AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005020.t1 MTR_1g079260 93.455 275 17 1 1 274 1 275 0.0 535
MS.gene005020.t1 MTR_1g100597 72.464 276 73 2 1 274 1 275 3.22e-141 398
MS.gene005020.t1 MTR_1g079370 70.956 272 71 3 1 271 1 265 3.24e-141 397
MS.gene005020.t1 MTR_1g079180 70.909 275 66 6 1 271 1 265 6.74e-133 377
MS.gene005020.t1 MTR_1g079250 69.751 281 78 4 1 274 1 281 2.39e-131 374
MS.gene005020.t1 MTR_1g079460 69.928 276 70 3 1 272 1 267 5.03e-131 372
MS.gene005020.t1 MTR_1g079380 72.794 272 66 3 1 271 1 265 1.41e-130 372
MS.gene005020.t1 MTR_1g026510 64.685 286 89 5 1 274 1 286 4.79e-128 365
MS.gene005020.t1 MTR_1g079200 67.518 274 76 5 1 271 1 264 2.27e-124 355
MS.gene005020.t1 MTR_1g079850 64.561 285 89 5 1 274 1 284 4.93e-121 347
MS.gene005020.t1 MTR_1g079230 63.899 277 96 4 1 274 1 276 4.19e-116 334
MS.gene005020.t1 MTR_1g100613 68.571 245 70 3 16 254 1 244 1.82e-113 327
MS.gene005020.t1 MTR_3g006850 59.344 305 91 8 2 274 15 318 7.69e-106 310
MS.gene005020.t1 MTR_3g452600 61.852 270 89 7 4 271 10 267 2.49e-102 299
MS.gene005020.t1 MTR_1g079410 57.554 278 102 6 2 272 6 274 3.83e-100 294
MS.gene005020.t1 MTR_1g079140 52.881 295 111 7 4 271 13 306 4.55e-97 287
MS.gene005020.t1 MTR_1g079350 55.197 279 113 6 1 271 1 275 1.19e-92 275
MS.gene005020.t1 MTR_3g450990 55.944 286 96 9 4 271 10 283 1.05e-89 268
MS.gene005020.t1 MTR_2g079100 57.249 269 97 6 3 268 8 261 4.46e-88 263
MS.gene005020.t1 MTR_1g079400 50.526 285 111 5 2 271 10 279 2.33e-87 261
MS.gene005020.t1 MTR_7g112550 47.535 284 130 7 2 271 5 283 4.60e-79 241
MS.gene005020.t1 MTR_7g096300 57.692 260 83 8 1 251 1 242 1.85e-78 252
MS.gene005020.t1 MTR_1g079340 50.676 296 111 10 1 271 40 325 8.84e-76 234
MS.gene005020.t1 MTR_1g083580 43.929 280 139 7 4 271 8 281 6.51e-72 222
MS.gene005020.t1 MTR_1g078470 62.222 180 57 3 92 271 16 184 2.00e-71 218
MS.gene005020.t1 MTR_7g112560 42.279 272 138 7 4 271 1 257 5.35e-63 199
MS.gene005020.t1 MTR_1g079130 51.852 189 73 6 101 271 1 189 2.67e-53 172
MS.gene005020.t1 MTR_1g079240 51.351 185 73 3 87 271 12 179 5.34e-53 171
MS.gene005020.t1 MTR_4g023570 38.971 272 127 8 4 271 1 237 1.69e-52 171
MS.gene005020.t1 MTR_1g076870 63.043 138 33 4 128 251 2 135 3.95e-48 157
MS.gene005020.t1 MTR_1g079350 56.051 157 61 3 1 152 1 154 6.41e-48 159
MS.gene005020.t1 MTR_2g042540 64.762 105 35 2 1 103 1 105 1.23e-35 124
MS.gene005020.t1 MTR_1g078460 71.264 87 25 0 1 87 64 150 9.28e-35 123
MS.gene005020.t1 MTR_1g079210 57.258 124 45 3 129 245 7 129 4.64e-33 118
MS.gene005020.t1 MTR_7g096310 50.676 148 65 3 40 185 21 162 8.83e-33 118
MS.gene005020.t1 MTR_3g058640 53.211 109 42 2 128 236 7 106 3.74e-27 102
MS.gene005020.t1 MTR_4g083970 29.515 227 126 8 52 271 91 290 4.94e-26 103
MS.gene005020.t1 MTR_7g103380 26.502 283 174 6 6 272 21 285 1.12e-25 103
MS.gene005020.t1 MTR_0113s0040 24.825 286 172 5 2 272 20 277 1.21e-24 100
MS.gene005020.t1 MTR_1g101390 29.185 233 149 4 2 219 26 257 1.41e-24 100
MS.gene005020.t1 MTR_5g010800 35.374 147 86 5 6 147 19 161 7.61e-21 89.7
MS.gene005020.t1 MTR_0002s0020 27.962 211 132 3 6 197 24 233 4.63e-20 87.8
MS.gene005020.t1 MTR_4g102770 25.532 282 168 4 6 272 21 275 3.11e-19 85.5
MS.gene005020.t1 MTR_1g079220 55.405 74 24 2 165 238 1 65 1.42e-18 78.6
MS.gene005020.t1 MTR_1g079390 72.000 50 13 1 217 266 7 55 1.95e-18 77.4
MS.gene005020.t1 MTR_1g079840 42.400 125 22 2 142 266 20 94 4.41e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005020.t1 AT2G02250 45.725 269 132 4 4 270 47 303 3.66e-78 239
MS.gene005020.t1 AT2G02240 44.526 274 139 3 2 274 59 320 6.99e-76 234
MS.gene005020.t1 AT2G02360 42.491 273 137 5 2 270 12 268 2.21e-75 231
MS.gene005020.t1 AT2G02230 41.234 308 141 7 4 274 32 336 3.72e-75 233
MS.gene005020.t1 AT1G80110 46.617 266 126 5 7 270 4 255 2.96e-72 223
MS.gene005020.t1 AT2G02340 42.500 280 140 6 1 270 33 301 1.11e-71 223
MS.gene005020.t1 AT1G09155 43.369 279 143 6 7 271 3 280 4.08e-69 216
MS.gene005020.t1 AT1G56250 43.369 279 143 6 7 271 4 281 4.56e-63 200
MS.gene005020.t1 AT1G56240 43.165 278 143 6 7 270 4 280 6.41e-63 199
