AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005019

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005019.t1 MTR_1g079250 98.000 300 6 0 1 300 1 300 0.0 609
MS.gene005019.t1 MTR_1g026510 74.419 301 72 1 1 296 1 301 2.46e-165 461
MS.gene005019.t1 MTR_1g079260 69.286 280 80 3 1 280 1 274 3.35e-137 389
MS.gene005019.t1 MTR_1g079180 67.626 278 77 5 1 278 1 265 3.91e-126 360
MS.gene005019.t1 MTR_1g079200 68.345 278 74 4 1 278 1 264 6.04e-124 355
MS.gene005019.t1 MTR_1g100597 66.549 284 83 7 1 281 1 275 9.77e-119 342
MS.gene005019.t1 MTR_1g079370 63.669 278 88 5 1 278 1 265 1.04e-118 342
MS.gene005019.t1 MTR_1g079850 64.583 288 91 5 1 281 1 284 2.18e-117 339
MS.gene005019.t1 MTR_1g079460 63.441 279 90 4 1 279 1 267 8.79e-115 332
MS.gene005019.t1 MTR_1g079380 63.103 290 93 6 1 289 1 277 3.28e-114 332
MS.gene005019.t1 MTR_1g079230 58.007 281 113 2 1 281 1 276 5.52e-99 292
MS.gene005019.t1 MTR_1g100613 64.730 241 74 4 20 255 5 239 7.87e-98 288
MS.gene005019.t1 MTR_3g006850 54.397 307 110 4 2 281 15 318 7.59e-95 283
MS.gene005019.t1 MTR_3g452600 56.522 276 101 6 4 278 10 267 2.15e-90 270
MS.gene005019.t1 MTR_1g079350 53.191 282 121 7 1 278 1 275 1.96e-86 260
MS.gene005019.t1 MTR_3g450990 51.370 292 107 8 4 278 10 283 1.37e-81 248
MS.gene005019.t1 MTR_2g079100 52.281 285 113 7 3 285 8 271 7.88e-80 243
MS.gene005019.t1 MTR_1g079410 47.163 282 130 6 3 279 7 274 5.94e-77 236
MS.gene005019.t1 MTR_7g096300 54.579 273 99 8 1 268 1 253 8.54e-77 249
MS.gene005019.t1 MTR_1g079340 49.320 294 125 7 1 278 40 325 1.43e-75 234
MS.gene005019.t1 MTR_1g079140 45.515 301 137 6 4 281 13 309 1.08e-72 226
MS.gene005019.t1 MTR_1g078470 56.771 192 68 5 87 278 8 184 1.56e-62 196
MS.gene005019.t1 MTR_1g079400 43.253 289 129 8 4 278 12 279 5.68e-62 198
MS.gene005019.t1 MTR_7g112550 42.049 283 144 8 7 278 10 283 3.23e-60 193
MS.gene005019.t1 MTR_1g083580 38.246 285 155 9 4 278 8 281 1.07e-54 179
MS.gene005019.t1 MTR_1g079240 50.265 189 73 4 90 278 12 179 7.97e-47 155
MS.gene005019.t1 MTR_7g112560 35.612 278 155 9 4 278 1 257 8.30e-45 153
MS.gene005019.t1 MTR_1g079350 60.150 133 51 1 1 131 1 133 2.15e-44 150
MS.gene005019.t1 MTR_2g042540 68.224 107 31 2 1 106 1 105 8.82e-43 144
MS.gene005019.t1 MTR_4g023570 35.018 277 138 9 4 278 1 237 1.22e-41 144
MS.gene005019.t1 MTR_1g079130 42.857 196 90 4 104 281 1 192 4.14e-38 134
MS.gene005019.t1 MTR_1g076870 55.714 140 41 5 131 256 2 134 8.37e-38 131
MS.gene005019.t1 MTR_7g096310 55.970 134 49 4 60 191 38 163 1.39e-33 121
MS.gene005019.t1 MTR_1g078460 63.441 93 31 1 1 93 64 153 7.67e-31 113
MS.gene005019.t1 MTR_3g058640 51.351 111 43 3 131 241 7 106 3.30e-24 94.7
MS.gene005019.t1 MTR_1g079210 50.794 126 53 4 132 251 7 129 1.16e-23 94.4
MS.gene005019.t1 MTR_7g103380 26.667 285 178 8 6 279 21 285 7.67e-21 90.5
MS.gene005019.t1 MTR_0113s0040 32.215 149 95 3 3 149 21 165 8.25e-20 87.4
MS.gene005019.t1 MTR_4g083970 28.643 199 109 6 83 278 122 290 1.07e-17 82.0
MS.gene005019.t1 MTR_1g101390 32.877 146 92 3 6 149 30 171 1.51e-17 81.3
MS.gene005019.t1 MTR_0002s0020 31.579 152 93 3 6 150 24 171 5.41e-17 79.7
MS.gene005019.t1 MTR_4g102770 33.333 144 95 1 6 149 21 163 8.13e-17 79.3
MS.gene005019.t1 MTR_5g010800 31.544 149 92 5 6 150 19 161 5.06e-16 77.0
MS.gene005019.t1 MTR_1g079220 51.948 77 26 3 168 244 1 66 4.32e-15 69.3
MS.gene005019.t1 MTR_1g079390 63.462 52 16 2 222 273 7 55 1.19e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005019.t1 AT2G02240 39.711 277 143 7 4 277 61 316 3.59e-60 194
MS.gene005019.t1 AT2G02250 40.364 275 145 7 4 277 47 303 7.89e-60 193
MS.gene005019.t1 AT1G80110 42.491 273 134 7 7 277 4 255 1.53e-59 191
MS.gene005019.t1 AT2G02360 38.628 277 145 7 4 277 14 268 1.81e-58 189
MS.gene005019.t1 AT2G02340 37.500 280 161 6 1 277 33 301 3.48e-57 186
MS.gene005019.t1 AT2G02230 34.951 309 160 7 4 278 32 333 7.15e-55 181
MS.gene005019.t1 AT1G09155 41.404 285 147 9 7 278 3 280 1.08e-54 179
MS.gene005019.t1 AT1G56250 38.028 284 158 7 7 278 4 281 3.06e-50 168
MS.gene005019.t1 AT1G56240 37.102 283 160 7 7 277 4 280 3.37e-50 167
MS.gene005019.t1 AT2G02350 36.170 282 153 10 2 277 22 282 2.83e-47 160
MS.gene005019.t1 AT2G02310 34.767 279 161 8 4 279 45 305 1.88e-42 148
MS.gene005019.t1 AT2G02300 34.155 284 148 10 2 279 32 282 5.97e-40 141
MS.gene005019.t1 AT2G02320 34.532 278 155 10 6 277 42 298 4.69e-39 139
MS.gene005019.t1 AT5G24560 47.917 144 69 2 4 147 3 140 9.90e-38 132
MS.gene005019.t1 AT3G53000 28.475 295 169 10 6 284 23 291 2.58e-25 102
MS.gene005019.t1 AT3G61060 25.352 284 181 11 6 283 27 285 1.39e-17 81.6
MS.gene005019.t1 AT2G02350 31.667 180 102 8 104 277 1 165 4.32e-17 77.8
MS.gene005019.t1 AT3G61060 25.263 285 181 12 6 283 27 286 2.91e-16 77.8
