Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009359.t1 | KEH32832.1 | 90.1 | 304 | 28 | 2 | 1 | 303 | 13 | 315 | 3.40E-152 | 547.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009359.t1 | Q9FLU7 | 36.8 | 302 | 132 | 8 | 5 | 303 | 3 | 248 | 1.9e-39 | 164.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009359.t1 | A0A072UT85 | 90.1 | 304 | 28 | 2 | 1 | 303 | 13 | 315 | 2.4e-152 | 547.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009359.t1 | MTR_3g006850 | 91.118 | 304 | 25 | 2 | 1 | 303 | 13 | 315 | 0.0 | 549 |
MS.gene009359.t1 | MTR_1g100597 | 63.787 | 301 | 79 | 6 | 3 | 303 | 2 | 272 | 1.14e-123 | 355 |
MS.gene009359.t1 | MTR_1g079370 | 59.667 | 300 | 82 | 7 | 5 | 303 | 4 | 265 | 2.84e-112 | 326 |
MS.gene009359.t1 | MTR_1g079180 | 60.667 | 300 | 79 | 6 | 5 | 303 | 4 | 265 | 3.16e-112 | 326 |
MS.gene009359.t1 | MTR_1g079230 | 59.667 | 300 | 90 | 5 | 5 | 303 | 4 | 273 | 8.99e-111 | 322 |
MS.gene009359.t1 | MTR_1g079260 | 57.756 | 303 | 94 | 7 | 3 | 303 | 2 | 272 | 6.78e-108 | 315 |
MS.gene009359.t1 | MTR_1g079460 | 57.616 | 302 | 90 | 5 | 5 | 305 | 4 | 268 | 9.55e-106 | 309 |
MS.gene009359.t1 | MTR_1g079850 | 58.224 | 304 | 100 | 6 | 3 | 303 | 2 | 281 | 1.58e-104 | 307 |
MS.gene009359.t1 | MTR_1g079200 | 58.940 | 302 | 80 | 7 | 5 | 303 | 4 | 264 | 1.14e-103 | 304 |
MS.gene009359.t1 | MTR_3g452600 | 55.776 | 303 | 89 | 6 | 5 | 305 | 10 | 269 | 1.96e-102 | 301 |
MS.gene009359.t1 | MTR_1g100613 | 61.217 | 263 | 75 | 6 | 21 | 282 | 5 | 241 | 4.28e-97 | 286 |
MS.gene009359.t1 | MTR_1g026510 | 54.426 | 305 | 112 | 6 | 3 | 303 | 2 | 283 | 2.23e-95 | 284 |
MS.gene009359.t1 | MTR_1g079380 | 58.000 | 300 | 87 | 7 | 5 | 303 | 4 | 265 | 1.82e-94 | 282 |
MS.gene009359.t1 | MTR_1g079250 | 55.082 | 305 | 105 | 6 | 3 | 303 | 2 | 278 | 8.56e-94 | 280 |
MS.gene009359.t1 | MTR_3g450990 | 50.784 | 319 | 96 | 8 | 5 | 305 | 10 | 285 | 5.29e-88 | 265 |
MS.gene009359.t1 | MTR_2g079100 | 51.656 | 302 | 93 | 9 | 4 | 300 | 8 | 261 | 1.23e-84 | 256 |
MS.gene009359.t1 | MTR_1g079350 | 48.553 | 311 | 113 | 8 | 3 | 303 | 2 | 275 | 5.53e-81 | 246 |
MS.gene009359.t1 | MTR_1g079410 | 45.955 | 309 | 120 | 8 | 2 | 303 | 5 | 273 | 1.30e-75 | 233 |
MS.gene009359.t1 | MTR_1g079340 | 46.154 | 312 | 130 | 7 | 3 | 303 | 41 | 325 | 1.12e-72 | 227 |
MS.gene009359.t1 | MTR_7g096300 | 51.178 | 297 | 94 | 9 | 3 | 293 | 2 | 253 | 2.26e-72 | 237 |
MS.gene009359.t1 | MTR_1g079140 | 44.373 | 311 | 144 | 12 | 5 | 303 | 13 | 306 | 1.21e-64 | 206 |
MS.gene009359.t1 | MTR_1g079400 | 40.065 | 307 | 143 | 8 | 2 | 303 | 9 | 279 | 2.40e-58 | 189 |
MS.gene009359.t1 | MTR_1g076870 | 66.000 | 150 | 31 | 5 | 143 | 285 | 2 | 138 | 3.78e-58 | 183 |
MS.gene009359.t1 | MTR_1g078470 | 49.048 | 210 | 68 | 4 | 94 | 303 | 14 | 184 | 4.63e-52 | 169 |
MS.gene009359.t1 | MTR_7g112550 | 39.735 | 302 | 148 | 8 | 8 | 303 | 10 | 283 | 8.62e-51 | 169 |
MS.gene009359.t1 | MTR_1g079350 | 56.494 | 154 | 50 | 3 | 3 | 152 | 2 | 142 | 1.03e-45 | 154 |
MS.gene009359.t1 | MTR_1g083580 | 34.754 | 305 | 162 | 8 | 5 | 303 | 8 | 281 | 4.03e-43 | 149 |
MS.gene009359.t1 | MTR_1g079240 | 42.152 | 223 | 81 | 5 | 84 | 303 | 2 | 179 | 4.28e-41 | 141 |
MS.gene009359.t1 | MTR_7g112560 | 33.221 | 298 | 153 | 9 | 8 | 303 | 4 | 257 | 1.72e-40 | 142 |
MS.gene009359.t1 | MTR_7g096310 | 53.147 | 143 | 48 | 3 | 61 | 201 | 38 | 163 | 3.85e-35 | 125 |
MS.gene009359.t1 | MTR_4g023570 | 32.119 | 302 | 139 | 9 | 8 | 307 | 4 | 241 | 7.19e-35 | 127 |
