Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49086.t1 | XP_013469665.1 | 93.9 | 279 | 13 | 2 | 1 | 279 | 1 | 275 | 1.60E-145 | 525.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49086.t1 | Q9ZVQ6 | 42.9 | 275 | 134 | 5 | 4 | 275 | 14 | 268 | 4.4e-59 | 229.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49086.t1 | G8A220 | 93.9 | 279 | 13 | 2 | 1 | 279 | 1 | 275 | 1.2e-145 | 525.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49086.t1 | MTR_1g100597 | 93.907 | 279 | 13 | 2 | 1 | 279 | 1 | 275 | 0.0 | 531 |
MS.gene49086.t1 | MTR_1g079370 | 73.188 | 276 | 63 | 1 | 1 | 276 | 1 | 265 | 6.46e-146 | 410 |
MS.gene49086.t1 | MTR_1g079180 | 74.194 | 279 | 55 | 4 | 1 | 276 | 1 | 265 | 6.29e-144 | 405 |
MS.gene49086.t1 | MTR_1g079260 | 70.423 | 284 | 70 | 3 | 1 | 279 | 1 | 275 | 2.53e-141 | 399 |
MS.gene49086.t1 | MTR_1g079230 | 69.643 | 280 | 80 | 2 | 1 | 279 | 1 | 276 | 8.52e-140 | 395 |
MS.gene49086.t1 | MTR_1g100613 | 80.417 | 240 | 47 | 0 | 20 | 259 | 5 | 244 | 1.41e-137 | 388 |
MS.gene49086.t1 | MTR_1g079460 | 69.504 | 282 | 70 | 2 | 1 | 279 | 1 | 269 | 2.77e-137 | 388 |
MS.gene49086.t1 | MTR_1g079200 | 70.819 | 281 | 60 | 4 | 1 | 276 | 1 | 264 | 4.26e-135 | 382 |
MS.gene49086.t1 | MTR_1g079380 | 71.942 | 278 | 67 | 1 | 1 | 278 | 1 | 267 | 1.53e-133 | 380 |
MS.gene49086.t1 | MTR_1g079850 | 69.014 | 284 | 83 | 3 | 1 | 279 | 1 | 284 | 6.26e-132 | 375 |
MS.gene49086.t1 | MTR_3g006850 | 63.934 | 305 | 80 | 5 | 3 | 279 | 16 | 318 | 1.34e-122 | 353 |
MS.gene49086.t1 | MTR_1g079250 | 65.734 | 286 | 86 | 6 | 1 | 279 | 1 | 281 | 2.50e-114 | 331 |
MS.gene49086.t1 | MTR_1g026510 | 61.168 | 291 | 96 | 7 | 1 | 279 | 1 | 286 | 1.94e-112 | 326 |
MS.gene49086.t1 | MTR_3g452600 | 61.594 | 276 | 91 | 2 | 4 | 279 | 10 | 270 | 6.70e-112 | 324 |
MS.gene49086.t1 | MTR_3g450990 | 55.442 | 294 | 96 | 4 | 4 | 279 | 10 | 286 | 1.41e-99 | 293 |
MS.gene49086.t1 | MTR_1g079410 | 55.396 | 278 | 105 | 4 | 5 | 276 | 9 | 273 | 5.67e-99 | 291 |
MS.gene49086.t1 | MTR_2g079100 | 58.608 | 273 | 92 | 4 | 3 | 273 | 8 | 261 | 6.82e-98 | 288 |
MS.gene49086.t1 | MTR_1g079350 | 54.355 | 287 | 108 | 6 | 1 | 276 | 1 | 275 | 1.08e-93 | 278 |
MS.gene49086.t1 | MTR_1g079340 | 52.667 | 300 | 104 | 8 | 1 | 276 | 40 | 325 | 4.47e-85 | 258 |
MS.gene49086.t1 | MTR_7g096300 | 58.397 | 262 | 83 | 5 | 1 | 256 | 1 | 242 | 1.85e-83 | 265 |
MS.gene49086.t1 | MTR_1g079140 | 47.508 | 301 | 129 | 6 | 4 | 279 | 13 | 309 | 1.88e-83 | 253 |
MS.gene49086.t1 | MTR_1g079400 | 47.872 | 282 | 122 | 3 | 5 | 276 | 13 | 279 | 1.34e-80 | 244 |
MS.gene49086.t1 | MTR_1g078470 | 60.104 | 193 | 61 | 3 | 84 | 276 | 8 | 184 | 8.51e-74 | 224 |
MS.gene49086.t1 | MTR_7g112550 | 44.291 | 289 | 137 | 10 | 2 | 276 | 5 | 283 | 7.72e-70 | 217 |
MS.gene49086.t1 | MTR_1g083580 | 40.860 | 279 | 158 | 5 | 2 | 276 | 6 | 281 | 2.83e-65 | 206 |
MS.gene49086.t1 | MTR_7g112560 | 39.711 | 277 | 145 | 7 | 4 | 277 | 1 | 258 | 3.78e-62 | 197 |
MS.gene49086.t1 | MTR_1g079240 | 57.368 | 190 | 59 | 4 | 87 | 276 | 12 | 179 | 3.25e-61 | 192 |
MS.gene49086.t1 | MTR_1g076870 | 70.149 | 134 | 35 | 2 | 128 | 256 | 2 | 135 | 1.97e-59 | 186 |
MS.gene49086.t1 | MTR_4g023570 | 37.319 | 276 | 131 | 7 | 4 | 276 | 1 | 237 | 3.85e-52 | 171 |
MS.gene49086.t1 | MTR_1g079210 | 66.667 | 123 | 40 | 1 | 129 | 250 | 7 | 129 | 6.89e-46 | 151 |
MS.gene49086.t1 | MTR_1g079130 | 44.444 | 189 | 92 | 2 | 101 | 276 | 1 | 189 | 1.52e-44 | 149 |
MS.gene49086.t1 | MTR_1g079350 | 60.584 | 137 | 41 | 3 | 1 | 128 | 1 | 133 | 2.22e-44 | 150 |
MS.gene49086.t1 | MTR_2g042540 | 65.714 | 105 | 34 | 2 | 1 | 103 | 1 | 105 | 2.47e-37 | 129 |