MS.gene005020.t1 AT2G02350 38.686 274 150 7 2 270 22 282 7.78e-56 182
MS.gene005020.t1 AT2G02310 36.364 275 159 5 2 272 43 305 2.06e-54 178
MS.gene005020.t1 AT2G02320 39.493 276 137 9 6 270 42 298 8.39e-53 174
MS.gene005020.t1 AT2G02300 37.500 280 137 10 2 272 32 282 9.78e-47 158
MS.gene005020.t1 AT5G24560 51.773 141 65 2 4 144 3 140 2.06e-44 149
MS.gene005020.t1 AT5G24560 59.184 49 20 0 224 272 145 193 1.01e-14 71.2
MS.gene005020.t1 AT3G53000 27.972 286 167 9 6 273 23 287 6.66e-28 109
MS.gene005020.t1 AT2G02350 34.286 175 100 5 101 270 1 165 1.51e-24 97.4
MS.gene005020.t1 AT4G19850 29.787 188 98 5 92 271 15 176 2.85e-21 88.6
MS.gene005020.t1 AT4G19850 29.787 188 98 5 92 271 57 218 3.79e-21 89.4
MS.gene005020.t1 AT1G12710 27.556 225 144 5 6 214 30 251 1.11e-19 86.7
MS.gene005020.t1 AT3G61060 25.177 282 169 10 6 272 27 281 6.75e-19 84.7
MS.gene005020.t1 AT1G33920 28.729 181 99 5 96 271 9 164 8.74e-19 81.6
MS.gene005020.t1 AT5G52120 27.273 209 129 4 1 188 18 224 5.70e-18 82.0
MS.gene005020.t1 AT3G61060 24.468 282 172 9 6 272 27 282 1.00e-17 81.3
MS.gene005020.t1 AT1G63090 27.602 221 139 6 6 209 28 244 1.46e-17 80.9
MS.gene005020.t1 AT4G19840 30.270 185 98 8 92 272 89 246 5.13e-17 78.6
MS.gene005020.t1 AT4G19850 29.605 152 75 4 92 237 57 182 2.94e-13 67.8
MS.gene005020.t1 AT1G12710 28.481 158 107 3 6 160 30 184 1.45e-12 67.0

Find 72 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGACTTCTTCATCTTCT+AGG 0.172241 1.3:+56320205 None:intergenic
TAAGTTACGTACAGAGTATT+TGG 0.193175 1.3:+56320465 None:intergenic
CTAGATCTCTTGCCATTACT+TGG 0.259697 1.3:-56324301 MS.gene005020:CDS
CATCATCGACAATGGTAAAA+AGG 0.276610 1.3:-56324482 MS.gene005020:intron
CGGCCGATTCCGACGCTGTT+TGG 0.287452 1.3:-56324612 MS.gene005020:CDS
TTAAGAGCAAACCTGGATTC+AGG 0.296897 1.3:+56324242 None:intergenic
AATGAGTGTTATTGATATAA+AGG 0.301571 1.3:-56320184 MS.gene005020:CDS
TTACCATTGTCGATGATGAT+AGG 0.322166 1.3:+56324487 None:intergenic
AGCCAACATTCCTGCCAAAA+AGG 0.323343 1.3:-56324536 MS.gene005020:CDS
TTATATCAATAACACTCATT+TGG 0.327990 1.3:+56320187 None:intergenic
CTGAACTTCTTCATGTGTGT+TGG 0.371115 1.3:-56320527 MS.gene005020:CDS
GACAGCCTTTGAAGAATTAC+CGG 0.371280 1.3:-56324719 MS.gene005020:CDS
TAGCAGTCCAGTTCCAATAT+TGG 0.371863 1.3:+56324267 None:intergenic
AAGTTACGTACAGAGTATTT+GGG 0.374400 1.3:+56320466 None:intergenic
TGAAGAAGTTCAGCAACTTC+AGG 0.399127 1.3:+56320537 None:intergenic
TTGTTGAAGGAATAGAAGTT+AGG 0.404080 1.3:-56320137 MS.gene005020:CDS
GTTGCTTAATGGTCTTCCTT+AGG 0.404567 1.3:+56320114 None:intergenic
GGGGTGACACTGACCAATAT+TGG 0.414125 1.3:-56324280 MS.gene005020:CDS
CAGCCATCGCTTCTAACATT+AGG 0.421791 1.3:+56320261 None:intergenic
TTGATATAAAGGGTGGTCAT+TGG 0.423881 1.3:-56320173 MS.gene005020:CDS
AAGAGAGGTTTCTTTGTTGA+AGG 0.432696 1.3:-56320150 MS.gene005020:CDS
TTTCAATTGGAGAGAAAGAG+TGG 0.437567 1.3:-56324347 MS.gene005020:CDS
ACACTGACCAATATTGGAAC+TGG 0.437942 1.3:-56324274 MS.gene005020:CDS
TAGATCTCTTGCCATTACTT+GGG 0.440419 1.3:-56324300 MS.gene005020:CDS
TGCAATCTTAATACTCTGTT+GGG 0.448837 1.3:+56320288 None:intergenic
TTGCAATCTTAATACTCTGT+TGG 0.450777 1.3:+56320287 None:intergenic
CGGTGCCTACGTCTCGCGTT+TGG 0.458821 1.3:+56320333 None:intergenic
ATGAGTGTTATTGATATAAA+GGG 0.461847 1.3:-56320183 MS.gene005020:CDS
ATTCCAAACAGCGTCGGAAT+CGG 0.465611 1.3:+56324609 None:intergenic
CACTAAAATTGTCTGTTTAG+CGG 0.473911 1.3:-56320358 MS.gene005020:CDS
ATTGCCGCGATGCAACCTTC+CGG 0.476904 1.3:+56324700 None:intergenic
TACCATTGTCGATGATGATA+GGG 0.481342 1.3:+56324488 None:intergenic
GAGATGGGAGAGTTCTTCTC+AGG 0.483764 1.3:-56320228 MS.gene005020:CDS
ATGATAGATGAGATATCAGA+AGG 0.493286 1.3:+56324577 None:intergenic
GAGTATTTGGGGACAAGGCA+AGG 0.505989 1.3:+56320478 None:intergenic
CGTCCTAATGTTAGAAGCGA+TGG 0.506737 1.3:-56320264 MS.gene005020:CDS
AAGGGTGGTCATTGGAAGAG+AGG 0.516527 1.3:-56320165 MS.gene005020:CDS
AGGAATAGAAGTTAGGCCTA+AGG 0.529851 1.3:-56320130 MS.gene005020:CDS
AGATCTCTTGCCATTACTTG+GGG 0.535874 1.3:-56324299 MS.gene005020:CDS
GGACTGCTATGCCTGAATCC+AGG 0.538247 1.3:-56324253 MS.gene005020:intron