MS.gene009359.t1 | MTR_2g042540 | 62.857 | 105 | 36 | 2 | 4 | 107 | 3 | 105 | 2.96e-34 | 122 |
MS.gene009359.t1 | MTR_3g058640 | 51.200 | 125 | 36 | 1 | 143 | 267 | 7 | 106 | 1.54e-32 | 116 |
MS.gene009359.t1 | MTR_1g078460 | 65.909 | 88 | 27 | 1 | 4 | 91 | 66 | 150 | 5.42e-31 | 114 |
MS.gene009359.t1 | MTR_1g079210 | 48.507 | 134 | 57 | 3 | 144 | 276 | 7 | 129 | 8.38e-29 | 108 |
MS.gene009359.t1 | MTR_1g079130 | 38.424 | 203 | 107 | 7 | 105 | 303 | 1 | 189 | 1.73e-27 | 106 |
MS.gene009359.t1 | MTR_0113s0040 | 26.636 | 214 | 128 | 6 | 2 | 201 | 19 | 217 | 3.83e-16 | 77.4 |
MS.gene009359.t1 | MTR_7g103380 | 22.973 | 222 | 146 | 5 | 1 | 210 | 15 | 223 | 6.23e-15 | 74.3 |
MS.gene009359.t1 | MTR_1g079220 | 44.318 | 88 | 24 | 2 | 180 | 267 | 1 | 63 | 5.57e-14 | 66.6 |
MS.gene009359.t1 | MTR_1g101390 | 30.968 | 155 | 90 | 5 | 7 | 159 | 30 | 169 | 2.62e-13 | 69.3 |
MS.gene009359.t1 | MTR_4g102770 | 29.936 | 157 | 94 | 4 | 7 | 161 | 21 | 163 | 3.53e-13 | 68.9 |
MS.gene009359.t1 | MTR_0002s0020 | 24.561 | 228 | 140 | 7 | 1 | 210 | 18 | 231 | 4.75e-12 | 65.9 |
MS.gene009359.t1 | MTR_1g079390 | 62.000 | 50 | 17 | 2 | 249 | 298 | 8 | 55 | 1.20e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009359.t1 | AT2G02360 | 35.855 | 304 | 144 | 8 | 3 | 302 | 12 | 268 | 7.27e-50 | 167 |
MS.gene009359.t1 | AT1G80110 | 37.540 | 309 | 126 | 10 | 6 | 302 | 2 | 255 | 6.40e-49 | 164 |
MS.gene009359.t1 | AT1G56250 | 38.614 | 303 | 154 | 10 | 8 | 303 | 4 | 281 | 1.84e-45 | 155 |
MS.gene009359.t1 | AT2G02230 | 32.919 | 322 | 173 | 10 | 5 | 303 | 32 | 333 | 6.03e-45 | 156 |
MS.gene009359.t1 | AT2G02240 | 34.106 | 302 | 153 | 8 | 3 | 302 | 59 | 316 | 5.64e-42 | 147 |
MS.gene009359.t1 | AT2G02350 | 33.224 | 304 | 156 | 9 | 3 | 302 | 22 | 282 | 8.51e-42 | 146 |
MS.gene009359.t1 | AT1G56240 | 37.086 | 302 | 158 | 10 | 8 | 302 | 4 | 280 | 1.38e-41 | 145 |
MS.gene009359.t1 | AT1G09155 | 36.570 | 309 | 152 | 11 | 8 | 303 | 3 | 280 | 1.45e-41 | 145 |
MS.gene009359.t1 | AT2G02340 | 32.686 | 309 | 158 | 10 | 3 | 302 | 34 | 301 | 6.73e-41 | 144 |
MS.gene009359.t1 | AT2G02250 | 32.000 | 300 | 159 | 9 | 5 | 302 | 47 | 303 | 1.49e-39 | 141 |
MS.gene009359.t1 | AT2G02310 | 31.803 | 305 | 161 | 10 | 3 | 303 | 43 | 304 | 1.60e-38 | 138 |
MS.gene009359.t1 | AT2G02320 | 32.154 | 311 | 161 | 11 | 4 | 309 | 39 | 304 | 4.95e-35 | 129 |
MS.gene009359.t1 | AT5G24560 | 36.816 | 201 | 98 | 7 | 5 | 201 | 3 | 178 | 3.56e-31 | 116 |
MS.gene009359.t1 | AT2G02300 | 30.323 | 310 | 147 | 10 | 3 | 303 | 32 | 281 | 4.44e-29 | 113 |
MS.gene009359.t1 | AT2G02350 | 30.233 | 172 | 89 | 5 | 135 | 302 | 21 | 165 | 8.38e-16 | 74.3 |
MS.gene009359.t1 | AT3G53000 | 24.891 | 229 | 145 | 7 | 1 | 217 | 17 | 230 | 1.27e-14 | 73.6 |
MS.gene009359.t1 | AT3G61060 | 27.097 | 155 | 96 | 5 | 7 | 159 | 27 | 166 | 8.97e-14 | 70.9 |
MS.gene009359.t1 | AT1G63090 | 25.778 | 225 | 133 | 9 | 1 | 209 | 22 | 228 | 4.55e-13 | 68.9 |
MS.gene009359.t1 | AT3G61060 | 25.161 | 155 | 100 | 4 | 7 | 159 | 27 | 167 | 6.59e-13 | 68.2 |
MS.gene009359.t1 | AT1G12710 | 24.107 | 224 | 138 | 8 | 1 | 209 | 24 | 230 | 4.87e-12 | 65.9 |
MS.gene009359.t1 | AT5G52120 | 24.336 | 226 | 138 | 7 | 4 | 210 | 20 | 231 | 5.40e-12 | 65.9 |
Find 81 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAATTCAGAGCTTTAAAT+TGG | 0.211874 | 3.2:+1805242 | MS.gene009359:intron |
TCTTTATTGCGTGACGCGTT+TGG | 0.271431 | 3.2:-1806720 | None:intergenic |
CTGCTGATTCCGACGCTGTT+TGG | 0.274846 | 3.2:+1804954 | MS.gene009359:CDS |