MS.gene49086.t1 | MTR_1g078460 | 71.264 | 87 | 25 | 0 | 1 | 87 | 64 | 150 | 8.35e-36 | 125 |
MS.gene49086.t1 | MTR_7g096310 | 56.061 | 132 | 50 | 3 | 57 | 186 | 38 | 163 | 3.13e-35 | 125 |
MS.gene49086.t1 | MTR_3g058640 | 54.867 | 113 | 38 | 1 | 128 | 240 | 7 | 106 | 4.07e-34 | 120 |
MS.gene49086.t1 | MTR_7g103380 | 26.316 | 285 | 173 | 5 | 6 | 275 | 21 | 283 | 9.47e-30 | 114 |
MS.gene49086.t1 | MTR_0113s0040 | 30.846 | 201 | 124 | 3 | 2 | 188 | 20 | 219 | 5.13e-24 | 98.6 |
MS.gene49086.t1 | MTR_1g101390 | 38.621 | 145 | 86 | 2 | 2 | 144 | 26 | 169 | 6.03e-23 | 95.9 |
MS.gene49086.t1 | MTR_1g079220 | 60.759 | 79 | 18 | 1 | 165 | 243 | 1 | 66 | 1.07e-22 | 89.4 |
MS.gene49086.t1 | MTR_4g083970 | 26.818 | 220 | 126 | 4 | 63 | 277 | 102 | 291 | 1.84e-20 | 89.0 |
MS.gene49086.t1 | MTR_0002s0020 | 30.539 | 167 | 106 | 3 | 6 | 165 | 24 | 187 | 1.04e-18 | 84.3 |
MS.gene49086.t1 | MTR_4g102770 | 33.333 | 144 | 92 | 2 | 6 | 146 | 21 | 163 | 6.86e-18 | 82.0 |
MS.gene49086.t1 | MTR_5g010800 | 30.137 | 146 | 95 | 4 | 6 | 147 | 19 | 161 | 7.84e-16 | 75.9 |
MS.gene49086.t1 | MTR_1g079390 | 72.000 | 50 | 12 | 2 | 222 | 271 | 8 | 55 | 3.74e-15 | 68.6 |
MS.gene49086.t1 | MTR_1g079190 | 73.171 | 41 | 11 | 0 | 228 | 268 | 134 | 174 | 2.38e-12 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49086.t1 | AT2G02360 | 42.909 | 275 | 134 | 5 | 4 | 275 | 14 | 268 | 2.03e-74 | 229 |
MS.gene49086.t1 | AT1G80110 | 43.542 | 271 | 134 | 6 | 6 | 275 | 3 | 255 | 1.12e-67 | 211 |
MS.gene49086.t1 | AT2G02240 | 42.336 | 274 | 138 | 5 | 4 | 275 | 61 | 316 | 1.33e-64 | 205 |
MS.gene49086.t1 | AT2G02340 | 42.446 | 278 | 142 | 5 | 4 | 275 | 36 | 301 | 1.87e-64 | 204 |
MS.gene49086.t1 | AT2G02230 | 37.540 | 309 | 156 | 7 | 4 | 279 | 32 | 336 | 3.30e-63 | 202 |
MS.gene49086.t1 | AT2G02250 | 41.667 | 276 | 138 | 8 | 4 | 275 | 47 | 303 | 4.97e-63 | 201 |
MS.gene49086.t1 | AT1G09155 | 41.935 | 279 | 152 | 6 | 7 | 276 | 3 | 280 | 6.84e-63 | 200 |
MS.gene49086.t1 | AT1G56250 | 41.429 | 280 | 154 | 5 | 7 | 277 | 4 | 282 | 9.68e-61 | 194 |
MS.gene49086.t1 | AT1G56240 | 41.007 | 278 | 154 | 5 | 7 | 275 | 4 | 280 | 3.05e-59 | 190 |
MS.gene49086.t1 | AT2G02350 | 37.410 | 278 | 153 | 7 | 2 | 275 | 22 | 282 | 9.51e-57 | 184 |
MS.gene49086.t1 | AT2G02310 | 35.507 | 276 | 159 | 4 | 4 | 276 | 45 | 304 | 1.13e-52 | 174 |
MS.gene49086.t1 | AT2G02320 | 37.545 | 277 | 146 | 7 | 6 | 275 | 42 | 298 | 3.19e-49 | 165 |
MS.gene49086.t1 | AT2G02300 | 34.875 | 281 | 142 | 9 | 4 | 276 | 34 | 281 | 2.48e-42 | 147 |
MS.gene49086.t1 | AT5G24560 | 42.188 | 192 | 98 | 4 | 4 | 192 | 3 | 184 | 2.83e-42 | 144 |
MS.gene49086.t1 | AT3G53000 | 28.179 | 291 | 171 | 7 | 3 | 278 | 20 | 287 | 3.14e-30 | 115 |
MS.gene49086.t1 | AT2G02350 | 33.520 | 179 | 101 | 6 | 101 | 275 | 1 | 165 | 2.70e-26 | 102 |
MS.gene49086.t1 | AT1G12710 | 25.517 | 290 | 164 | 7 | 3 | 275 | 27 | 281 | 2.10e-20 | 89.0 |
MS.gene49086.t1 | AT1G63090 | 30.097 | 206 | 125 | 6 | 3 | 192 | 25 | 227 | 2.57e-19 | 85.9 |
MS.gene49086.t1 | AT5G52120 | 24.749 | 299 | 165 | 8 | 1 | 275 | 18 | 280 | 1.57e-18 | 84.0 |
MS.gene49086.t1 | AT3G61060 | 31.915 | 141 | 93 | 2 | 6 | 144 | 27 | 166 | 3.66e-18 | 82.8 |
MS.gene49086.t1 | AT3G61060 | 30.496 | 141 | 96 | 1 | 6 | 144 | 27 | 167 | 2.81e-17 | 80.1 |
MS.gene49086.t1 | AT4G19840 | 29.319 | 191 | 102 | 7 | 89 | 276 | 85 | 245 | 4.40e-15 | 73.6 |
MS.gene49086.t1 | AT1G12710 | 25.581 | 301 | 192 | 8 | 3 | 275 | 27 | 323 | 1.91e-14 | 72.8 |
Find 80 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAGCTGCATACTGAGTATT+TGG | 0.255011 | 1.3:+69431191 | None:intergenic |