TTCAAGATGATCAATGCCTA+TGG 0.539201 1.3:-56320435 MS.gene005020:CDS
TGATAGATGAGATATCAGAA+GGG 0.545185 1.3:+56324578 None:intergenic
GTCAGTGTCACCCCAAGTAA+TGG 0.546460 1.3:+56324289 None:intergenic
ACCTTCCGGTAATTCTTCAA+AGG 0.547313 1.3:+56324714 None:intergenic
GCAGGAATGTTGGCTAGGGA+AGG 0.549550 1.3:+56324544 None:intergenic
GAGAGTCTGCCAGCGTCGAG+TGG 0.557616 1.3:+56324661 None:intergenic
CCGTAGCAGAATTATAGTTA+CGG 0.558146 1.3:-56320313 MS.gene005020:CDS
TTTGGCAGGAATGTTGGCTA+GGG 0.561559 1.3:+56324540 None:intergenic
TGTTAGAAGCGATGGCTGGT+TGG 0.561669 1.3:-56320256 MS.gene005020:CDS
GTGTGTTGGCTTGAAATTCG+TGG 0.568809 1.3:-56320513 MS.gene005020:CDS
AAGAAAATTCTTAGAAACGA+GGG 0.571835 1.3:+56324639 None:intergenic
CTAATGTTAGAAGCGATGGC+TGG 0.579392 1.3:-56320260 MS.gene005020:CDS
CGCCCTATCATCATCGACAA+TGG 0.582859 1.3:-56324490 MS.gene005020:CDS
GGCTGGTTGGAGATTGAGAT+GGG 0.584901 1.3:-56320243 MS.gene005020:CDS
GCCTTTGAAGAATTACCGGA+AGG 0.593951 1.3:-56324715 MS.gene005020:CDS
ATATCAACTGATAACTCCAC+AGG 0.597089 1.3:+56320399 None:intergenic
TGGCTGGTTGGAGATTGAGA+TGG 0.597171 1.3:-56320244 MS.gene005020:CDS
TGTGTTGGCTTGAAATTCGT+GGG 0.601350 1.3:-56320512 MS.gene005020:CDS
AGTATTTGGGGACAAGGCAA+GGG 0.607982 1.3:+56320479 None:intergenic
CCGTAACTATAATTCTGCTA+CGG 0.609178 1.3:+56320313 None:intergenic
AGTGTTATTGATATAAAGGG+TGG 0.610510 1.3:-56320180 MS.gene005020:CDS
AGGATAGTACTCAAATCCAT+AGG 0.611119 1.3:+56320419 None:intergenic
AGTACAACTCCACTCGACGC+TGG 0.620670 1.3:-56324670 MS.gene005020:CDS
TGGATTTGAGTACTATCCTG+TGG 0.623491 1.3:-56320415 MS.gene005020:CDS
CGGATCCAAACGCGAGACGT+AGG 0.638605 1.3:-56320338 MS.gene005020:CDS
GTACAGAGTATTTGGGGACA+AGG 0.644660 1.3:+56320473 None:intergenic
GAGTTATCAGTTGATATCAA+AGG 0.645051 1.3:-56320393 MS.gene005020:CDS
AAAGCGATTCCAAACAGCGT+CGG 0.655239 1.3:+56324603 None:intergenic
TTATCAGTTGATATCAAAGG+TGG 0.662875 1.3:-56320390 MS.gene005020:CDS
AGTTACGTACAGAGTATTTG+GGG 0.668148 1.3:+56320467 None:intergenic
AAAGAAAATTCTTAGAAACG+AGG 0.688137 1.3:+56324638 None:intergenic
ATTACCGGAAGGTTGCATCG+CGG 0.779652 1.3:-56324704 MS.gene005020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTTTATTAAATGTA+AGG - chr1.3:56321641-56321660 MS.gene005020:intron 10.0%
!!! ATTAAGCATTGAAAAAAAAT+AGG + chr1.3:56322274-56322293 None:intergenic 15.0%
!!! ATTTTTATAAATGTTATCCA+TGG - chr1.3:56321813-56321832 MS.gene005020:intron 15.0%
!!! CTAAAATATCTAAAACTATT+GGG + chr1.3:56324087-56324106 None:intergenic 15.0%
!!! TATTCCATTATTTTTACTAT+GGG - chr1.3:56322384-56322403 MS.gene005020:intron 15.0%
!!! TCTAAAATATCTAAAACTAT+TGG + chr1.3:56324088-56324107 None:intergenic 15.0%
!! AAAAAACTCATAGTTATAGA+TGG + chr1.3:56323090-56323109 None:intergenic 20.0%
!! AAAAACTCATAGTTATAGAT+GGG + chr1.3:56323089-56323108 None:intergenic 20.0%
!! AAAATCAGAAAAAAGAAAGT+TGG + chr1.3:56322615-56322634 None:intergenic 20.0%
!! AAATGAAATTCTATGTTGTT+TGG + chr1.3:56322677-56322696 None:intergenic 20.0%
!! ATATCATAAATTGTGATGTT+TGG - chr1.3:56322736-56322755 MS.gene005020:intron 20.0%
!! ATATCCATGGATAAAATAAA+CGG - chr1.3:56321354-56321373 MS.gene005020:intron 20.0%
!! GATAAACTTCTAAGTTATAT+TGG + chr1.3:56324155-56324174 None:intergenic 20.0%
!! GGTTATTTATGTAATTTACT+CGG + chr1.3:56321464-56321483 None:intergenic 20.0%
!! GTAAAATCACAAAGAAAAAA+TGG + chr1.3:56323684-56323703 None:intergenic 20.0%
!! TAGCTAAAATTTAGAAACAA+AGG + chr1.3:56321766-56321785 None:intergenic 20.0%
!! TATCATAAATTGTGATGTTT+GGG - chr1.3:56322737-56322756 MS.gene005020:intron 20.0%
!! TTAAACAATTTAGTCATACT+TGG - chr1.3:56324191-56324210 MS.gene005020:intron 20.0%
!! TTATATCAATAACACTCATT+TGG + chr1.3:56324656-56324675 None:intergenic 20.0%
!! TTTCTCGAATATTATTGAAT+TGG - chr1.3:56320403-56320422 MS.gene005020:CDS 20.0%
!!! AAAGACCATTTTAAATTTCA+AGG - chr1.3:56323234-56323253 MS.gene005020:intron 20.0%
!!! AAGACCATTTTAAATTTCAA+GGG - chr1.3:56323235-56323254 MS.gene005020:intron 20.0%
!!! AATGAGTGTTATTGATATAA+AGG - chr1.3:56324656-56324675 MS.gene005020:CDS 20.0%
!!! ATACATACAGACTTATTTTT+TGG + chr1.3:56323504-56323523 None:intergenic 20.0%
