AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41431


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41431.t1 MTR_1g100597 94.265 279 12 2 1 279 1 275 0.0 533
MS.gene41431.t1 MTR_1g079370 73.188 276 63 1 1 276 1 265 3.86e-146 410
MS.gene41431.t1 MTR_1g079180 73.835 279 56 4 1 276 1 265 3.33e-143 403
MS.gene41431.t1 MTR_1g079260 70.423 284 70 3 1 279 1 275 1.78e-141 399
MS.gene41431.t1 MTR_1g079230 69.643 280 80 2 1 279 1 276 4.93e-140 395
MS.gene41431.t1 MTR_1g100613 80.000 240 48 0 20 259 5 244 8.41e-137 386
MS.gene41431.t1 MTR_1g079460 69.149 282 71 2 1 279 1 269 1.23e-136 386
MS.gene41431.t1 MTR_1g079200 70.463 281 61 4 1 276 1 264 2.00e-134 380
MS.gene41431.t1 MTR_1g079380 71.942 278 67 1 1 278 1 267 1.27e-133 380
MS.gene41431.t1 MTR_1g079850 68.662 284 84 3 1 279 1 284 3.27e-131 373
MS.gene41431.t1 MTR_3g006850 64.262 305 79 5 3 279 16 318 2.44e-123 355
MS.gene41431.t1 MTR_1g079250 65.385 286 87 6 1 279 1 281 1.08e-113 329
MS.gene41431.t1 MTR_1g026510 61.168 291 96 7 1 279 1 286 1.79e-112 327
MS.gene41431.t1 MTR_3g452600 61.594 276 91 2 4 279 10 270 6.77e-112 324
MS.gene41431.t1 MTR_3g450990 55.442 294 96 4 4 279 10 286 1.41e-99 293
MS.gene41431.t1 MTR_1g079410 55.396 278 105 4 5 276 9 273 5.20e-99 291
MS.gene41431.t1 MTR_2g079100 58.608 273 92 4 3 273 8 261 6.46e-98 288
MS.gene41431.t1 MTR_1g079350 54.007 287 109 6 1 276 1 275 5.18e-93 276
MS.gene41431.t1 MTR_1g079340 52.667 300 104 8 1 276 40 325 8.48e-85 257
MS.gene41431.t1 MTR_1g079140 47.508 301 129 6 4 279 13 309 7.78e-84 254
MS.gene41431.t1 MTR_7g096300 58.397 262 83 5 1 256 1 242 1.54e-83 266
MS.gene41431.t1 MTR_1g079400 47.872 282 122 3 5 276 13 279 1.59e-80 244
MS.gene41431.t1 MTR_1g078470 60.104 193 61 3 84 276 8 184 8.70e-74 224
MS.gene41431.t1 MTR_7g112550 44.291 289 137 10 2 276 5 283 1.56e-69 216
MS.gene41431.t1 MTR_1g083580 40.860 279 158 5 2 276 6 281 5.60e-65 205
MS.gene41431.t1 MTR_7g112560 39.711 277 145 7 4 277 1 258 3.39e-62 197
MS.gene41431.t1 MTR_1g079240 57.368 190 59 4 87 276 12 179 3.08e-61 192
MS.gene41431.t1 MTR_1g076870 70.149 134 35 2 128 256 2 135 1.89e-59 186
MS.gene41431.t1 MTR_4g023570 37.319 276 131 7 4 276 1 237 3.85e-52 171
MS.gene41431.t1 MTR_1g079210 66.667 123 40 1 129 250 7 129 6.11e-46 151
MS.gene41431.t1 MTR_1g079130 44.444 189 92 2 101 276 1 189 1.54e-44 149
MS.gene41431.t1 MTR_1g079350 59.854 137 42 3 1 128 1 133 1.08e-43 148
MS.gene41431.t1 MTR_2g042540 64.762 105 35 2 1 103 1 105 9.89e-37 127
MS.gene41431.t1 MTR_1g078460 71.264 87 25 0 1 87 64 150 5.16e-36 126
MS.gene41431.t1 MTR_7g096310 56.061 132 50 3 57 186 38 163 3.38e-35 124
MS.gene41431.t1 MTR_3g058640 54.867 113 38 1 128 240 7 106 3.95e-34 120
MS.gene41431.t1 MTR_7g103380 26.316 285 173 5 6 275 21 283 7.45e-30 114
MS.gene41431.t1 MTR_0113s0040 30.846 201 124 3 2 188 20 219 4.01e-24 99.0
MS.gene41431.t1 MTR_1g101390 38.621 145 86 2 2 144 26 169 4.53e-23 96.3
MS.gene41431.t1 MTR_1g079220 60.759 79 18 1 165 243 1 66 1.09e-22 89.4
MS.gene41431.t1 MTR_4g083970 26.818 220 126 4 63 277 102 291 1.60e-20 89.4
MS.gene41431.t1 MTR_0002s0020 30.539 167 106 3 6 165 24 187 1.53e-18 83.6
MS.gene41431.t1 MTR_4g102770 33.333 144 92 2 6 146 21 163 3.96e-18 82.4
MS.gene41431.t1 MTR_5g010800 30.137 146 95 4 6 147 19 161 4.47e-16 76.6