TTCTGCCTGCGTTCTACATT+TGG | 0.271945 | 1.3:+69431062 | None:intergenic |
CTTGTATACAAATTGATTGA+TGG | 0.301820 | 1.3:-69431167 | MS.gene49086:CDS |
ATGGGAGAGTTCTTCAATTC+AGG | 0.321358 | 1.3:-69430939 | MS.gene49086:CDS |
CATCATCGACGATGCCAAAA+AGG | 0.324659 | 1.3:-69433075 | MS.gene49086:intron |
CTAGATCTCTCGCTATTACT+TGG | 0.338529 | 1.3:-69432111 | MS.gene49086:CDS |
CGCAGACATGGAAGACTTTA+CGG | 0.338884 | 1.3:-69431038 | MS.gene49086:CDS |
AGCAAATGCTCCTTCCAAAA+AGG | 0.353184 | 1.3:-69433129 | MS.gene49086:CDS |
TAGCACTAAAATTGTCTGTT+TGG | 0.362941 | 1.3:-69431087 | MS.gene49086:CDS |
GATGAGTGTTATCGAGATAA+AGG | 0.385187 | 1.3:-69430895 | MS.gene49086:CDS |
AGACGAAGATTAGCAACTTC+GGG | 0.388577 | 1.3:+69431263 | None:intergenic |
TGAAATGCAGAGCTTTCAAT+TGG | 0.399907 | 1.3:-69432170 | MS.gene49086:intron |
GGACCACTATGCCTGATTCC+AGG | 0.401514 | 1.3:-69432063 | MS.gene49086:intron |
CCGCCGATTCCGATGCCGTC+TGG | 0.403257 | 1.3:-69433205 | MS.gene49086:CDS |
TAGATCTCTCGCTATTACTT+GGG | 0.415079 | 1.3:-69432110 | MS.gene49086:CDS |
GAGAGTCTGCCGGCGTCAAC+AGG | 0.416723 | 1.3:+69433254 | None:intergenic |
AGGAGTCGTACGAGACAGTA+TGG | 0.422103 | 1.3:+69433274 | None:intergenic |
AAGGGGAATTTCTTTCTTGA+GGG | 0.424911 | 1.3:-69430861 | MS.gene49086:CDS |
AAAATGGCCAACCTGGAATC+AGG | 0.426615 | 1.3:+69432052 | None:intergenic |
TGATGATAGGTCGATCAGAT+AGG | 0.426684 | 1.3:+69433093 | None:intergenic |
TTATCTCGATAACACTCATC+TGG | 0.440534 | 1.3:+69430898 | None:intergenic |
ATTCCAGACGGCATCGGAAT+CGG | 0.451722 | 1.3:+69433202 | None:intergenic |
GTTGCTTAATTGTCTACCTT+AGG | 0.451895 | 1.3:+69430825 | None:intergenic |
CGCAGGCAGAACCGCAGACA+TGG | 0.453913 | 1.3:-69431050 | MS.gene49086:CDS |
ATGATGACCGCTATTGGATC+TGG | 0.457353 | 1.3:-69432084 | MS.gene49086:CDS |
TTGGCATCGTCGATGATGAT+AGG | 0.465612 | 1.3:+69433080 | None:intergenic |
CAAGGGGAATTTCTTTCTTG+AGG | 0.468108 | 1.3:-69430862 | MS.gene49086:CDS |
TACAAATTGATTGATGGCTA+TGG | 0.469002 | 1.3:-69431161 | MS.gene49086:CDS |
GGGGTGATGATGACCGCTAT+TGG | 0.473829 | 1.3:-69432090 | MS.gene49086:CDS |
ACAAATTGATTGATGGCTAT+GGG | 0.489453 | 1.3:-69431160 | MS.gene49086:CDS |
CGTCCTTGTGTGAGAAGTGA+TGG | 0.489686 | 1.3:-69430978 | MS.gene49086:CDS |
CTCAAGAAAGAAATTCCCCT+TGG | 0.498320 | 1.3:+69430863 | None:intergenic |
ATGATAGAGTCGATGTCAGA+AGG | 0.501608 | 1.3:+69433170 | None:intergenic |
AAGACGAAGATTAGCAACTT+CGG | 0.509597 | 1.3:+69431262 | None:intergenic |
CTTCCTGTGGATTTATCTGT+CGG | 0.516064 | 1.3:-69431128 | MS.gene49086:CDS |
GGCGGCAGAAAGGAAAGTCT+TGG | 0.517109 | 1.3:+69433223 | None:intergenic |
TGATAGAGTCGATGTCAGAA+GGG | 0.519983 | 1.3:+69433171 | None:intergenic |
GGGTTTGAAGATTTAGCAGA+AGG | 0.520179 | 1.3:-69433308 | MS.gene49086:CDS |
GGGTGGTTGGAGATTGAGAT+GGG | 0.540728 | 1.3:-69430957 | MS.gene49086:CDS |
CATCGGAATCGGCGGCAGAA+AGG | 0.542303 | 1.3:+69433213 | None:intergenic |
TGGGTGGTTGGAGATTGAGA+TGG | 0.542699 | 1.3:-69430958 | MS.gene49086:CDS |
GTGTGGTGGCTCGAAATTCG+TGG | 0.547967 | 1.3:-69431239 | MS.gene49086:CDS |
TGGGTTTGAGAACCTTCCTG+TGG | 0.549562 | 1.3:-69431141 | MS.gene49086:CDS |
GATGATAGGTCGATCAGATA+GGG | 0.551413 | 1.3:+69433094 | None:intergenic |
TGTGAGAAGTGATGGGTGGT+TGG | 0.556044 | 1.3:-69430970 | MS.gene49086:CDS |
GATTTATCTGTCGGTGTCGA+AGG | 0.557631 | 1.3:-69431119 | MS.gene49086:CDS |
CTAATCTTCGTCTTGTGTGG+TGG | 0.562220 | 1.3:-69431253 | MS.gene49086:CDS |
TTGCTAATCTTCGTCTTGTG+TGG | 0.565369 | 1.3:-69431256 | MS.gene49086:CDS |
AGTGTTATCGAGATAAAGGC+TGG | 0.568289 | 1.3:-69430891 | MS.gene49086:CDS |
GGAAACGACGGAGAGTCTGC+CGG | 0.570360 | 1.3:+69433244 | None:intergenic |