!!! ATGAGTGTTATTGATATAAA+GGG - chr1.3:56324657-56324676 MS.gene005020:CDS 20.0%
!!! ATTCCATTATTTTTACTATG+GGG - chr1.3:56322385-56322404 MS.gene005020:intron 20.0%
!!! CATAGTAAAAATAATGGAAT+AGG + chr1.3:56322385-56322404 None:intergenic 20.0%
!!! CTATTCCATTATTTTTACTA+TGG - chr1.3:56322383-56322402 MS.gene005020:intron 20.0%
!!! CTTTTTTCTGATTTTAATTG+TGG - chr1.3:56322620-56322639 MS.gene005020:intron 20.0%
!!! TAACAATTATGAAAAAGCAT+AGG + chr1.3:56323129-56323148 None:intergenic 20.0%
!!! TACATACAGACTTATTTTTT+GGG + chr1.3:56323503-56323522 None:intergenic 20.0%
! AAAGAAAATTCTTAGAAACG+AGG + chr1.3:56320205-56320224 None:intergenic 25.0%
! AAGAAAATTCTTAGAAACGA+GGG + chr1.3:56320204-56320223 None:intergenic 25.0%
! ACATCCCTTGAAATTTAAAA+TGG + chr1.3:56323242-56323261 None:intergenic 25.0%
! ATAATTGTTAGATACGTTCT+CGG - chr1.3:56323139-56323158 MS.gene005020:intron 25.0%
! ATCATAAATTGTGATGTTTG+GGG - chr1.3:56322738-56322757 MS.gene005020:intron 25.0%
! CGGATTTCATATTTATCTAA+CGG - chr1.3:56321916-56321935 MS.gene005020:intron 25.0%
! GAAAATAGTTTACAAAAGAG+AGG - chr1.3:56320763-56320782 MS.gene005020:intron 25.0%
! GAATCCAAAATCTAATGATT+TGG + chr1.3:56322238-56322257 None:intergenic 25.0%
! GATATGTTAATAGATATCCA+TGG - chr1.3:56321341-56321360 MS.gene005020:intron 25.0%
! GCATTGAAAAAAAATAGGAT+TGG + chr1.3:56322269-56322288 None:intergenic 25.0%
! TAATTTACTCGGTTTAATAG+CGG + chr1.3:56321453-56321472 None:intergenic 25.0%
! TAATTTGGCAGTTCTTAAAT+GGG + chr1.3:56323042-56323061 None:intergenic 25.0%
! TCTCATGTTGAAAAGAAATA+AGG - chr1.3:56320737-56320756 MS.gene005020:intron 25.0%
! TGCCTTTCAAATATCAAAAA+GGG + chr1.3:56323542-56323561 None:intergenic 25.0%
! TTAACAAGTATTCACTTAGA+AGG + chr1.3:56323330-56323349 None:intergenic 25.0%
!! ATTATTGAATTGGTCAGTTT+TGG - chr1.3:56320413-56320432 MS.gene005020:CDS 25.0%
!! GCTAATGGACATATATAATT+AGG + chr1.3:56322647-56322666 None:intergenic 25.0%
!! TATTATTGGCTAGCAAAAAA+GGG - chr1.3:56323180-56323199 MS.gene005020:intron 25.0%
!! TGAAATGTAGAGTTTTCAAT+TGG - chr1.3:56320480-56320499 MS.gene005020:CDS 25.0%
!! TGATCCAAATCATTAGATTT+TGG - chr1.3:56322231-56322250 MS.gene005020:intron 25.0%
!! TTATTATTGGCTAGCAAAAA+AGG - chr1.3:56323179-56323198 MS.gene005020:intron 25.0%
!! TTTGTGATTTTACTTTGTCA+TGG - chr1.3:56323691-56323710 MS.gene005020:intron 25.0%
!!! AAATCCGTTTATTTTATCCA+TGG + chr1.3:56321361-56321380 None:intergenic 25.0%
!!! GATTTTGAAACACTTATCTA+TGG + chr1.3:56321246-56321265 None:intergenic 25.0%
!!! TTCTAAGAATTTTCTTTCTG+CGG - chr1.3:56320208-56320227 MS.gene005020:CDS 25.0%
AAAAGAAACTGTACAGATGA+AGG + chr1.3:56322209-56322228 None:intergenic 30.0%
AAGCAATATAGACAACTACT+TGG + chr1.3:56323856-56323875 None:intergenic 30.0%
AATGCCAATATCTCTTGAAT+CGG - chr1.3:56322833-56322852 MS.gene005020:intron 30.0%
AATTTACTCGGTTTAATAGC+GGG + chr1.3:56321452-56321471 None:intergenic 30.0%
ACAGAAACATCATCACAAAA+TGG + chr1.3:56322487-56322506 None:intergenic 30.0%
ACCACCAAAAGTTGAAAATA+TGG + chr1.3:56321146-56321165 None:intergenic 30.0%
AGAAAATTTAAGAGCAAACC+TGG + chr1.3:56320608-56320627 None:intergenic 30.0%
AGAAACATCATCACAAAATG+GGG + chr1.3:56322485-56322504 None:intergenic 30.0%
AGACCCCATAGTAAAAATAA+TGG + chr1.3:56322391-56322410 None:intergenic 30.0%
AGTTATTACCCTCCTTTAAA+AGG - chr1.3:56321536-56321555 MS.gene005020:intron 30.0%
AGTTGCAAAGATAAGAATAC+AGG + chr1.3:56324257-56324276 None:intergenic 30.0%
ATATTCGAGAAATCAGTAGT+TGG + chr1.3:56320395-56320414 None:intergenic 30.0%
ATCAGTTTGAACTTGATTGA+AGG + chr1.3:56322332-56322351 None:intergenic 30.0%
ATCGAAAATACAACTTGGAA+TGG - chr1.3:56322157-56322176 MS.gene005020:intron 30.0%
ATGATAGATGAGATATCAGA+AGG + chr1.3:56320266-56320285 None:intergenic 30.0%
CACTAAAATTGTCTGTTTAG+CGG - chr1.3:56324482-56324501 MS.gene005020:intron 30.0%
CAGAAACATCATCACAAAAT+GGG + chr1.3:56322486-56322505 None:intergenic 30.0%
CTAATTTGGCAGTTCTTAAA+TGG + chr1.3:56323043-56323062 None:intergenic 30.0%
GAAAAAATGGTAACATGTAG+CGG + chr1.3:56323671-56323690 None:intergenic 30.0%