MS.gene41431.t1 MTR_1g079390 72.000 50 12 2 222 271 8 55 3.74e-15 68.6
MS.gene41431.t1 MTR_1g079190 73.171 41 11 0 228 268 134 174 2.34e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41431.t1 AT2G02360 42.909 275 134 5 4 275 14 268 3.06e-74 228
MS.gene41431.t1 AT1G80110 43.542 271 134 6 6 275 3 255 1.22e-67 211
MS.gene41431.t1 AT2G02240 42.336 274 138 5 4 275 61 316 2.02e-64 204
MS.gene41431.t1 AT2G02340 42.446 278 142 5 4 275 36 301 3.58e-64 204
MS.gene41431.t1 AT2G02230 37.540 309 156 7 4 279 32 336 2.44e-63 202
MS.gene41431.t1 AT2G02250 41.667 276 138 8 4 275 47 303 3.44e-63 201
MS.gene41431.t1 AT1G09155 41.935 279 152 6 7 276 3 280 3.94e-63 200
MS.gene41431.t1 AT1G56250 41.429 280 154 5 7 277 4 282 7.15e-61 194
MS.gene41431.t1 AT1G56240 41.007 278 154 5 7 275 4 280 2.54e-59 190
MS.gene41431.t1 AT2G02350 37.410 278 153 7 2 275 22 282 1.80e-56 183
MS.gene41431.t1 AT2G02310 35.507 276 159 4 4 276 45 304 1.74e-52 174
MS.gene41431.t1 AT2G02320 37.545 277 146 7 6 275 42 298 7.20e-49 164
MS.gene41431.t1 AT5G24560 42.188 192 98 4 4 192 3 184 1.39e-42 144
MS.gene41431.t1 AT2G02300 34.875 281 142 9 4 276 34 281 2.12e-42 147
MS.gene41431.t1 AT3G53000 28.179 291 171 7 3 278 20 287 2.18e-30 115
MS.gene41431.t1 AT2G02350 33.520 179 101 6 101 275 1 165 2.62e-26 102
MS.gene41431.t1 AT1G12710 25.517 290 164 7 3 275 27 281 1.36e-20 89.4
MS.gene41431.t1 AT1G63090 30.097 206 125 6 3 192 25 227 1.81e-19 86.3
MS.gene41431.t1 AT5G52120 24.749 299 165 8 1 275 18 280 1.13e-18 84.3
MS.gene41431.t1 AT3G61060 31.915 141 93 2 6 144 27 166 2.29e-18 83.2
MS.gene41431.t1 AT3G61060 30.496 141 96 1 6 144 27 167 1.89e-17 80.9
MS.gene41431.t1 AT4G19840 29.319 191 102 7 89 276 85 245 4.54e-15 73.6
MS.gene41431.t1 AT1G12710 25.581 301 192 8 3 275 27 323 1.34e-14 73.2

Find 81 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCTGCATACTGAGTATT+TGG 0.255011 1.4:+78350703 None:intergenic
TTCTGCCTGCGTTCTACATT+TGG 0.271945 1.4:+78350574 None:intergenic
CTTGTATACAAATTGATTGA+TGG 0.301820 1.4:-78350679 MS.gene41431:CDS
CTAGATCTCTCGCCATTACT+TGG 0.320149 1.4:-78351623 MS.gene41431:CDS
ATGGGAGAGTTCTTCAATTC+AGG 0.321358 1.4:-78350451 MS.gene41431:CDS
CATCATCGACGATGCCAAAA+AGG 0.324659 1.4:-78352394 MS.gene41431:intron
CGCAGACATGGAAGACTTTA+CGG 0.338884 1.4:-78350550 MS.gene41431:CDS
AGCAAATGCTCCTTCCAAAA+AGG 0.353184 1.4:-78352448 MS.gene41431:CDS
TAGCACTAAAATTGTCTGTT+TGG 0.362941 1.4:-78350599 MS.gene41431:CDS
GATGAGTGTTATCGAGATAA+AGG 0.385187 1.4:-78350407 MS.gene41431:CDS
AGACGAAGATTAGCAACTTC+GGG 0.388577 1.4:+78350775 None:intergenic
TGAAATGCAGAGCTTTCAAT+TGG 0.399907 1.4:-78351682 MS.gene41431:intron
GGACCACTATGCCTGATTCC+AGG 0.401514 1.4:-78351575 MS.gene41431:intron
CCGCCGATTCCGATGCCGTC+TGG 0.403257 1.4:-78352524 MS.gene41431:CDS
GAGAGTCTGCCGGCGTCAAC+AGG 0.416723 1.4:+78352573 None:intergenic
AGGAGTCGTACGAGACAGTA+TGG 0.422103 1.4:+78352593 None:intergenic
AAGGGGAATTTCTTTCTTGA+GGG 0.424911 1.4:-78350373 MS.gene41431:CDS
AAAATGGCCAACCTGGAATC+AGG 0.426615 1.4:+78351564 None:intergenic
TGATGATAGGTCGATCAGAT+AGG 0.426684 1.4:+78352412 None:intergenic
TTATCTCGATAACACTCATC+TGG 0.440534 1.4:+78350410 None:intergenic
ATTCCAGACGGCATCGGAAT+CGG 0.451722 1.4:+78352521 None:intergenic
GTTGCTTAATTGTCTACCTT+AGG 0.451895 1.4:+78350337 None:intergenic
