AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34488

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34488.t1 MTR_1g100597 62.903 310 78 7 1 308 1 275 2.30e-118 342
MS.gene34488.t1 MTR_1g100613 67.037 270 58 6 20 288 5 244 3.47e-113 327
MS.gene34488.t1 MTR_1g079370 54.397 307 96 7 1 305 1 265 6.17e-96 284
MS.gene34488.t1 MTR_1g079230 52.581 310 111 7 1 308 1 276 6.71e-93 277
MS.gene34488.t1 MTR_1g079180 51.899 316 90 8 1 305 1 265 7.21e-93 276
MS.gene34488.t1 MTR_1g079260 51.290 310 114 8 1 308 1 275 2.06e-86 260
MS.gene34488.t1 MTR_1g079460 51.118 313 104 8 1 308 1 269 5.45e-85 256
MS.gene34488.t1 MTR_3g006850 50.305 328 118 10 2 308 15 318 4.15e-84 256
MS.gene34488.t1 MTR_1g079850 51.393 323 103 11 1 308 1 284 5.00e-83 252
MS.gene34488.t1 MTR_1g079200 50.318 314 97 11 1 305 1 264 6.25e-80 243
MS.gene34488.t1 MTR_1g079380 51.466 307 105 7 1 305 1 265 8.49e-79 242
MS.gene34488.t1 MTR_1g026510 47.003 317 128 11 1 308 1 286 2.34e-75 233
MS.gene34488.t1 MTR_1g079250 47.812 320 116 10 1 308 1 281 9.91e-75 231
MS.gene34488.t1 MTR_3g452600 45.752 306 120 6 4 308 10 270 5.36e-72 223
MS.gene34488.t1 MTR_3g450990 45.098 306 138 8 4 308 10 286 2.31e-65 207
MS.gene34488.t1 MTR_1g079410 44.013 309 123 10 4 305 8 273 1.24e-61 197
MS.gene34488.t1 MTR_2g079100 42.532 308 115 7 3 302 8 261 1.13e-60 194
MS.gene34488.t1 MTR_1g079350 42.006 319 127 12 1 305 1 275 1.85e-58 189
MS.gene34488.t1 MTR_1g079340 41.358 324 133 10 1 305 40 325 2.19e-54 180
MS.gene34488.t1 MTR_1g076870 65.926 135 40 3 157 285 1 135 8.04e-53 170
MS.gene34488.t1 MTR_7g096300 42.177 294 109 10 1 285 1 242 7.37e-49 174
MS.gene34488.t1 MTR_1g078470 58.228 158 49 4 149 305 43 184 1.54e-48 160
MS.gene34488.t1 MTR_1g079140 34.462 325 161 11 4 306 13 307 6.96e-44 152
MS.gene34488.t1 MTR_1g079400 35.714 322 133 10 4 305 12 279 9.77e-44 151
MS.gene34488.t1 MTR_1g079210 64.463 121 42 1 159 278 7 127 8.27e-42 141
MS.gene34488.t1 MTR_7g112550 36.013 311 160 11 2 305 5 283 2.76e-41 145
MS.gene34488.t1 MTR_1g079240 52.703 148 49 3 158 305 53 179 5.35e-36 128
MS.gene34488.t1 MTR_1g083580 32.026 306 176 9 2 305 6 281 3.50e-35 129
MS.gene34488.t1 MTR_3g058640 53.982 113 39 1 158 270 7 106 2.08e-30 111
MS.gene34488.t1 MTR_1g078460 67.949 78 25 0 1 78 64 141 7.11e-28 105
MS.gene34488.t1 MTR_7g112560 29.747 316 151 14 4 306 1 258 7.59e-26 103
MS.gene34488.t1 MTR_1g079130 38.728 173 88 6 149 305 19 189 4.72e-23 94.4
MS.gene34488.t1 MTR_1g079350 61.039 77 27 1 1 74 1 77 1.28e-22 94.0
MS.gene34488.t1 MTR_4g023570 29.276 304 146 11 4 305 1 237 1.19e-21 92.0
MS.gene34488.t1 MTR_2g042540 60.526 76 28 2 1 74 1 76 1.84e-20 85.9
MS.gene34488.t1 MTR_1g079220 54.430 79 23 1 195 273 1 66 3.80e-17 75.1
MS.gene34488.t1 MTR_7g096310 51.351 74 33 1 143 216 93 163 3.44e-13 67.0
MS.gene34488.t1 MTR_1g079390 63.265 49 17 1 252 300 8 55 3.65e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34488.t1 AT2G02360 33.227 313 139 10 4 304 14 268 5.71e-41 144
MS.gene34488.t1 AT2G02240 33.775 302 153 8 4 304 61 316 3.14e-35 130
MS.gene34488.t1 AT2G02250 32.781 302 157 8 4 304 47 303 1.93e-34 127
MS.gene34488.t1 AT1G09155 31.429 315 163 10 7 305 3 280 4.21e-34 126