MS.gene005019.t1 AT5G52120 31.613 155 100 2 1 150 18 171 4.03e-15 74.7
MS.gene005019.t1 AT1G12710 30.137 146 97 3 6 150 30 171 6.68e-13 68.2
MS.gene005019.t1 AT1G63090 27.439 164 112 5 6 168 28 185 8.00e-12 65.1
MS.gene005019.t1 AT1G12710 28.302 159 109 3 6 163 30 184 5.68e-11 62.8

Find 83 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAACCAAGATTGTCATTT+TGG 0.152527 1.3:-56314459 MS.gene005019:CDS
ATGGGAGAGTTCTTCATTTC+AGG 0.198529 1.3:-56314323 MS.gene005019:CDS
TAGGTTGCATACAGAGTATT+TGG 0.278464 1.3:+56314569 None:intergenic
CATTATCGACGATGGTAAAA+AGG 0.282042 1.3:-56317667 MS.gene005019:intron
GGACTGCTATGCCTGATTCT+AGG 0.282404 1.3:-56317440 MS.gene005019:intron
GAATAAAGGATGGTTATTAT+TGG 0.295483 1.3:-56314265 MS.gene005019:CDS
GAAGTCCAAATGAGTATTAC+TGG 0.310031 1.3:-56314287 MS.gene005019:CDS
CTTGTGTTCAAGATGATTGA+TGG 0.318012 1.3:-56314545 MS.gene005019:CDS
TTAAGAAGCTCAACAACTTC+AGG 0.331549 1.3:+56314641 None:intergenic
TTATTCCAGTAATACTCATT+TGG 0.337010 1.3:+56314282 None:intergenic
AATGAGTATTACTGGAATAA+AGG 0.347461 1.3:-56314279 MS.gene005019:CDS
AAGCGGCTCAACAGAATATT+AGG 0.348185 1.3:-56314416 MS.gene005019:CDS
CCGCCGATTCCGACGCCGTC+TGG 0.349132 1.3:-56317806 MS.gene005019:CDS
GATGATAAAGTCGAAGAATT+GGG 0.349360 1.3:+56317761 None:intergenic
AGATGATAAAGTCGAAGAAT+TGG 0.361073 1.3:+56317760 None:intergenic
CTAGATCTCTCGACATTGAT+TGG 0.377382 1.3:-56317488 MS.gene005019:CDS
ATCTAAATACTTTGTTGTCC+TGG 0.383131 1.3:+56314390 None:intergenic
TTCAAGATGATTGATGGCTT+TGG 0.384715 1.3:-56314539 MS.gene005019:CDS
TGTTGTTTACTGTCTTCCTT+AGG 0.392054 1.3:+56314206 None:intergenic
GGGATGATGATGATGAATAT+TGG 0.392937 1.3:-56317467 MS.gene005019:CDS
TTACCATCGTCGATAATGAT+TGG 0.395680 1.3:+56317672 None:intergenic
CTCATTTGGACTTCTTCATC+TGG 0.401897 1.3:+56314296 None:intergenic
TTGTTGAAGGAATAGAAGTT+AGG 0.404080 1.3:-56314229 MS.gene005019:CDS
AGCCGCTTACATTCTACATC+TGG 0.408123 1.3:+56314431 None:intergenic
TATGCAGGGGTCTTGTGTCT+TGG 0.414010 1.3:-56314173 MS.gene005019:CDS
TACCATCGTCGATAATGATT+GGG 0.414053 1.3:+56317673 None:intergenic
TGAAATTCAGAGCGTTCAAT+TGG 0.422110 1.3:-56317547 MS.gene005019:intron
CACTCATCACTTCTAATACT+AGG 0.427579 1.3:+56314359 None:intergenic
AAGAGAGGTTTCTTTGTTGA+AGG 0.432696 1.3:-56314242 MS.gene005019:CDS
GCGAGCCTGCCGGCGTCAGC+CGG 0.451266 1.3:+56317855 None:intergenic
ATTCCAGACGGCGTCGGAAT+CGG 0.451722 1.3:+56317803 None:intergenic
TCAAGAGCAAACCTAGAATC+AGG 0.451979 1.3:+56317429 None:intergenic
AATCATCTTGAACACAAGAT+AGG 0.461642 1.3:+56314550 None:intergenic
ATCCACCAAAATGACAATCT+TGG 0.472362 1.3:+56314454 None:intergenic
TTGAGCTTCTTAATGTGTGT+CGG 0.475730 1.3:-56314631 MS.gene005019:CDS
ATGATGATGAATATTGGAAC+TGG 0.476935 1.3:-56317461 MS.gene005019:CDS
CAACATACACTGAACTATGC+AGG 0.482554 1.3:-56314188 MS.gene005019:CDS
TATCCGGTGGAGTTATCAAT+TGG 0.483330 1.3:-56314500 MS.gene005019:CDS
GATGGTTATTATTGGAAGAG+AGG 0.491434 1.3:-56314257 MS.gene005019:CDS
CAACTCCGGCTGACGCCGGC+AGG 0.503540 1.3:-56317860 MS.gene005019:CDS
TGAAACGACGGCGAGCCTGC+CGG 0.503825 1.3:+56317845 None:intergenic
TAGATCTCTCGACATTGATT+GGG 0.508576 1.3:-56317487 MS.gene005019:CDS
TAAGAAGCTCAACAACTTCA+GGG 0.509003 1.3:+56314642 None:intergenic
GTAGGAATGTTGTCAAAGGA+AGG 0.515212 1.3:+56317729 None:intergenic
GAGTATTTGGAGACAAGGTA+AGG 0.516217 1.3:+56314582 None:intergenic
CAACAGAATATTAGGTAGCC+AGG 0.528414 1.3:-56314408 MS.gene005019:CDS
GACGGCGTCGGAATCGGCGG+CGG 0.529719 1.3:+56317809 None:intergenic
AGGAATAGAAGTTAGGCCTA+AGG 0.529851 1.3:-56314222 MS.gene005019:CDS
GTGTGTCGGCTTGAAATTTG+TGG 0.532858 1.3:-56314617 MS.gene005019:CDS
AGTATTACTGGAATAAAGGA+TGG 0.539464 1.3:-56314275 MS.gene005019:CDS
TATTAGAAGTGATGAGTGGT+TGG 0.541422 1.3:-56314354 MS.gene005019:CDS
ACGGCGGCGATGCACCCTTC+CGG 0.545479 1.3:+56317894 None:intergenic
AACATACACTGAACTATGCA+GGG 0.555404 1.3:-56314187 MS.gene005019:CDS
ATGATAAAGTCGAAGAATTG+GGG 0.556539 1.3:+56317762 None:intergenic
CGTCGGAATCGGCGGCGGAA+CGG 0.560951 1.3:+56317814 None:intergenic
CCAGACGGCGTCGGAATCGG+CGG 0.569931 1.3:+56317806 None:intergenic
TTTGGTAGGAATGTTGTCAA+AGG 0.578056 1.3:+56317725 None:intergenic
GGGAGCGTTTGAAGAGCTAC+CGG 0.580772 1.3:-56317913 MS.gene005019:CDS
GTTCAATTGGATAGAAAGAG+TGG 0.587294 1.3:-56317534 MS.gene005019:CDS
TGAGTGGTTGGAAACTGAGA+TGG 0.598787 1.3:-56314342 MS.gene005019:CDS
GAGTGGTTGGAAACTGAGAT+GGG 0.600436 1.3:-56314341 MS.gene005019:CDS
TTATCAATTGGTGTCGAAGG+TGG 0.604871 1.3:-56314488 MS.gene005019:CDS
AATGATTGGGTGATTAGAGA+GGG 0.608594 1.3:+56317686 None:intergenic
TGACAATCTTGGTTAAACAA+TGG 0.608788 1.3:+56314465 None:intergenic
CGTGCTCTCTCGTACAACTC+CGG 0.611520 1.3:-56317874 MS.gene005019:CDS
ACACCAATTGATAACTCCAC+CGG 0.615684 1.3:+56314497 None:intergenic