CGCAGGCAGAACCGCAGACA+TGG 0.453913 1.4:-78350562 MS.gene41431:CDS
ATGATGACCGCTATTGGATC+TGG 0.457353 1.4:-78351596 MS.gene41431:CDS
TAGATCTCTCGCCATTACTT+GGG 0.463262 1.4:-78351622 MS.gene41431:CDS
TTGGCATCGTCGATGATGAT+AGG 0.465612 1.4:+78352399 None:intergenic
CAAGGGGAATTTCTTTCTTG+AGG 0.468108 1.4:-78350374 MS.gene41431:CDS
TACAAATTGATTGATGGCTA+TGG 0.469002 1.4:-78350673 MS.gene41431:CDS
GGGGTGATGATGACCGCTAT+TGG 0.473829 1.4:-78351602 MS.gene41431:CDS
TGAGATGATAGAGTTGATAT+CGG 0.478686 1.4:+78352485 None:intergenic
ACAAATTGATTGATGGCTAT+GGG 0.489453 1.4:-78350672 MS.gene41431:CDS
CGTCCTTGTGTGAGAAGTGA+TGG 0.489686 1.4:-78350490 MS.gene41431:CDS
CTCAAGAAAGAAATTCCCCT+TGG 0.498320 1.4:+78350375 None:intergenic
AAGACGAAGATTAGCAACTT+CGG 0.509597 1.4:+78350774 None:intergenic
CTTCCTGTGGATTTATCTGT+CGG 0.516064 1.4:-78350640 MS.gene41431:CDS
GGCGGCAGAAAGGAAAGTCT+TGG 0.517109 1.4:+78352542 None:intergenic
GGGTTTGAAGATTTAGCAGA+AGG 0.520179 1.4:-78352627 MS.gene41431:CDS
ATGATAGAGTTGATATCGGA+AGG 0.534915 1.4:+78352489 None:intergenic
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 1.4:-78350469 MS.gene41431:CDS
CATCGGAATCGGCGGCAGAA+AGG 0.542303 1.4:+78352532 None:intergenic
TGGGTGGTTGGAGATTGAGA+TGG 0.542699 1.4:-78350470 MS.gene41431:CDS
GTCATCATCACCCCAAGTAA+TGG 0.545677 1.4:+78351611 None:intergenic
GTGTGGTGGCTCGAAATTCG+TGG 0.547967 1.4:-78350751 MS.gene41431:CDS
TGGGTTTGAGAACCTTCCTG+TGG 0.549562 1.4:-78350653 MS.gene41431:CDS
GATGATAGGTCGATCAGATA+GGG 0.551413 1.4:+78352413 None:intergenic
TGTGAGAAGTGATGGGTGGT+TGG 0.556044 1.4:-78350482 MS.gene41431:CDS
GATTTATCTGTCGGTGTCGA+AGG 0.557631 1.4:-78350631 MS.gene41431:CDS
CTAATCTTCGTCTTGTGTGG+TGG 0.562220 1.4:-78350765 MS.gene41431:CDS
TTGCTAATCTTCGTCTTGTG+TGG 0.565369 1.4:-78350768 MS.gene41431:CDS
AGTGTTATCGAGATAAAGGC+TGG 0.568289 1.4:-78350403 MS.gene41431:CDS
GGAAACGACGGAGAGTCTGC+CGG 0.570360 1.4:+78352563 None:intergenic
GAAGGAGCATTTGCTAGAGA+AGG 0.571483 1.4:+78352456 None:intergenic
CAACCTGGAATCAGGCATAG+TGG 0.580151 1.4:+78351572 None:intergenic
GAAGACTTTACGGTCGTGCG+AGG 0.580931 1.4:-78350540 MS.gene41431:CDS
GGGAATAGAAGTGAGGCCTA+AGG 0.588625 1.4:-78350353 MS.gene41431:CDS
TTATCTGTCGGTGTCGAAGG+TGG 0.597798 1.4:-78350628 MS.gene41431:CDS
CACCCATCACTTCTCACACA+AGG 0.598274 1.4:+78350487 None:intergenic
AGATCTCTCGCCATTACTTG+GGG 0.598827 1.4:-78351621 MS.gene41431:CDS
ATAAAGGCTGGTGAGACCAA+GGG 0.599634 1.4:-78350391 MS.gene41431:CDS
GATAAAGGCTGGTGAGACCA+AGG 0.599999 1.4:-78350392 MS.gene41431:CDS
TTCTTGAGGGAATAGAAGTG+AGG 0.602948 1.4:-78350360 MS.gene41431:CDS
AGGTTGCATGACAGAGTGGT+TGG 0.614436 1.4:-78350520 MS.gene41431:CDS
TGTGGTGGCTCGAAATTCGT+GGG 0.618223 1.4:-78350750 MS.gene41431:CDS
CCAGACGGCATCGGAATCGG+CGG 0.622067 1.4:+78352524 None:intergenic
GTCCTTGTGTGAGAAGTGAT+GGG 0.633145 1.4:-78350489 MS.gene41431:CDS
ACACCGACAGATAAATCCAC+AGG 0.642651 1.4:+78350637 None:intergenic
ATACTGAGTATTTGGAGACA+AGG 0.643026 1.4:+78350711 None:intergenic
AAAGTGATTCCAGACGGCAT+CGG 0.647589 1.4:+78352515 None:intergenic
TAAAGGCTGGTGAGACCAAG+GGG 0.647680 1.4:-78350390 MS.gene41431:CDS
TCACTTCTCACACAAGGACG+CGG 0.648694 1.4:+78350493 None:intergenic
TGGATCCAAATGTAGAACGC+AGG 0.654508 1.4:-78350579 MS.gene41431:CDS
AAGGAAAGTCTTGGAAACGA+CGG 0.661166 1.4:+78352551 None:intergenic