MS.gene34488.t1 AT1G56250 31.949 313 166 10 7 306 4 282 4.93e-32 120
MS.gene34488.t1 AT2G02340 33.010 309 156 11 4 304 36 301 5.24e-32 121
MS.gene34488.t1 AT2G02350 29.967 307 165 10 2 304 22 282 1.53e-30 117
MS.gene34488.t1 AT1G56240 31.410 312 165 10 7 304 4 280 3.51e-30 115
MS.gene34488.t1 AT2G02320 30.744 309 152 9 6 304 42 298 7.55e-29 112
MS.gene34488.t1 AT1G80110 32.566 304 149 12 6 304 3 255 1.54e-28 110
MS.gene34488.t1 AT2G02310 27.778 306 171 9 4 305 45 304 2.40e-22 95.1
MS.gene34488.t1 AT2G02350 28.497 193 106 5 116 304 1 165 2.87e-17 78.6

Find 83 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCTGCATATTGAGTATT+TGG 0.137691 1.2:+75380873 None:intergenic
CTAGATCTCTTGCCATTACT+TGG 0.259697 1.2:-75382218 MS.gene34488:CDS
TTGGGATTGAATAGTCTAAA+AGG 0.288504 1.2:+75381377 None:intergenic
TAGCACTAAAATTGTTTGTT+TGG 0.300698 1.2:-75380769 MS.gene34488:CDS
GATAGGTTGATGCAAGATAA+AGG 0.320491 1.2:+75382411 None:intergenic
ATGGGAGAGTTCTTCAATTC+AGG 0.321358 1.2:-75380621 MS.gene34488:CDS
TTTGGGTGTATAGTTTCCTT+TGG 0.321994 1.2:+75381358 None:intergenic
CATTATCGACAATGGCAAAA+AGG 0.323000 1.2:-75382389 MS.gene34488:CDS
AAGCTGCATATTGAGTATTT+GGG 0.339648 1.2:+75380874 None:intergenic
TGTTACAGAGGTTCAGATTT+GGG 0.342680 1.2:+75381341 None:intergenic
AGACGAAGTTTAGCAACTTT+GGG 0.346858 1.2:+75380945 None:intergenic
CGCTACTGGAACTGGATTCC+AGG 0.347399 1.2:-75382183 MS.gene34488:intron
TTGCCATTGTCGATAATGAT+AGG 0.347824 1.2:+75382394 None:intergenic
CCGCCGATTCCGACGCCGTC+TGG 0.348839 1.2:-75382511 MS.gene34488:CDS
TTGGGTGTATAGTTTCCTTT+GGG 0.359349 1.2:+75381359 None:intergenic
ATGACAACCGCTACTGGAAC+TGG 0.371010 1.2:-75382191 MS.gene34488:CDS
AAGACGAAGTTTAGCAACTT+TGG 0.372100 1.2:+75380944 None:intergenic
CTGTTACAGAGGTTCAGATT+TGG 0.384648 1.2:+75381340 None:intergenic
TATGAGTGTTATCGAGATAA+AGG 0.385187 1.2:-75380580 MS.gene34488:CDS
ATGTATACGAATTCCGCATT+TGG 0.390839 1.2:+75380744 None:intergenic
TTCTCGAAGGAATAGAAGTT+AGG 0.399223 1.2:-75380533 MS.gene34488:CDS
TTCAAAATGATTGATTCCTA+TGG 0.400444 1.2:-75380843 MS.gene34488:CDS
AGGTCAGATAACAGAGTAGT+AGG 0.418025 1.2:-75380690 MS.gene34488:CDS
GGGGTGATGACAACCGCTAC+TGG 0.422453 1.2:-75382197 MS.gene34488:CDS
CGGAGTCGTACGAGACAGTA+TGG 0.434692 1.2:+75382580 None:intergenic
TTATCTCGATAACACTCATA+TGG 0.435546 1.2:+75380583 None:intergenic
CGTCGGAATCGGCGGCATAA+AGG 0.436620 1.2:+75382519 None:intergenic
TAGATCTCTTGCCATTACTT+GGG 0.440419 1.2:-75382217 MS.gene34488:CDS
GTTGCTTAATTGTCTACCTT+AGG 0.444416 1.2:+75380510 None:intergenic
ATTCCAGACGGCGTCGGAAT+CGG 0.451722 1.2:+75382508 None:intergenic
ACGATAGAGTCGACGTCGGA+AGG 0.464466 1.2:+75382476 None:intergenic
GAGAATCTACCGGCGTCAAC+CGG 0.472067 1.2:+75382560 None:intergenic
ATAGGTTGATGCAAGATAAA+GGG 0.482121 1.2:+75382412 None:intergenic
TAGGATTGCCGCGGCCTAGT+TGG 0.483978 1.2:-75380671 MS.gene34488:CDS
TCAAAATGATTGATTCCTAT+GGG 0.503514 1.2:-75380842 MS.gene34488:CDS
CGATAGAGTCGACGTCGGAA+GGG 0.510665 1.2:+75382477 None:intergenic
GTTGGAGAAGTGGTAGGTGG+TGG 0.510954 1.2:-75380653 MS.gene34488:CDS
GACAGGGTTTGAAGATTTAG+CGG 0.514285 1.2:-75382618 MS.gene34488:CDS
AGGAATAGAAGTTAGGCCTA+AGG 0.524720 1.2:-75380526 MS.gene34488:CDS
