AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009359


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009359.t1 MTR_3g006850 91.118 304 25 2 1 303 13 315 0.0 549
MS.gene009359.t1 MTR_1g100597 63.787 301 79 6 3 303 2 272 1.14e-123 355
MS.gene009359.t1 MTR_1g079370 59.667 300 82 7 5 303 4 265 2.84e-112 326
MS.gene009359.t1 MTR_1g079180 60.667 300 79 6 5 303 4 265 3.16e-112 326
MS.gene009359.t1 MTR_1g079230 59.667 300 90 5 5 303 4 273 8.99e-111 322
MS.gene009359.t1 MTR_1g079260 57.756 303 94 7 3 303 2 272 6.78e-108 315
MS.gene009359.t1 MTR_1g079460 57.616 302 90 5 5 305 4 268 9.55e-106 309
MS.gene009359.t1 MTR_1g079850 58.224 304 100 6 3 303 2 281 1.58e-104 307
MS.gene009359.t1 MTR_1g079200 58.940 302 80 7 5 303 4 264 1.14e-103 304
MS.gene009359.t1 MTR_3g452600 55.776 303 89 6 5 305 10 269 1.96e-102 301
MS.gene009359.t1 MTR_1g100613 61.217 263 75 6 21 282 5 241 4.28e-97 286
MS.gene009359.t1 MTR_1g026510 54.426 305 112 6 3 303 2 283 2.23e-95 284
MS.gene009359.t1 MTR_1g079380 58.000 300 87 7 5 303 4 265 1.82e-94 282
MS.gene009359.t1 MTR_1g079250 55.082 305 105 6 3 303 2 278 8.56e-94 280
MS.gene009359.t1 MTR_3g450990 50.784 319 96 8 5 305 10 285 5.29e-88 265
MS.gene009359.t1 MTR_2g079100 51.656 302 93 9 4 300 8 261 1.23e-84 256
MS.gene009359.t1 MTR_1g079350 48.553 311 113 8 3 303 2 275 5.53e-81 246
MS.gene009359.t1 MTR_1g079410 45.955 309 120 8 2 303 5 273 1.30e-75 233
MS.gene009359.t1 MTR_1g079340 46.154 312 130 7 3 303 41 325 1.12e-72 227
MS.gene009359.t1 MTR_7g096300 51.178 297 94 9 3 293 2 253 2.26e-72 237
MS.gene009359.t1 MTR_1g079140 44.373 311 144 12 5 303 13 306 1.21e-64 206
MS.gene009359.t1 MTR_1g079400 40.065 307 143 8 2 303 9 279 2.40e-58 189
MS.gene009359.t1 MTR_1g076870 66.000 150 31 5 143 285 2 138 3.78e-58 183
MS.gene009359.t1 MTR_1g078470 49.048 210 68 4 94 303 14 184 4.63e-52 169
MS.gene009359.t1 MTR_7g112550 39.735 302 148 8 8 303 10 283 8.62e-51 169
MS.gene009359.t1 MTR_1g079350 56.494 154 50 3 3 152 2 142 1.03e-45 154
MS.gene009359.t1 MTR_1g083580 34.754 305 162 8 5 303 8 281 4.03e-43 149
MS.gene009359.t1 MTR_1g079240 42.152 223 81 5 84 303 2 179 4.28e-41 141
MS.gene009359.t1 MTR_7g112560 33.221 298 153 9 8 303 4 257 1.72e-40 142
MS.gene009359.t1 MTR_7g096310 53.147 143 48 3 61 201 38 163 3.85e-35 125
MS.gene009359.t1 MTR_4g023570 32.119 302 139 9 8 307 4 241 7.19e-35 127
MS.gene009359.t1 MTR_2g042540 62.857 105 36 2 4 107 3 105 2.96e-34 122
MS.gene009359.t1 MTR_3g058640 51.200 125 36 1 143 267 7 106 1.54e-32 116
MS.gene009359.t1 MTR_1g078460 65.909 88 27 1 4 91 66 150 5.42e-31 114
MS.gene009359.t1 MTR_1g079210 48.507 134 57 3 144 276 7 129 8.38e-29 108
MS.gene009359.t1 MTR_1g079130 38.424 203 107 7 105 303 1 189 1.73e-27 106
MS.gene009359.t1 MTR_0113s0040 26.636 214 128 6 2 201 19 217 3.83e-16 77.4
MS.gene009359.t1 MTR_7g103380 22.973 222 146 5 1 210 15 223 6.23e-15 74.3
MS.gene009359.t1 MTR_1g079220 44.318 88 24 2 180 267 1 63 5.57e-14 66.6
MS.gene009359.t1 MTR_1g101390 30.968 155 90 5 7 159 30 169 2.62e-13 69.3
MS.gene009359.t1 MTR_4g102770 29.936 157 94 4 7 161 21 163 3.53e-13 68.9
MS.gene009359.t1 MTR_0002s0020 24.561 228 140 7 1 210 18 231 4.75e-12 65.9