GAAGGAGCATTTGCTAGAGA+AGG | 0.571483 | 1.3:+69433137 | None:intergenic |
CAACCTGGAATCAGGCATAG+TGG | 0.580151 | 1.3:+69432060 | None:intergenic |
GAAGACTTTACGGTCGTGCG+AGG | 0.580931 | 1.3:-69431028 | MS.gene49086:CDS |
GGGAATAGAAGTGAGGCCTA+AGG | 0.588625 | 1.3:-69430841 | MS.gene49086:CDS |
AGGTTGCATGACAGAGTGGT+AGG | 0.597534 | 1.3:-69431008 | MS.gene49086:CDS |
TTATCTGTCGGTGTCGAAGG+TGG | 0.597798 | 1.3:-69431116 | MS.gene49086:CDS |
CACCCATCACTTCTCACACA+AGG | 0.598274 | 1.3:+69430975 | None:intergenic |
ATAAAGGCTGGTGAGACCAA+GGG | 0.599634 | 1.3:-69430879 | MS.gene49086:CDS |
GATAAAGGCTGGTGAGACCA+AGG | 0.599999 | 1.3:-69430880 | MS.gene49086:CDS |
TTCTTGAGGGAATAGAAGTG+AGG | 0.602948 | 1.3:-69430848 | MS.gene49086:CDS |
TGTGGTGGCTCGAAATTCGT+GGG | 0.618223 | 1.3:-69431238 | MS.gene49086:CDS |
AGATCTCTCGCTATTACTTG+GGG | 0.621524 | 1.3:-69432109 | MS.gene49086:CDS |
CCAGACGGCATCGGAATCGG+CGG | 0.622067 | 1.3:+69433205 | None:intergenic |
GTCCTTGTGTGAGAAGTGAT+GGG | 0.633145 | 1.3:-69430977 | MS.gene49086:CDS |
ACACCGACAGATAAATCCAC+AGG | 0.642651 | 1.3:+69431125 | None:intergenic |
ATACTGAGTATTTGGAGACA+AGG | 0.643026 | 1.3:+69431199 | None:intergenic |
AAAGTGATTCCAGACGGCAT+CGG | 0.647589 | 1.3:+69433196 | None:intergenic |
TAAAGGCTGGTGAGACCAAG+GGG | 0.647680 | 1.3:-69430878 | MS.gene49086:CDS |
TCACTTCTCACACAAGGACG+CGG | 0.648694 | 1.3:+69430981 | None:intergenic |
TGGATCCAAATGTAGAACGC+AGG | 0.654508 | 1.3:-69431067 | MS.gene49086:CDS |
AAGGAAAGTCTTGGAAACGA+CGG | 0.661166 | 1.3:+69433232 | None:intergenic |
CGTAAAGTCTTCCATGTCTG+CGG | 0.661378 | 1.3:+69431039 | None:intergenic |
AGGGAGAAAGTGATTCCAGA+CGG | 0.665074 | 1.3:+69433190 | None:intergenic |
TGCGAGGTTGCATGACAGAG+TGG | 0.676261 | 1.3:-69431012 | MS.gene49086:CDS |
CGACAGATAAATCCACAGGA+AGG | 0.695590 | 1.3:+69431129 | None:intergenic |
GACGAAGATTAGCAACTTCG+GGG | 0.697062 | 1.3:+69431264 | None:intergenic |
CGTACGACTCCTGTTGACGC+CGG | 0.716965 | 1.3:-69433263 | MS.gene49086:CDS |
CTTGTGTGAGAAGTGATGGG+TGG | 0.722396 | 1.3:-69430974 | MS.gene49086:CDS |
TAGTGGTCCAGATCCAATAG+CGG | 0.737188 | 1.3:+69432077 | None:intergenic |
AGTCGTACGAGACAGTATGG+AGG | 0.760723 | 1.3:+69433277 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTAATTATTTAAAAAAGAAA+TGG | + | chr1.3:69431472-69431491 | None:intergenic | 10.0% |
!! | TACATTTATTAGTATTATTA+GGG | - | chr1.3:69431283-69431302 | MS.gene49086:intron | 10.0% |
!! | AAAAAGTAAAACAAAAAAAG+AGG | - | chr1.3:69431808-69431827 | MS.gene49086:intron | 15.0% |
!! | AATAAAAATGAGTAAATTTG+GGG | + | chr1.3:69432123-69432142 | None:intergenic | 15.0% |
!! | CAATAAAAATGAGTAAATTT+GGG | + | chr1.3:69432124-69432143 | None:intergenic | 15.0% |
!! | GTACATTTATTAGTATTATT+AGG | - | chr1.3:69431282-69431301 | MS.gene49086:intron | 15.0% |
!! | TGAAATAATTTAGTTATCAT+TGG | - | chr1.3:69432608-69432627 | MS.gene49086:intron | 15.0% |
!! | AAAAAAAAGTTATTAGACAG+TGG | + | chr1.3:69432531-69432550 | None:intergenic | 20.0% |
!! | ATAAAAATGAGTAAATTTGG+GGG | + | chr1.3:69432122-69432141 | None:intergenic | 20.0% |
!! | ATTGATTGCTGTAAAATATA+TGG | - | chr1.3:69431705-69431724 | MS.gene49086:intron | 20.0% |
!! | CCAATAAAAATGAGTAAATT+TGG | + | chr1.3:69432125-69432144 | None:intergenic | 20.0% |
!!! | ACTGATTTTGATTAATTTGT+AGG | + | chr1.3:69431583-69431602 | None:intergenic | 20.0% |
!!! | CCAAATTTACTCATTTTTAT+TGG | - | chr1.3:69432122-69432141 | MS.gene49086:CDS | 20.0% |
!!! | CTGATTTTGATTAATTTGTA+GGG | + | chr1.3:69431582-69431601 | None:intergenic | 20.0% |
!!! | TGATTTTGATTAATTTGTAG+GGG | + | chr1.3:69431581-69431600 | None:intergenic | 20.0% |