TAGGTGGTGGGAGATTGAGA+TGG 0.526412 1.2:-75380640 MS.gene34488:CDS
GATTTATCTGTCGGTGTCGA+AGG 0.528126 1.2:-75380801 MS.gene34488:CDS
AGGTGGTGGGAGATTGAGAT+GGG 0.529389 1.2:-75380639 MS.gene34488:CDS
AGATCTCTTGCCATTACTTG+GGG 0.535874 1.2:-75382216 MS.gene34488:CDS
TTGGAGAAGTGGTAGGTGGT+GGG 0.536804 1.2:-75380652 MS.gene34488:CDS
GGCGGCATAAAGGAAAGTCT+TGG 0.538988 1.2:+75382529 None:intergenic
GGGTTTGAAGATTTAGCGGA+AGG 0.539826 1.2:-75382614 MS.gene34488:CDS
GTGTGGTGGCTCGAAATTCG+TGG 0.547967 1.2:-75380921 MS.gene34488:CDS
CTTCCTGTAGATTTATCTGT+CGG 0.550684 1.2:-75380810 MS.gene34488:CDS
AAGGGCAATTTCTTTCTCGA+AGG 0.553494 1.2:-75380546 MS.gene34488:CDS
CACCTACCACTTCTCCAACT+AGG 0.555718 1.2:+75380657 None:intergenic
GTTGTCATCACCCCAAGTAA+TGG 0.556839 1.2:+75382206 None:intergenic
ACACCGACAGATAAATCTAC+AGG 0.556842 1.2:+75380807 None:intergenic
GATAAAGGCTGGCGAGACAA+AGG 0.558520 1.2:-75380565 MS.gene34488:CDS
ATAAAGGCTGGCGAGACAAA+GGG 0.561504 1.2:-75380564 MS.gene34488:CDS
CTAAACTTCGTCTTGTGTGG+TGG 0.562220 1.2:-75380935 MS.gene34488:CDS
AAATGAGGAGAAAGTGAGGG+AGG 0.569946 1.2:+75381419 None:intergenic
CATACTGTCTCGTACGACTC+CGG 0.570766 1.2:-75382579 MS.gene34488:CDS
AGTGTTATCGAGATAAAGGC+TGG 0.573301 1.2:-75380576 MS.gene34488:CDS
TTTAGACTATTCAATCCCAA+AGG 0.574601 1.2:-75381374 MS.gene34488:CDS
CCAGACGGCGTCGGAATCGG+CGG 0.580387 1.2:+75382511 None:intergenic
CCGCGGCCTAGTTGGAGAAG+TGG 0.590220 1.2:-75380663 MS.gene34488:CDS
GACGAAGTTTAGCAACTTTG+GGG 0.591928 1.2:+75380946 None:intergenic
TTGCTAAACTTCGTCTTGTG+TGG 0.595135 1.2:-75380938 MS.gene34488:CDS
CAACCTATCATTATCGACAA+TGG 0.600808 1.2:-75382397 MS.gene34488:CDS
AGCTGCATATTGAGTATTTG+GGG 0.601395 1.2:+75380875 None:intergenic
AGGAAGGTTCTCAAACCCAT+AGG 0.604433 1.2:+75380827 None:intergenic
ATATTGAGTATTTGGGGACA+AGG 0.608473 1.2:+75380881 None:intergenic
TGTTTGTTTGGATCCAAATG+CGG 0.611023 1.2:-75380757 MS.gene34488:CDS
TGTGGTGGCTCGAAATTCGT+GGG 0.618223 1.2:-75380920 MS.gene34488:CDS
TTATCTGTCGGTGTCGAAGG+TGG 0.618376 1.2:-75380798 MS.gene34488:CDS
CTGGAATCCAGTTCCAGTAG+CGG 0.638107 1.2:+75382184 None:intergenic
AAAATGATTCCAGACGGCGT+CGG 0.652221 1.2:+75382502 None:intergenic
CTAGTTGGAGAAGTGGTAGG+TGG 0.655061 1.2:-75380656 MS.gene34488:CDS
TTCGTATACATCAGAGACAG+AGG 0.658529 1.2:-75380732 MS.gene34488:CDS
CGTACGACTCCGGTTGACGC+CGG 0.662520 1.2:-75382569 MS.gene34488:CDS
GGCCTAGTTGGAGAAGTGGT+AGG 0.668040 1.2:-75380659 MS.gene34488:CDS
GGAAACGACAGAGAATCTAC+CGG 0.672922 1.2:+75382550 None:intergenic
AGGGAGAAAATGATTCCAGA+CGG 0.678403 1.2:+75382496 None:intergenic
ACAGAGTAGTAGGATTGCCG+CGG 0.680550 1.2:-75380680 MS.gene34488:CDS
CGACAGATAAATCTACAGGA+AGG 0.687255 1.2:+75380811 None:intergenic
CCACTTCTCCAACTAGGCCG+CGG 0.703895 1.2:+75380663 None:intergenic
TGAGACGATAGAGTCGACGT+CGG 0.756214 1.2:+75382472 None:intergenic
AGTCGTACGAGACAGTATGG+TGG 0.758050 1.2:+75382583 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAGGAAAAAAAAT+TGG + chr1.2:75381388-75381407 None:intergenic 15.0%
!! TATTATATGATTGTTTATCA+TGG + chr1.2:75381205-75381224 None:intergenic 15.0%
!! AATAAAAGTGAGAAAATGAA+AGG + chr1.2:75381400-75381419 None:intergenic 20.0%