MS.gene009359.t1 MTR_1g079390 62.000 50 17 2 249 298 8 55 1.20e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009359.t1 AT2G02360 35.855 304 144 8 3 302 12 268 7.27e-50 167
MS.gene009359.t1 AT1G80110 37.540 309 126 10 6 302 2 255 6.40e-49 164
MS.gene009359.t1 AT1G56250 38.614 303 154 10 8 303 4 281 1.84e-45 155
MS.gene009359.t1 AT2G02230 32.919 322 173 10 5 303 32 333 6.03e-45 156
MS.gene009359.t1 AT2G02240 34.106 302 153 8 3 302 59 316 5.64e-42 147
MS.gene009359.t1 AT2G02350 33.224 304 156 9 3 302 22 282 8.51e-42 146
MS.gene009359.t1 AT1G56240 37.086 302 158 10 8 302 4 280 1.38e-41 145
MS.gene009359.t1 AT1G09155 36.570 309 152 11 8 303 3 280 1.45e-41 145
MS.gene009359.t1 AT2G02340 32.686 309 158 10 3 302 34 301 6.73e-41 144
MS.gene009359.t1 AT2G02250 32.000 300 159 9 5 302 47 303 1.49e-39 141
MS.gene009359.t1 AT2G02310 31.803 305 161 10 3 303 43 304 1.60e-38 138
MS.gene009359.t1 AT2G02320 32.154 311 161 11 4 309 39 304 4.95e-35 129
MS.gene009359.t1 AT5G24560 36.816 201 98 7 5 201 3 178 3.56e-31 116
MS.gene009359.t1 AT2G02300 30.323 310 147 10 3 303 32 281 4.44e-29 113
MS.gene009359.t1 AT2G02350 30.233 172 89 5 135 302 21 165 8.38e-16 74.3
MS.gene009359.t1 AT3G53000 24.891 229 145 7 1 217 17 230 1.27e-14 73.6
MS.gene009359.t1 AT3G61060 27.097 155 96 5 7 159 27 166 8.97e-14 70.9
MS.gene009359.t1 AT1G63090 25.778 225 133 9 1 209 22 228 4.55e-13 68.9
MS.gene009359.t1 AT3G61060 25.161 155 100 4 7 159 27 167 6.59e-13 68.2
MS.gene009359.t1 AT1G12710 24.107 224 138 8 1 209 24 230 4.87e-12 65.9
MS.gene009359.t1 AT5G52120 24.336 226 138 7 4 210 20 231 5.40e-12 65.9

Find 81 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTCAGAGCTTTAAAT+TGG 0.211874 3.2:+1805242 MS.gene009359:intron
TCTTTATTGCGTGACGCGTT+TGG 0.271431 3.2:-1806720 None:intergenic
CTGCTGATTCCGACGCTGTT+TGG 0.274846 3.2:+1804954 MS.gene009359:CDS
AGCCGCATACCGAGTATTTC+GGG 0.278643 3.2:-1806589 None:intergenic
AGGCCTAAAGGTGGAAAATT+AGG 0.306982 3.2:+1806990 MS.gene009359:CDS
AATGAGTGTTGTCGAGAAAT+TGG 0.309455 3.2:+1806920 MS.gene009359:CDS
TGCCAACGCTCCCACCAAAA+AGG 0.326568 3.2:+1805039 MS.gene009359:CDS
AGGCCATACCCGAGTGTAAT+AGG 0.331870 3.2:+1806810 MS.gene009359:CDS
CACCCATCGCTTCTCATACT+AGG 0.340594 3.2:-1806843 None:intergenic
ATTTCTCGACAACACTCATT+TGG 0.340801 3.2:-1806917 None:intergenic
CGACCATGATTGATGATGAT+TGG 0.342960 3.2:-1805088 None:intergenic
AAGCCGCATACCGAGTATTT+CGG 0.344265 3.2:-1806590 None:intergenic
GCAAACAGTACGACGTTTGT+AGG 0.364009 3.2:-1806766 None:intergenic
ATGCAAAGCTTAGCGACTTC+AGG 0.370688 3.2:-1806519 None:intergenic
AAGGGAAATTTCTTTCTTGA+AGG 0.378106 3.2:+1806957 MS.gene009359:CDS
TTCAAGATGATTGATGACTA+TGG 0.395723 3.2:+1806621 MS.gene009359:CDS
TAGCACTAAATCCGTCTGTT+TGG 0.402920 3.2:+1806695 MS.gene009359:CDS
TTCTTGAAGGAATAGAAGTT+AGG 0.408541 3.2:+1806970 MS.gene009359:CDS
GTGTTCTCGCTTAAAATTCG+TGG 0.423796 3.2:+1806543 MS.gene009359:CDS
GAGAGTCTGCAAACATCAAC+AGG 0.436594 3.2:-1804905 None:intergenic
GGATTCATATGAATGATTCC+AGG 0.439610 3.2:+1805382 MS.gene009359:CDS
ATGGCTGAGATGCATCCTTC+CGG 0.445419 3.2:-1804866 None:intergenic
TTGGAACCACTTGCTCCCTT+CGG 0.446640 3.2:+1804973 MS.gene009359:CDS
GACCATGATTGATGATGATT+GGG 0.448096 3.2:-1805087 None:intergenic
GCAAATGTCCCGGTCCTAGA+TGG 0.460524 3.2:+1806787 MS.gene009359:CDS