! | ATTGATTGTTCTTTCATGTT+AGG | - | chr1.3:69431159-69431178 | MS.gene49086:CDS | 25.0% |
! | CTTGTATACAAATTGATTGA+TGG | - | chr1.3:69432977-69432996 | MS.gene49086:intron | 25.0% |
! | GAACAATGTTAAAACAAACA+AGG | + | chr1.3:69432163-69432182 | None:intergenic | 25.0% |
! | GAATTGAGAAAAAGTTGAAA+AGG | + | chr1.3:69432821-69432840 | None:intergenic | 25.0% |
! | TGAGAAGATATAGAAAATAC+AGG | + | chr1.3:69431685-69431704 | None:intergenic | 25.0% |
! | TGCCATAATAAAAGAAATAG+CGG | - | chr1.3:69431854-69431873 | MS.gene49086:intron | 25.0% |
! | TTGATTGTTCTTTCATGTTA+GGG | - | chr1.3:69431160-69431179 | MS.gene49086:CDS | 25.0% |
! | TTTCAATTGGATAGAAAAAG+TGG | - | chr1.3:69431987-69432006 | MS.gene49086:intron | 25.0% |
!! | AATATGTGATGATACCTTTT+TGG | + | chr1.3:69431086-69431105 | None:intergenic | 25.0% |
!! | AATGCTAATAATAAGCCTTT+TGG | - | chr1.3:69431945-69431964 | MS.gene49086:intron | 25.0% |
!! | ATGCTAATAATAAGCCTTTT+GGG | - | chr1.3:69431946-69431965 | MS.gene49086:intron | 25.0% |
!! | GTTATTACTCTTTTTGATGT+TGG | - | chr1.3:69432702-69432721 | MS.gene49086:intron | 25.0% |
!!! | AACCGCTATTTCTTTTATTA+TGG | + | chr1.3:69431859-69431878 | None:intergenic | 25.0% |
!!! | CCTTTTTTAAATGCTTAGTT+CGG | - | chr1.3:69431922-69431941 | MS.gene49086:intron | 25.0% |
AATTGTTCATTCCATTTCCT+TGG | - | chr1.3:69432200-69432219 | MS.gene49086:intron | 30.0% | |
AGATGAAAGTTTCCTTAATG+AGG | + | chr1.3:69432267-69432286 | None:intergenic | 30.0% | |
ATACGAAATATCCAAGGAAA+TGG | + | chr1.3:69432214-69432233 | None:intergenic | 30.0% | |
ATGAAAGTTTCCTTAATGAG+GGG | + | chr1.3:69432265-69432284 | None:intergenic | 30.0% | |
CCGAACTAAGCATTTAAAAA+AGG | + | chr1.3:69431925-69431944 | None:intergenic | 30.0% | |
GATGAAAGTTTCCTTAATGA+GGG | + | chr1.3:69432266-69432285 | None:intergenic | 30.0% | |
GTTAAAACAAACAAGGTAGA+AGG | + | chr1.3:69432156-69432175 | None:intergenic | 30.0% | |
TAGCACTAAAATTGTCTGTT+TGG | - | chr1.3:69433057-69433076 | MS.gene49086:intron | 30.0% | |
TCAGCCAATATACATTTACA+GGG | + | chr1.3:69431644-69431663 | None:intergenic | 30.0% | |
TGCATTTCAATATACCCAAA+AGG | + | chr1.3:69431963-69431982 | None:intergenic | 30.0% | |
TTCAGCCAATATACATTTAC+AGG | + | chr1.3:69431645-69431664 | None:intergenic | 30.0% | |
TTGAATATACCCATAGTCTT+TGG | - | chr1.3:69432312-69432331 | MS.gene49086:intron | 30.0% | |
! | ACAAATTGATTGATGGCTAT+GGG | - | chr1.3:69432984-69433003 | MS.gene49086:intron | 30.0% |
! | TACAAATTGATTGATGGCTA+TGG | - | chr1.3:69432983-69433002 | MS.gene49086:intron | 30.0% |
! | TCATCATCGTCTGAAATATT+AGG | - | chr1.3:69431106-69431125 | MS.gene49086:CDS | 30.0% |
!! | ACAAGAAGTATTCACTTAGA+AGG | + | chr1.3:69432443-69432462 | None:intergenic | 30.0% |
!! | AGACAATTTTAGTGCTACTA+TGG | + | chr1.3:69433054-69433073 | None:intergenic | 30.0% |
!!! | ACTGCATTTTGTTATTCTTG+AGG | + | chr1.3:69431781-69431800 | None:intergenic | 30.0% |
!!! | GAGCTGTTTCAAAGTTTTTT+TGG | - | chr1.3:69432664-69432683 | MS.gene49086:intron | 30.0% |
AAAACAAACAAGGTAGAAGG+TGG | + | chr1.3:69432153-69432172 | None:intergenic | 35.0% | |
AAAATGAGTAAATTTGGGGG+AGG | + | chr1.3:69432119-69432138 | None:intergenic | 35.0% | |
AACCTCAATAACAGTGATGT+TGG | - | chr1.3:69432504-69432523 | MS.gene49086:intron | 35.0% | |
AAGACGAAGATTAGCAACTT+CGG | + | chr1.3:69432885-69432904 | None:intergenic | 35.0% | |
AAGGGGAATTTCTTTCTTGA+GGG | - | chr1.3:69433283-69433302 | MS.gene49086:CDS | 35.0% | |
AATGAACAATTCACCGAGAA+AGG | + | chr1.3:69432191-69432210 | None:intergenic | 35.0% | |
ACTCAGATACGAAATATCCA+AGG | + | chr1.3:69432220-69432239 | None:intergenic | 35.0% | |
AGAAAATACAGGCATAGTGT+CGG | + | chr1.3:69431674-69431693 | None:intergenic | 35.0% | |