GAGTTATCAATTGGTGTCGA+AGG 0.620147 1.3:-56314491 MS.gene005019:CDS
GCGTTTGAAGAGCTACCGGA+AGG 0.626050 1.3:-56317909 MS.gene005019:CDS
TAATGATTGGGTGATTAGAG+AGG 0.630069 1.3:+56317685 None:intergenic
ATACAGAGTATTTGGAGACA+AGG 0.630777 1.3:+56314577 None:intergenic
CACCCAATCATTATCGACGA+TGG 0.633143 1.3:-56317675 MS.gene005019:CDS
CGGAGTTGTACGAGAGAGCA+CGG 0.633809 1.3:+56317875 None:intergenic
ATCCAGATGTAGAATGTAAG+CGG 0.640825 1.3:-56314433 MS.gene005019:CDS
AAAATGATTCCAGACGGCGT+CGG 0.652221 1.3:+56317797 None:intergenic
AGTATTTGGAGACAAGGTAA+GGG 0.654998 1.3:+56314583 None:intergenic
CGTACAACTCCGGCTGACGC+CGG 0.655374 1.3:-56317864 MS.gene005019:CDS
TGAGAATGAGAACTATCCGG+TGG 0.662141 1.3:-56314513 MS.gene005019:CDS
CGTTTGAAGAGCTACCGGAA+GGG 0.662619 1.3:-56317908 MS.gene005019:CDS
ACGGAGAAAATGATTCCAGA+CGG 0.677220 1.3:+56317791 None:intergenic
CTAGTATTAGAAGTGATGAG+TGG 0.690762 1.3:-56314358 MS.gene005019:CDS
TGATAAAGTCGAAGAATTGG+GGG 0.696278 1.3:+56317763 None:intergenic
ACATACACTGAACTATGCAG+GGG 0.716246 1.3:-56314186 MS.gene005019:CDS
AGTTGTACGAGAGAGCACGG+CGG 0.857068 1.3:+56317878 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCATTTCAAAATAAAAT+TGG + chr1.3:56316400-56316419 None:intergenic 10.0%
!! AATGAAAAATAAATAGGATT+GGG + chr1.3:56315474-56315493 None:intergenic 15.0%
!! TCAATATGAAAAATAATGAA+TGG - chr1.3:56315102-56315121 MS.gene005019:intron 15.0%
!! TTATGCAATGAAAAATAAAT+AGG + chr1.3:56315480-56315499 None:intergenic 15.0%
!!! TATTTGAAACTTAATTAAAG+AGG + chr1.3:56315749-56315768 None:intergenic 15.0%
!! AGCATTAATATTCAAGAAAT+CGG + chr1.3:56314447-56314466 None:intergenic 20.0%
!! CAATGAAAAATAAATAGGAT+TGG + chr1.3:56315475-56315494 None:intergenic 20.0%
!! TAACTGATTGTGATAAAATT+TGG + chr1.3:56317290-56317309 None:intergenic 20.0%
!! TACAAAATATTGTGAAATAG+TGG + chr1.3:56315921-56315940 None:intergenic 20.0%
!! TTAAAGAGGAATAATTAAAG+AGG + chr1.3:56315735-56315754 None:intergenic 20.0%
!! TTTCTTTAATGTCATGAATT+GGG - chr1.3:56316142-56316161 MS.gene005019:intron 20.0%
!!! AAAAAAAAACTGCTATTTTC+GGG + chr1.3:56315879-56315898 None:intergenic 20.0%
!!! AAGATCATTTTTCATTTCAA+GGG - chr1.3:56316661-56316680 MS.gene005019:intron 20.0%
!!! ACAAGGAATACATTTAAAAT+CGG + chr1.3:56316056-56316075 None:intergenic 20.0%
!!! CTTATCTTTTTGTATCTTTT+GGG - chr1.3:56317385-56317404 MS.gene005019:intron 20.0%
!!! GAAAAAAAAACTGCTATTTT+CGG + chr1.3:56315880-56315899 None:intergenic 20.0%
!!! TCTTATCTTTTTGTATCTTT+TGG - chr1.3:56317384-56317403 MS.gene005019:intron 20.0%
!!! TTGGTCATTTTTTCTTAAAT+GGG + chr1.3:56316466-56316485 None:intergenic 20.0%
!!! TTTGGTCATTTTTTCTTAAA+TGG + chr1.3:56316467-56316486 None:intergenic 20.0%
!!! TTTTCATTGCATAATTTACT+TGG - chr1.3:56315486-56315505 MS.gene005019:intron 20.0%
! AAAGAAATCAATGCAAATGA+AGG + chr1.3:56315415-56315434 None:intergenic 25.0%
! AAAGAGGAATATCAAGAAAT+GGG + chr1.3:56315719-56315738 None:intergenic 25.0%
! AATGAGTATTACTGGAATAA+AGG - chr1.3:56317790-56317809 MS.gene005019:CDS 25.0%
! ATCAATTTGAACTTGAATGA+AGG + chr1.3:56315537-56315556 None:intergenic 25.0%
! CACATATTGTATGATATAAC+TGG - chr1.3:56316638-56316657 MS.gene005019:intron 25.0%
! CAGTTATATCATACAATATG+TGG + chr1.3:56316640-56316659 None:intergenic 25.0%
! CTTTCTTTAATGTCATGAAT+TGG - chr1.3:56316141-56316160 MS.gene005019:intron 25.0%
! GAATAAAGGATGGTTATTAT+TGG - chr1.3:56317804-56317823 MS.gene005019:CDS 25.0%
! GAATCCAAAATCTAATGATT+TGG + chr1.3:56315444-56315463 None:intergenic 25.0%
! TAAAGAGGAATATCAAGAAA+TGG + chr1.3:56315720-56315739 None:intergenic 25.0%
! TGATATGATTTAGTTATGCT+TGG - chr1.3:56317315-56317334 MS.gene005019:intron 25.0%
! TTAAAATCGGAAAAGAAAGT+TGG + chr1.3:56316043-56316062 None:intergenic 25.0%
! TTATTATTGTCTACCACAAA+CGG - chr1.3:56316606-56316625 MS.gene005019:intron 25.0%
! TTATTCCAGTAATACTCATT+TGG + chr1.3:56317790-56317809 None:intergenic 25.0%
! TTCAGATCAAAAAGCTAATT+TGG + chr1.3:56316485-56316504 None:intergenic 25.0%
! TTGAATAAAAGAGAGTTTCA+AGG + chr1.3:56315086-56315105 None:intergenic 25.0%
! TTGTAACAGCTAATATAACT+TGG - chr1.3:56317247-56317266 MS.gene005019:intron 25.0%
!! AATGTATTCCTTGTTATGTA+TGG - chr1.3:56316062-56316081 MS.gene005019:intron 25.0%
!! AGTATGTCATGTCTTTTTAT+GGG - chr1.3:56314997-56315016 MS.gene005019:intron 25.0%
!! ATAAAGTATCAGAATGTAGT+CGG - chr1.3:56315766-56315785 MS.gene005019:intron 25.0%
!! ATGTATTCCTTGTTATGTAT+GGG - chr1.3:56316063-56316082 MS.gene005019:intron 25.0%
!! ATGTGCCTAAACATATTTTA+AGG - chr1.3:56314929-56314948 MS.gene005019:intron 25.0%
!! TAAAGTGGAATCTGATATTT+TGG + chr1.3:56317192-56317211 None:intergenic 25.0%
!! TGATCCAAATCATTAGATTT+TGG - chr1.3:56315437-56315456 MS.gene005019:intron 25.0%
!!! AAAAAAAACTGCTATTTTCG+GGG + chr1.3:56315878-56315897 None:intergenic 25.0%