GACTACATGATAAAAGATCT+AGG + chr1.3:56322187-56322206 None:intergenic 30.0%
GATTCTATTTCCTATGTTAG+TGG - chr1.3:56321068-56321087 MS.gene005020:intron 30.0%
GCCTTTCAAATATCAAAAAG+GGG + chr1.3:56323541-56323560 None:intergenic 30.0%
GTGCCTTTCAAATATCAAAA+AGG + chr1.3:56323543-56323562 None:intergenic 30.0%
TAAGAATACAGGAACAATGT+AGG + chr1.3:56324246-56324265 None:intergenic 30.0%
TAGGAAGTTGAATGATATTG+AGG + chr1.3:56321485-56321504 None:intergenic 30.0%
TAGGCTCATCAACTAAAATT+TGG + chr1.3:56324227-56324246 None:intergenic 30.0%
TATTCGAGAAATCAGTAGTT+GGG + chr1.3:56320394-56320413 None:intergenic 30.0%
TGATAGATGAGATATCAGAA+GGG + chr1.3:56320265-56320284 None:intergenic 30.0%
TGCAATCTTAATACTCTGTT+GGG + chr1.3:56324555-56324574 None:intergenic 30.0%
TTAAGAATGCTAATTAGCGT+TGG - chr1.3:56320452-56320471 MS.gene005020:CDS 30.0%
TTAGGATACAGAAGCTAATT+TGG + chr1.3:56323057-56323076 None:intergenic 30.0%
TTCACTTAGAAGGAAATATG+AGG + chr1.3:56323320-56323339 None:intergenic 30.0%
TTCATATTTATCTAACGGAG+TGG - chr1.3:56321921-56321940 MS.gene005020:intron 30.0%
TTCTATCCACAATTATCATG+AGG - chr1.3:56323874-56323893 MS.gene005020:intron 30.0%
TTGCAATCTTAATACTCTGT+TGG + chr1.3:56324556-56324575 None:intergenic 30.0%
TTGTTGAAGGAATAGAAGTT+AGG - chr1.3:56324703-56324722 MS.gene005020:CDS 30.0%
TTTAACTACCCGCTAATTAA+TGG - chr1.3:56321381-56321400 MS.gene005020:intron 30.0%
! AAGTTACGTACAGAGTATTT+GGG + chr1.3:56324377-56324396 None:intergenic 30.0%
! AGTGTTATTGATATAAAGGG+TGG - chr1.3:56324660-56324679 MS.gene005020:CDS 30.0%
! CAACTTTTGTGCACATATTT+TGG - chr1.3:56324272-56324291 MS.gene005020:CDS 30.0%
! GAGTTATCAGTTGATATCAA+AGG - chr1.3:56324447-56324466 MS.gene005020:intron 30.0%
! TAAAGTATCATAATGCACAC+AGG - chr1.3:56322521-56322540 MS.gene005020:intron 30.0%
! TAAGTTACGTACAGAGTATT+TGG + chr1.3:56324378-56324397 None:intergenic 30.0%
! TCATGAACCTAAGCAATTTT+AGG - chr1.3:56320996-56321015 MS.gene005020:intron 30.0%
! TCCCCTTTTTGATATTTGAA+AGG - chr1.3:56323537-56323556 MS.gene005020:intron 30.0%
! TCGTGAAATTTTGTCCAATA+TGG - chr1.3:56324033-56324052 MS.gene005020:intron 30.0%
! TTATCAGTTGATATCAAAGG+TGG - chr1.3:56324450-56324469 MS.gene005020:intron 30.0%
!! ATTTGGGTATTTTTACCAGA+AGG + chr1.3:56322005-56322024 None:intergenic 30.0%
!! TTTCACTTCCTTTTAAAGGA+GGG + chr1.3:56321547-56321566 None:intergenic 30.0%
!! TTTGGGTATTTTTACCAGAA+GGG + chr1.3:56322004-56322023 None:intergenic 30.0%
!!! AGACAATTTTAGTGCTACTT+TGG + chr1.3:56324476-56324495 None:intergenic 30.0%
!!! TTTTTTTAAATCATGCCCAC+TGG + chr1.3:56320844-56320863 None:intergenic 30.0%
AAAAGGAAGTGAAAGTGGTT+GGG - chr1.3:56321553-56321572 MS.gene005020:intron 35.0%
AACAACAAGCTTAGTAAGTG+AGG + chr1.3:56320793-56320812 None:intergenic 35.0%
AAGAGAGCCTAAAATTGCTT+AGG + chr1.3:56321006-56321025 None:intergenic 35.0%
AAGAGAGGTTTCTTTGTTGA+AGG - chr1.3:56324690-56324709 MS.gene005020:CDS 35.0%
ACAACAAGCTTAGTAAGTGA+GGG + chr1.3:56320792-56320811 None:intergenic 35.0%
ACAATTATCATGAGGCAATG+AGG - chr1.3:56323882-56323901 MS.gene005020:intron 35.0%
ACCAATAAATCTACTGTCAG+TGG - chr1.3:56323716-56323735 MS.gene005020:intron 35.0%
ACTCATAGTTATAGATGGGT+TGG + chr1.3:56323085-56323104 None:intergenic 35.0%
ACTTCATGTGCTTGAGATTT+GGG + chr1.3:56322021-56322040 None:intergenic 35.0%
ACTTGGTTGTCCCAATATAA+GGG + chr1.3:56323839-56323858 None:intergenic 35.0%
AGGATAGTACTCAAATCCAT+AGG + chr1.3:56324424-56324443 None:intergenic 35.0%
ATAATGCACACAGGAATCTA+GGG - chr1.3:56322530-56322549 MS.gene005020:intron 35.0%
ATATCAACTGATAACTCCAC+AGG + chr1.3:56324444-56324463 None:intergenic 35.0%
ATCCGTATCCATTAATTAGC+GGG + chr1.3:56321392-56321411 None:intergenic 35.0%
CAATCAGCAGTTAGTAAAGA+AGG - chr1.3:56321174-56321193 MS.gene005020:intron 35.0%
CAATGAGGAATGTAGAAAAC+TGG - chr1.3:56323897-56323916 MS.gene005020:intron 35.0%
CATCATCGACAATGGTAAAA+AGG - chr1.3:56320358-56320377 MS.gene005020:CDS 35.0%
CATCCGTATCCATTAATTAG+CGG + chr1.3:56321393-56321412 None:intergenic 35.0%
CCAAAAGTTGAAAATATGGC+AGG + chr1.3:56321142-56321161 None:intergenic 35.0%
CCAACTTCAACCCTTATATT+GGG - chr1.3:56323826-56323845 MS.gene005020:intron 35.0%