CACCTTCTACATCAATTGAT+AGG 0.470721 3.2:-1806665 None:intergenic
CTCGGGTATGGCCTCCATCT+AGG 0.471641 3.2:-1806801 None:intergenic
TATCAGATAGAGCGAGATAG+AGG 0.473412 3.2:-1805063 None:intergenic
CGCCCTAGTATGAGAAGCGA+TGG 0.476146 3.2:+1806840 MS.gene009359:CDS
ATTGGAGAGTGGCAATAAGA+AGG 0.476949 3.2:+1806938 MS.gene009359:CDS
GACCTATCAATTGATGTAGA+AGG 0.477578 3.2:+1806663 MS.gene009359:CDS
CGCTGCAATCCTATTACACT+CGG 0.477809 3.2:-1806819 None:intergenic
TTGGAGAGTGGCAATAAGAA+GGG 0.493842 3.2:+1806939 MS.gene009359:CDS
GATGATAGAGTTAATGAGAC+GGG 0.495408 3.2:-1804999 None:intergenic
CTCACCATTCATTGCGGTGA+TGG 0.500991 3.2:+1805309 MS.gene009359:CDS
GCCACCATCACCGCAATGAA+TGG 0.504191 3.2:-1805313 None:intergenic
ACCCATCGCTTCTCATACTA+GGG 0.511060 3.2:-1806842 None:intergenic
ATTATGACATTGATAAAGAG+TGG 0.514642 3.2:+1805361 MS.gene009359:CDS
GTATGGCCTCCATCTAGGAC+CGG 0.515958 3.2:-1806796 None:intergenic
GGAATAGAAGTTAGGCCTAA+AGG 0.521180 3.2:+1806978 MS.gene009359:CDS
ACATCAATTGATAGGTCCAT+AGG 0.521400 3.2:-1806657 None:intergenic
GTGGGAGCGTTGGCAAGGGA+AGG 0.528441 3.2:-1805031 None:intergenic
TGGGTGGTTGGAGATTGAGA+TGG 0.532103 3.2:+1806860 MS.gene009359:CDS
GAGTTCAATTCAAGACTTGA+AGG 0.533035 3.2:+1806885 MS.gene009359:CDS
AGCCCAATCATCATCAATCA+TGG 0.539989 3.2:+1805085 MS.gene009359:CDS
TGGATTTGAGAATGAACCTA+TGG 0.540096 3.2:+1806641 MS.gene009359:CDS
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 3.2:+1806861 MS.gene009359:CDS
TATGAGAAGCGATGGGTGGT+TGG 0.542058 3.2:+1806848 MS.gene009359:CDS
AATCCTATTACACTCGGGTA+TGG 0.542614 3.2:-1806813 None:intergenic
ACCATTCATTGCGGTGATGG+TGG 0.550353 3.2:+1805312 MS.gene009359:CDS
TTCAGAGCTTTAAATTGGAT+AGG 0.554237 3.2:+1805247 MS.gene009359:intron
CGTCGGAATCAGCAGCAGAA+AGG 0.559078 3.2:-1804946 None:intergenic
TTTAAATTGGATAGGAAAAG+CGG 0.567617 3.2:+1805255 MS.gene009359:CDS
TTTCCTTGTCCCGAAATACT+CGG 0.571284 3.2:+1806580 MS.gene009359:CDS
AGGAGTCGTACGAGACAGAA+TGG 0.572229 3.2:-1804885 None:intergenic
AAGGAAAGTCTTAGAAACAA+GGG 0.585673 3.2:-1804927 None:intergenic
AAAGGAAAGTCTTAGAAACA+AGG 0.587344 3.2:-1804928 None:intergenic
CATCATCAATCATGGTCGAA+AGG 0.589028 3.2:+1805093 MS.gene009359:CDS
TTTGGTGGGAGCGTTGGCAA+GGG 0.595797 3.2:-1805035 None:intergenic
AGATGATAGAGTTAATGAGA+CGG 0.608457 3.2:-1805000 None:intergenic
CGCGTTTGGATCCAAACAGA+CGG 0.612046 3.2:-1806706 None:intergenic
GGGAATCCGAAGGGAGCAAG+TGG 0.615736 3.2:-1804979 None:intergenic
ATAAAGAAAGAACGTGCTCG+AGG 0.617489 3.2:+1806736 MS.gene009359:CDS
CGTACTGTTTGCAAATGTCC+CGG 0.619734 3.2:+1806777 MS.gene009359:CDS
TATGGCCTCCATCTAGGACC+GGG 0.622013 3.2:-1806795 None:intergenic
AGACGGATTTAGTGCTACAA+TGG 0.632435 3.2:-1806689 None:intergenic
GTCCCGAAATACTCGGTATG+CGG 0.633122 3.2:+1806587 MS.gene009359:CDS
ATCAGATAGAGCGAGATAGA+GGG 0.636487 3.2:-1805062 None:intergenic
ATAGAAGTTAGGCCTAAAGG+TGG 0.643863 3.2:+1806981 MS.gene009359:CDS
TAATGAGACGGGAATCCGAA+GGG 0.645707 3.2:-1804988 None:intergenic
ATACCGAGTATTTCGGGACA+AGG 0.650354 3.2:-1806583 None:intergenic
AATGTCCCGGTCCTAGATGG+AGG 0.653167 3.2:+1806790 MS.gene009359:CDS
CTATCAATTGATGTAGAAGG+TGG 0.658482 3.2:+1806666 MS.gene009359:CDS
CAAGTGGTTCCAAACAGCGT+CGG 0.661303 3.2:-1804963 None:intergenic