!!! GAAGATCATTTTTCATTTCA+AGG - chr1.3:56316660-56316679 MS.gene005019:intron 25.0%
!!! TTTAACCAAGATTGTCATTT+TGG - chr1.3:56317610-56317629 MS.gene005019:intron 25.0%
AAATATGTTTAGGCACATGA+TGG + chr1.3:56314927-56314946 None:intergenic 30.0%
AACAATACTGAAAACCAACT+TGG + chr1.3:56317167-56317186 None:intergenic 30.0%
AAGATTGGAGGAAAATAAAG+TGG + chr1.3:56317207-56317226 None:intergenic 30.0%
AATCATCTTGAACACAAGAT+AGG + chr1.3:56317522-56317541 None:intergenic 30.0%
ACAATACTGAAAACCAACTT+GGG + chr1.3:56317166-56317185 None:intergenic 30.0%
ACTCAGAATTATAGTAGTGT+TGG + chr1.3:56316513-56316532 None:intergenic 30.0%
AGATGATAAAGTCGAAGAAT+TGG + chr1.3:56314312-56314331 None:intergenic 30.0%
AGTATTACTGGAATAAAGGA+TGG - chr1.3:56317794-56317813 MS.gene005019:CDS 30.0%
ATGATAAAGTCGAAGAATTG+GGG + chr1.3:56314310-56314329 None:intergenic 30.0%
ATGGATCAAGTAAATGGAAT+AGG + chr1.3:56315589-56315608 None:intergenic 30.0%
ATGTTACAATGCCAATGAAT+TGG - chr1.3:56316234-56316253 MS.gene005019:intron 30.0%
ATTCCATTTACTTGATCCAT+TGG - chr1.3:56315589-56315608 MS.gene005019:intron 30.0%
ATTTGGACACAAGAGATAAA+TGG + chr1.3:56315352-56315371 None:intergenic 30.0%
CAAGTAAATGGAATAGGTAT+AGG + chr1.3:56315583-56315602 None:intergenic 30.0%
CACAGAAATACAAATTCTAC+TGG + chr1.3:56314710-56314729 None:intergenic 30.0%
CTCAGAATTATAGTAGTGTT+GGG + chr1.3:56316512-56316531 None:intergenic 30.0%
CTTCTTCACTAACTTCAATT+TGG + chr1.3:56315149-56315168 None:intergenic 30.0%
GAGAGCCTTAAAATATGTTT+AGG + chr1.3:56314937-56314956 None:intergenic 30.0%
GATGATAAAGTCGAAGAATT+GGG + chr1.3:56314311-56314330 None:intergenic 30.0%
GATTCTATTTCCTATGTAAG+TGG - chr1.3:56315027-56315046 MS.gene005019:intron 30.0%
GGATGAGGAACATAAAAATT+TGG - chr1.3:56317102-56317121 MS.gene005019:intron 30.0%
TAATGAATGGTTGAATATGC+TGG - chr1.3:56315115-56315134 MS.gene005019:intron 30.0%
TCACATAAGCAGGAAAAATT+AGG + chr1.3:56316752-56316771 None:intergenic 30.0%
TCTATCCACAATTATTGTGA+GGG - chr1.3:56317080-56317099 MS.gene005019:intron 30.0%
TCTTGTGTCCAAATTTAACT+TGG - chr1.3:56315358-56315377 MS.gene005019:intron 30.0%
TGACAATCTTGGTTAAACAA+TGG + chr1.3:56317607-56317626 None:intergenic 30.0%
TGATGTGAAATTCCATTAGT+TGG + chr1.3:56316277-56316296 None:intergenic 30.0%
TGGATATCTGTCAAATTCAA+GGG + chr1.3:56316352-56316371 None:intergenic 30.0%
TTCTATCCACAATTATTGTG+AGG - chr1.3:56317079-56317098 MS.gene005019:intron 30.0%
TTGTACTAGATAACGTATTG+CGG - chr1.3:56315936-56315955 MS.gene005019:intron 30.0%
TTGTCCTCTTGATATTTGAA+CGG - chr1.3:56316964-56316983 MS.gene005019:intron 30.0%
TTGTTGAAGGAATAGAAGTT+AGG - chr1.3:56317840-56317859 MS.gene005019:CDS 30.0%
TTTGGACACAAGAGATAAAT+GGG + chr1.3:56315351-56315370 None:intergenic 30.0%
! ATCTAAATACTTTGTTGTCC+TGG + chr1.3:56317682-56317701 None:intergenic 30.0%
! ATGATGATGAATATTGGAAC+TGG - chr1.3:56314608-56314627 MS.gene005019:CDS 30.0%
! GAGTATGTCATGTCTTTTTA+TGG - chr1.3:56314996-56315015 MS.gene005019:intron 30.0%
! TAAAGTATCAGAATGTAGTC+GGG - chr1.3:56315767-56315786 MS.gene005019:intron 30.0%
! TATCTTTTGGGCACAAATTT+TGG - chr1.3:56317397-56317416 MS.gene005019:intron 30.0%
! TCACTGTTATGAAAAAGCAT+AGG + chr1.3:56316556-56316575 None:intergenic 30.0%
!! TGTCCAAATTTAACTTGGAA+TGG - chr1.3:56315363-56315382 MS.gene005019:intron 30.0%
!! TTTTGAGAATGAGAACTATC+CGG - chr1.3:56317553-56317572 MS.gene005019:intron 30.0%
!!! AGATAGAGAGATTTTTTGGT+AGG + chr1.3:56314361-56314380 None:intergenic 30.0%
!!! CATTTTTTCTTAAATGGGAG+AGG + chr1.3:56316461-56316480 None:intergenic 30.0%
AAAAGAGAGTTTCAAGGATG+AGG + chr1.3:56315080-56315099 None:intergenic 35.0%
AAAGAGAGTTTCAAGGATGA+GGG + chr1.3:56315079-56315098 None:intergenic 35.0%
AACATACACTGAACTATGCA+GGG - chr1.3:56317882-56317901 MS.gene005019:CDS 35.0%
AAGAGAGGTTTCTTTGTTGA+AGG - chr1.3:56317827-56317846 MS.gene005019:CDS 35.0%
AATGATTGGGTGATTAGAGA+GGG + chr1.3:56314386-56314405 None:intergenic 35.0%
ACAAGAAGTTTCACATAAGC+AGG + chr1.3:56316762-56316781 None:intergenic 35.0%
ACATCTTCTTCCTCACAAAA+AGG + chr1.3:56317132-56317151 None:intergenic 35.0%
ACCAGTTAAAGCCAATTCAT+TGG + chr1.3:56316248-56316267 None:intergenic 35.0%
AGTATTTGGAGACAAGGTAA+GGG + chr1.3:56317489-56317508 None:intergenic 35.0%
ATAACCGATGTTGTCAATTG+TGG - chr1.3:56315850-56315869 MS.gene005019:intron 35.0%
ATAAGAAACAGAAGCAATGC+AGG + chr1.3:56317370-56317389 None:intergenic 35.0%
ATCCACCAAAATGACAATCT+TGG + chr1.3:56317618-56317637 None:intergenic 35.0%
ATCCAGATGTAGAATGTAAG+CGG - chr1.3:56317636-56317655 MS.gene005019:intron 35.0%
CAAATTCTACTGGAGTAACA+TGG + chr1.3:56314700-56314719 None:intergenic 35.0%
CACTCATCACTTCTAATACT+AGG + chr1.3:56317713-56317732 None:intergenic 35.0%