CGTAAAGTCTTCCATGTCTG+CGG 0.661378 1.4:+78350551 None:intergenic
AGGAAGAAAGTGATTCCAGA+CGG 0.665074 1.4:+78352509 None:intergenic
TGCGAGGTTGCATGACAGAG+TGG 0.690017 1.4:-78350524 MS.gene41431:CDS
CGACAGATAAATCCACAGGA+AGG 0.695590 1.4:+78350641 None:intergenic
GACGAAGATTAGCAACTTCG+GGG 0.697062 1.4:+78350776 None:intergenic
CGTACGACTCCTGTTGACGC+CGG 0.716965 1.4:-78352582 MS.gene41431:CDS
CTTGTGTGAGAAGTGATGGG+TGG 0.722396 1.4:-78350486 MS.gene41431:CDS
TAGTGGTCCAGATCCAATAG+CGG 0.737188 1.4:+78351589 None:intergenic
AGTCGTACGAGACAGTATGG+AGG 0.760723 1.4:+78352596 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTAGATATATTATTATAT+AGG - chr1.4:78351065-78351084 MS.gene41431:intron 10.0%
!! GTACATTTATTATTATTATT+AGG - chr1.4:78350794-78350813 MS.gene41431:intron 10.0%
!! AATAAAAATGAGTAAATTTG+GGG + chr1.4:78351442-78351461 None:intergenic 15.0%
!! CAATAAAAATGAGTAAATTT+GGG + chr1.4:78351443-78351462 None:intergenic 15.0%
!! TGAAATAATTTAGTTATCAT+TGG - chr1.4:78351927-78351946 MS.gene41431:intron 15.0%
!! AAAAAAAAGTTATTAGACAG+TGG + chr1.4:78351850-78351869 None:intergenic 20.0%
!! ATAAAAATGAGTAAATTTGG+GGG + chr1.4:78351441-78351460 None:intergenic 20.0%
!! ATTGATTGCTGTAAAATATA+TGG - chr1.4:78351217-78351236 MS.gene41431:intron 20.0%
!! CCAATAAAAATGAGTAAATT+TGG + chr1.4:78351444-78351463 None:intergenic 20.0%
!!! ACTGATTTTGATTAATTTGT+AGG + chr1.4:78351095-78351114 None:intergenic 20.0%
!!! CCAAATTTACTCATTTTTAT+TGG - chr1.4:78351441-78351460 MS.gene41431:intron 20.0%
!!! CTGATTTTGATTAATTTGTA+GGG + chr1.4:78351094-78351113 None:intergenic 20.0%
!!! GATTTTTTAAATGCTTAGTT+TGG - chr1.4:78351241-78351260 MS.gene41431:intron 20.0%
!!! TGATTTTGATTAATTTGTAG+GGG + chr1.4:78351093-78351112 None:intergenic 20.0%
! AGGATTCATAACATCATAAA+TGG + chr1.4:78352120-78352139 None:intergenic 25.0%
! ATTGATTGTTCTTTCATGTT+AGG - chr1.4:78350671-78350690 MS.gene41431:CDS 25.0%
! CTTGTATACAAATTGATTGA+TGG - chr1.4:78352296-78352315 MS.gene41431:intron 25.0%
! GAACAATGTTAAAACAAACA+AGG + chr1.4:78351482-78351501 None:intergenic 25.0%
! GAATTGAGAAAAAGTTGAAA+AGG + chr1.4:78352140-78352159 None:intergenic 25.0%
! TGAGAAGATATAGAAAATAC+AGG + chr1.4:78351197-78351216 None:intergenic 25.0%
! TTGATTGTTCTTTCATGTTA+GGG - chr1.4:78350672-78350691 MS.gene41431:CDS 25.0%
! TTTCAATTGGATAGAAAAAG+TGG - chr1.4:78351306-78351325 MS.gene41431:intron 25.0%
!! AATATGTGATGATACCTTTT+TGG + chr1.4:78350598-78350617 None:intergenic 25.0%
!! AATGCTAATAATAAGCCTTT+TGG - chr1.4:78351264-78351283 MS.gene41431:intron 25.0%
!! ATGCTAATAATAAGCCTTTT+GGG - chr1.4:78351265-78351284 MS.gene41431:intron 25.0%
!! GTTATTACTCTTTTTGATGA+TGG - chr1.4:78352021-78352040 MS.gene41431:intron 25.0%
AATTGTTCATTCCATTTCCT+TGG - chr1.4:78351519-78351538 MS.gene41431:intron 30.0%
AGATGAAAGTTTCCTTAATG+AGG + chr1.4:78351586-78351605 None:intergenic 30.0%
ATACGAAATATCCAAGGAAA+TGG + chr1.4:78351533-78351552 None:intergenic 30.0%
ATGAAAGTTTCCTTAATGAG+GGG + chr1.4:78351584-78351603 None:intergenic 30.0%
GATGAAAGTTTCCTTAATGA+GGG + chr1.4:78351585-78351604 None:intergenic 30.0%
GTTAAAACAAACAAGGTAGA+AGG + chr1.4:78351475-78351494 None:intergenic 30.0%
TAGCACTAAAATTGTCTGTT+TGG - chr1.4:78352376-78352395 MS.gene41431:intron 30.0%
TCAGCCAATATACATTTACA+GGG + chr1.4:78351156-78351175 None:intergenic 30.0%