CCGTAACTATAATTCTGCTA+CGG + chr1.3:56324530-56324549 None:intergenic 35.0%
CCGTAGCAGAATTATAGTTA+CGG - chr1.3:56324527-56324546 MS.gene005020:CDS 35.0%
CGACATTCCTGCATTATTAT+TGG - chr1.3:56323166-56323185 MS.gene005020:intron 35.0%
CTAAAACTATTGGGACTTTC+AGG + chr1.3:56324078-56324097 None:intergenic 35.0%
CTATTGTACTGAGAATCAAC+TGG - chr1.3:56321111-56321130 MS.gene005020:intron 35.0%
CTGTTATTGAGGTTCAGATT+CGG + chr1.3:56323382-56323401 None:intergenic 35.0%
CTTCTTTACTAACTGCTGAT+TGG + chr1.3:56321176-56321195 None:intergenic 35.0%
CTTGCATCGAAAATACAACT+TGG - chr1.3:56322152-56322171 MS.gene005020:intron 35.0%
GAATCATTCAAGCCCATTAA+TGG + chr1.3:56321053-56321072 None:intergenic 35.0%
GATAACACTCACAATACCTA+GGG + chr1.3:56321516-56321535 None:intergenic 35.0%
GCCGAAATAAAGCCATTAAT+GGG - chr1.3:56321038-56321057 MS.gene005020:intron 35.0%
GGAGAGTAGAAAAACAAAAC+TGG + chr1.3:56322999-56323018 None:intergenic 35.0%
GGGAATTCAGTACAACTTAA+GGG + chr1.3:56322465-56322484 None:intergenic 35.0%
TAAAAGGAAGTGAAAGTGGT+TGG - chr1.3:56321552-56321571 MS.gene005020:intron 35.0%
TACCATTGTCGATGATGATA+GGG + chr1.3:56320355-56320374 None:intergenic 35.0%
TACTATGGGGTCTTTAGATT+AGG - chr1.3:56322398-56322417 MS.gene005020:intron 35.0%
TACTTGGTTGTCCCAATATA+AGG + chr1.3:56323840-56323859 None:intergenic 35.0%
TAGATCTCTTGCCATTACTT+GGG - chr1.3:56320540-56320559 MS.gene005020:CDS 35.0%
TCATTGCCTCATGATAATTG+TGG + chr1.3:56323883-56323902 None:intergenic 35.0%
TCCAACTTCAACCCTTATAT+TGG - chr1.3:56323825-56323844 MS.gene005020:intron 35.0%
TCCACTGACAGTAGATTTAT+TGG + chr1.3:56323720-56323739 None:intergenic 35.0%
TGAAACACTTATCTATGGCA+TGG + chr1.3:56321241-56321260 None:intergenic 35.0%
TGATAACACTCACAATACCT+AGG + chr1.3:56321517-56321536 None:intergenic 35.0%
TGATAGCCAAGTTAATCACT+TGG + chr1.3:56323779-56323798 None:intergenic 35.0%
TGATGTGAAATTCCCTTAGT+TGG + chr1.3:56322876-56322895 None:intergenic 35.0%
TGCCGAAATAAAGCCATTAA+TGG - chr1.3:56321037-56321056 MS.gene005020:intron 35.0%
TGTTATTGAGGTTCAGATTC+GGG + chr1.3:56323381-56323400 None:intergenic 35.0%
TTACCATTGTCGATGATGAT+AGG + chr1.3:56320356-56320375 None:intergenic 35.0%
TTAGTAAAGAAGGTTTGCCT+AGG - chr1.3:56321184-56321203 MS.gene005020:intron 35.0%
TTCAAAATCCATAGCCACTA+GGG - chr1.3:56321257-56321276 MS.gene005020:intron 35.0%
TTCAAGATGATCAATGCCTA+TGG - chr1.3:56324405-56324424 MS.gene005020:intron 35.0%
TTGATATAAAGGGTGGTCAT+TGG - chr1.3:56324667-56324686 MS.gene005020:CDS 35.0%
TTGCTAGCCAATAATAATGC+AGG + chr1.3:56323176-56323195 None:intergenic 35.0%
TTTCAAAATCCATAGCCACT+AGG - chr1.3:56321256-56321275 MS.gene005020:intron 35.0%
TTTCAATTGGAGAGAAAGAG+TGG - chr1.3:56320493-56320512 MS.gene005020:CDS 35.0%
TTTGGACTTCTTCATCTTCT+AGG + chr1.3:56324638-56324657 None:intergenic 35.0%
! AAAATTTTCACGCTCATGAG+TGG - chr1.3:56320694-56320713 MS.gene005020:intron 35.0%
! AAAGCCGATTCAAGAGATAT+TGG + chr1.3:56322840-56322859 None:intergenic 35.0%
! AACTGATTTCCTTCCAACTA+AGG - chr1.3:56322860-56322879 MS.gene005020:intron 35.0%
! AACTGGATTTCCTTTTTGTG+AGG - chr1.3:56323914-56323933 MS.gene005020:intron 35.0%
! ACTCATGAGCGTGAAAATTT+TGG + chr1.3:56320695-56320714 None:intergenic 35.0%
! ACTGATTTCCTTCCAACTAA+GGG - chr1.3:56322861-56322880 MS.gene005020:intron 35.0%
! ACTGGATTTCCTTTTTGTGA+GGG - chr1.3:56323915-56323934 MS.gene005020:intron 35.0%
! AGCAAGATAGAGATCCTTTT+TGG + chr1.3:56320321-56320340 None:intergenic 35.0%
! AGTTACGTACAGAGTATTTG+GGG + chr1.3:56324376-56324395 None:intergenic 35.0%
! AGTTGTATTTTCGATGCAAG+AGG + chr1.3:56322152-56322171 None:intergenic 35.0%
! ATTTTATCCGTGGATATCCA+CGG + chr1.3:56321302-56321321 None:intergenic 35.0%
! CAGTTGATTCTCAGTACAAT+AGG + chr1.3:56321113-56321132 None:intergenic 35.0%
! CCACTTTCACTTCCTTTTAA+AGG + chr1.3:56321551-56321570 None:intergenic 35.0%
! CCTGCCATATTTTCAACTTT+TGG - chr1.3:56321139-56321158 MS.gene005020:intron 35.0%
! CCTTTAAAAGGAAGTGAAAG+TGG - chr1.3:56321548-56321567 MS.gene005020:intron 35.0%
! CTAATTAATGGATACGGATG+CGG - chr1.3:56321393-56321412 MS.gene005020:intron 35.0%