AGCCGCATACCGAGTATTTC+GGG | 0.278643 | 3.2:-1806589 | None:intergenic |
AGGCCTAAAGGTGGAAAATT+AGG | 0.306982 | 3.2:+1806990 | MS.gene009359:CDS |
AATGAGTGTTGTCGAGAAAT+TGG | 0.309455 | 3.2:+1806920 | MS.gene009359:CDS |
TGCCAACGCTCCCACCAAAA+AGG | 0.326568 | 3.2:+1805039 | MS.gene009359:CDS |
AGGCCATACCCGAGTGTAAT+AGG | 0.331870 | 3.2:+1806810 | MS.gene009359:CDS |
CACCCATCGCTTCTCATACT+AGG | 0.340594 | 3.2:-1806843 | None:intergenic |
ATTTCTCGACAACACTCATT+TGG | 0.340801 | 3.2:-1806917 | None:intergenic |
CGACCATGATTGATGATGAT+TGG | 0.342960 | 3.2:-1805088 | None:intergenic |
AAGCCGCATACCGAGTATTT+CGG | 0.344265 | 3.2:-1806590 | None:intergenic |
GCAAACAGTACGACGTTTGT+AGG | 0.364009 | 3.2:-1806766 | None:intergenic |
ATGCAAAGCTTAGCGACTTC+AGG | 0.370688 | 3.2:-1806519 | None:intergenic |
AAGGGAAATTTCTTTCTTGA+AGG | 0.378106 | 3.2:+1806957 | MS.gene009359:CDS |
TTCAAGATGATTGATGACTA+TGG | 0.395723 | 3.2:+1806621 | MS.gene009359:CDS |
TAGCACTAAATCCGTCTGTT+TGG | 0.402920 | 3.2:+1806695 | MS.gene009359:CDS |
TTCTTGAAGGAATAGAAGTT+AGG | 0.408541 | 3.2:+1806970 | MS.gene009359:CDS |
GTGTTCTCGCTTAAAATTCG+TGG | 0.423796 | 3.2:+1806543 | MS.gene009359:CDS |
GAGAGTCTGCAAACATCAAC+AGG | 0.436594 | 3.2:-1804905 | None:intergenic |
GGATTCATATGAATGATTCC+AGG | 0.439610 | 3.2:+1805382 | MS.gene009359:CDS |
ATGGCTGAGATGCATCCTTC+CGG | 0.445419 | 3.2:-1804866 | None:intergenic |
TTGGAACCACTTGCTCCCTT+CGG | 0.446640 | 3.2:+1804973 | MS.gene009359:CDS |
GACCATGATTGATGATGATT+GGG | 0.448096 | 3.2:-1805087 | None:intergenic |
GCAAATGTCCCGGTCCTAGA+TGG | 0.460524 | 3.2:+1806787 | MS.gene009359:CDS |
CACCTTCTACATCAATTGAT+AGG | 0.470721 | 3.2:-1806665 | None:intergenic |
CTCGGGTATGGCCTCCATCT+AGG | 0.471641 | 3.2:-1806801 | None:intergenic |
TATCAGATAGAGCGAGATAG+AGG | 0.473412 | 3.2:-1805063 | None:intergenic |
CGCCCTAGTATGAGAAGCGA+TGG | 0.476146 | 3.2:+1806840 | MS.gene009359:CDS |
ATTGGAGAGTGGCAATAAGA+AGG | 0.476949 | 3.2:+1806938 | MS.gene009359:CDS |
GACCTATCAATTGATGTAGA+AGG | 0.477578 | 3.2:+1806663 | MS.gene009359:CDS |
CGCTGCAATCCTATTACACT+CGG | 0.477809 | 3.2:-1806819 | None:intergenic |
TTGGAGAGTGGCAATAAGAA+GGG | 0.493842 | 3.2:+1806939 | MS.gene009359:CDS |
GATGATAGAGTTAATGAGAC+GGG | 0.495408 | 3.2:-1804999 | None:intergenic |
CTCACCATTCATTGCGGTGA+TGG | 0.500991 | 3.2:+1805309 | MS.gene009359:CDS |
GCCACCATCACCGCAATGAA+TGG | 0.504191 | 3.2:-1805313 | None:intergenic |
ACCCATCGCTTCTCATACTA+GGG | 0.511060 | 3.2:-1806842 | None:intergenic |
ATTATGACATTGATAAAGAG+TGG | 0.514642 | 3.2:+1805361 | MS.gene009359:CDS |
GTATGGCCTCCATCTAGGAC+CGG | 0.515958 | 3.2:-1806796 | None:intergenic |
GGAATAGAAGTTAGGCCTAA+AGG | 0.521180 | 3.2:+1806978 | MS.gene009359:CDS |
ACATCAATTGATAGGTCCAT+AGG | 0.521400 | 3.2:-1806657 | None:intergenic |
GTGGGAGCGTTGGCAAGGGA+AGG | 0.528441 | 3.2:-1805031 | None:intergenic |
TGGGTGGTTGGAGATTGAGA+TGG | 0.532103 | 3.2:+1806860 | MS.gene009359:CDS |
GAGTTCAATTCAAGACTTGA+AGG | 0.533035 | 3.2:+1806885 | MS.gene009359:CDS |
AGCCCAATCATCATCAATCA+TGG | 0.539989 | 3.2:+1805085 | MS.gene009359:CDS |
TGGATTTGAGAATGAACCTA+TGG | 0.540096 | 3.2:+1806641 | MS.gene009359:CDS |
GGGTGGTTGGAGATTGAGAT+GGG | 0.540728 | 3.2:+1806861 | MS.gene009359:CDS |
TATGAGAAGCGATGGGTGGT+TGG | 0.542058 | 3.2:+1806848 | MS.gene009359:CDS |
AATCCTATTACACTCGGGTA+TGG | 0.542614 | 3.2:-1806813 | None:intergenic |
ACCATTCATTGCGGTGATGG+TGG | 0.550353 | 3.2:+1805312 | MS.gene009359:CDS |
TTCAGAGCTTTAAATTGGAT+AGG | 0.554237 | 3.2:+1805247 | MS.gene009359:intron |