CATTATCGACGATGGTAAAA+AGG - chr1.3:56314402-56314421 MS.gene005019:CDS 35.0%
CTAGTATTAGAAGTGATGAG+TGG - chr1.3:56317711-56317730 MS.gene005019:CDS 35.0%
CTATCCACAATTATTGTGAG+GGG - chr1.3:56317081-56317100 MS.gene005019:intron 35.0%
CTTGTGTTCAAGATGATTGA+TGG - chr1.3:56317524-56317543 MS.gene005019:CDS 35.0%
GAAGTCCAAATGAGTATTAC+TGG - chr1.3:56317782-56317801 MS.gene005019:CDS 35.0%
GATCCAATGGATCAAGTAAA+TGG + chr1.3:56315595-56315614 None:intergenic 35.0%
GATGGTTATTATTGGAAGAG+AGG - chr1.3:56317812-56317831 MS.gene005019:CDS 35.0%
GCTCCATTCCAAGTTAAATT+TGG + chr1.3:56315369-56315388 None:intergenic 35.0%
GTGAAATTCCATTAGTTGGA+AGG + chr1.3:56316273-56316292 None:intergenic 35.0%
GTGAATAGTTAACTAAGGGA+TGG + chr1.3:56316794-56316813 None:intergenic 35.0%
GTGGATATCTGTCAAATTCA+AGG + chr1.3:56316353-56316372 None:intergenic 35.0%
GTTCAAATATCAAGAGGACA+AGG + chr1.3:56316965-56316984 None:intergenic 35.0%
GTTCAATTGGATAGAAAGAG+TGG - chr1.3:56314535-56314554 MS.gene005019:CDS 35.0%
TAACAGACCCATACATAACA+AGG + chr1.3:56316073-56316092 None:intergenic 35.0%
TAAGAAGCTCAACAACTTCA+GGG + chr1.3:56317430-56317449 None:intergenic 35.0%
TAATGATTGGGTGATTAGAG+AGG + chr1.3:56314387-56314406 None:intergenic 35.0%
TACCATCGTCGATAATGATT+GGG + chr1.3:56314399-56314418 None:intergenic 35.0%
TACTGGAGTAACATGGTAAT+AGG + chr1.3:56314693-56314712 None:intergenic 35.0%
TATTAGAAGTGATGAGTGGT+TGG - chr1.3:56317715-56317734 MS.gene005019:CDS 35.0%
TCGGGTGAATAGTTAACTAA+GGG + chr1.3:56316798-56316817 None:intergenic 35.0%
TGAAGAGAAATATCAGACAG+TGG + chr1.3:56316850-56316869 None:intergenic 35.0%
TGAAGTTAGTGAAGAAGCTT+TGG - chr1.3:56315152-56315171 MS.gene005019:intron 35.0%
TGATAAAGTCGAAGAATTGG+GGG + chr1.3:56314309-56314328 None:intergenic 35.0%
TGTGGATAGAATAACACATG+AGG + chr1.3:56317070-56317089 None:intergenic 35.0%
TTAAGAAGCTCAACAACTTC+AGG + chr1.3:56317431-56317450 None:intergenic 35.0%
TTACCATCGTCGATAATGAT+TGG + chr1.3:56314400-56314419 None:intergenic 35.0%
TTCGGGTGAATAGTTAACTA+AGG + chr1.3:56316799-56316818 None:intergenic 35.0%
TTGAGCTTCTTAATGTGTGT+CGG - chr1.3:56317438-56317457 MS.gene005019:intron 35.0%
TTTGGTAGGAATGTTGTCAA+AGG + chr1.3:56314347-56314366 None:intergenic 35.0%
! ATACAGAGTATTTGGAGACA+AGG + chr1.3:56317495-56317514 None:intergenic 35.0%
! ATTTGGATGTCCTTTTTGTG+AGG - chr1.3:56317119-56317138 MS.gene005019:intron 35.0%
! GGGATGATGATGATGAATAT+TGG - chr1.3:56314602-56314621 MS.gene005019:CDS 35.0%
! TACTACGTGTTGTTGAATAG+CGG + chr1.3:56316015-56316034 None:intergenic 35.0%
! TACTCAGCTTTGATCAGTAA+TGG + chr1.3:56314981-56315000 None:intergenic 35.0%
! TAGATCTCTCGACATTGATT+GGG - chr1.3:56314582-56314601 MS.gene005019:CDS 35.0%
! TAGGTTGCATACAGAGTATT+TGG + chr1.3:56317503-56317522 None:intergenic 35.0%
! TATTTTCCTCCAATCTTGAG+AGG - chr1.3:56317210-56317229 MS.gene005019:intron 35.0%
! TGAAATTCAGAGCGTTCAAT+TGG - chr1.3:56314522-56314541 MS.gene005019:CDS 35.0%
! TGTTGTTTACTGTCTTCCTT+AGG + chr1.3:56317866-56317885 None:intergenic 35.0%
! TTCAAGATGATTGATGGCTT+TGG - chr1.3:56317530-56317549 MS.gene005019:CDS 35.0%
!!! AACCAAGATTGTCATTTTGG+TGG - chr1.3:56317613-56317632 MS.gene005019:intron 35.0%
!!! ACGGAAAGTTTTTGAAACGA+CGG + chr1.3:56314239-56314258 None:intergenic 35.0%
!!! GGCAAGATAGAGAGATTTTT+TGG + chr1.3:56314365-56314384 None:intergenic 35.0%
AAGAGAGTTTCAAGGATGAG+GGG + chr1.3:56315078-56315097 None:intergenic 40.0%
AAGCGGCTCAACAGAATATT+AGG - chr1.3:56317653-56317672 MS.gene005019:intron 40.0%
ACAATTATTGTGAGGGGATG+AGG - chr1.3:56317087-56317106 MS.gene005019:intron 40.0%
ACATACACTGAACTATGCAG+GGG - chr1.3:56317883-56317902 MS.gene005019:CDS 40.0%
ACGGAGAAAATGATTCCAGA+CGG + chr1.3:56314281-56314300 None:intergenic 40.0%
AGGAATAGAAGTTAGGCCTA+AGG - chr1.3:56317847-56317866 MS.gene005019:CDS 40.0%
AGTCCATGAAGAAGCTGAAT+AGG - chr1.3:56317044-56317063 MS.gene005019:intron 40.0%
ATGGGAGAGTTCTTCATTTC+AGG - chr1.3:56317746-56317765 MS.gene005019:CDS 40.0%
CAACAGAATATTAGGTAGCC+AGG - chr1.3:56317661-56317680 MS.gene005019:intron 40.0%
CAACATACACTGAACTATGC+AGG - chr1.3:56317881-56317900 MS.gene005019:CDS 40.0%
CAGTAACTGACCACTTACAT+AGG + chr1.3:56315040-56315059 None:intergenic 40.0%
CTAGATCTCTCGACATTGAT+TGG - chr1.3:56314581-56314600 MS.gene005019:CDS 40.0%
CTCATTTGGACTTCTTCATC+TGG + chr1.3:56317776-56317795 None:intergenic 40.0%
CTGTCAAATTCAAGGGATGT+TGG + chr1.3:56316345-56316364 None:intergenic 40.0%
GAAGTGAGAGAAGCTGAAAA+TGG + chr1.3:56316718-56316737 None:intergenic 40.0%
GAGTATTTGGAGACAAGGTA+AGG + chr1.3:56317490-56317509 None:intergenic 40.0%
GGAAATTCAGTGTGACTTGA+GGG + chr1.3:56315698-56315717 None:intergenic 40.0%
GGATCCACAATTGACAACAT+CGG + chr1.3:56315857-56315876 None:intergenic 40.0%
GGTCTGTTAGCTAAACAACA+TGG - chr1.3:56316084-56316103 MS.gene005019:intron 40.0%