!! AGAAGAAAAAAAAGTTGAAA+AGG + chr1.2:75382124-75382143 None:intergenic 20.0%
!! ATATGAAACATTCAATGAAA+TGG + chr1.2:75381491-75381510 None:intergenic 20.0%
!!! TTTCATTTTCTCACTTTTAT+TGG - chr1.2:75381399-75381418 MS.gene34488:CDS 20.0%
! AATGAAATGGAATGAACAAT+TGG + chr1.2:75381478-75381497 None:intergenic 25.0%
! AGGATTCATAACATCAAAAA+TGG + chr1.2:75382104-75382123 None:intergenic 25.0%
! CAATTCTTGTATTCTTATCT+CGG - chr1.2:75382144-75382163 MS.gene34488:intron 25.0%
! CTAGAGCTTAAAAAAATCAA+AGG + chr1.2:75381360-75381379 None:intergenic 25.0%
! GGAAATAATTTAGCTATCAT+TGG - chr1.2:75381911-75381930 MS.gene34488:intron 25.0%
! TAGCACTAAAATTGTTTGTT+TGG - chr1.2:75382366-75382385 MS.gene34488:CDS 25.0%
! TATGCAAGATGAAAAACAAT+GGG - chr1.2:75381564-75381583 MS.gene34488:intron 25.0%
!! ATTCATTGTTTTCTCATGTT+AGG - chr1.2:75380779-75380798 MS.gene34488:CDS 25.0%
!! TCAAAATGATTGATTCCTAT+GGG - chr1.2:75382293-75382312 MS.gene34488:intron 25.0%
!! TTATCATAATCGATTTCACT+TGG - chr1.2:75381890-75381909 MS.gene34488:intron 25.0%
!! TTCAAAATGATTGATTCCTA+TGG - chr1.2:75382292-75382311 MS.gene34488:intron 25.0%
!!! AAACAATTTTAGTGCTACTA+TGG + chr1.2:75382363-75382382 None:intergenic 25.0%
!!! CTTTGATTTTTTTAAGCTCT+AGG - chr1.2:75381358-75381377 MS.gene34488:CDS 25.0%
!!! GAGTTGTTTCAAAGTTTTTT+TGG - chr1.2:75381967-75381986 MS.gene34488:intron 25.0%
!!! TGGTAAAAATATTTTGCTGT+TGG - chr1.2:75381987-75382006 MS.gene34488:intron 25.0%
AAAAAATGAGGAGAAAGTGA+GGG + chr1.2:75381722-75381741 None:intergenic 30.0%
AAGCTGCATATTGAGTATTT+GGG + chr1.2:75382264-75382283 None:intergenic 30.0%
AGAAAAGTTAAGATCAAACC+TGG + chr1.2:75380973-75380992 None:intergenic 30.0%
ATGCTAGATGTGTAAATTGA+CGG - chr1.2:75381052-75381071 MS.gene34488:intron 30.0%
CTATGCAAGATGAAAAACAA+TGG - chr1.2:75381563-75381582 MS.gene34488:intron 30.0%
TAAAAAGAGTTATCTGACAG+TGG + chr1.2:75381830-75381849 None:intergenic 30.0%
TAAGCTGCATATTGAGTATT+TGG + chr1.2:75382265-75382284 None:intergenic 30.0%
TATGAGTGTTATCGAGATAA+AGG - chr1.2:75382555-75382574 MS.gene34488:CDS 30.0%
TGTAAATGCTCCTTCAAAAA+AGG - chr1.2:75380700-75380719 MS.gene34488:CDS 30.0%
TTATCTCGATAACACTCATA+TGG + chr1.2:75382555-75382574 None:intergenic 30.0%
TTGGGATTGAATAGTCTAAA+AGG + chr1.2:75381761-75381780 None:intergenic 30.0%
TTTAGACTATTCAATCCCAA+AGG - chr1.2:75381761-75381780 MS.gene34488:intron 30.0%
! GATTTTGCAATCGTTTGATA+AGG - chr1.2:75382425-75382444 MS.gene34488:CDS 30.0%
! GCATTTTCAATATACCCAAA+GGG + chr1.2:75380846-75380865 None:intergenic 30.0%
! TCATATGGACTTCATTTTCA+AGG + chr1.2:75382540-75382559 None:intergenic 30.0%
! TGCATTTTCAATATACCCAA+AGG + chr1.2:75380847-75380866 None:intergenic 30.0%
! TTACAATTCTCCTCATTTTC+TGG - chr1.2:75381332-75381351 MS.gene34488:intron 30.0%
!! ATAGGTTGATGCAAGATAAA+GGG + chr1.2:75380726-75380745 None:intergenic 30.0%
!!! CAAACATTTTTAGGTGTGTT+TGG - chr1.2:75381083-75381102 MS.gene34488:intron 30.0%
!!! GATTTTTTTAAGCTCTAGGT+TGG - chr1.2:75381362-75381381 MS.gene34488:CDS 30.0%
!!! TTTCTCCTCATTTTTTCTTC+TGG - chr1.2:75381726-75381745 MS.gene34488:intron 30.0%
AAGACGAAGTTTAGCAACTT+TGG + chr1.2:75382194-75382213 None:intergenic 35.0%