TTAATGAGACGGGAATCCGA+AGG 0.663113 3.2:-1804989 None:intergenic
GCCCTAGTATGAGAAGCGAT+GGG 0.672039 3.2:+1806841 MS.gene009359:CDS
GTTGTCGAGAAATTGGAGAG+TGG 0.680092 3.2:+1806927 MS.gene009359:CDS
CTAGTATGAGAAGCGATGGG+TGG 0.686490 3.2:+1806844 MS.gene009359:CDS
GCTGCAATCCTATTACACTC+GGG 0.696916 3.2:-1806818 None:intergenic
AGATCTCTCACCATTCATTG+CGG 0.710070 3.2:+1805303 MS.gene009359:CDS
AGTGATGATAGTGATGATAG+CGG 0.780024 3.2:+1805336 MS.gene009359:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTAATCAATTGTTA+AGG + chr3.2:1805172-1805191 MS.gene009359:intron 10.0%
!! AAAAAAAAAAAAAACTAACC+TGG - chr3.2:1805403-1805422 None:intergenic 15.0%
!! CAAATATTGATATATTTAGA+GGG - chr3.2:1805579-1805598 None:intergenic 15.0%
!! TCAAATATTGATATATTTAG+AGG - chr3.2:1805580-1805599 None:intergenic 15.0%
!!! AAAACCTAAAAGAATATTTT+TGG - chr3.2:1805613-1805632 None:intergenic 15.0%
!!! AAAACCTAAGAAATATTTTA+GGG + chr3.2:1805726-1805745 MS.gene009359:intron 15.0%
!!! AAAATATTCTTTTAGGTTTT+TGG + chr3.2:1805613-1805632 MS.gene009359:intron 15.0%
!!! ATTTGTGAATCAATTTTTTA+TGG + chr3.2:1805808-1805827 MS.gene009359:intron 15.0%
!!! TTTGTGAATCAATTTTTTAT+GGG + chr3.2:1805809-1805828 MS.gene009359:intron 15.0%
!! AACCTTTATGAATACTAAAT+TGG + chr3.2:1805535-1805554 MS.gene009359:intron 20.0%
!! ACCTTTATGAATACTAAATT+GGG + chr3.2:1805536-1805555 MS.gene009359:intron 20.0%
!! ATAATAGTATCATTAACACA+AGG - chr3.2:1805429-1805448 None:intergenic 20.0%
!! ATCAAATGTTGGTATATTTA+AGG + chr3.2:1805757-1805776 MS.gene009359:intron 20.0%
!! CAGTGAATATTAATGTTATA+TGG + chr3.2:1806074-1806093 MS.gene009359:intron 20.0%
!! CATATAACATTAATATTCAC+TGG - chr3.2:1806076-1806095 None:intergenic 20.0%
!! CCTAATATTTAAGAAATTCA+CGG - chr3.2:1805134-1805153 None:intergenic 20.0%
!! CTAGTATATAATATATAGTG+TGG + chr3.2:1806036-1806055 MS.gene009359:intron 20.0%
!! TCAAATGTTGGTATATTTAA+GGG + chr3.2:1805758-1805777 MS.gene009359:intron 20.0%
!!! AAACCTAAGAAATATTTTAG+GGG + chr3.2:1805727-1805746 MS.gene009359:intron 20.0%
!!! AATTGATTCACAAATTTAGT+AGG - chr3.2:1805803-1805822 None:intergenic 20.0%
!!! ATTGATTCACAAATTTAGTA+GGG - chr3.2:1805802-1805821 None:intergenic 20.0%
!!! ATTTCATGGATGAAATTTTT+TGG - chr3.2:1805644-1805663 None:intergenic 20.0%
!!! CAAAACCTAAGAAATATTTT+AGG + chr3.2:1805725-1805744 MS.gene009359:intron 20.0%
!!! CATAGATGAAATTTTCTAAA+GGG + chr3.2:1805700-1805719 MS.gene009359:intron 20.0%
!!! TCATAGATGAAATTTTCTAA+AGG + chr3.2:1805699-1805718 MS.gene009359:intron 20.0%
! ACCCAATTTAGTATTCATAA+AGG - chr3.2:1805540-1805559 None:intergenic 25.0%
! ATTATGACATTGATAAAGAG+TGG + chr3.2:1805361-1805380 MS.gene009359:CDS 25.0%
! ATTCATGTGTAAGTTAACTT+TGG - chr3.2:1806254-1806273 None:intergenic 25.0%
! CAAATGTTGGTATATTTAAG+GGG + chr3.2:1805759-1805778 MS.gene009359:intron 25.0%
! CCGTGAATTTCTTAAATATT+AGG + chr3.2:1805131-1805150 MS.gene009359:intron 25.0%
! CTCTGAATTTCATATATTCA+AGG - chr3.2:1805234-1805253 None:intergenic 25.0%
! GAATATTTATTTGCATAGTG+TGG + chr3.2:1806116-1806135 MS.gene009359:intron 25.0%
! TAAAAGAGAATTATCAGAGA+GGG - chr3.2:1806303-1806322 None:intergenic 25.0%
! TATGTTAATGAAGCCATATT+GGG - chr3.2:1805468-1805487 None:intergenic 25.0%
! TGTAGATACGATAATAATGT+AGG - chr3.2:1806408-1806427 None:intergenic 25.0%