GTAGGAATGTTGTCAAAGGA+AGG + chr1.3:56314343-56314362 None:intergenic 40.0%
TATCCGGTGGAGTTATCAAT+TGG - chr1.3:56317569-56317588 MS.gene005019:intron 40.0%
TCAAGAGCAAACCTAGAATC+AGG + chr1.3:56314643-56314662 None:intergenic 40.0%
TCATCCCCTCACAATAATTG+TGG + chr1.3:56317088-56317107 None:intergenic 40.0%
TTCGCCGTTCAAATATCAAG+AGG + chr1.3:56316971-56316990 None:intergenic 40.0%
TTGTTGAATAGCGGCTATAG+CGG + chr1.3:56316006-56316025 None:intergenic 40.0%
! ACACCAATTGATAACTCCAC+CGG + chr1.3:56317575-56317594 None:intergenic 40.0%
! ACTGGTTTCCTTCCAACTAA+TGG - chr1.3:56316262-56316281 MS.gene005019:intron 40.0%
! TTTGGGCACAAATTTTGGAC+AGG - chr1.3:56317402-56317421 MS.gene005019:intron 40.0%
!! GAGTTATCAATTGGTGTCGA+AGG - chr1.3:56317578-56317597 MS.gene005019:intron 40.0%
!! GCCAATGAATTGGCTTTAAC+TGG - chr1.3:56316244-56316263 MS.gene005019:intron 40.0%
!! TACATGGGGACTCATTTTTC+TGG + chr1.3:56316936-56316955 None:intergenic 40.0%
!! TTATCAATTGGTGTCGAAGG+TGG - chr1.3:56317581-56317600 MS.gene005019:intron 40.0%
AAAATGATTCCAGACGGCGT+CGG + chr1.3:56314275-56314294 None:intergenic 45.0%
AAAGTCGAAGAATTGGGGGT+CGG + chr1.3:56314305-56314324 None:intergenic 45.0%
AATGTGAACCTCGGTAACAG+TGG - chr1.3:56316817-56316836 MS.gene005019:intron 45.0%
AGACTCCATATTCCAAGCCA+CGG + chr1.3:56315265-56315284 None:intergenic 45.0%
AGAGTGAGAGGAAATGCATC+TGG + chr1.3:56316205-56316224 None:intergenic 45.0%
AGCACATTAAGTCAGACCAG+TGG - chr1.3:56315218-56315237 MS.gene005019:intron 45.0%
AGCAGTTGGCAAGGAAGATT+GGG - chr1.3:56315631-56315650 MS.gene005019:intron 45.0%
AGCCGCTTACATTCTACATC+TGG + chr1.3:56317641-56317660 None:intergenic 45.0%
AGGACAAGGCTCGTATACAT+GGG + chr1.3:56316951-56316970 None:intergenic 45.0%
AGGCCTATTCAGCTTCTTCA+TGG + chr1.3:56317050-56317069 None:intergenic 45.0%
ATTCACCCGAATGTGAACCT+CGG - chr1.3:56316808-56316827 MS.gene005019:intron 45.0%
CACCCAATCATTATCGACGA+TGG - chr1.3:56314394-56314413 MS.gene005019:CDS 45.0%
CAGGCTCATCAGCTAAACTT+TGG + chr1.3:56317351-56317370 None:intergenic 45.0%
CATCTGAAAGACAGAGTGAG+AGG + chr1.3:56316217-56316236 None:intergenic 45.0%
CATTAAGTCAGACCAGTGGT+TGG - chr1.3:56315222-56315241 MS.gene005019:intron 45.0%
CCAACACTAGTAACAGAACC+GGG - chr1.3:56314848-56314867 MS.gene005019:intron 45.0%
CGGAATGATGAAGGATCCAA+TGG + chr1.3:56315608-56315627 None:intergenic 45.0%
CTGTTACCGAGGTTCACATT+CGG + chr1.3:56316817-56316836 None:intergenic 45.0%
GAGATAAATGGGTCGAGAGA+TGG + chr1.3:56315340-56315359 None:intergenic 45.0%
GAGGAGAATAGCAGTAGAGA+TGG + chr1.3:56316428-56316447 None:intergenic 45.0%
GAGTGGTTGGAAACTGAGAT+GGG - chr1.3:56317728-56317747 MS.gene005019:CDS 45.0%
GATATCCACTGTTTCAGCCT+CGG - chr1.3:56316364-56316383 MS.gene005019:intron 45.0%
GCCAACACTAGTAACAGAAC+CGG - chr1.3:56314847-56314866 MS.gene005019:intron 45.0%
GGGAAATTCAGTGTGACTTG+AGG + chr1.3:56315699-56315718 None:intergenic 45.0%
GGTTATGAGCATGGTAGACT+TGG + chr1.3:56315677-56315696 None:intergenic 45.0%
GTCTACCACAAACGGTGAAA+AGG - chr1.3:56316614-56316633 MS.gene005019:intron 45.0%
TCAGAAACTTGTCCAACCAC+TGG + chr1.3:56315237-56315256 None:intergenic 45.0%
TGACTTGAGGGTTATGAGCA+TGG + chr1.3:56315686-56315705 None:intergenic 45.0%
TGAGAATGAGAACTATCCGG+TGG - chr1.3:56317556-56317575 MS.gene005019:intron 45.0%
TGAGTGGTTGGAAACTGAGA+TGG - chr1.3:56317727-56317746 MS.gene005019:CDS 45.0%
TGGGAGAGGTAACTATGTTG+AGG + chr1.3:56316447-56316466 None:intergenic 45.0%
TGTTACCGAGGTTCACATTC+GGG + chr1.3:56316816-56316835 None:intergenic 45.0%
TTTCCTCCAATCTTGAGAGG+AGG - chr1.3:56317213-56317232 MS.gene005019:intron 45.0%
TTTGAACGGCGAACTTGACT+AGG - chr1.3:56316978-56316997 MS.gene005019:intron 45.0%
! GTAGTCGGGAATCTAGAGTT+GGG - chr1.3:56315781-56315800 MS.gene005019:intron 45.0%
! TAACTTGGAATGGAGCACTC+TGG - chr1.3:56315373-56315392 MS.gene005019:intron 45.0%
! TGTAGTCGGGAATCTAGAGT+TGG - chr1.3:56315780-56315799 MS.gene005019:intron 45.0%
!! GTGTGTCGGCTTGAAATTTG+TGG - chr1.3:56317452-56317471 MS.gene005019:CDS 45.0%
!! AAATATTAAAAAAAAAAAGA+AGG - chr1.3:56315826-56315845 MS.gene005019:intron 5.0%
ACAAGTTTCTGATGCCACCG+TGG - chr1.3:56315245-56315264 MS.gene005019:intron 50.0%
ACTGCTGTGCGGAATGATGA+AGG + chr1.3:56315617-56315636 None:intergenic 50.0%
CAGAGCTCTGCTGTCATTAG+AGG - chr1.3:56314886-56314905 MS.gene005019:intron 50.0%
CAGCAGTTGGCAAGGAAGAT+TGG - chr1.3:56315630-56315649 MS.gene005019:intron 50.0%
CCCGGTTCTGTTACTAGTGT+TGG + chr1.3:56314851-56314870 None:intergenic 50.0%
CGAGAGATGGATGTGTGCTT+TGG + chr1.3:56315327-56315346 None:intergenic 50.0%
CGTTTGAAGAGCTACCGGAA+GGG - chr1.3:56314161-56314180 MS.gene005019:CDS 50.0%
CTCTAATGACAGCAGAGCTC+TGG + chr1.3:56314888-56314907 None:intergenic 50.0%