! CTCATAGTTATAGATGGGTT+GGG + chr1.3:56323084-56323103 None:intergenic 35.0%
! CTGTTTCAGTTTTTGCACTT+AGG - chr1.3:56322971-56322990 MS.gene005020:intron 35.0%
! GAAAGAGTGGATTTCCATAT+TGG + chr1.3:56324050-56324069 None:intergenic 35.0%
! GCCATATTTTCAACTTTTGG+TGG - chr1.3:56321142-56321161 MS.gene005020:intron 35.0%
! TACCCGCTAATTAATGGATA+CGG - chr1.3:56321387-56321406 MS.gene005020:intron 35.0%
! TTCTATGTTGTTTGGCACTT+TGG + chr1.3:56322669-56322688 None:intergenic 35.0%
!! CTTTCACTTCCTTTTAAAGG+AGG + chr1.3:56321548-56321567 None:intergenic 35.0%
!! GCCCATTAATGGCTTTATTT+CGG + chr1.3:56321042-56321061 None:intergenic 35.0%
!! TTGGGTATTTTTACCAGAAG+GGG + chr1.3:56322003-56322022 None:intergenic 35.0%
!! TTTGTGCACATATTTTGGAC+AGG - chr1.3:56324277-56324296 MS.gene005020:CDS 35.0%
!!! ATGGCTAGGGTTTTAAATTC+GGG + chr1.3:56320893-56320912 None:intergenic 35.0%
!!! GATGGCTAGGGTTTTAAATT+CGG + chr1.3:56320894-56320913 None:intergenic 35.0%
AAACTCCATAATCCAAGCCA+TGG + chr1.3:56322069-56322088 None:intergenic 40.0%
AACACATTGAGTGCTAACCT+AGG + chr1.3:56321204-56321223 None:intergenic 40.0%
AATCTCAAGCACATGAAGTC+AGG - chr1.3:56322022-56322041 MS.gene005020:intron 40.0%
ACACTGACCAATATTGGAAC+TGG - chr1.3:56320566-56320585 MS.gene005020:intron 40.0%
ACCTTCCGGTAATTCTTCAA+AGG + chr1.3:56320129-56320148 None:intergenic 40.0%
AGATCTCTTGCCATTACTTG+GGG - chr1.3:56320541-56320560 MS.gene005020:CDS 40.0%
AGGAATAGAAGTTAGGCCTA+AGG - chr1.3:56324710-56324729 MS.gene005020:CDS 40.0%
ATACAACTGACCAGCATATG+TGG + chr1.3:56322784-56322803 None:intergenic 40.0%
CAACAAGCTTAGTAAGTGAG+GGG + chr1.3:56320791-56320810 None:intergenic 40.0%
CACAAACTGACCACTAACAT+AGG + chr1.3:56321081-56321100 None:intergenic 40.0%
CATAATGCACACAGGAATCT+AGG - chr1.3:56322529-56322548 MS.gene005020:intron 40.0%
CCCAATATAAGGGTTGAAGT+TGG + chr1.3:56323829-56323848 None:intergenic 40.0%
CGGGTTTATACAGATATCCA+TGG + chr1.3:56321833-56321852 None:intergenic 40.0%
CTAGATCTCTTGCCATTACT+TGG - chr1.3:56320539-56320558 MS.gene005020:CDS 40.0%
CTGAACCTCAATAACAGTGT+TGG - chr1.3:56323385-56323404 MS.gene005020:intron 40.0%
CTGAACTTCTTCATGTGTGT+TGG - chr1.3:56324313-56324332 MS.gene005020:CDS 40.0%
CTGTCAAATGCAAGAGATGT+TGG + chr1.3:56322944-56322963 None:intergenic 40.0%
GAAGATATGAGAACCTAGTC+AGG + chr1.3:56323567-56323586 None:intergenic 40.0%
GACTTCATGTGCTTGAGATT+TGG + chr1.3:56322022-56322041 None:intergenic 40.0%
GATCACCAACACTGTTATTG+AGG + chr1.3:56323393-56323412 None:intergenic 40.0%
GCTAGCAAAAAAGGGTAGAA+AGG - chr1.3:56323188-56323207 MS.gene005020:intron 40.0%
GGGATGTAAATGGATATCCA+CGG + chr1.3:56321971-56321990 None:intergenic 40.0%
GGGGAATTCAGTACAACTTA+AGG + chr1.3:56322466-56322485 None:intergenic 40.0%
GTAGTGAGAGAAGCTGAAAA+TGG + chr1.3:56323286-56323305 None:intergenic 40.0%
GTGAAATTCCCTTAGTTGGA+AGG + chr1.3:56322872-56322891 None:intergenic 40.0%
GTGGCTATTAGGGATGTAAA+TGG + chr1.3:56321981-56322000 None:intergenic 40.0%
TAAATGGATATCCACGGATG+CGG + chr1.3:56321965-56321984 None:intergenic 40.0%
TACAACTGACCAGCATATGT+GGG + chr1.3:56322783-56322802 None:intergenic 40.0%
TAGATAAGTAAGCCATCAGC+TGG + chr1.3:56323988-56324007 None:intergenic 40.0%
TAGCAGTCCAGTTCCAATAT+TGG + chr1.3:56320576-56320595 None:intergenic 40.0%
TATGTGTGGAAATAGTCAGC+AGG + chr1.3:56320924-56320943 None:intergenic 40.0%
TCATCTTCTCCCTCACAAAA+AGG + chr1.3:56323927-56323946 None:intergenic 40.0%
TCGGGTGTACAGTAAACTTT+AGG + chr1.3:56323363-56323382 None:intergenic 40.0%
TGAAGAAGTTCAGCAACTTC+AGG + chr1.3:56324306-56324325 None:intergenic 40.0%
TGGATATCTGTATAAACCCG+CGG - chr1.3:56321833-56321852 MS.gene005020:intron 40.0%
TGGATTTGAGTACTATCCTG+TGG - chr1.3:56324425-56324444 MS.gene005020:intron 40.0%
TGGGCAACATAACTATTGTC+AGG + chr1.3:56323484-56323503 None:intergenic 40.0%
TTAAGAGCAAACCTGGATTC+AGG + chr1.3:56320601-56320620 None:intergenic 40.0%
TTGTTTGGCACTTTGGCTAA+TGG + chr1.3:56322662-56322681 None:intergenic 40.0%
TTTATCTAACGGAGTGGACA+CGG - chr1.3:56321927-56321946 MS.gene005020:intron 40.0%
! AATACCTAGGGTGCTTTCTT+AGG + chr1.3:56321504-56321523 None:intergenic 40.0%