! TTAAAAGAGAATTATCAGAG+AGG - chr3.2:1806304-1806323 None:intergenic 25.0%
! TTATGTTAATGAAGCCATAT+TGG - chr3.2:1805469-1805488 None:intergenic 25.0%
! TTCATGTGTAAGTTAACTTT+GGG - chr3.2:1806253-1806272 None:intergenic 25.0%
! TTGTCTTTGCAATTATTTAC+AGG + chr3.2:1806493-1806512 MS.gene009359:intron 25.0%
! TTTAAATTGGATAGGAAAAG+CGG + chr3.2:1805255-1805274 MS.gene009359:CDS 25.0%
!! AATTGGGTTAGATATGTAAT+TGG + chr3.2:1805552-1805571 MS.gene009359:intron 25.0%
!! TGCTCCAAAAATATTCTTTT+AGG + chr3.2:1805606-1805625 MS.gene009359:intron 25.0%
!! TTTTTCACATATATGTCTGT+TGG + chr3.2:1805844-1805863 MS.gene009359:intron 25.0%
!!! AACCTAAGAAATATTTTAGG+GGG + chr3.2:1805728-1805747 MS.gene009359:intron 25.0%
!!! ATTTTGAGAGAAGCTATATA+TGG - chr3.2:1805923-1805942 None:intergenic 25.0%
!!! GATTTTGAGACATTAATCTA+TGG - chr3.2:1805901-1805920 None:intergenic 25.0%
!!! TGAAATTCAGAGCTTTAAAT+TGG + chr3.2:1805242-1805261 MS.gene009359:intron 25.0%
AAAAGAGAATTATCAGAGAG+GGG - chr3.2:1806302-1806321 None:intergenic 30.0%
AAAGGAAAGTCTTAGAAACA+AGG - chr3.2:1804931-1804950 None:intergenic 30.0%
AAGGAAAGTCTTAGAAACAA+GGG - chr3.2:1804930-1804949 None:intergenic 30.0%
AAGGGAAATTTCTTTCTTGA+AGG + chr3.2:1806957-1806976 MS.gene009359:CDS 30.0%
AGAAATTCACGGTTATGAAA+AGG - chr3.2:1805123-1805142 None:intergenic 30.0%
AGATGATAGAGTTAATGAGA+CGG - chr3.2:1805003-1805022 None:intergenic 30.0%
ATATGGTTTGAGTGATAACA+TGG + chr3.2:1805954-1805973 MS.gene009359:intron 30.0%
GTATTATACTCCATATGTGA+TGG + chr3.2:1806431-1806450 MS.gene009359:intron 30.0%
TAGAATTCTGTTAGAAGACT+CGG - chr3.2:1806019-1806038 None:intergenic 30.0%
TATGGTTTGAGTGATAACAT+GGG + chr3.2:1805955-1805974 MS.gene009359:intron 30.0%
TGAAGCTCAATATTAGTGAT+GGG + chr3.2:1806275-1806294 MS.gene009359:intron 30.0%
TTCTTGAAGGAATAGAAGTT+AGG + chr3.2:1806970-1806989 MS.gene009359:CDS 30.0%
! TTCAAGATGATTGATGACTA+TGG + chr3.2:1806621-1806640 MS.gene009359:CDS 30.0%
!! TTCAGAGCTTTAAATTGGAT+AGG + chr3.2:1805247-1805266 MS.gene009359:intron 30.0%
!!! CATATTGGGTTTTAAGTGAT+GGG - chr3.2:1805454-1805473 None:intergenic 30.0%
!!! TCATGGATGAAATTTTTTGG+AGG - chr3.2:1805641-1805660 None:intergenic 30.0%
ACATCAATTGATAGGTCCAT+AGG - chr3.2:1806660-1806679 None:intergenic 35.0%
ATTTCTCGACAACACTCATT+TGG - chr3.2:1806920-1806939 None:intergenic 35.0%
CAAAATGAGAAGGCTACATA+TGG + chr3.2:1805937-1805956 MS.gene009359:intron 35.0%
CACCTTCTACATCAATTGAT+AGG - chr3.2:1806668-1806687 None:intergenic 35.0%
CCATCACTTAAAACCCAATA+TGG + chr3.2:1805452-1805471 MS.gene009359:intron 35.0%
CTATCAATTGATGTAGAAGG+TGG + chr3.2:1806666-1806685 MS.gene009359:CDS 35.0%
CTGAAGCTCAATATTAGTGA+TGG + chr3.2:1806274-1806293 MS.gene009359:intron 35.0%
GACCTATCAATTGATGTAGA+AGG + chr3.2:1806663-1806682 MS.gene009359:CDS 35.0%
GAGTTCAATTCAAGACTTGA+AGG + chr3.2:1806885-1806904 MS.gene009359:CDS 35.0%
GATGATAGAGTTAATGAGAC+GGG - chr3.2:1805002-1805021 None:intergenic 35.0%
GGATTCATATGAATGATTCC+AGG + chr3.2:1805382-1805401 MS.gene009359:CDS 35.0%
GTCCCCCTAAAATATTTCTT+AGG - chr3.2:1805733-1805752 None:intergenic 35.0%
GTGATTCATACCATCACATA+TGG - chr3.2:1806444-1806463 None:intergenic 35.0%
TAGCTTCTCTCAAAATGAGA+AGG + chr3.2:1805927-1805946 MS.gene009359:intron 35.0%