TGCATTTCAATATACCCAAA+AGG + chr1.4:78351282-78351301 None:intergenic 30.0%
TTCAGCCAATATACATTTAC+AGG + chr1.4:78351157-78351176 None:intergenic 30.0%
TTGAATATACCCATAGTCTT+TGG - chr1.4:78351631-78351650 MS.gene41431:CDS 30.0%
! ACAAATTGATTGATGGCTAT+GGG - chr1.4:78352303-78352322 MS.gene41431:intron 30.0%
! CATCATCGTCTGAAATATTA+GGG - chr1.4:78350619-78350638 MS.gene41431:CDS 30.0%
! TACAAATTGATTGATGGCTA+TGG - chr1.4:78352302-78352321 MS.gene41431:intron 30.0%
! TCATCATCGTCTGAAATATT+AGG - chr1.4:78350618-78350637 MS.gene41431:CDS 30.0%
!! ACAAGAAGTATTCACTTAGA+AGG + chr1.4:78351762-78351781 None:intergenic 30.0%
!! AGACAATTTTAGTGCTACTA+TGG + chr1.4:78352373-78352392 None:intergenic 30.0%
!! TGAGATGATAGAGTTGATAT+CGG + chr1.4:78350493-78350512 None:intergenic 30.0%
!!! GAGCTGTTTCAAAGTTTTTT+TGG - chr1.4:78351983-78352002 MS.gene41431:intron 30.0%
AAAACAAACAAGGTAGAAGG+TGG + chr1.4:78351472-78351491 None:intergenic 35.0%
AAAATGAGTAAATTTGGGGG+AGG + chr1.4:78351438-78351457 None:intergenic 35.0%
AACCTCAATAACAGTGATGT+TGG - chr1.4:78351823-78351842 MS.gene41431:intron 35.0%
AAGACGAAGATTAGCAACTT+CGG + chr1.4:78352204-78352223 None:intergenic 35.0%
AAGGGGAATTTCTTTCTTGA+GGG - chr1.4:78352602-78352621 MS.gene41431:CDS 35.0%
AATGAACAATTCACCGAGAA+AGG + chr1.4:78351510-78351529 None:intergenic 35.0%
ACTCAGATACGAAATATCCA+AGG + chr1.4:78351539-78351558 None:intergenic 35.0%
AGAAGAAAAGCCAAAGACTA+TGG + chr1.4:78351644-78351663 None:intergenic 35.0%
ATACTGAGTATTTGGAGACA+AGG + chr1.4:78352267-78352286 None:intergenic 35.0%
CATTGTTCTTTCTCCTTTCT+CGG - chr1.4:78351494-78351513 MS.gene41431:intron 35.0%
CTTTACAAACCAAACCAACA+TGG + chr1.4:78350853-78350872 None:intergenic 35.0%
GAAGAAAAGCCAAAGACTAT+GGG + chr1.4:78351643-78351662 None:intergenic 35.0%
GATGAGTGTTATCGAGATAA+AGG - chr1.4:78352568-78352587 MS.gene41431:CDS 35.0%
TAAATTTGGGGGAGGAAAAA+TGG + chr1.4:78351430-78351449 None:intergenic 35.0%
TAAGCTGCATACTGAGTATT+TGG + chr1.4:78352275-78352294 None:intergenic 35.0%
TCAGGTGTATGGTTAACTTT+GGG + chr1.4:78351798-78351817 None:intergenic 35.0%
TGAAATGCAGAGCTTTCAAT+TGG - chr1.4:78351293-78351312 MS.gene41431:intron 35.0%
TGTGCCCTGTAAATGTATAT+TGG - chr1.4:78351149-78351168 MS.gene41431:intron 35.0%
TGTTATTGAGGTTCAGATTC+AGG + chr1.4:78351816-78351835 None:intergenic 35.0%
TGTTCATAAGTGTAAGTGCT+AGG + chr1.4:78350897-78350916 None:intergenic 35.0%
TTATCTCGATAACACTCATC+TGG + chr1.4:78352568-78352587 None:intergenic 35.0%
TTCAGGTGTATGGTTAACTT+TGG + chr1.4:78351799-78351818 None:intergenic 35.0%
! TCTGGACTTCTTCATTTTCA+AGG + chr1.4:78352550-78352569 None:intergenic 35.0%
! TTGAATGTAACCAAGAGTGT+CGG + chr1.4:78350956-78350975 None:intergenic 35.0%
!! ATGATAGAGTTGATATCGGA+AGG + chr1.4:78350489-78350508 None:intergenic 35.0%
AAACCAACATGGTGGTTCAA+CGG + chr1.4:78350842-78350861 None:intergenic 40.0%
AAGGAAAGTCTTGGAAACGA+CGG + chr1.4:78350427-78350446 None:intergenic 40.0%
ACAATTACCGAAAACGTGTC+TGG - chr1.4:78350914-78350933 MS.gene41431:intron 40.0%
AGACGAAGATTAGCAACTTC+GGG + chr1.4:78352203-78352222 None:intergenic 40.0%
AGCAAATGCTCCTTCCAAAA+AGG - chr1.4:78350527-78350546 MS.gene41431:CDS 40.0%
AGGAAGAAAGTGATTCCAGA+CGG + chr1.4:78350469-78350488 None:intergenic 40.0%
AGTGTTATCGAGATAAAGGC+TGG - chr1.4:78352572-78352591 MS.gene41431:CDS 40.0%