CGTCGGAATCAGCAGCAGAA+AGG | 0.559078 | 3.2:-1804946 | None:intergenic |
TTTAAATTGGATAGGAAAAG+CGG | 0.567617 | 3.2:+1805255 | MS.gene009359:CDS |
TTTCCTTGTCCCGAAATACT+CGG | 0.571284 | 3.2:+1806580 | MS.gene009359:CDS |
AGGAGTCGTACGAGACAGAA+TGG | 0.572229 | 3.2:-1804885 | None:intergenic |
AAGGAAAGTCTTAGAAACAA+GGG | 0.585673 | 3.2:-1804927 | None:intergenic |
AAAGGAAAGTCTTAGAAACA+AGG | 0.587344 | 3.2:-1804928 | None:intergenic |
CATCATCAATCATGGTCGAA+AGG | 0.589028 | 3.2:+1805093 | MS.gene009359:CDS |
TTTGGTGGGAGCGTTGGCAA+GGG | 0.595797 | 3.2:-1805035 | None:intergenic |
AGATGATAGAGTTAATGAGA+CGG | 0.608457 | 3.2:-1805000 | None:intergenic |
CGCGTTTGGATCCAAACAGA+CGG | 0.612046 | 3.2:-1806706 | None:intergenic |
GGGAATCCGAAGGGAGCAAG+TGG | 0.615736 | 3.2:-1804979 | None:intergenic |
ATAAAGAAAGAACGTGCTCG+AGG | 0.617489 | 3.2:+1806736 | MS.gene009359:CDS |
CGTACTGTTTGCAAATGTCC+CGG | 0.619734 | 3.2:+1806777 | MS.gene009359:CDS |
TATGGCCTCCATCTAGGACC+GGG | 0.622013 | 3.2:-1806795 | None:intergenic |
AGACGGATTTAGTGCTACAA+TGG | 0.632435 | 3.2:-1806689 | None:intergenic |
GTCCCGAAATACTCGGTATG+CGG | 0.633122 | 3.2:+1806587 | MS.gene009359:CDS |
ATCAGATAGAGCGAGATAGA+GGG | 0.636487 | 3.2:-1805062 | None:intergenic |
ATAGAAGTTAGGCCTAAAGG+TGG | 0.643863 | 3.2:+1806981 | MS.gene009359:CDS |
TAATGAGACGGGAATCCGAA+GGG | 0.645707 | 3.2:-1804988 | None:intergenic |
ATACCGAGTATTTCGGGACA+AGG | 0.650354 | 3.2:-1806583 | None:intergenic |
AATGTCCCGGTCCTAGATGG+AGG | 0.653167 | 3.2:+1806790 | MS.gene009359:CDS |
CTATCAATTGATGTAGAAGG+TGG | 0.658482 | 3.2:+1806666 | MS.gene009359:CDS |
CAAGTGGTTCCAAACAGCGT+CGG | 0.661303 | 3.2:-1804963 | None:intergenic |
TTAATGAGACGGGAATCCGA+AGG | 0.663113 | 3.2:-1804989 | None:intergenic |
GCCCTAGTATGAGAAGCGAT+GGG | 0.672039 | 3.2:+1806841 | MS.gene009359:CDS |
GTTGTCGAGAAATTGGAGAG+TGG | 0.680092 | 3.2:+1806927 | MS.gene009359:CDS |
CTAGTATGAGAAGCGATGGG+TGG | 0.686490 | 3.2:+1806844 | MS.gene009359:CDS |
GCTGCAATCCTATTACACTC+GGG | 0.696916 | 3.2:-1806818 | None:intergenic |
AGATCTCTCACCATTCATTG+CGG | 0.710070 | 3.2:+1805303 | MS.gene009359:CDS |
AGTGATGATAGTGATGATAG+CGG | 0.780024 | 3.2:+1805336 | MS.gene009359:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTTTTAATCAATTGTTA+AGG | + | chr3.2:1805172-1805191 | MS.gene009359:intron | 10.0% |
!! | AAAAAAAAAAAAAACTAACC+TGG | - | chr3.2:1805403-1805422 | None:intergenic | 15.0% |
!! | CAAATATTGATATATTTAGA+GGG | - | chr3.2:1805579-1805598 | None:intergenic | 15.0% |
!! | TCAAATATTGATATATTTAG+AGG | - | chr3.2:1805580-1805599 | None:intergenic | 15.0% |
!!! | AAAACCTAAAAGAATATTTT+TGG | - | chr3.2:1805613-1805632 | None:intergenic | 15.0% |
!!! | AAAACCTAAGAAATATTTTA+GGG | + | chr3.2:1805726-1805745 | MS.gene009359:intron | 15.0% |
!!! | AAAATATTCTTTTAGGTTTT+TGG | + | chr3.2:1805613-1805632 | MS.gene009359:intron | 15.0% |
!!! | ATTTGTGAATCAATTTTTTA+TGG | + | chr3.2:1805808-1805827 | MS.gene009359:intron | 15.0% |
!!! | TTTGTGAATCAATTTTTTAT+GGG | + | chr3.2:1805809-1805828 | MS.gene009359:intron | 15.0% |
!! | AACCTTTATGAATACTAAAT+TGG | + | chr3.2:1805535-1805554 | MS.gene009359:intron | 20.0% |
!! | ACCTTTATGAATACTAAATT+GGG | + | chr3.2:1805536-1805555 | MS.gene009359:intron | 20.0% |
!! | ATAATAGTATCATTAACACA+AGG | - | chr3.2:1805429-1805448 | None:intergenic | 20.0% |
!! | ATCAAATGTTGGTATATTTA+AGG | + | chr3.2:1805757-1805776 | MS.gene009359:intron | 20.0% |