TAGGCTCATCAACTAAAGTT+TGG - chr3.2:1806389-1806408 None:intergenic 35.0%
TGGATTTGAGAATGAACCTA+TGG + chr3.2:1806641-1806660 MS.gene009359:CDS 35.0%
! AATGAGTGTTGTCGAGAAAT+TGG + chr3.2:1806920-1806939 MS.gene009359:CDS 35.0%
! AGTGATGATAGTGATGATAG+CGG + chr3.2:1805336-1805355 MS.gene009359:CDS 35.0%
! GAAAGTTAGAAGCATGACAA+TGG - chr3.2:1806184-1806203 None:intergenic 35.0%
! TTGCCTAATTTTCCACCTTT+AGG - chr3.2:1806996-1807015 None:intergenic 35.0%
!! GACCATGATTGATGATGATT+GGG - chr3.2:1805090-1805109 None:intergenic 35.0%
!!! CCATATTGGGTTTTAAGTGA+TGG - chr3.2:1805455-1805474 None:intergenic 35.0%
AATCCTATTACACTCGGGTA+TGG - chr3.2:1806816-1806835 None:intergenic 40.0%
ACTGCTCTACATTGAGAACA+GGG - chr3.2:1805671-1805690 None:intergenic 40.0%
AGATCTCTCACCATTCATTG+CGG + chr3.2:1805303-1805322 MS.gene009359:CDS 40.0%
AGCCCAATCATCATCAATCA+TGG + chr3.2:1805085-1805104 MS.gene009359:CDS 40.0%
AGGCCTAAAGGTGGAAAATT+AGG + chr3.2:1806990-1807009 MS.gene009359:CDS 40.0%
ATAAAGAAAGAACGTGCTCG+AGG + chr3.2:1806736-1806755 MS.gene009359:CDS 40.0%
ATAGAAGTTAGGCCTAAAGG+TGG + chr3.2:1806981-1807000 MS.gene009359:CDS 40.0%
ATCAGATAGAGCGAGATAGA+GGG - chr3.2:1805065-1805084 None:intergenic 40.0%
ATTGGAGAGTGGCAATAAGA+AGG + chr3.2:1806938-1806957 MS.gene009359:CDS 40.0%
CATCATCAATCATGGTCGAA+AGG + chr3.2:1805093-1805112 MS.gene009359:CDS 40.0%
GAGAACAGGGACTAATTTCA+TGG - chr3.2:1805658-1805677 None:intergenic 40.0%
GGAATAGAAGTTAGGCCTAA+AGG + chr3.2:1806978-1806997 MS.gene009359:CDS 40.0%
GGGGGACTAAAATCAAATGT+TGG + chr3.2:1805746-1805765 MS.gene009359:intron 40.0%
GTGTTCTCGCTTAAAATTCG+TGG + chr3.2:1806543-1806562 MS.gene009359:CDS 40.0%
TAGCACTAAATCCGTCTGTT+TGG + chr3.2:1806695-1806714 MS.gene009359:CDS 40.0%
TATCAGATAGAGCGAGATAG+AGG - chr3.2:1805066-1805085 None:intergenic 40.0%
TTGGAGAGTGGCAATAAGAA+GGG + chr3.2:1806939-1806958 MS.gene009359:CDS 40.0%
TTTCCTTGTCCCGAAATACT+CGG + chr3.2:1806580-1806599 MS.gene009359:CDS 40.0%
! AGACGGATTTAGTGCTACAA+TGG - chr3.2:1806692-1806711 None:intergenic 40.0%
! GCTTTTGATGAATTTCCGGA+AGG + chr3.2:1804851-1804870 MS.gene009359:CDS 40.0%
! GGCAGAGCTACTCATATTTT+GGG + chr3.2:1805976-1805995 MS.gene009359:intron 40.0%
! GGCAGCTTTTGATGAATTTC+CGG + chr3.2:1804847-1804866 MS.gene009359:CDS 40.0%
!! AGAGCTACTCATATTTTGGG+AGG + chr3.2:1805979-1805998 MS.gene009359:intron 40.0%
!! AGCTACTCATATTTTGGGAG+GGG + chr3.2:1805981-1806000 MS.gene009359:intron 40.0%
!! CGACCATGATTGATGATGAT+TGG - chr3.2:1805091-1805110 None:intergenic 40.0%
!! GAGCTACTCATATTTTGGGA+GGG + chr3.2:1805980-1805999 MS.gene009359:intron 40.0%
AAGCCGCATACCGAGTATTT+CGG - chr3.2:1806593-1806612 None:intergenic 45.0%
ACCCATCGCTTCTCATACTA+GGG - chr3.2:1806845-1806864 None:intergenic 45.0%
ATACCGAGTATTTCGGGACA+AGG - chr3.2:1806586-1806605 None:intergenic 45.0%
ATGCAAAGCTTAGCGACTTC+AGG - chr3.2:1806522-1806541 None:intergenic 45.0%
CACTGCTCTACATTGAGAAC+AGG - chr3.2:1805672-1805691 None:intergenic 45.0%
CGCTGCAATCCTATTACACT+CGG - chr3.2:1806822-1806841 None:intergenic 45.0%
CGTACTGTTTGCAAATGTCC+CGG + chr3.2:1806777-1806796 MS.gene009359:CDS 45.0%
GAGAGTCTGCAAACATCAAC+AGG - chr3.2:1804908-1804927 None:intergenic 45.0%
GCAAACAGTACGACGTTTGT+AGG - chr3.2:1806769-1806788 None:intergenic 45.0%