GAAATGCATCTGGCCAGCAA+AGG + chr1.3:56316195-56316214 None:intergenic 50.0%
GAGGACAAGGCTCGTATACA+TGG + chr1.3:56316952-56316971 None:intergenic 50.0%
GCAGTTGGCAAGGAAGATTG+GGG - chr1.3:56315632-56315651 MS.gene005019:intron 50.0%
GGACAAGGCTCGTATACATG+GGG + chr1.3:56316950-56316969 None:intergenic 50.0%
GGACTGCTATGCCTGATTCT+AGG - chr1.3:56314629-56314648 MS.gene005019:CDS 50.0%
GTCTGTTGTCGTTCCCAAGT+TGG - chr1.3:56317150-56317169 MS.gene005019:intron 50.0%
GTGGGATGACTTGACGACAA+CGG + chr1.3:56314799-56314818 None:intergenic 50.0%
TCATCATTCCGCACAGCAGT+TGG - chr1.3:56315617-56315636 MS.gene005019:intron 50.0%
TGTTGGCAGTCCAACTTCGT+GGG + chr1.3:56314834-56314853 None:intergenic 50.0%
! TATGCAGGGGTCTTGTGTCT+TGG - chr1.3:56317896-56317915 MS.gene005019:CDS 50.0%
! TGTGGCCTTTTCACCGTTTG+TGG + chr1.3:56316622-56316641 None:intergenic 50.0%
! TTAGGCACATGATGGCGCAT+CGG + chr1.3:56314919-56314938 None:intergenic 50.0%
!! GGGGAGAGTGTTGTTCATTG+TGG - chr1.3:56315651-56315670 MS.gene005019:intron 50.0%
AACAGCCGAGGCTGAAACAG+TGG + chr1.3:56316372-56316391 None:intergenic 55.0%
ACCACTACCACCCACGAAGT+TGG - chr1.3:56314821-56314840 MS.gene005019:intron 55.0%
ACTGTTTCAGCCTCGGCTGT+TGG - chr1.3:56316371-56316390 MS.gene005019:intron 55.0%
ATGCATCTGGCCAGCAAAGG+TGG + chr1.3:56316192-56316211 None:intergenic 55.0%
ATTCCGCACAGCAGTTGGCA+AGG - chr1.3:56315622-56315641 MS.gene005019:intron 55.0%
CCTCCAATCTTGAGAGGAGG+CGG - chr1.3:56317216-56317235 MS.gene005019:intron 55.0%
CGAAGAATTGGGGGTCGGAA+CGG + chr1.3:56314300-56314319 None:intergenic 55.0%
CGGAGTTGTACGAGAGAGCA+CGG + chr1.3:56314197-56314216 None:intergenic 55.0%
CGTGCTCTCTCGTACAACTC+CGG - chr1.3:56314195-56314214 MS.gene005019:CDS 55.0%
CTCCAATCTTGAGAGGAGGC+GGG - chr1.3:56317217-56317236 MS.gene005019:intron 55.0%
CTCCATATTCCAAGCCACGG+TGG + chr1.3:56315262-56315281 None:intergenic 55.0%
CTGGCAATGAAGAGATCGCC+CGG + chr1.3:56314869-56314888 None:intergenic 55.0%
CTGTTTCAGCCTCGGCTGTT+GGG - chr1.3:56316372-56316391 MS.gene005019:intron 55.0%
CTTCCTTGCCAACTGCTGTG+CGG + chr1.3:56315628-56315647 None:intergenic 55.0%
GATCACCACCACTGTTACCG+AGG + chr1.3:56316828-56316847 None:intergenic 55.0%
GCAAAGGTGGGCACATGGTA+TGG + chr1.3:56316179-56316198 None:intergenic 55.0%
GCGTTTGAAGAGCTACCGGA+AGG - chr1.3:56314160-56314179 MS.gene005019:CDS 55.0%
GTGAACCTCGGTAACAGTGG+TGG - chr1.3:56316820-56316839 MS.gene005019:intron 55.0%
TACCATGTGCCCACCTTTGC+TGG - chr1.3:56316179-56316198 MS.gene005019:intron 55.0%
TCCAACTTCGTGGGTGGTAG+TGG + chr1.3:56314825-56314844 None:intergenic 55.0%
TCCAATCTTGAGAGGAGGCG+GGG - chr1.3:56317218-56317237 MS.gene005019:intron 55.0%
TGCATCTGGCCAGCAAAGGT+GGG + chr1.3:56316191-56316210 None:intergenic 55.0%
TTTCTGATGCCACCGTGGCT+TGG - chr1.3:56315250-56315269 MS.gene005019:intron 55.0%
! AAATTGGTGCCCAACAGCCG+AGG + chr1.3:56316384-56316403 None:intergenic 55.0%
! ACATGATGGCGCATCGGCAT+CGG + chr1.3:56314913-56314932 None:intergenic 55.0%
! AGTTGTACGAGAGAGCACGG+CGG + chr1.3:56314194-56314213 None:intergenic 55.0%
! ATTCCAGACGGCGTCGGAAT+CGG + chr1.3:56314269-56314288 None:intergenic 55.0%
! GTGTTGGCAGTCCAACTTCG+TGG + chr1.3:56314835-56314854 None:intergenic 55.0%
! TGCCACCGTGGCTTGGAATA+TGG - chr1.3:56315257-56315276 MS.gene005019:intron 55.0%
!! ACTTCGTGGGTGGTAGTGGT+TGG + chr1.3:56314821-56314840 None:intergenic 55.0%
!! GGGAGCGTTTGAAGAGCTAC+CGG - chr1.3:56314156-56314175 MS.gene005019:CDS 55.0%
ACCCCGCCTCCTCTCAAGAT+TGG + chr1.3:56317222-56317241 None:intergenic 60.0%
CCGCCTCCTCTCAAGATTGG+AGG + chr1.3:56317219-56317238 None:intergenic 60.0%
TGGCAGTCCAACTTCGTGGG+TGG + chr1.3:56314831-56314850 None:intergenic 60.0%
!! CGTGGGTGGTAGTGGTTGGT+GGG + chr1.3:56314817-56314836 None:intergenic 60.0%
!! TCGTGGGTGGTAGTGGTTGG+TGG + chr1.3:56314818-56314837 None:intergenic 60.0%
CGTACAACTCCGGCTGACGC+CGG - chr1.3:56314205-56314224 MS.gene005019:CDS 65.0%
GGCCAGCAAAGGTGGGCACA+TGG + chr1.3:56316184-56316203 None:intergenic 65.0%
TGAAACGACGGCGAGCCTGC+CGG + chr1.3:56314227-56314246 None:intergenic 65.0%
ACGGCGGCGATGCACCCTTC+CGG + chr1.3:56314178-56314197 None:intergenic 70.0%
CGTCGGAATCGGCGGCGGAA+CGG + chr1.3:56314258-56314277 None:intergenic 70.0%
! CCAGACGGCGTCGGAATCGG+CGG + chr1.3:56314266-56314285 None:intergenic 70.0%
CAACTCCGGCTGACGCCGGC+AGG - chr1.3:56314209-56314228 MS.gene005019:CDS 75.0%
! GACGGCGTCGGAATCGGCGG+CGG + chr1.3:56314263-56314282 None:intergenic 75.0%
!! CCGCCGATTCCGACGCCGTC+TGG - chr1.3:56314263-56314282 MS.gene005019:CDS 75.0%
! GCGAGCCTGCCGGCGTCAGC+CGG + chr1.3:56314217-56314236 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 56314154 56317937 56314154 ID=MS.gene005019
chr1.3 mRNA 56314154 56317937 56314154 ID=MS.gene005019.t1;Parent=MS.gene005019