!! | CAGTGAATATTAATGTTATA+TGG | + | chr3.2:1806074-1806093 | MS.gene009359:intron | 20.0% |
!! | CATATAACATTAATATTCAC+TGG | - | chr3.2:1806076-1806095 | None:intergenic | 20.0% |
!! | CCTAATATTTAAGAAATTCA+CGG | - | chr3.2:1805134-1805153 | None:intergenic | 20.0% |
!! | CTAGTATATAATATATAGTG+TGG | + | chr3.2:1806036-1806055 | MS.gene009359:intron | 20.0% |
!! | TCAAATGTTGGTATATTTAA+GGG | + | chr3.2:1805758-1805777 | MS.gene009359:intron | 20.0% |
!!! | AAACCTAAGAAATATTTTAG+GGG | + | chr3.2:1805727-1805746 | MS.gene009359:intron | 20.0% |
!!! | AATTGATTCACAAATTTAGT+AGG | - | chr3.2:1805803-1805822 | None:intergenic | 20.0% |
!!! | ATTGATTCACAAATTTAGTA+GGG | - | chr3.2:1805802-1805821 | None:intergenic | 20.0% |
!!! | ATTTCATGGATGAAATTTTT+TGG | - | chr3.2:1805644-1805663 | None:intergenic | 20.0% |
!!! | CAAAACCTAAGAAATATTTT+AGG | + | chr3.2:1805725-1805744 | MS.gene009359:intron | 20.0% |
!!! | CATAGATGAAATTTTCTAAA+GGG | + | chr3.2:1805700-1805719 | MS.gene009359:intron | 20.0% |
!!! | TCATAGATGAAATTTTCTAA+AGG | + | chr3.2:1805699-1805718 | MS.gene009359:intron | 20.0% |
! | ACCCAATTTAGTATTCATAA+AGG | - | chr3.2:1805540-1805559 | None:intergenic | 25.0% |
! | ATTATGACATTGATAAAGAG+TGG | + | chr3.2:1805361-1805380 | MS.gene009359:CDS | 25.0% |
! | ATTCATGTGTAAGTTAACTT+TGG | - | chr3.2:1806254-1806273 | None:intergenic | 25.0% |
! | CAAATGTTGGTATATTTAAG+GGG | + | chr3.2:1805759-1805778 | MS.gene009359:intron | 25.0% |
! | CCGTGAATTTCTTAAATATT+AGG | + | chr3.2:1805131-1805150 | MS.gene009359:intron | 25.0% |
! | CTCTGAATTTCATATATTCA+AGG | - | chr3.2:1805234-1805253 | None:intergenic | 25.0% |
! | GAATATTTATTTGCATAGTG+TGG | + | chr3.2:1806116-1806135 | MS.gene009359:intron | 25.0% |
! | TAAAAGAGAATTATCAGAGA+GGG | - | chr3.2:1806303-1806322 | None:intergenic | 25.0% |
! | TATGTTAATGAAGCCATATT+GGG | - | chr3.2:1805468-1805487 | None:intergenic | 25.0% |
! | TGTAGATACGATAATAATGT+AGG | - | chr3.2:1806408-1806427 | None:intergenic | 25.0% |
! | TTAAAAGAGAATTATCAGAG+AGG | - | chr3.2:1806304-1806323 | None:intergenic | 25.0% |
! | TTATGTTAATGAAGCCATAT+TGG | - | chr3.2:1805469-1805488 | None:intergenic | 25.0% |
! | TTCATGTGTAAGTTAACTTT+GGG | - | chr3.2:1806253-1806272 | None:intergenic | 25.0% |
! | TTGTCTTTGCAATTATTTAC+AGG | + | chr3.2:1806493-1806512 | MS.gene009359:intron | 25.0% |
! | TTTAAATTGGATAGGAAAAG+CGG | + | chr3.2:1805255-1805274 | MS.gene009359:CDS | 25.0% |
!! | AATTGGGTTAGATATGTAAT+TGG | + | chr3.2:1805552-1805571 | MS.gene009359:intron | 25.0% |
!! | TGCTCCAAAAATATTCTTTT+AGG | + | chr3.2:1805606-1805625 | MS.gene009359:intron | 25.0% |
!! | TTTTTCACATATATGTCTGT+TGG | + | chr3.2:1805844-1805863 | MS.gene009359:intron | 25.0% |
!!! | AACCTAAGAAATATTTTAGG+GGG | + | chr3.2:1805728-1805747 | MS.gene009359:intron | 25.0% |
!!! | ATTTTGAGAGAAGCTATATA+TGG | - | chr3.2:1805923-1805942 | None:intergenic | 25.0% |
!!! | GATTTTGAGACATTAATCTA+TGG | - | chr3.2:1805901-1805920 | None:intergenic | 25.0% |
!!! | TGAAATTCAGAGCTTTAAAT+TGG | + | chr3.2:1805242-1805261 | MS.gene009359:intron | 25.0% |
AAAAGAGAATTATCAGAGAG+GGG | - | chr3.2:1806302-1806321 | None:intergenic | 30.0% | |
AAAGGAAAGTCTTAGAAACA+AGG | - | chr3.2:1804931-1804950 | None:intergenic | 30.0% | |
AAGGAAAGTCTTAGAAACAA+GGG | - | chr3.2:1804930-1804949 | None:intergenic | 30.0% | |
AAGGGAAATTTCTTTCTTGA+AGG | + | chr3.2:1806957-1806976 | MS.gene009359:CDS | 30.0% | |
AGAAATTCACGGTTATGAAA+AGG | - | chr3.2:1805123-1805142 | None:intergenic | 30.0% | |