ATGGGAGAGTTCTTCAATTC+AGG - chr1.4:78352524-78352543 MS.gene41431:CDS 40.0%
CAAGGGGAATTTCTTTCTTG+AGG - chr1.4:78352601-78352620 MS.gene41431:CDS 40.0%
CTCAAGAAAGAAATTCCCCT+TGG + chr1.4:78352603-78352622 None:intergenic 40.0%
CTTCCTGTGGATTTATCTGT+CGG - chr1.4:78352335-78352354 MS.gene41431:intron 40.0%
GACACACACAAACACAAACA+TGG + chr1.4:78351027-78351046 None:intergenic 40.0%
GACCAACATCACTGTTATTG+AGG + chr1.4:78351828-78351847 None:intergenic 40.0%
GATGATAGGTCGATCAGATA+GGG + chr1.4:78350565-78350584 None:intergenic 40.0%
GGATAGTTACACATTGACAG+CGG + chr1.4:78351006-78351025 None:intergenic 40.0%
GGGTTTGAAGATTTAGCAGA+AGG - chr1.4:78350348-78350367 MS.gene41431:CDS 40.0%
GTTTCCTTAATGAGGGGAAT+AGG + chr1.4:78351578-78351597 None:intergenic 40.0%
TACAAACCAAACCAACATGG+TGG + chr1.4:78350850-78350869 None:intergenic 40.0%
TAGATCTCTCGCCATTACTT+GGG - chr1.4:78351353-78351372 MS.gene41431:intron 40.0%
TGATCCTATTCCCCTCATTA+AGG - chr1.4:78351571-78351590 MS.gene41431:intron 40.0%
TGATGATAGGTCGATCAGAT+AGG + chr1.4:78350566-78350585 None:intergenic 40.0%
TTCTTGAGGGAATAGAAGTG+AGG - chr1.4:78352615-78352634 MS.gene41431:CDS 40.0%
TTGCTAATCTTCGTCTTGTG+TGG - chr1.4:78352207-78352226 MS.gene41431:intron 40.0%
! AGATAGAGAGCCTTTTTGGA+AGG + chr1.4:78350540-78350559 None:intergenic 40.0%
! CATCTCTGCAACTTTTGTGT+TGG - chr1.4:78352169-78352188 MS.gene41431:intron 40.0%
AAAATGGCCAACCTGGAATC+AGG + chr1.4:78351414-78351433 None:intergenic 45.0%
AAAGTGATTCCAGACGGCAT+CGG + chr1.4:78350463-78350482 None:intergenic 45.0%
ACACCGACAGATAAATCCAC+AGG + chr1.4:78352341-78352360 None:intergenic 45.0%
AGATCTCTCGCCATTACTTG+GGG - chr1.4:78351354-78351373 MS.gene41431:intron 45.0%
ATAAAGGCTGGTGAGACCAA+GGG - chr1.4:78352584-78352603 MS.gene41431:CDS 45.0%
ATGATGACCGCTATTGGATC+TGG - chr1.4:78351379-78351398 MS.gene41431:intron 45.0%
ATGGTGGTTCAACGGAACAA+CGG + chr1.4:78350834-78350853 None:intergenic 45.0%
CATCATCGACGATGCCAAAA+AGG - chr1.4:78350581-78350600 MS.gene41431:CDS 45.0%
CGACAGATAAATCCACAGGA+AGG + chr1.4:78352337-78352356 None:intergenic 45.0%
CGCAGACATGGAAGACTTTA+CGG - chr1.4:78352425-78352444 MS.gene41431:CDS 45.0%
CGTAAAGTCTTCCATGTCTG+CGG + chr1.4:78352427-78352446 None:intergenic 45.0%
CTAATCTTCGTCTTGTGTGG+TGG - chr1.4:78352210-78352229 MS.gene41431:intron 45.0%
CTAGATCTCTCGCCATTACT+TGG - chr1.4:78351352-78351371 MS.gene41431:intron 45.0%
GACGAAGATTAGCAACTTCG+GGG + chr1.4:78352202-78352221 None:intergenic 45.0%
GAGGTTCAGATTCAGGTGTA+TGG + chr1.4:78351809-78351828 None:intergenic 45.0%
GCAAGATGAACGACAATGAG+AGG - chr1.4:78351608-78351627 MS.gene41431:CDS 45.0%
GTCATCATCACCCCAAGTAA+TGG + chr1.4:78351367-78351386 None:intergenic 45.0%
GTCCTTGTGTGAGAAGTGAT+GGG - chr1.4:78352486-78352505 MS.gene41431:CDS 45.0%
GTGTTTGTGTGTGTCTGTGT+CGG - chr1.4:78351032-78351051 MS.gene41431:intron 45.0%
TAGTGGTCCAGATCCAATAG+CGG + chr1.4:78351389-78351408 None:intergenic 45.0%
TGGATCCAAATGTAGAACGC+AGG - chr1.4:78352396-78352415 MS.gene41431:CDS 45.0%
TTCTGCCTGCGTTCTACATT+TGG + chr1.4:78352404-78352423 None:intergenic 45.0%
TTGGCATCGTCGATGATGAT+AGG + chr1.4:78350579-78350598 None:intergenic 45.0%
! CTGCAACTTTTGTGTTGGAC+AGG - chr1.4:78352174-78352193 MS.gene41431:intron 45.0%
! GGCAAGATAGAGAGCCTTTT+TGG + chr1.4:78350544-78350563 None:intergenic 45.0%