AATGAACAATTGGCCAAGAA+AGG + chr1.2:75381468-75381487 None:intergenic 35.0%
ACAGAACAGACATTTGTGTT+TGG + chr1.2:75381305-75381324 None:intergenic 35.0%
AGACATTTGTGTTTGGATTG+AGG + chr1.2:75381298-75381317 None:intergenic 35.0%
AGACGAAGTTTAGCAACTTT+GGG + chr1.2:75382193-75382212 None:intergenic 35.0%
AGATGAAAGTTTCCTTGATG+AGG + chr1.2:75381545-75381564 None:intergenic 35.0%
AGCTGCATATTGAGTATTTG+GGG + chr1.2:75382263-75382282 None:intergenic 35.0%
ATATTGAGTATTTGGGGACA+AGG + chr1.2:75382257-75382276 None:intergenic 35.0%
ATCAAAGGAACCAGAAAATG+AGG + chr1.2:75381345-75381364 None:intergenic 35.0%
ATGAAAGTTTCCTTGATGAG+GGG + chr1.2:75381543-75381562 None:intergenic 35.0%
ATGTATACGAATTCCGCATT+TGG + chr1.2:75382394-75382413 None:intergenic 35.0%
CAACCTATCATTATCGACAA+TGG - chr1.2:75380738-75380757 MS.gene34488:CDS 35.0%
CATTATCGACAATGGCAAAA+AGG - chr1.2:75380746-75380765 MS.gene34488:CDS 35.0%
CATTGTTCTTTCTCCTTTCT+TGG - chr1.2:75381452-75381471 MS.gene34488:intron 35.0%
CTGCTAATAATAAGCCCTTT+GGG - chr1.2:75380829-75380848 MS.gene34488:CDS 35.0%
CTTCCTGTAGATTTATCTGT+CGG - chr1.2:75382325-75382344 MS.gene34488:intron 35.0%
GAAAAAATGAGGAGAAAGTG+AGG + chr1.2:75381723-75381742 None:intergenic 35.0%
GAAAATGCAGAGCTTTCAAT+TGG - chr1.2:75380858-75380877 MS.gene34488:CDS 35.0%
GACATTTATCTGCACCTTTA+TGG - chr1.2:75381029-75381048 MS.gene34488:intron 35.0%
GACATTTGTGTTTGGATTGA+GGG + chr1.2:75381297-75381316 None:intergenic 35.0%
GATGAAAGTTTCCTTGATGA+GGG + chr1.2:75381544-75381563 None:intergenic 35.0%
GCTATCCAGAAGAAAAAATG+AGG + chr1.2:75381734-75381753 None:intergenic 35.0%
GTTAAAACATGCAAGAGAGA+AGG + chr1.2:75381433-75381452 None:intergenic 35.0%
TACACATCTAGCATCCATAA+AGG + chr1.2:75381046-75381065 None:intergenic 35.0%
TAGATCTCTTGCCATTACTT+GGG - chr1.2:75380918-75380937 MS.gene34488:CDS 35.0%
TGCTAGATGTGTAAATTGAC+GGG - chr1.2:75381053-75381072 MS.gene34488:intron 35.0%
TGTTACAGAGGTTCAGATTT+GGG + chr1.2:75381797-75381816 None:intergenic 35.0%
TGTTTGTTTGGATCCAAATG+CGG - chr1.2:75382378-75382397 MS.gene34488:CDS 35.0%
TTCTCGAAGGAATAGAAGTT+AGG - chr1.2:75382602-75382621 MS.gene34488:CDS 35.0%
TTGCCATTGTCGATAATGAT+AGG + chr1.2:75380744-75380763 None:intergenic 35.0%
TTGGGTGTATAGTTTCCTTT+GGG + chr1.2:75381779-75381798 None:intergenic 35.0%
TTTGGGTGTATAGTTTCCTT+TGG + chr1.2:75381780-75381799 None:intergenic 35.0%
! GGTCACACTCAAACATTTTT+AGG - chr1.2:75381074-75381093 MS.gene34488:intron 35.0%
!! GATAGGTTGATGCAAGATAA+AGG + chr1.2:75380727-75380746 None:intergenic 35.0%
!! GTTGGTACTCTTTTGAAAGT+TGG - chr1.2:75382005-75382024 MS.gene34488:intron 35.0%
!!! AGATAAAGGGCCTTTTTTGA+AGG + chr1.2:75380713-75380732 None:intergenic 35.0%
!!! CATTTTTAGGTGTGTTTGGA+TGG - chr1.2:75381087-75381106 MS.gene34488:intron 35.0%
AAGGGCAATTTCTTTCTCGA+AGG - chr1.2:75382589-75382608 MS.gene34488:CDS 40.0%
ACACCGACAGATAAATCTAC+AGG + chr1.2:75382331-75382350 None:intergenic 40.0%
AGATCTCTTGCCATTACTTG+GGG - chr1.2:75380919-75380938 MS.gene34488:CDS 40.0%
AGGAATAGAAGTTAGGCCTA+AGG - chr1.2:75382609-75382628 MS.gene34488:CDS 40.0%
AGGGAGAAAATGATTCCAGA+CGG + chr1.2:75380642-75380661 None:intergenic 40.0%
AGGTCAGATAACAGAGTAGT+AGG - chr1.2:75382445-75382464 MS.gene34488:CDS 40.0%