AGATGATAGAGTTAATGAGA+CGG | - | chr3.2:1805003-1805022 | None:intergenic | 30.0% | |
ATATGGTTTGAGTGATAACA+TGG | + | chr3.2:1805954-1805973 | MS.gene009359:intron | 30.0% | |
GTATTATACTCCATATGTGA+TGG | + | chr3.2:1806431-1806450 | MS.gene009359:intron | 30.0% | |
TAGAATTCTGTTAGAAGACT+CGG | - | chr3.2:1806019-1806038 | None:intergenic | 30.0% | |
TATGGTTTGAGTGATAACAT+GGG | + | chr3.2:1805955-1805974 | MS.gene009359:intron | 30.0% | |
TGAAGCTCAATATTAGTGAT+GGG | + | chr3.2:1806275-1806294 | MS.gene009359:intron | 30.0% | |
TTCTTGAAGGAATAGAAGTT+AGG | + | chr3.2:1806970-1806989 | MS.gene009359:CDS | 30.0% | |
! | TTCAAGATGATTGATGACTA+TGG | + | chr3.2:1806621-1806640 | MS.gene009359:CDS | 30.0% |
!! | TTCAGAGCTTTAAATTGGAT+AGG | + | chr3.2:1805247-1805266 | MS.gene009359:intron | 30.0% |
!!! | CATATTGGGTTTTAAGTGAT+GGG | - | chr3.2:1805454-1805473 | None:intergenic | 30.0% |
!!! | TCATGGATGAAATTTTTTGG+AGG | - | chr3.2:1805641-1805660 | None:intergenic | 30.0% |
ACATCAATTGATAGGTCCAT+AGG | - | chr3.2:1806660-1806679 | None:intergenic | 35.0% | |
ATTTCTCGACAACACTCATT+TGG | - | chr3.2:1806920-1806939 | None:intergenic | 35.0% | |
CAAAATGAGAAGGCTACATA+TGG | + | chr3.2:1805937-1805956 | MS.gene009359:intron | 35.0% | |
CACCTTCTACATCAATTGAT+AGG | - | chr3.2:1806668-1806687 | None:intergenic | 35.0% | |
CCATCACTTAAAACCCAATA+TGG | + | chr3.2:1805452-1805471 | MS.gene009359:intron | 35.0% | |
CTATCAATTGATGTAGAAGG+TGG | + | chr3.2:1806666-1806685 | MS.gene009359:CDS | 35.0% | |
CTGAAGCTCAATATTAGTGA+TGG | + | chr3.2:1806274-1806293 | MS.gene009359:intron | 35.0% | |
GACCTATCAATTGATGTAGA+AGG | + | chr3.2:1806663-1806682 | MS.gene009359:CDS | 35.0% | |
GAGTTCAATTCAAGACTTGA+AGG | + | chr3.2:1806885-1806904 | MS.gene009359:CDS | 35.0% | |
GATGATAGAGTTAATGAGAC+GGG | - | chr3.2:1805002-1805021 | None:intergenic | 35.0% | |
GGATTCATATGAATGATTCC+AGG | + | chr3.2:1805382-1805401 | MS.gene009359:CDS | 35.0% | |
GTCCCCCTAAAATATTTCTT+AGG | - | chr3.2:1805733-1805752 | None:intergenic | 35.0% | |
GTGATTCATACCATCACATA+TGG | - | chr3.2:1806444-1806463 | None:intergenic | 35.0% | |
TAGCTTCTCTCAAAATGAGA+AGG | + | chr3.2:1805927-1805946 | MS.gene009359:intron | 35.0% | |
TAGGCTCATCAACTAAAGTT+TGG | - | chr3.2:1806389-1806408 | None:intergenic | 35.0% | |
TGGATTTGAGAATGAACCTA+TGG | + | chr3.2:1806641-1806660 | MS.gene009359:CDS | 35.0% | |
! | AATGAGTGTTGTCGAGAAAT+TGG | + | chr3.2:1806920-1806939 | MS.gene009359:CDS | 35.0% |
! | AGTGATGATAGTGATGATAG+CGG | + | chr3.2:1805336-1805355 | MS.gene009359:CDS | 35.0% |
! | GAAAGTTAGAAGCATGACAA+TGG | - | chr3.2:1806184-1806203 | None:intergenic | 35.0% |
! | TTGCCTAATTTTCCACCTTT+AGG | - | chr3.2:1806996-1807015 | None:intergenic | 35.0% |
!! | GACCATGATTGATGATGATT+GGG | - | chr3.2:1805090-1805109 | None:intergenic | 35.0% |
!!! | CCATATTGGGTTTTAAGTGA+TGG | - | chr3.2:1805455-1805474 | None:intergenic | 35.0% |
AATCCTATTACACTCGGGTA+TGG | - | chr3.2:1806816-1806835 | None:intergenic | 40.0% | |
ACTGCTCTACATTGAGAACA+GGG | - | chr3.2:1805671-1805690 | None:intergenic | 40.0% | |
AGATCTCTCACCATTCATTG+CGG | + | chr3.2:1805303-1805322 | MS.gene009359:CDS | 40.0% | |
AGCCCAATCATCATCAATCA+TGG | + | chr3.2:1805085-1805104 | MS.gene009359:CDS | 40.0% | |
AGGCCTAAAGGTGGAAAATT+AGG | + | chr3.2:1806990-1807009 | MS.gene009359:CDS | 40.0% | |
ATAAAGAAAGAACGTGCTCG+AGG | + | chr3.2:1806736-1806755 | MS.gene009359:CDS | 40.0% | |
ATAGAAGTTAGGCCTAAAGG+TGG | + | chr3.2:1806981-1807000 | MS.gene009359:CDS | 40.0% | |