GCTGCAATCCTATTACACTC+GGG - chr3.2:1806821-1806840 None:intergenic 45.0%
GTTGTCGAGAAATTGGAGAG+TGG + chr3.2:1806927-1806946 MS.gene009359:CDS 45.0%
TAATGAGACGGGAATCCGAA+GGG - chr3.2:1804991-1805010 None:intergenic 45.0%
TCTTTATTGCGTGACGCGTT+TGG - chr3.2:1806723-1806742 None:intergenic 45.0%
TTAATGAGACGGGAATCCGA+AGG - chr3.2:1804992-1805011 None:intergenic 45.0%
TTCTGTTAGAAGACTCGGCA+TGG - chr3.2:1806014-1806033 None:intergenic 45.0%
! GGGCAGAGCTACTCATATTT+TGG + chr3.2:1805975-1805994 MS.gene009359:intron 45.0%
!! AGATAGAGGGCCTTTTTGGT+GGG - chr3.2:1805052-1805071 None:intergenic 45.0%
!!! TATTTACTTATAATTTTTTT+TGG - chr3.2:1806209-1806228 None:intergenic 5.0%
AGCCGCATACCGAGTATTTC+GGG - chr3.2:1806592-1806611 None:intergenic 50.0%
AGGAGTCGTACGAGACAGAA+TGG - chr3.2:1804888-1804907 None:intergenic 50.0%
AGGCCATACCCGAGTGTAAT+AGG + chr3.2:1806810-1806829 MS.gene009359:CDS 50.0%
ATGGCTGAGATGCATCCTTC+CGG - chr3.2:1804869-1804888 None:intergenic 50.0%
CAAGTGGTTCCAAACAGCGT+CGG - chr3.2:1804966-1804985 None:intergenic 50.0%
CACCCATCGCTTCTCATACT+AGG - chr3.2:1806846-1806865 None:intergenic 50.0%
CGCGTTTGGATCCAAACAGA+CGG - chr3.2:1806709-1806728 None:intergenic 50.0%
CTAGTATGAGAAGCGATGGG+TGG + chr3.2:1806844-1806863 MS.gene009359:CDS 50.0%
CTCACCATTCATTGCGGTGA+TGG + chr3.2:1805309-1805328 MS.gene009359:CDS 50.0%
GCCCTAGTATGAGAAGCGAT+GGG + chr3.2:1806841-1806860 MS.gene009359:CDS 50.0%
GGGTGGTTGGAGATTGAGAT+GGG + chr3.2:1806861-1806880 MS.gene009359:CDS 50.0%
GTCCCGAAATACTCGGTATG+CGG + chr3.2:1806587-1806606 MS.gene009359:CDS 50.0%
TATGAGAAGCGATGGGTGGT+TGG + chr3.2:1806848-1806867 MS.gene009359:CDS 50.0%
TGGGTGGTTGGAGATTGAGA+TGG + chr3.2:1806860-1806879 MS.gene009359:CDS 50.0%
TTAGAAGACTCGGCATGGAC+AGG - chr3.2:1806009-1806028 None:intergenic 50.0%
TTGGAACCACTTGCTCCCTT+CGG + chr3.2:1804973-1804992 MS.gene009359:CDS 50.0%
! ACCATTCATTGCGGTGATGG+TGG + chr3.2:1805312-1805331 MS.gene009359:CDS 50.0%
! AGCGAGATAGAGGGCCTTTT+TGG - chr3.2:1805056-1805075 None:intergenic 50.0%
! GAGATAGAGGGCCTTTTTGG+TGG - chr3.2:1805053-1805072 None:intergenic 50.0%
AATGTCCCGGTCCTAGATGG+AGG + chr3.2:1806790-1806809 MS.gene009359:CDS 55.0%
CGCCCTAGTATGAGAAGCGA+TGG + chr3.2:1806840-1806859 MS.gene009359:CDS 55.0%
CGTCGGAATCAGCAGCAGAA+AGG - chr3.2:1804949-1804968 None:intergenic 55.0%
GCAAATGTCCCGGTCCTAGA+TGG + chr3.2:1806787-1806806 MS.gene009359:CDS 55.0%
GCCACCATCACCGCAATGAA+TGG - chr3.2:1805316-1805335 None:intergenic 55.0%
TGCCAACGCTCCCACCAAAA+AGG + chr3.2:1805039-1805058 MS.gene009359:CDS 55.0%
! GTATGGCCTCCATCTAGGAC+CGG - chr3.2:1806799-1806818 None:intergenic 55.0%
! TATGGCCTCCATCTAGGACC+GGG - chr3.2:1806798-1806817 None:intergenic 55.0%
!! CTGCTGATTCCGACGCTGTT+TGG + chr3.2:1804954-1804973 MS.gene009359:CDS 55.0%
!! TTTGGTGGGAGCGTTGGCAA+GGG - chr3.2:1805038-1805057 None:intergenic 55.0%
!!! TTTTGGTGGGAGCGTTGGCA+AGG - chr3.2:1805039-1805058 None:intergenic 55.0%
CTCGGGTATGGCCTCCATCT+AGG - chr3.2:1806804-1806823 None:intergenic 60.0%
GGGAATCCGAAGGGAGCAAG+TGG - chr3.2:1804982-1805001 None:intergenic 60.0%
!! GGCCTTTTTGGTGGGAGCGT+TGG - chr3.2:1805044-1805063 None:intergenic 60.0%
!! GTGGGAGCGTTGGCAAGGGA+AGG - chr3.2:1805034-1805053 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 1804842 1807025 1804842 ID=MS.gene009359