AGTGTTATCGAGATAAAGGC+TGG - chr1.2:75382559-75382578 MS.gene34488:CDS 40.0%
ATCTGAGTTCACACTGTTGA+TGG - chr1.2:75381509-75381528 MS.gene34488:intron 40.0%
ATGGGAGAGTTCTTCAATTC+AGG - chr1.2:75382514-75382533 MS.gene34488:CDS 40.0%
ATTCCCGGTACAAGAGATAA+GGG + chr1.2:75381609-75381628 None:intergenic 40.0%
CGACAGATAAATCTACAGGA+AGG + chr1.2:75382327-75382346 None:intergenic 40.0%
CTAGATCTCTTGCCATTACT+TGG - chr1.2:75380917-75380936 MS.gene34488:CDS 40.0%
CTGTTACAGAGGTTCAGATT+TGG + chr1.2:75381798-75381817 None:intergenic 40.0%
GACAGGGTTTGAAGATTTAG+CGG - chr1.2:75380517-75380536 MS.gene34488:CDS 40.0%
GACGAAGTTTAGCAACTTTG+GGG + chr1.2:75382192-75382211 None:intergenic 40.0%
GCTGCTAATAATAAGCCCTT+TGG - chr1.2:75380828-75380847 MS.gene34488:CDS 40.0%
GTACAAGAGATAAGGGCTAA+CGG + chr1.2:75381602-75381621 None:intergenic 40.0%
TTAGCCCTTATCTCTTGTAC+CGG - chr1.2:75381602-75381621 MS.gene34488:intron 40.0%
TTCGTATACATCAGAGACAG+AGG - chr1.2:75382403-75382422 MS.gene34488:CDS 40.0%
TTGCTAAACTTCGTCTTGTG+TGG - chr1.2:75382197-75382216 MS.gene34488:CDS 40.0%
TTTAGGTGTGTTTGGATGGA+GGG - chr1.2:75381091-75381110 MS.gene34488:intron 40.0%
! AAGAAAAGCCAGTTGATTCC+CGG + chr1.2:75381624-75381643 None:intergenic 40.0%
! TATCTCGGCAACTTTTGTGT+TGG - chr1.2:75382159-75382178 MS.gene34488:intron 40.0%
!! TTTTAGGTGTGTTTGGATGG+AGG - chr1.2:75381090-75381109 MS.gene34488:intron 40.0%
AAAATGATTCCAGACGGCGT+CGG + chr1.2:75380636-75380655 None:intergenic 45.0%
AAATGAGGAGAAAGTGAGGG+AGG + chr1.2:75381719-75381738 None:intergenic 45.0%
AGGAAGGTTCTCAAACCCAT+AGG + chr1.2:75382311-75382330 None:intergenic 45.0%
ATAAAGGCTGGCGAGACAAA+GGG - chr1.2:75382571-75382590 MS.gene34488:CDS 45.0%
CTAAACTTCGTCTTGTGTGG+TGG - chr1.2:75382200-75382219 MS.gene34488:CDS 45.0%
GAACCTCTGTAACAGTGATG+TGG - chr1.2:75381803-75381822 MS.gene34488:intron 45.0%
GATTCCCGGTACAAGAGATA+AGG + chr1.2:75381610-75381629 None:intergenic 45.0%
GGAAACGACAGAGAATCTAC+CGG + chr1.2:75380588-75380607 None:intergenic 45.0%
GGGTTTGAAGATTTAGCGGA+AGG - chr1.2:75380521-75380540 MS.gene34488:CDS 45.0%
GTTGTCATCACCCCAAGTAA+TGG + chr1.2:75380932-75380951 None:intergenic 45.0%
GTTTCCTTGATGAGGGGAAT+AGG + chr1.2:75381537-75381556 None:intergenic 45.0%
TAGCCCTTATCTCTTGTACC+GGG - chr1.2:75381603-75381622 MS.gene34488:intron 45.0%
TGTGTTTGGATGGAGGGTTT+AGG - chr1.2:75381097-75381116 MS.gene34488:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG - chr1.2:75381101-75381120 MS.gene34488:intron 45.0%
!! GATTTATCTGTCGGTGTCGA+AGG - chr1.2:75382334-75382353 MS.gene34488:intron 45.0%
ACAGAGTAGTAGGATTGCCG+CGG - chr1.2:75382455-75382474 MS.gene34488:CDS 50.0%
AGTCGTACGAGACAGTATGG+TGG + chr1.2:75380555-75380574 None:intergenic 50.0%
ATGACAACCGCTACTGGAAC+TGG - chr1.2:75380944-75380963 MS.gene34488:CDS 50.0%
CACCTACCACTTCTCCAACT+AGG + chr1.2:75382481-75382500 None:intergenic 50.0%
CATACTGTCTCGTACGACTC+CGG - chr1.2:75380556-75380575 MS.gene34488:CDS 50.0%
CTAGTTGGAGAAGTGGTAGG+TGG - chr1.2:75382479-75382498 MS.gene34488:CDS 50.0%
CTCTTGTACCGGGAATCAAC+TGG - chr1.2:75381613-75381632 MS.gene34488:intron 50.0%
CTGGAATCCAGTTCCAGTAG+CGG + chr1.2:75380954-75380973 None:intergenic 50.0%