ATCAGATAGAGCGAGATAGA+GGG | - | chr3.2:1805065-1805084 | None:intergenic | 40.0% | |
ATTGGAGAGTGGCAATAAGA+AGG | + | chr3.2:1806938-1806957 | MS.gene009359:CDS | 40.0% | |
CATCATCAATCATGGTCGAA+AGG | + | chr3.2:1805093-1805112 | MS.gene009359:CDS | 40.0% | |
GAGAACAGGGACTAATTTCA+TGG | - | chr3.2:1805658-1805677 | None:intergenic | 40.0% | |
GGAATAGAAGTTAGGCCTAA+AGG | + | chr3.2:1806978-1806997 | MS.gene009359:CDS | 40.0% | |
GGGGGACTAAAATCAAATGT+TGG | + | chr3.2:1805746-1805765 | MS.gene009359:intron | 40.0% | |
GTGTTCTCGCTTAAAATTCG+TGG | + | chr3.2:1806543-1806562 | MS.gene009359:CDS | 40.0% | |
TAGCACTAAATCCGTCTGTT+TGG | + | chr3.2:1806695-1806714 | MS.gene009359:CDS | 40.0% | |
TATCAGATAGAGCGAGATAG+AGG | - | chr3.2:1805066-1805085 | None:intergenic | 40.0% | |
TTGGAGAGTGGCAATAAGAA+GGG | + | chr3.2:1806939-1806958 | MS.gene009359:CDS | 40.0% | |
TTTCCTTGTCCCGAAATACT+CGG | + | chr3.2:1806580-1806599 | MS.gene009359:CDS | 40.0% | |
! | AGACGGATTTAGTGCTACAA+TGG | - | chr3.2:1806692-1806711 | None:intergenic | 40.0% |
! | GCTTTTGATGAATTTCCGGA+AGG | + | chr3.2:1804851-1804870 | MS.gene009359:CDS | 40.0% |
! | GGCAGAGCTACTCATATTTT+GGG | + | chr3.2:1805976-1805995 | MS.gene009359:intron | 40.0% |
! | GGCAGCTTTTGATGAATTTC+CGG | + | chr3.2:1804847-1804866 | MS.gene009359:CDS | 40.0% |
!! | AGAGCTACTCATATTTTGGG+AGG | + | chr3.2:1805979-1805998 | MS.gene009359:intron | 40.0% |
!! | AGCTACTCATATTTTGGGAG+GGG | + | chr3.2:1805981-1806000 | MS.gene009359:intron | 40.0% |
!! | CGACCATGATTGATGATGAT+TGG | - | chr3.2:1805091-1805110 | None:intergenic | 40.0% |
!! | GAGCTACTCATATTTTGGGA+GGG | + | chr3.2:1805980-1805999 | MS.gene009359:intron | 40.0% |
AAGCCGCATACCGAGTATTT+CGG | - | chr3.2:1806593-1806612 | None:intergenic | 45.0% | |
ACCCATCGCTTCTCATACTA+GGG | - | chr3.2:1806845-1806864 | None:intergenic | 45.0% | |
ATACCGAGTATTTCGGGACA+AGG | - | chr3.2:1806586-1806605 | None:intergenic | 45.0% | |
ATGCAAAGCTTAGCGACTTC+AGG | - | chr3.2:1806522-1806541 | None:intergenic | 45.0% | |
CACTGCTCTACATTGAGAAC+AGG | - | chr3.2:1805672-1805691 | None:intergenic | 45.0% | |
CGCTGCAATCCTATTACACT+CGG | - | chr3.2:1806822-1806841 | None:intergenic | 45.0% | |
CGTACTGTTTGCAAATGTCC+CGG | + | chr3.2:1806777-1806796 | MS.gene009359:CDS | 45.0% | |
GAGAGTCTGCAAACATCAAC+AGG | - | chr3.2:1804908-1804927 | None:intergenic | 45.0% | |
GCAAACAGTACGACGTTTGT+AGG | - | chr3.2:1806769-1806788 | None:intergenic | 45.0% | |
GCTGCAATCCTATTACACTC+GGG | - | chr3.2:1806821-1806840 | None:intergenic | 45.0% | |
GTTGTCGAGAAATTGGAGAG+TGG | + | chr3.2:1806927-1806946 | MS.gene009359:CDS | 45.0% | |
TAATGAGACGGGAATCCGAA+GGG | - | chr3.2:1804991-1805010 | None:intergenic | 45.0% | |
TCTTTATTGCGTGACGCGTT+TGG | - | chr3.2:1806723-1806742 | None:intergenic | 45.0% | |
TTAATGAGACGGGAATCCGA+AGG | - | chr3.2:1804992-1805011 | None:intergenic | 45.0% | |
TTCTGTTAGAAGACTCGGCA+TGG | - | chr3.2:1806014-1806033 | None:intergenic | 45.0% | |
! | GGGCAGAGCTACTCATATTT+TGG | + | chr3.2:1805975-1805994 | MS.gene009359:intron | 45.0% |
!! | AGATAGAGGGCCTTTTTGGT+GGG | - | chr3.2:1805052-1805071 | None:intergenic | 45.0% |
!!! | TATTTACTTATAATTTTTTT+TGG | - | chr3.2:1806209-1806228 | None:intergenic | 5.0% |
AGCCGCATACCGAGTATTTC+GGG | - | chr3.2:1806592-1806611 | None:intergenic | 50.0% | |
AGGAGTCGTACGAGACAGAA+TGG | - | chr3.2:1804888-1804907 | None:intergenic | 50.0% | |
AGGCCATACCCGAGTGTAAT+AGG | + | chr3.2:1806810-1806829 | MS.gene009359:CDS | 50.0% | |
