
ATCTTGGCAATGCATCCCTC+CGG + chr1.3:56443261-56443280 None:intergenic 50.0%
CTAGGCTTCGTATAGTGTGC+TGG - chr1.3:56443907-56443926 MS.gene005032:intron 50.0%
GGTGCACTTGAGAATAGAGG+TGG - chr1.3:56444287-56444306 MS.gene005032:CDS 50.0%
TAGAGACTTCTTGGAGGGAG+AGG + chr1.3:56443442-56443461 None:intergenic 50.0%
TTAGGATCTGACCTGGAGTC+TGG + chr1.3:56443778-56443797 None:intergenic 50.0%
! CATGATAGAGGTTTTGCCGG+AGG - chr1.3:56443242-56443261 MS.gene005032:CDS 50.0%
!! AGGAGTGTCACCCAAAGCAA+TGG + chr1.3:56443731-56443750 None:intergenic 50.0%
AGACTTCTTGGAGGGAGAGG+TGG + chr1.3:56443439-56443458 None:intergenic 55.0%
GACCTGGAGTCTGGTAGGAT+TGG + chr1.3:56443769-56443788 None:intergenic 55.0%
GATCTGACCTGGAGTCTGGT+AGG + chr1.3:56443774-56443793 None:intergenic 55.0%
GGGAGAGGTGGCAAACAAAG+AGG + chr1.3:56443427-56443446 None:intergenic 55.0%
GGCCAATCCTACCAGACTCC+AGG - chr1.3:56443764-56443783 MS.gene005032:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 56443213 56444364 56443213 ID=MS.gene005032
chr1.3 mRNA 56443213 56444364 56443213 ID=MS.gene005032.t1;Parent=MS.gene005032
chr1.3 exon 56444068 56444364 56444068 ID=MS.gene005032.t1.exon1;Parent=MS.gene005032.t1
chr1.3 CDS 56444068 56444364 56444068 ID=cds.MS.gene005032.t1;Parent=MS.gene005032.t1
chr1.3 exon 56443792 56443910 56443792 ID=MS.gene005032.t1.exon2;Parent=MS.gene005032.t1
chr1.3 CDS 56443792 56443910 56443792 ID=cds.MS.gene005032.t1;Parent=MS.gene005032.t1
chr1.3 exon 56443213 56443684 56443213 ID=MS.gene005032.t1.exon3;Parent=MS.gene005032.t1
chr1.3 CDS 56443213 56443684 56443213 ID=cds.MS.gene005032.t1;Parent=MS.gene005032.t1
Gene Sequence

>MS.gene005032

ATGGATATGAAAACCGAAGAAGGAAAAAACATGATAGAGGTTTTGCCGGAGGGATGCATTGCCAAGATATTGTCGCATACAACTCCAGTTGATTCATGTAGGCTCTCACTTGTTTGCAAGGGCTTTTGTTCTGCCGCTAAATCAGATACTGTTTGGGATCGTTTTCTCCCATCTGATTTGATCTCAATCATTTCTGATTCCCAGTCTGCTTCCTCTTTGTTTGCCACCTCTCCCTCCAAGAAGTCTCTATATATCACTCTCTCTGACCATCCTATCATAATAGACAATGGTAAAAAGGTATCATTCTCACAAACTACCAAATCAGTTTCGATTTTTACTACAGATACTATTATATATTCATATATAATAATCATTCACTATTAGTTAGAATGTTAAACTTGACTCTTTTAATATATATTATCTGAACTATTTAAATGGTGCCACTAAAATTCAGAGCTTTCAATTGGAGAAACAGAGTGGTAGAAAGATATACATGCTTAGTGCTAGAGATATCTCCATTGCTTTGGGTGACACTCCTCAATATTGGGATTGGCCAATCCTACCAGACTCCAGGTCAGATCCTAATTAGATTTTCTTTACTAATTACTTGTATTTTTTCTCGCATTGGAGATGTGTTAATTGTGTTATTGATCTTGCGTTTATTTACAACTTTTGACCAGATTCAGAGAAGTTGCTAGGCTTCGTATAGTGTGCTGGTTTGCATTTGAAGGGACAATTAATAAACGTGTTCTATCCTCAAATACTCAATATGCAGCTTTTCTTGTCTTCAAGATGATCAATGCCTTTGGTTTTGATGAAATTCCTATCGAGTTAACTGTGGGTGTACTTGGAGACCAAATAACTATGCGTATAAATGGAAAGCAAGTAACTGTTGGTGTACTTGGAGATCAAATATCAACCAAAAATGTTTGGTTGGACCCAGAATATGATGATAGAGAACGAGATGACGAGTTTCAAGGACTAGAACGTTCAAAAATGAGAAGTGATGGATTTTTGGAGATCAAGATGGGAGAATTCTTTAATTCAGGCCTAGAAGATGAAGTTGTTGAGATGGGTGCACTTGAGAATAGAGGTGGTCATTCAAAATGTGGTTTCATTCTTGAAGGAATAGAAATAAGACCCAAGAATTAG
Protein sequence

>MS.gene005032.t1

MDMKTEEGKNMIEVLPEGCIAKILSHTTPVDSCRLSLVCKGFCSAAKSDTVWDRFLPSDLISIISDSQSASSLFATSPSKKSLYITLSDHPIIIDNGKKSFQLEKQSGRKIYMLSARDISIALGDTPQYWDWPILPDSRFREVARLRIVCWFAFEGTINKRVLSSNTQYAAFLVFKMINAFGFDEIPIELTVGVLGDQITMRINGKQVTVGVLGDQISTKNVWLDPEYDDRERDDEFQGLERSKMRSDGFLEIKMGEFFNSGLEDEVVEMGALENRGGHSKCGFILEGIEIRPKN