AGAAGAAAAGCCAAAGACTA+TGG | + | chr1.3:69432325-69432344 | None:intergenic | 35.0% | |
ATACTGAGTATTTGGAGACA+AGG | + | chr1.3:69432948-69432967 | None:intergenic | 35.0% | |
CATTGTTCTTTCTCCTTTCT+CGG | - | chr1.3:69432175-69432194 | MS.gene49086:intron | 35.0% | |
CTTTACAAACCAAACCAACA+TGG | + | chr1.3:69431341-69431360 | None:intergenic | 35.0% | |
GAAGAAAAGCCAAAGACTAT+GGG | + | chr1.3:69432324-69432343 | None:intergenic | 35.0% | |
GATGAGTGTTATCGAGATAA+AGG | - | chr1.3:69433249-69433268 | MS.gene49086:CDS | 35.0% | |
TAAATTTGGGGGAGGAAAAA+TGG | + | chr1.3:69432111-69432130 | None:intergenic | 35.0% | |
TAAGCTGCATACTGAGTATT+TGG | + | chr1.3:69432956-69432975 | None:intergenic | 35.0% | |
TAGATCTCTCGCTATTACTT+GGG | - | chr1.3:69432034-69432053 | MS.gene49086:intron | 35.0% | |
TCAGGTGTATGGTTAACTTT+GGG | + | chr1.3:69432479-69432498 | None:intergenic | 35.0% | |
TGAAATGCAGAGCTTTCAAT+TGG | - | chr1.3:69431974-69431993 | MS.gene49086:intron | 35.0% | |
TGATCATATTCCCCTCATTA+AGG | - | chr1.3:69432252-69432271 | MS.gene49086:intron | 35.0% | |
TGTGCCCTGTAAATGTATAT+TGG | - | chr1.3:69431637-69431656 | MS.gene49086:intron | 35.0% | |
TGTTATTGAGGTTCAGATTC+AGG | + | chr1.3:69432497-69432516 | None:intergenic | 35.0% | |
TGTTCATAAGTGTAAGTGCT+AGG | + | chr1.3:69431385-69431404 | None:intergenic | 35.0% | |
TTATCTCGATAACACTCATC+TGG | + | chr1.3:69433249-69433268 | None:intergenic | 35.0% | |
TTCAGGTGTATGGTTAACTT+TGG | + | chr1.3:69432480-69432499 | None:intergenic | 35.0% | |
! | TCTGGACTTCTTCATTTTCA+AGG | + | chr1.3:69433231-69433250 | None:intergenic | 35.0% |
! | TTGAATGTAACCAAGAGTGT+CGG | + | chr1.3:69431444-69431463 | None:intergenic | 35.0% |
AAACCAACATGGTGGTTCAA+CGG | + | chr1.3:69431330-69431349 | None:intergenic | 40.0% | |
AACCCACATGTTTGGTAAGT+GGG | + | chr1.3:69431835-69431854 | None:intergenic | 40.0% | |
AAGGAAAGTCTTGGAAACGA+CGG | + | chr1.3:69430915-69430934 | None:intergenic | 40.0% | |
ACAATTACCGAAAACGTGTC+TGG | - | chr1.3:69431402-69431421 | MS.gene49086:intron | 40.0% | |
AGACGAAGATTAGCAACTTC+GGG | + | chr1.3:69432884-69432903 | None:intergenic | 40.0% | |
AGATCTCTCGCTATTACTTG+GGG | - | chr1.3:69432035-69432054 | MS.gene49086:intron | 40.0% | |
AGCAAATGCTCCTTCCAAAA+AGG | - | chr1.3:69431015-69431034 | MS.gene49086:CDS | 40.0% | |
AGTGTTATCGAGATAAAGGC+TGG | - | chr1.3:69433253-69433272 | MS.gene49086:CDS | 40.0% | |
ATGATAGAGTCGATGTCAGA+AGG | + | chr1.3:69430977-69430996 | None:intergenic | 40.0% | |
ATGGGAGAGTTCTTCAATTC+AGG | - | chr1.3:69433205-69433224 | MS.gene49086:CDS | 40.0% | |
ATTATGGCAACCCACATGTT+TGG | + | chr1.3:69431843-69431862 | None:intergenic | 40.0% | |
CAAGGGGAATTTCTTTCTTG+AGG | - | chr1.3:69433282-69433301 | MS.gene49086:CDS | 40.0% | |
CTAGATCTCTCGCTATTACT+TGG | - | chr1.3:69432033-69432052 | MS.gene49086:intron | 40.0% | |
CTCAAGAAAGAAATTCCCCT+TGG | + | chr1.3:69433284-69433303 | None:intergenic | 40.0% | |
CTTCCTGTGGATTTATCTGT+CGG | - | chr1.3:69433016-69433035 | MS.gene49086:intron | 40.0% | |
GACACACACAAACACAAACA+TGG | + | chr1.3:69431515-69431534 | None:intergenic | 40.0% | |
GACCAACATCACTGTTATTG+AGG | + | chr1.3:69432509-69432528 | None:intergenic | 40.0% | |
GATGATAGGTCGATCAGATA+GGG | + | chr1.3:69431053-69431072 | None:intergenic | 40.0% | |
GGATAGTTACACATTGACAG+CGG | + | chr1.3:69431494-69431513 | None:intergenic | 40.0% | |
GGGTTTGAAGATTTAGCAGA+AGG | - | chr1.3:69430836-69430855 | MS.gene49086:CDS | 40.0% | |
TACAAACCAAACCAACATGG+TGG | + | chr1.3:69431338-69431357 | None:intergenic | 40.0% | |
TGATAGAGTCGATGTCAGAA+GGG | + | chr1.3:69430976-69430995 | None:intergenic | 40.0% | |