ATGGCTGAGATGCATCCTTC+CGG | - | chr3.2:1804869-1804888 | None:intergenic | 50.0% | |
CAAGTGGTTCCAAACAGCGT+CGG | - | chr3.2:1804966-1804985 | None:intergenic | 50.0% | |
CACCCATCGCTTCTCATACT+AGG | - | chr3.2:1806846-1806865 | None:intergenic | 50.0% | |
CGCGTTTGGATCCAAACAGA+CGG | - | chr3.2:1806709-1806728 | None:intergenic | 50.0% | |
CTAGTATGAGAAGCGATGGG+TGG | + | chr3.2:1806844-1806863 | MS.gene009359:CDS | 50.0% | |
CTCACCATTCATTGCGGTGA+TGG | + | chr3.2:1805309-1805328 | MS.gene009359:CDS | 50.0% | |
GCCCTAGTATGAGAAGCGAT+GGG | + | chr3.2:1806841-1806860 | MS.gene009359:CDS | 50.0% | |
GGGTGGTTGGAGATTGAGAT+GGG | + | chr3.2:1806861-1806880 | MS.gene009359:CDS | 50.0% | |
GTCCCGAAATACTCGGTATG+CGG | + | chr3.2:1806587-1806606 | MS.gene009359:CDS | 50.0% | |
TATGAGAAGCGATGGGTGGT+TGG | + | chr3.2:1806848-1806867 | MS.gene009359:CDS | 50.0% | |
TGGGTGGTTGGAGATTGAGA+TGG | + | chr3.2:1806860-1806879 | MS.gene009359:CDS | 50.0% | |
TTAGAAGACTCGGCATGGAC+AGG | - | chr3.2:1806009-1806028 | None:intergenic | 50.0% | |
TTGGAACCACTTGCTCCCTT+CGG | + | chr3.2:1804973-1804992 | MS.gene009359:CDS | 50.0% | |
! | ACCATTCATTGCGGTGATGG+TGG | + | chr3.2:1805312-1805331 | MS.gene009359:CDS | 50.0% |
! | AGCGAGATAGAGGGCCTTTT+TGG | - | chr3.2:1805056-1805075 | None:intergenic | 50.0% |
! | GAGATAGAGGGCCTTTTTGG+TGG | - | chr3.2:1805053-1805072 | None:intergenic | 50.0% |
AATGTCCCGGTCCTAGATGG+AGG | + | chr3.2:1806790-1806809 | MS.gene009359:CDS | 55.0% | |
CGCCCTAGTATGAGAAGCGA+TGG | + | chr3.2:1806840-1806859 | MS.gene009359:CDS | 55.0% | |
CGTCGGAATCAGCAGCAGAA+AGG | - | chr3.2:1804949-1804968 | None:intergenic | 55.0% | |
GCAAATGTCCCGGTCCTAGA+TGG | + | chr3.2:1806787-1806806 | MS.gene009359:CDS | 55.0% | |
GCCACCATCACCGCAATGAA+TGG | - | chr3.2:1805316-1805335 | None:intergenic | 55.0% | |
TGCCAACGCTCCCACCAAAA+AGG | + | chr3.2:1805039-1805058 | MS.gene009359:CDS | 55.0% | |
! | GTATGGCCTCCATCTAGGAC+CGG | - | chr3.2:1806799-1806818 | None:intergenic | 55.0% |
! | TATGGCCTCCATCTAGGACC+GGG | - | chr3.2:1806798-1806817 | None:intergenic | 55.0% |
!! | CTGCTGATTCCGACGCTGTT+TGG | + | chr3.2:1804954-1804973 | MS.gene009359:CDS | 55.0% |
!! | TTTGGTGGGAGCGTTGGCAA+GGG | - | chr3.2:1805038-1805057 | None:intergenic | 55.0% |
!!! | TTTTGGTGGGAGCGTTGGCA+AGG | - | chr3.2:1805039-1805058 | None:intergenic | 55.0% |
CTCGGGTATGGCCTCCATCT+AGG | - | chr3.2:1806804-1806823 | None:intergenic | 60.0% | |
GGGAATCCGAAGGGAGCAAG+TGG | - | chr3.2:1804982-1805001 | None:intergenic | 60.0% | |
!! | GGCCTTTTTGGTGGGAGCGT+TGG | - | chr3.2:1805044-1805063 | None:intergenic | 60.0% |
!! | GTGGGAGCGTTGGCAAGGGA+AGG | - | chr3.2:1805034-1805053 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 1804842 | 1807025 | 1804842 | ID=MS.gene009359 |
chr3.2 | mRNA | 1804842 | 1807025 | 1804842 | ID=MS.gene009359.t1;Parent=MS.gene009359 |
chr3.2 | exon | 1804842 | 1805114 | 1804842 | ID=MS.gene009359.t1.exon1;Parent=MS.gene009359.t1 |
chr3.2 | CDS | 1804842 | 1805114 | 1804842 | ID=cds.MS.gene009359.t1;Parent=MS.gene009359.t1 |
chr3.2 | exon | 1805252 | 1805403 | 1805252 | ID=MS.gene009359.t1.exon2;Parent=MS.gene009359.t1 |
chr3.2 | CDS | 1805252 | 1805403 | 1805252 | ID=cds.MS.gene009359.t1;Parent=MS.gene009359.t1 |
chr3.2 | exon | 1806515 | 1807025 | 1806515 | ID=MS.gene009359.t1.exon3;Parent=MS.gene009359.t1 |
chr3.2 | CDS | 1806515 | 1807025 | 1806515 | ID=cds.MS.gene009359.t1;Parent=MS.gene009359.t1 |
Gene Sequence |
Protein sequence |