chr1.3 exon 56317668 56317937 56317668 ID=MS.gene005019.t1.exon1;Parent=MS.gene005019.t1
chr1.3 CDS 56317668 56317937 56317668 ID=cds.MS.gene005019.t1;Parent=MS.gene005019.t1
chr1.3 exon 56317441 56317559 56317441 ID=MS.gene005019.t1.exon2;Parent=MS.gene005019.t1
chr1.3 CDS 56317441 56317559 56317441 ID=cds.MS.gene005019.t1;Parent=MS.gene005019.t1
chr1.3 exon 56314154 56314667 56314154 ID=MS.gene005019.t1.exon3;Parent=MS.gene005019.t1
chr1.3 CDS 56314154 56314667 56314154 ID=cds.MS.gene005019.t1;Parent=MS.gene005019.t1
Gene Sequence

>MS.gene005019

ATGGGAGCGTTTGAAGAGCTACCGGAAGGGTGCATCGCCGCCGTGCTCTCTCGTACAACTCCGGCTGACGCCGGCAGGCTCGCCGTCGTTTCAAAAACTTTCCGTTCCGCCGCCGATTCCGACGCCGTCTGGAATCATTTTCTCCGTTCCGACCCCCAATTCTTCGACTTTATCATCTCACACTCTCCTTCCTTTGACAACATTCCTACCAAAAAATCTCTCTATCTTGCCCTCTCTAATCACCCAATCATTATCGACGATGGTAAAAAGGTATCATTCTTCGTCAATCACCGATTTCTTGAATATTAATGCTTATTATCATTGACTGATTAGTAATTAATTTGAATTGAATTAATTGTTGTATATGTTGAAATTCAGAGCGTTCAATTGGATAGAAAGAGTGGAAAAAAGTGTGTCATGCTTGCTGCTAGATCTCTCGACATTGATTGGGATGATGATGATGAATATTGGAACTGGACTGCTATGCCTGATTCTAGGTTTGCTCTTGAACTTTTCTATTTGTTTAACTGTTCTTACCTATTACCATGTTACTCCAGTAGAATTTGTATTTCTGTGTAATGTATGTGTGTCTAGACATAGCACATGAATTTCACTTAATGCTAATTGAACATAATTGTTTAACCGTTGTCGTCAAGTCATCCCACCAACCACTACCACCCACGAAGTTGGACTGCCAACACTAGTAACAGAACCGGGCGATCTCTTCATTGCCAGAGCTCTGCTGTCATTAGAGGTCCGATGCCGATGCGCCATCATGTGCCTAAACATATTTTAAGGCTCTCTCTTTCGAAAGTCGAATCAAGCCATTACTGATCAAAGCTGAGTATGTCATGTCTTTTTATGGGCTTGAATGATTCTATTTCCTATGTAAGTGGTCAGTTACTGTTGATTGATCATGTTCCCCTCATCCTTGAAACTCTCTTTTATTCAATATGAAAAATAATGAATGGTTGAATATGCTGGTGAAACTTCCAAATTGAAGTTAGTGAAGAAGCTTTGGTCAGTTAGTGCTCAATGTGTTGTTCTACTTCATTCAAGTTTAAAGCACATTAAGTCAGACCAGTGGTTGGACAAGTTTCTGATGCCACCGTGGCTTGGAATATGGAGTCTATACTCTATTCTGTCACTTTGCTTCAGTCAGCTAAGTTTCCAAAGCACACATCCATCTCTCGACCCATTTATCTCTTGTGTCCAAATTTAACTTGGAATGGAGCACTCTGGTCTTTCATCTTATAGTCCTTCATTTGCATTGATTTCTTTCTTGATCCAAATCATTAGATTTTGGATTCTATGACACCCAATCCTATTTATTTTTCATTGCATAATTTACTTGGTATGAATTGTGTTCACTTTTCAGTTCCTTCATTCAAGTTCAAATTGATTTCTCTTAATTCATTGCTATAAACCTATACCTATTCCATTTACTTGATCCATTGGATCCTTCATCATTCCGCACAGCAGTTGGCAAGGAAGATTGGGGAGAGTGTTGTTCATTGTGGCCAAGTCTACCATGCTCATAACCCTCAAGTCACACTGAATTTCCCATTTCTTGATATTCCTCTTTAATTATTCCTCTTTAATTAAGTTTCAAATAAAGTATCAGAATGTAGTCGGGAATCTAGAGTTGGGCATTTGTCTTCAAAATGTTTTTAAATATTAAAAAAAAAAAGAAGGTATAACCGATGTTGTCAATTGTGGATCCCCGAAAATAGCAGTTTTTTTTTCTTTCAAATTCTGCTATAGCCACTATTTCACAATATTTTGTACTAGATAACGTATTGCGGAACAATTGCGATTTGTTCAGATTCTGCGCAGTAGTGTTATAGCACCGCTATAGCCGCTATTCAACAACACGTAGTATAACACCAACTTTCTTTTCCGATTTTAAATGTATTCCTTGTTATGTATGGGTCTGTTAGCTAAACAACATGGACTTTCATTTTATGTAAATAATAACTCATTTGTTCTTTCTTTAATGTCATGAATTGGGATGTTCGAAGTCCATACCATGTGCCCACCTTTGCTGGCCAGATGCATTTCCTCTCACTCTGTCTTTCAGATGTTACAATGCCAATGAATTGGCTTTAACTGGTTTCCTTCCAACTAATGGAATTTCACATCAATTTTTAAGTGTAAGACTGCAATTTAAATATGTTGAGAATAAACACCAACATCCCTTGAATTTGACAGATATCCACTGTTTCAGCCTCGGCTGTTGGGCACCAATTTTATTTTGAAATGATTTATTCTCCATCTCTACTGCTATTCTCCTCAACATAGTTACCTCTCCCATTTAAGAAAAAATGACCAAATTAGCTTTTTGATCTGAAGTCTCCCAACACTACTATAATTCTGAGTTTTTAGCTTTTTATGCTGTGCCTATGCTTTTTCATAACAGTGAGATAAGTTCTCTGATAGCAACATTACTGCATTATTATTGTCTACCACAAACGGTGAAAAGGCCACATATTGTATGATATAACTGGAAGATCATTTTTCATTTCAAGGGATGTAAAGTTGAATGAAACTAATAGTACTTTCCATTTTCAGCTTCTCTCACTTCTTTCACTTACTCCTAATTTTTCCTGCTTATGTGAAACTTCTTGTTAGATTATTCCATCCCTTAGTTAACTATTCACCCGAATGTGAACCTCGGTAACAGTGGTGGTGATCCACTGTCTGATATTTCTCTTCAAAGATAGTTAATAAGTAGAATATTAATATACTTGACAAGTTCTAGAGTACATTAGTTATGCTTCCAGAAAAATGAGTCCCCATGTATACGAGCCTTGTCCTCTTGATATTTGAACGGCGAACTTGACTAGGTTCTCATATTTTCTGAGACTTCATCGTTACAGTAACACTTGCAAGTCCATGAAGAAGCTGAATAGGCCTCATGTGTTATTCTATCCACAATTATTGTGAGGGGATGAGGAACATAAAAATTTGGATGTCCTTTTTGTGAGGAAGAAGATGTCTGTTGTCGTTCCCAAGTTGGTTTTCAGTATTGTTGTCCAAAATATCAGATTCCACTTTATTTTCCTCCAATCTTGAGAGGAGGCGGGGTATTATTTGTAACAGCTAATATAACTTGGTTTATCATAATCAGTTACCAAATTTTATCACAATCAGTTACAGCTTGATATGATTTAGTTATGCTTGGTTTACAGTTTCCAAAGTTTAGCTGATGAGCCTGCATTGCTTCTGTTTCTTATCTTTTTGTATCTTTTGGGCACAAATTTTGGACAGGTTCCCTGAAGTTGTTGAGCTTCTTAATGTGTGTCGGCTTGAAATTTGTGGCAAGATAAACACCCTTACCTTGTCTCCAAATACTCTGTATGCAACCTATCTTGTGTTCAAGATGATTGATGGCTTTGGTTTTGAGAATGAGAACTATCCGGTGGAGTTATCAATTGGTGTCGAAGGTGGCCATTGTTTAACCAAGATTGTCATTTTGGTGGATCCAGATGTAGAATGTAAGCGGCTCAACAGAATATTAGGTAGCCAGGACAACAAAGTATTTAGATTGAAACGTCCTAGTATTAGAAGTGATGAGTGGTTGGAAACTGAGATGGGAGAGTTCTTCATTTCAGGCTTACCAGATGAAGAAGTCCAAATGAGTATTACTGGAATAAAGGATGGTTATTATTGGAAGAGAGGTTTCTTTGTTGAAGGAATAGAAGTTAGGCCTAAGGAAGACAGTAAACAACATACACTGAACTATGCAGGGGTCTTGTGTCTTGGATTTCAGAATAGTGCCTAA
Protein sequence

>MS.gene005019.t1

MGAFEELPEGCIAAVLSRTTPADAGRLAVVSKTFRSAADSDAVWNHFLRSDPQFFDFIISHSPSFDNIPTKKSLYLALSNHPIIIDDGKKSVQLDRKSGKKCVMLAARSLDIDWDDDDEYWNWTAMPDSRFPEVVELLNVCRLEICGKINTLTLSPNTLYATYLVFKMIDGFGFENENYPVELSIGVEGGHCLTKIVILVDPDVECKRLNRILGSQDNKVFRLKRPSIRSDEWLETEMGEFFISGLPDEEVQMSITGIKDGYYWKRGFFVEGIEVRPKEDSKQHTLNYAGVLCLGFQNSA