TGATGATAGGTCGATCAGAT+AGG | + | chr1.3:69431054-69431073 | None:intergenic | 40.0% | |
TTCTTGAGGGAATAGAAGTG+AGG | - | chr1.3:69433296-69433315 | MS.gene49086:CDS | 40.0% | |
TTGCTAATCTTCGTCTTGTG+TGG | - | chr1.3:69432888-69432907 | MS.gene49086:intron | 40.0% | |
! | AGATAGAGAGCCTTTTTGGA+AGG | + | chr1.3:69431028-69431047 | None:intergenic | 40.0% |
AAAATGGCCAACCTGGAATC+AGG | + | chr1.3:69432095-69432114 | None:intergenic | 45.0% | |
AAAGTGATTCCAGACGGCAT+CGG | + | chr1.3:69430951-69430970 | None:intergenic | 45.0% | |
ACACCGACAGATAAATCCAC+AGG | + | chr1.3:69433022-69433041 | None:intergenic | 45.0% | |
AGGGAGAAAGTGATTCCAGA+CGG | + | chr1.3:69430957-69430976 | None:intergenic | 45.0% | |
ATAAAGGCTGGTGAGACCAA+GGG | - | chr1.3:69433265-69433284 | MS.gene49086:CDS | 45.0% | |
ATGATGACCGCTATTGGATC+TGG | - | chr1.3:69432060-69432079 | MS.gene49086:intron | 45.0% | |
ATGGTGGTTCAACGGAACAA+CGG | + | chr1.3:69431322-69431341 | None:intergenic | 45.0% | |
CAACCCACATGTTTGGTAAG+TGG | + | chr1.3:69431836-69431855 | None:intergenic | 45.0% | |
CATCATCGACGATGCCAAAA+AGG | - | chr1.3:69431069-69431088 | MS.gene49086:CDS | 45.0% | |
CATCTCTGCAACTTCTGTGT+TGG | - | chr1.3:69432850-69432869 | MS.gene49086:intron | 45.0% | |
CGACAGATAAATCCACAGGA+AGG | + | chr1.3:69433018-69433037 | None:intergenic | 45.0% | |
CGCAGACATGGAAGACTTTA+CGG | - | chr1.3:69433106-69433125 | MS.gene49086:CDS | 45.0% | |
CGTAAAGTCTTCCATGTCTG+CGG | + | chr1.3:69433108-69433127 | None:intergenic | 45.0% | |
CTAATCTTCGTCTTGTGTGG+TGG | - | chr1.3:69432891-69432910 | MS.gene49086:intron | 45.0% | |
GACGAAGATTAGCAACTTCG+GGG | + | chr1.3:69432883-69432902 | None:intergenic | 45.0% | |
GAGGTTCAGATTCAGGTGTA+TGG | + | chr1.3:69432490-69432509 | None:intergenic | 45.0% | |
GCAAGATGAACGACAATGAG+AGG | - | chr1.3:69432289-69432308 | MS.gene49086:intron | 45.0% | |
GTCCCACTTACCAAACATGT+GGG | - | chr1.3:69431830-69431849 | MS.gene49086:intron | 45.0% | |
GTCCTTGTGTGAGAAGTGAT+GGG | - | chr1.3:69433167-69433186 | MS.gene49086:CDS | 45.0% | |
GTGTTTGTGTGTGTCTGTGT+CGG | - | chr1.3:69431520-69431539 | MS.gene49086:intron | 45.0% | |
TAGTGGTCCAGATCCAATAG+CGG | + | chr1.3:69432070-69432089 | None:intergenic | 45.0% | |
TGGATCCAAATGTAGAACGC+AGG | - | chr1.3:69433077-69433096 | MS.gene49086:CDS | 45.0% | |
TTCTGCCTGCGTTCTACATT+TGG | + | chr1.3:69433085-69433104 | None:intergenic | 45.0% | |
TTGGCATCGTCGATGATGAT+AGG | + | chr1.3:69431067-69431086 | None:intergenic | 45.0% | |
! | GGCAAGATAGAGAGCCTTTT+TGG | + | chr1.3:69431032-69431051 | None:intergenic | 45.0% |
! | GTTGAACCACCATGTTGGTT+TGG | - | chr1.3:69431329-69431348 | MS.gene49086:intron | 45.0% |
!! | GAAGGAGCATTTGCTAGAGA+AGG | + | chr1.3:69431010-69431029 | None:intergenic | 45.0% |
!! | GATTTATCTGTCGGTGTCGA+AGG | - | chr1.3:69433025-69433044 | MS.gene49086:intron | 45.0% |
!! | CATTAAATATATTATTAAAT+AGG | - | chr1.3:69431553-69431572 | MS.gene49086:intron | 5.0% |
ACTGTTGTCACCGACACTCT+TGG | - | chr1.3:69431431-69431450 | MS.gene49086:intron | 50.0% | |
AGGAGTCGTACGAGACAGTA+TGG | + | chr1.3:69430873-69430892 | None:intergenic | 50.0% | |
AGGTTGCATGACAGAGTGGT+AGG | - | chr1.3:69433136-69433155 | MS.gene49086:CDS | 50.0% | |
AGTCGTACGAGACAGTATGG+AGG | + | chr1.3:69430870-69430889 | None:intergenic | 50.0% | |
CAACCTGGAATCAGGCATAG+TGG | + | chr1.3:69432087-69432106 | None:intergenic | 50.0% | |
CACCCATCACTTCTCACACA+AGG | + | chr1.3:69433172-69433191 | None:intergenic | 50.0% | |
CACTATGCCTGATTCCAGGT+TGG | - | chr1.3:69432085-69432104 | MS.gene49086:CDS | 50.0% | |