GAAAGTGAGGGAGGCTGAAA+TGG + chr1.2:75381710-75381729 None:intergenic 50.0%
GATAAAGGCTGGCGAGACAA+AGG - chr1.2:75382570-75382589 MS.gene34488:CDS 50.0%
GGACCACATCACTGTTACAG+AGG + chr1.2:75381809-75381828 None:intergenic 50.0%
GGATCCTATTCCCCTCATCA+AGG - chr1.2:75381530-75381549 MS.gene34488:intron 50.0%
GGCGGCATAAAGGAAAGTCT+TGG + chr1.2:75380609-75380628 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG - chr1.2:75381100-75381119 MS.gene34488:intron 50.0%
TGAGACGATAGAGTCGACGT+CGG + chr1.2:75380666-75380685 None:intergenic 50.0%
TGTGGTGGCTCGAAATTCGT+GGG - chr1.2:75382215-75382234 MS.gene34488:CDS 50.0%
TTGGAGAAGTGGTAGGTGGT+GGG - chr1.2:75382483-75382502 MS.gene34488:CDS 50.0%
TTGGATGGAGGGTTTAGGAG+GGG - chr1.2:75381102-75381121 MS.gene34488:intron 50.0%
! CGGCAACTTTTGTGTTGGAC+AGG - chr1.2:75382164-75382183 MS.gene34488:intron 50.0%
!! AGGTGGTGGGAGATTGAGAT+GGG - chr1.2:75382496-75382515 MS.gene34488:CDS 50.0%
!! TAGGTGGTGGGAGATTGAGA+TGG - chr1.2:75382495-75382514 MS.gene34488:CDS 50.0%
!! TTATCTGTCGGTGTCGAAGG+TGG - chr1.2:75382337-75382356 MS.gene34488:intron 50.0%
ACGATAGAGTCGACGTCGGA+AGG + chr1.2:75380662-75380681 None:intergenic 55.0%
CGATAGAGTCGACGTCGGAA+GGG + chr1.2:75380661-75380680 None:intergenic 55.0%
CGCTACTGGAACTGGATTCC+AGG - chr1.2:75380952-75380971 MS.gene34488:CDS 55.0%
CGGAGTCGTACGAGACAGTA+TGG + chr1.2:75380558-75380577 None:intergenic 55.0%
GAGAATCTACCGGCGTCAAC+CGG + chr1.2:75380578-75380597 None:intergenic 55.0%
GGCCTAGTTGGAGAAGTGGT+AGG - chr1.2:75382476-75382495 MS.gene34488:CDS 55.0%
GTGTGGTGGCTCGAAATTCG+TGG - chr1.2:75382214-75382233 MS.gene34488:CDS 55.0%
GTTGGAGAAGTGGTAGGTGG+TGG - chr1.2:75382482-75382501 MS.gene34488:CDS 55.0%
TGGATGGAGGGTTTAGGAGG+GGG - chr1.2:75381103-75381122 MS.gene34488:intron 55.0%
! ATTCCAGACGGCGTCGGAAT+CGG + chr1.2:75380630-75380649 None:intergenic 55.0%
CCACTTCTCCAACTAGGCCG+CGG + chr1.2:75382475-75382494 None:intergenic 60.0%
CGTCGGAATCGGCGGCATAA+AGG + chr1.2:75380619-75380638 None:intergenic 60.0%
GAGGGTTTAGGAGGGGGGAA+GGG - chr1.2:75381109-75381128 MS.gene34488:intron 60.0%
GGATGGAGGGTTTAGGAGGG+GGG - chr1.2:75381104-75381123 MS.gene34488:intron 60.0%
GGGGTGATGACAACCGCTAC+TGG - chr1.2:75380938-75380957 MS.gene34488:CDS 60.0%
GTTTAGGAGGGGGGAAGGGA+GGG - chr1.2:75381113-75381132 MS.gene34488:intron 60.0%
TAGGATTGCCGCGGCCTAGT+TGG - chr1.2:75382464-75382483 MS.gene34488:CDS 60.0%
TTTAGGAGGGGGGAAGGGAG+GGG - chr1.2:75381114-75381133 MS.gene34488:intron 60.0%
CCGCGGCCTAGTTGGAGAAG+TGG - chr1.2:75382472-75382491 MS.gene34488:CDS 65.0%
CGTACGACTCCGGTTGACGC+CGG - chr1.2:75380566-75380585 MS.gene34488:CDS 65.0%
GGAGGGTTTAGGAGGGGGGA+AGG - chr1.2:75381108-75381127 MS.gene34488:intron 65.0%
GGTTTAGGAGGGGGGAAGGG+AGG - chr1.2:75381112-75381131 MS.gene34488:intron 65.0%
! CCAGACGGCGTCGGAATCGG+CGG + chr1.2:75380627-75380646 None:intergenic 70.0%
!! CCGCCGATTCCGACGCCGTC+TGG - chr1.2:75380624-75380643 MS.gene34488:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 75380515 75382642 75380515 ID=MS.gene34488
chr1.2 mRNA 75380515 75382642 75380515 ID=MS.gene34488.t1;Parent=MS.gene34488
chr1.2 exon 75382357 75382642 75382357 ID=MS.gene34488.t1.exon1;Parent=MS.gene34488.t1