! GTTGAACCACCATGTTGGTT+TGG - chr1.4:78350841-78350860 MS.gene41431:intron 45.0%
!! GAAGGAGCATTTGCTAGAGA+AGG + chr1.4:78350522-78350541 None:intergenic 45.0%
!! GATTTATCTGTCGGTGTCGA+AGG - chr1.4:78352344-78352363 MS.gene41431:intron 45.0%
!! TACATTTATTATTATTATTA+GGG - chr1.4:78350795-78350814 MS.gene41431:intron 5.0%
ACTGTTGTCACCGACACTCT+TGG - chr1.4:78350943-78350962 MS.gene41431:intron 50.0%
AGGAGTCGTACGAGACAGTA+TGG + chr1.4:78350385-78350404 None:intergenic 50.0%
AGGTTGCATGACAGAGTGGT+TGG - chr1.4:78352455-78352474 MS.gene41431:CDS 50.0%
AGTCGTACGAGACAGTATGG+AGG + chr1.4:78350382-78350401 None:intergenic 50.0%
CAACCTGGAATCAGGCATAG+TGG + chr1.4:78351406-78351425 None:intergenic 50.0%
CACCCATCACTTCTCACACA+AGG + chr1.4:78352491-78352510 None:intergenic 50.0%
CACTATGCCTGATTCCAGGT+TGG - chr1.4:78351404-78351423 MS.gene41431:intron 50.0%
CGTCCTTGTGTGAGAAGTGA+TGG - chr1.4:78352485-78352504 MS.gene41431:CDS 50.0%
GATAAAGGCTGGTGAGACCA+AGG - chr1.4:78352583-78352602 MS.gene41431:CDS 50.0%
GGGAATAGAAGTGAGGCCTA+AGG - chr1.4:78352622-78352641 MS.gene41431:CDS 50.0%
GGGTGGTTGGAGATTGAGAT+GGG - chr1.4:78352506-78352525 MS.gene41431:CDS 50.0%
GTTCCGTTGAACCACCATGT+TGG - chr1.4:78350836-78350855 MS.gene41431:intron 50.0%
TAAAGGCTGGTGAGACCAAG+GGG - chr1.4:78352585-78352604 MS.gene41431:CDS 50.0%
TCACTTCTCACACAAGGACG+CGG + chr1.4:78352485-78352504 None:intergenic 50.0%
TGGGTGGTTGGAGATTGAGA+TGG - chr1.4:78352505-78352524 MS.gene41431:CDS 50.0%
TGGGTTTGAGAACCTTCCTG+TGG - chr1.4:78352322-78352341 MS.gene41431:intron 50.0%
TGTGGTGGCTCGAAATTCGT+GGG - chr1.4:78352225-78352244 MS.gene41431:intron 50.0%
! ATTCCAGACGGCATCGGAAT+CGG + chr1.4:78350457-78350476 None:intergenic 50.0%
! CTTGTGTGAGAAGTGATGGG+TGG - chr1.4:78352489-78352508 MS.gene41431:CDS 50.0%
! TCGGACACCAGACACGTTTT+CGG + chr1.4:78350924-78350943 None:intergenic 50.0%
!! AGAGTGTCGGTGACAACAGT+CGG + chr1.4:78350943-78350962 None:intergenic 50.0%
!! TGTGAGAAGTGATGGGTGGT+TGG - chr1.4:78352493-78352512 MS.gene41431:CDS 50.0%
!! TTATCTGTCGGTGTCGAAGG+TGG - chr1.4:78352347-78352366 MS.gene41431:intron 50.0%
GAAGACTTTACGGTCGTGCG+AGG - chr1.4:78352435-78352454 MS.gene41431:CDS 55.0%
GGACCACTATGCCTGATTCC+AGG - chr1.4:78351400-78351419 MS.gene41431:intron 55.0%
GGCGGCAGAAAGGAAAGTCT+TGG + chr1.4:78350436-78350455 None:intergenic 55.0%
GGGAGGAAAAATGGCCAACC+TGG + chr1.4:78351421-78351440 None:intergenic 55.0%
GTGTGGTGGCTCGAAATTCG+TGG - chr1.4:78352224-78352243 MS.gene41431:intron 55.0%
TGCGAGGTTGCATGACAGAG+TGG - chr1.4:78352451-78352470 MS.gene41431:CDS 55.0%
! GGGGTGATGATGACCGCTAT+TGG - chr1.4:78351373-78351392 MS.gene41431:intron 55.0%
CATCGGAATCGGCGGCAGAA+AGG + chr1.4:78350446-78350465 None:intergenic 60.0%
CGTACGACTCCTGTTGACGC+CGG - chr1.4:78350393-78350412 MS.gene41431:CDS 60.0%
GGAAACGACGGAGAGTCTGC+CGG + chr1.4:78350415-78350434 None:intergenic 60.0%
CGCAGGCAGAACCGCAGACA+TGG - chr1.4:78352413-78352432 MS.gene41431:CDS 65.0%
GAGAGTCTGCCGGCGTCAAC+AGG + chr1.4:78350405-78350424 None:intergenic 65.0%
! CCAGACGGCATCGGAATCGG+CGG + chr1.4:78350454-78350473 None:intergenic 65.0%
!! CCGCCGATTCCGATGCCGTC+TGG - chr1.4:78350451-78350470 MS.gene41431:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 78350342 78352655 78350342 ID=MS.gene41431