CGTCCTTGTGTGAGAAGTGA+TGG | - | chr1.3:69433166-69433185 | MS.gene49086:CDS | 50.0% | |
CTGCAACTTCTGTGTTGGAC+AGG | - | chr1.3:69432855-69432874 | MS.gene49086:intron | 50.0% | |
GATAAAGGCTGGTGAGACCA+AGG | - | chr1.3:69433264-69433283 | MS.gene49086:CDS | 50.0% | |
GGGAATAGAAGTGAGGCCTA+AGG | - | chr1.3:69433303-69433322 | MS.gene49086:CDS | 50.0% | |
GGGTGGTTGGAGATTGAGAT+GGG | - | chr1.3:69433187-69433206 | MS.gene49086:CDS | 50.0% | |
GGTCCCACTTACCAAACATG+TGG | - | chr1.3:69431829-69431848 | MS.gene49086:intron | 50.0% | |
GTTCCGTTGAACCACCATGT+TGG | - | chr1.3:69431324-69431343 | MS.gene49086:intron | 50.0% | |
TAAAGGCTGGTGAGACCAAG+GGG | - | chr1.3:69433266-69433285 | MS.gene49086:CDS | 50.0% | |
TCACTTCTCACACAAGGACG+CGG | + | chr1.3:69433166-69433185 | None:intergenic | 50.0% | |
TGGGTGGTTGGAGATTGAGA+TGG | - | chr1.3:69433186-69433205 | MS.gene49086:CDS | 50.0% | |
TGGGTTTGAGAACCTTCCTG+TGG | - | chr1.3:69433003-69433022 | MS.gene49086:intron | 50.0% | |
TGTGGTGGCTCGAAATTCGT+GGG | - | chr1.3:69432906-69432925 | MS.gene49086:intron | 50.0% | |
! | ATTCCAGACGGCATCGGAAT+CGG | + | chr1.3:69430945-69430964 | None:intergenic | 50.0% |
! | CTTGTGTGAGAAGTGATGGG+TGG | - | chr1.3:69433170-69433189 | MS.gene49086:CDS | 50.0% |
! | TCGGACACCAGACACGTTTT+CGG | + | chr1.3:69431412-69431431 | None:intergenic | 50.0% |
!! | AGAGTGTCGGTGACAACAGT+CGG | + | chr1.3:69431431-69431450 | None:intergenic | 50.0% |
!! | TGTGAGAAGTGATGGGTGGT+TGG | - | chr1.3:69433174-69433193 | MS.gene49086:CDS | 50.0% |
!! | TTATCTGTCGGTGTCGAAGG+TGG | - | chr1.3:69433028-69433047 | MS.gene49086:intron | 50.0% |
GAAGACTTTACGGTCGTGCG+AGG | - | chr1.3:69433116-69433135 | MS.gene49086:CDS | 55.0% | |
GGACCACTATGCCTGATTCC+AGG | - | chr1.3:69432081-69432100 | MS.gene49086:CDS | 55.0% | |
GGCGGCAGAAAGGAAAGTCT+TGG | + | chr1.3:69430924-69430943 | None:intergenic | 55.0% | |
GGGAGGAAAAATGGCCAACC+TGG | + | chr1.3:69432102-69432121 | None:intergenic | 55.0% | |
GTGTGGTGGCTCGAAATTCG+TGG | - | chr1.3:69432905-69432924 | MS.gene49086:intron | 55.0% | |
TGCGAGGTTGCATGACAGAG+TGG | - | chr1.3:69433132-69433151 | MS.gene49086:CDS | 55.0% | |
! | GGGGTGATGATGACCGCTAT+TGG | - | chr1.3:69432054-69432073 | MS.gene49086:intron | 55.0% |
CATCGGAATCGGCGGCAGAA+AGG | + | chr1.3:69430934-69430953 | None:intergenic | 60.0% | |
CGTACGACTCCTGTTGACGC+CGG | - | chr1.3:69430881-69430900 | MS.gene49086:CDS | 60.0% | |
GGAAACGACGGAGAGTCTGC+CGG | + | chr1.3:69430903-69430922 | None:intergenic | 60.0% | |
CGCAGGCAGAACCGCAGACA+TGG | - | chr1.3:69433094-69433113 | MS.gene49086:CDS | 65.0% | |
GAGAGTCTGCCGGCGTCAAC+AGG | + | chr1.3:69430893-69430912 | None:intergenic | 65.0% | |
! | CCAGACGGCATCGGAATCGG+CGG | + | chr1.3:69430942-69430961 | None:intergenic | 65.0% |
!! | CCGCCGATTCCGATGCCGTC+TGG | - | chr1.3:69430939-69430958 | MS.gene49086:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 69430830 | 69433336 | 69430830 | ID=MS.gene49086 |
chr1.3 | mRNA | 69430830 | 69433336 | 69430830 | ID=MS.gene49086.t1;Parent=MS.gene49086 |
chr1.3 | exon | 69433076 | 69433336 | 69433076 | ID=MS.gene49086.t1.exon1;Parent=MS.gene49086.t1 |
chr1.3 | CDS | 69433076 | 69433336 | 69433076 | ID=cds.MS.gene49086.t1;Parent=MS.gene49086.t1 |
chr1.3 | exon | 69432064 | 69432182 | 69432064 | ID=MS.gene49086.t1.exon2;Parent=MS.gene49086.t1 |
chr1.3 | CDS | 69432064 | 69432182 | 69432064 | ID=cds.MS.gene49086.t1;Parent=MS.gene49086.t1 |
chr1.3 | exon | 69430830 | 69431289 | 69430830 | ID=MS.gene49086.t1.exon3;Parent=MS.gene49086.t1 |
chr1.3 | CDS | 69430830 | 69431289 | 69430830 | ID=cds.MS.gene49086.t1;Parent=MS.gene49086.t1 |
Gene Sequence |
Protein sequence |