chr1.2 CDS 75382357 75382642 75382357 ID=cds.MS.gene34488.t1;Parent=MS.gene34488.t1
chr1.2 exon 75382184 75382272 75382184 ID=MS.gene34488.t1.exon2;Parent=MS.gene34488.t1
chr1.2 CDS 75382184 75382272 75382184 ID=cds.MS.gene34488.t1;Parent=MS.gene34488.t1
chr1.2 exon 75381347 75381441 75381347 ID=MS.gene34488.t1.exon3;Parent=MS.gene34488.t1
chr1.2 CDS 75381347 75381441 75381347 ID=cds.MS.gene34488.t1;Parent=MS.gene34488.t1
chr1.2 exon 75380515 75380971 75380515 ID=MS.gene34488.t1.exon4;Parent=MS.gene34488.t1
chr1.2 CDS 75380515 75380971 75380515 ID=cds.MS.gene34488.t1;Parent=MS.gene34488.t1
Gene Sequence

>MS.gene34488

ATGACAGGGTTTGAAGATTTAGCGGAAGGATGCATTGCCACCATACTGTCTCGTACGACTCCGGTTGACGCCGGTAGATTCTCTGTCGTTTCCAAGACTTTCCTTTATGCCGCCGATTCCGACGCCGTCTGGAATCATTTTCTCCCTTCCGACGTCGACTCTATCGTCTCACAGTCATCTTCAGTTGTAAATGCTCCTTCAAAAAAGGCCCTTTATCTTGCATCAACCTATCATTATCGACAATGGCAAAAAGGTATCATCAGAATTCATTGTTTTCTCATGTTAGGTAAGTGATTATTGATCATCATAATTCGCTGCTAATAATAAGCCCTTTGGGTATATTGAAAATGCAGAGCTTTCAATTGGACAGAAAGAGTGCAAAAAAGTGTTACATGCTTGCTGCTAGATCTCTTGCCATTACTTGGGGTGATGACAACCGCTACTGGAACTGGATTCCAGGTTTGATCTTAACTTTTCTATTTGTTTTATTTTAATTGCGTTCATTAACTTAATTGACATTTATCTGCACCTTTATGGATGCTAGATGTGTAAATTGACGGGTCACACTCAAACATTTTTAGGTGTGTTTGGATGGAGGGTTTAGGAGGGGGGAAGGGAGGGGAGAATTTACTTTTCATTTTTAAATTACGCACACTATGAAATATTTTTTAAAAAGTTAACATATTGCCATGATAAACAATCATATAATACTTCAATCACACTTAGTTTATTTTAAAAAAACATCTTACATAATCTGTAATTTAAAAAAGAAAAGTAAACCCTCAATCCAAACACAAATGTCTGTTCTGTTTCTCTCTTACAATTCTCCTCATTTTCTGGTTCCTTTGATTTTTTTAAGCTCTAGGTTGGCCAATTTTTTTTCCTTTCATTTTCTCACTTTTATTGGTTTCTTTACCTTCTCTCTTGCATGTTTTAACATTGTTCTTTCTCCTTTCTTGGCCAATTGTTCATTCCATTTCATTGAATGTTTCATATCTGAGTTCACACTGTTGATGGATCCTATTCCCCTCATCAAGGAAACTTTCATCTATGCAAGATGAAAAACAATGGGAGATTGAATATGCCGTTAGCCCTTATCTCTTGTACCGGGAATCAACTGGCTTTTCTTCTATGAAAGATGAAAAAACATGAGAAGTTGAATATGCATAAAGAAGTTAAATGAAAATATTTTCCATTTCAGCCTCCCTCACTTTCTCCTCATTTTTTCTTCTGGATAGCACTTCCTTTTAGACTATTCAATCCCAAAGGAAACTATACACCCAAATCTGAACCTCTGTAACAGTGATGTGGTCCACTGTCAGATAACTCTTTTTATAGATAACAAACGATATAACTAACTTATTAAATGAGAAGTTTATCATAATCGATTTCACTTGGAAATAATTTAGCTATCATTGGTACTATATATGATAATTGATGTTTTTATTAGTTGAGTTGTTTCAAAGTTTTTTTGGTAAAAATATTTTGCTGTTGGTACTCTTTTGAAAGTTGGAAACTTCGATTCAACTTTGAAATTTTAGTTGATGAGCTTGCATTGTTAGTATATCTACATGTATATAAATATTCCATTTTTGATGTTATGAATCCTTTTCAACTTTTTTTTCTTCTCAATTCTTGTATTCTTATCTCGGCAACTTTTGTGTTGGACAGGTTCCCCAAAGTTGCTAAACTTCGTCTTGTGTGGTGGCTCGAAATTCGTGGGATGATTAACAATCTTTCCTTGTCCCCAAATACTCAATATGCAGCTTATCTTGTGTTCAAAATGATTGATTCCTATGGGTTTGAGAACCTTCCTGTAGATTTATCTGTCGGTGTCGAAGGTGGCCATAGTAGCACTAAAATTGTTTGTTTGGATCCAAATGCGGAATTCGTATACATCAGAGACAGAGGATTTTGCAATCGTTTGATAAGGTCAGATAACAGAGTAGTAGGATTGCCGCGGCCTAGTTGGAGAAGTGGTAGGTGGTGGGAGATTGAGATGGGAGAGTTCTTCAATTCAGGCCTTGAAAATGAAGTCCATATGAGTGTTATCGAGATAAAGGCTGGCGAGACAAAGGGCAATTTCTTTCTCGAAGGAATAGAAGTTAGGCCTAAGGTAGACAATTAA
Protein sequence

>MS.gene34488.t1

MTGFEDLAEGCIATILSRTTPVDAGRFSVVSKTFLYAADSDAVWNHFLPSDVDSIVSQSSSVVNAPSKKALYLASTYHYRQWQKGIIRIHCFLMLERVQKSVTCLLLDLLPLLGVMTTATGTGFQPPSLSPHFFFWIALPFRLFNPKGNYTPKSEPLFPKVAKLRLVWWLEIRGMINNLSLSPNTQYAAYLVFKMIDSYGFENLPVDLSVGVEGGHSSTKIVCLDPNAEFVYIRDRGFCNRLIRSDNRVVGLPRPSWRSGRWWEIEMGEFFNSGLENEVHMSVIEIKAGETKGNFFLEGIEVRPKVDN