chr3.2 mRNA 1804842 1807025 1804842 ID=MS.gene009359.t1;Parent=MS.gene009359
chr3.2 exon 1804842 1805114 1804842 ID=MS.gene009359.t1.exon1;Parent=MS.gene009359.t1
chr3.2 CDS 1804842 1805114 1804842 ID=cds.MS.gene009359.t1;Parent=MS.gene009359.t1
chr3.2 exon 1805252 1805403 1805252 ID=MS.gene009359.t1.exon2;Parent=MS.gene009359.t1
chr3.2 CDS 1805252 1805403 1805252 ID=cds.MS.gene009359.t1;Parent=MS.gene009359.t1
chr3.2 exon 1806515 1807025 1806515 ID=MS.gene009359.t1.exon3;Parent=MS.gene009359.t1
chr3.2 CDS 1806515 1807025 1806515 ID=cds.MS.gene009359.t1;Parent=MS.gene009359.t1
Gene Sequence

>MS.gene009359

ATGGAGGCAGCTTTTGATGAATTTCCGGAAGGATGCATCTCAGCCATTCTGTCTCGTACGACTCCTGTTGATGTTTGCAGACTCTCCCTTGTTTCTAAGACTTTCCTTTCTGCTGCTGATTCCGACGCTGTTTGGAACCACTTGCTCCCTTCGGATTCCCGTCTCATTAACTCTATCATCTCACATTCTCCTTCCCTTGCCAACGCTCCCACCAAAAAGGCCCTCTATCTCGCTCTATCTGATAGCCCAATCATCATCAATCATGGTCGAAAGGTATTCCTTTTCATAACCGTGAATTTCTTAAATATTAGGCTTTATTTTAGAAAAAATTAATTTTTAATCAATTGTTAAGGCTTATTGATTTAAGATGTTTTCGAAATGCTAATAAGCCTTGAATATATGAAATTCAGAGCTTTAAATTGGATAGGAAAAGCGGAAAAATATGTTACATGCTTGCTGCTAGATCTCTCACCATTCATTGCGGTGATGGTGGCAGTGATGATAGTGATGATAGCGGTGATTATGACATTGATAAAGAGTGGATTCATATGAATGATTCCAGGTTAGTTTTTTTTTTTTTTTTTCCTTGTGTTAATGATACTATTATTTCCCATCACTTAAAACCCAATATGGCTTCATTAACATAATCAACAGTTCTTGTCAAAAAAAAAAAAAACATAATCAACAGTTCTAAACCTTTATGAATACTAAATTGGGTTAGATATGTAATTGGTCCCTCTAAATATATCAATATTTGATTTTAGTGCTCCAAAAATATTCTTTTAGGTTTTTGGTTCCTCCAAAAAATTTCATCCATGAAATTAGTCCCTGTTCTCAATGTAGAGCAGTGACTAATTTCATAGATGAAATTTTCTAAAGGGAACAAAACCTAAGAAATATTTTAGGGGGACTAAAATCAAATGTTGGTATATTTAAGGGGACTATTTACTTATTTAACCCTACTAAATTTGTGAATCAATTTTTTATGGGCTTGAATTATTCTTTTTCACATATATGTCTGTTGGCAAAGAAATTTTCTGCAACTTTTAAATCATGCCATAGATTAATGTCTCAAAATCCATATATAGCTTCTCTCAAAATGAGAAGGCTACATATGGTTTGAGTGATAACATGGGCAGAGCTACTCATATTTTGGGAGGGGCTCCTGTCCATGCCGAGTCTTCTAACAGAATTCTAGTATATAATATATAGTGTGGAGTATTATGATAGTCCAGTGAATATTAATGTTATATGGACAATTATGATAGTCTAATGAATATTTATTTGCATAGTGTGGAGTATTAATGATACATATATTGTATTTTTGTTAAAATATTTTCCATTGTCATGCTTCTAACTTTCTTCCAAAAAAAATTATAAGTAAATACTTCTCGCTAGACTATTCAAACCCAAAGTTAACTTACACATGAATCTGAAGCTCAATATTAGTGATGGGTCCCCTCTCTGATAATTCTCTTTTAATAGATAATAAACAATATAACTTATTAATTGAGAAGTTTCTCAATATGCTTCGTTTACAACTTCCAAACTTTAGTTGATGAGCCTACATTATTATCGTATCTACACTTGTATTATACTCCATATGTGATGGTATGAATCACTTTCATCTTTTTTCAAAATTCTTGTATTCTTGTCTTTGCAATTATTTACAGGTTTCCTGAAGTCGCTAAGCTTTGCATTGTGTTCTCGCTTAAAATTCGTGGAGTGATCAACACTTTTTCCTTGTCCCGAAATACTCGGTATGCGGCTTATCTTGTGTTCAAGATGATTGATGACTATGGATTTGAGAATGAACCTATGGACCTATCAATTGATGTAGAAGGTGGCCATTGTAGCACTAAATCCGTCTGTTTGGATCCAAACGCGTCACGCAATAAAGAAAGAACGTGCTCGAGGAATCACTCCTACAAACGTCGTACTGTTTGCAAATGTCCCGGTCCTAGATGGAGGCCATACCCGAGTGTAATAGGATTGCAGCGCCCTAGTATGAGAAGCGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCAATTCAAGACTTGAAGGAGAAAAAGTCCAAATGAGTGTTGTCGAGAAATTGGAGAGTGGCAATAAGAAGGGAAATTTCTTTCTTGAAGGAATAGAAGTTAGGCCTAAAGGTGGAAAATTAGGCAATATTCATTGA

Protein sequence

>MS.gene009359.t1

MEAAFDEFPEGCISAILSRTTPVDVCRLSLVSKTFLSAADSDAVWNHLLPSDSRLINSIISHSPSLANAPTKKALYLALSDSPIIINHGRKSFKLDRKSGKICYMLAARSLTIHCGDGGSDDSDDSGDYDIDKEWIHMNDSRFPEVAKLCIVFSLKIRGVINTFSLSRNTRYAAYLVFKMIDDYGFENEPMDLSIDVEGGHCSTKSVCLDPNASRNKERTCSRNHSYKRRTVCKCPGPRWRPYPSVIGLQRPSMRSDGWLEIEMGEFNSRLEGEKVQMSVVEKLESGNKKGNFFLEGIEVRPKGGKLGNIH