chr1.4 mRNA 78350342 78352655 78350342 ID=MS.gene41431.t1;Parent=MS.gene41431
chr1.4 exon 78352395 78352655 78352395 ID=MS.gene41431.t1.exon1;Parent=MS.gene41431.t1
chr1.4 CDS 78352395 78352655 78352395 ID=cds.MS.gene41431.t1;Parent=MS.gene41431.t1
chr1.4 exon 78351576 78351694 78351576 ID=MS.gene41431.t1.exon2;Parent=MS.gene41431.t1
chr1.4 CDS 78351576 78351694 78351576 ID=cds.MS.gene41431.t1;Parent=MS.gene41431.t1
chr1.4 exon 78350342 78350801 78350342 ID=MS.gene41431.t1.exon3;Parent=MS.gene41431.t1
chr1.4 CDS 78350342 78350801 78350342 ID=cds.MS.gene41431.t1;Parent=MS.gene41431.t1
Gene Sequence

>MS.gene41431

ATGACAGGGTTTGAAGATTTAGCAGAAGGATGCATTTCCTCCATACTGTCTCGTACGACTCCTGTTGACGCCGGCAGACTCTCCGTCGTTTCCAAGACTTTCCTTTCTGCCGCCGATTCCGATGCCGTCTGGAATCACTTTCTTCCTTCCGATATCAACTCTATCATCTCACAGTCACCTTCTCTAGCAAATGCTCCTTCCAAAAAGGCTCTCTATCTTGCCCTATCTGATCGACCTATCATCATCGACGATGCCAAAAAGGTATCATCACATATTTCATCATCGTCTGAAATATTAGGGTTTATTATCGTTGATCATACGTAAACTTAATTGATTGTTCTTTCATGTTAGGGCTTAAGATATTGACTGAACATTGATCATCAGAATTCACTTCTGCATGTATCTATAAATTACTTGATCGCTTTGCAAATAACTTGTTTTATAATAATCTTGTACATTTATTATTATTATTAGGGTAGTGCAGCTGAGCCGTTGTTCCGTTGAACCACCATGTTGGTTTGGTTTGTAAAGATATTCGATAGATTAGCTCTACCTAGCACTTACACTTATGAACAATTACCGAAAACGTGTCTGGTGTCCGACTGTTGTCACCGACACTCTTGGTTACATTCAATTATGTCATTTCTTTTTTAAATAATTACCGCTGTCAATGTGTAACTATCCATGTTTGTGTTTGTGTGTGTCTGTGTCGGTGATTCATAGCATTAGATATATTATTATATAGGTACCCCTACAAATTAATCAAAATCAGTTAACGATTTTGTTTATTTGTTTGTGCTTTTAAATTGTGCCCTGTAAATGTATATTGGCTGAAGAAAGTCTGACACTATGCCTGTATTTTCTATATCTTCTCAATTGATTGCTGTAAAATATATGGTGATTTTTTAAATGCTTAGTTTGGAATGCTAATAATAAGCCTTTTGGGTATATTGAAATGCAGAGCTTTCAATTGGATAGAAAAAGTGGAAACAAGTGTTACATGCTTGCTGCTAGATCTCTCGCCATTACTTGGGGTGATGATGACCGCTATTGGATCTGGACCACTATGCCTGATTCCAGGTTGGCCATTTTTCCTCCCCCAAATTTACTCATTTTTATTGGTTTCTCCACCTTCTACCTTGTTTGTTTTAACATTGTTCTTTCTCCTTTCTCGGTGAATTGTTCATTCCATTTCCTTGGATATTTCGTATCTGAGTTTATACTTTGATTGATCCTATTCCCCTCATTAAGGAAACTTTCATCTATGCAAGATGAACGACAATGAGAGGTTGAATATACCCATAGTCTTTGGCTTTTCTTCTATGAAAGATGAAAAACAATGAGAAGTTGACTATACATAAAGAAGTTAAATGAAAATATTTTTCATTTCAGCTTCTCTCACTGTCTCTTCATTTTTCCTTCTAAGTGAATACTTCTTGTTAGACTATTCAATCCCAAAGTTAACCATACACCTGAATCTGAACCTCAATAACAGTGATGTTGGTCCACTGTCTAATAACTTTTTTTTATAGATAACAAACAATACAACTTAGTAACTGAGAAGTTTATCATAATCGATTACACTTGAAATAATTTAGTTATCATTGGTACAATATATGATAACTGATGTTTTTATTAGTTGAGCTGTTTCAAAGTTTTTTTGGTGAAAATATTTTGCTGTTATTACTCTTTTTGATGATGGAAACTTTGATTCAACTCGCAAATTTTAGTTGATGAGCTTGCATTGTTTGTGTACGTACACATGTATAAATATTCCATTTATGATGTTATGAATCCTTTTCAACTTTTTCTCAATTCTTGTATTCTCATCTCTGCAACTTTTGTGTTGGACAGGTTCCCCGAAGTTGCTAATCTTCGTCTTGTGTGGTGGCTCGAAATTCGTGGGATGATTAACAATCTTGCCTTGTCTCCAAATACTCAGTATGCAGCTTATCTTGTATACAAATTGATTGATGGCTATGGGTTTGAGAACCTTCCTGTGGATTTATCTGTCGGTGTCGAAGGTGGCCATAGTAGCACTAAAATTGTCTGTTTGGATCCAAATGTAGAACGCAGGCAGAACCGCAGACATGGAAGACTTTACGGTCGTGCGAGGTTGCATGACAGAGTGGTTGGATTACCGCGTCCTTGTGTGAGAAGTGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCTTCAATTCAGGCCTTGAAAATGAAGAAGTCCAGATGAGTGTTATCGAGATAAAGGCTGGTGAGACCAAGGGGAATTTCTTTCTTGAGGGAATAGAAGTGAGGCCTAAGGTAGACAATTAA

Protein sequence

>MS.gene41431.t1

MTGFEDLAEGCISSILSRTTPVDAGRLSVVSKTFLSAADSDAVWNHFLPSDINSIISQSPSLANAPSKKALYLALSDRPIIIDDAKKSFQLDRKSGNKCYMLAARSLAITWGDDDRYWIWTTMPDSRFPEVANLRLVWWLEIRGMINNLALSPNTQYAAYLVYKLIDGYGFENLPVDLSVGVEGGHSSTKIVCLDPNVERRQNRRHGRLYGRARLHDRVVGLPRPCVRSDGWLEIEMGEFFNSGLENEEVQMSVIEIKAGETKGNFFLEGIEVRPKVDN