! CTTTCAGGAGTATGAAAGAG+TGG + chr1.3:56324063-56324082 None:intergenic 40.0%
! GACAGCCTTTGAAGAATTAC+CGG - chr1.3:56320121-56320140 MS.gene005020:CDS 40.0%
! GAGATGGAACTGTGTTGATA+AGG + chr1.3:56323020-56323039 None:intergenic 40.0%
!! AGATAGAGATCCTTTTTGGC+AGG + chr1.3:56320317-56320336 None:intergenic 40.0%
!! ATCCTTTTTGGCAGGAATGT+TGG + chr1.3:56320309-56320328 None:intergenic 40.0%
!! ATTAGGAAGAGTGTTGTTCG+TGG - chr1.3:56322415-56322434 MS.gene005020:intron 40.0%
!! TGTGTTGGCTTGAAATTCGT+GGG - chr1.3:56324328-56324347 MS.gene005020:CDS 40.0%
!!! GAGCGTGAAAATTTTGGTTG+TGG + chr1.3:56320689-56320708 None:intergenic 40.0%
!!! GATTTTTTTGCCATCCCTAG+TGG + chr1.3:56321274-56321293 None:intergenic 40.0%
AAAGCGATTCCAAACAGCGT+CGG + chr1.3:56320240-56320259 None:intergenic 45.0%
AAATCCATAGCCACTAGGGA+TGG - chr1.3:56321261-56321280 MS.gene005020:intron 45.0%
ACGCTCATGAGTGGTGTATT+GGG - chr1.3:56320703-56320722 MS.gene005020:intron 45.0%
ACTTAGCTGAAGCGAAGTGA+AGG + chr1.3:56322095-56322114 None:intergenic 45.0%
AGATCCAAGCTCATATCCAG+TGG - chr1.3:56320825-56320844 MS.gene005020:intron 45.0%
AGCCAACATTCCTGCCAAAA+AGG - chr1.3:56320304-56320323 MS.gene005020:CDS 45.0%
AGCCTATGCAGAAGCTGAAT+AGG - chr1.3:56323619-56323638 MS.gene005020:intron 45.0%
AGTATTTGGGGACAAGGCAA+GGG + chr1.3:56324364-56324383 None:intergenic 45.0%
CAGCCATCGCTTCTAACATT+AGG + chr1.3:56324582-56324601 None:intergenic 45.0%
CGTCCTAATGTTAGAAGCGA+TGG - chr1.3:56324576-56324595 MS.gene005020:CDS 45.0%
CTAATGTTAGAAGCGATGGC+TGG - chr1.3:56324580-56324599 MS.gene005020:CDS 45.0%
GAATGTTGCAGTTCTCAAGC+TGG - chr1.3:56323945-56323964 MS.gene005020:intron 45.0%
GATCCAAGCTCATATCCAGT+GGG - chr1.3:56320826-56320845 MS.gene005020:intron 45.0%
GCCAAGTTAATCACTTGGCA+CGG + chr1.3:56323774-56323793 None:intergenic 45.0%
GGATACGGATGCGGATTTAA+TGG - chr1.3:56321402-56321421 MS.gene005020:intron 45.0%
GGCAGTTCTTAAATGGGAGA+TGG + chr1.3:56323036-56323055 None:intergenic 45.0%
TAGTCAGCAGGATGACTTGA+TGG + chr1.3:56320912-56320931 None:intergenic 45.0%
TCCACGGATAAAATCCGTCA+CGG - chr1.3:56321308-56321327 MS.gene005020:intron 45.0%
TTCTGCATAGGCTTTGCAAG+TGG + chr1.3:56323612-56323631 None:intergenic 45.0%
TTTAATGGTATCCACACCCG+CGG - chr1.3:56321417-56321436 MS.gene005020:intron 45.0%
! ATTCCAAACAGCGTCGGAAT+CGG + chr1.3:56320234-56320253 None:intergenic 45.0%
! GCCTTTGAAGAATTACCGGA+AGG - chr1.3:56320125-56320144 MS.gene005020:CDS 45.0%
! GGCTGGTTCAACTTTATGTG+TGG + chr1.3:56320938-56320957 None:intergenic 45.0%
! GTACAGAGTATTTGGGGACA+AGG + chr1.3:56324370-56324389 None:intergenic 45.0%
! TTTGAAAGGCACACCTGACT+AGG - chr1.3:56323551-56323570 MS.gene005020:intron 45.0%
! TTTGGCAGGAATGTTGGCTA+GGG + chr1.3:56320303-56320322 None:intergenic 45.0%
!! ACTTCCTAAGAAAGCACCCT+AGG - chr1.3:56321497-56321516 MS.gene005020:intron 45.0%
!! ATAGATGGGTTGGGAGACTT+AGG + chr1.3:56323075-56323094 None:intergenic 45.0%
!! ATAGCGGGTATGAATATCCG+CGG + chr1.3:56321437-56321456 None:intergenic 45.0%
!! GGTATTTTTACCAGAAGGGG+TGG + chr1.3:56322000-56322019 None:intergenic 45.0%
!! GTGTGTTGGCTTGAAATTCG+TGG - chr1.3:56324327-56324346 MS.gene005020:CDS 45.0%
!! TTTTGGCAGGAATGTTGGCT+AGG + chr1.3:56320304-56320323 None:intergenic 45.0%
!!! GCAGTTCTCAAGCTGGTTTT+CGG - chr1.3:56323952-56323971 MS.gene005020:intron 45.0%
!!! TTTATTTTTATTAAATGTAA+GGG - chr1.3:56321642-56321661 MS.gene005020:intron 5.0%
AAGGGTGGTCATTGGAAGAG+AGG - chr1.3:56324675-56324694 MS.gene005020:CDS 50.0%
ACCAGAAGGGGTGGCTATTA+GGG + chr1.3:56321991-56322010 None:intergenic 50.0%
AGAACTAGAGGTCTGTTGCG+CGG - chr1.3:56320973-56320992 MS.gene005020:intron 50.0%
ATATCCGCGCGGATATGGAT+AGG - chr1.3:56321890-56321909 MS.gene005020:intron 50.0%
ATGCCCACTGGATATGAGCT+TGG + chr1.3:56320832-56320851 None:intergenic 50.0%
ATTACCGGAAGGTTGCATCG+CGG - chr1.3:56320136-56320155 MS.gene005020:CDS 50.0%
CAACTTAAGGGTTACGAGCC+TGG + chr1.3:56322453-56322472 None:intergenic 50.0%
CACGCTCATGAGTGGTGTAT+TGG - chr1.3:56320702-56320721 MS.gene005020:intron 50.0%
CCACGGATAAAATCCGTCAC+GGG - chr1.3:56321309-56321328 MS.gene005020:intron 50.0%
CGAAGTTTCTGATGCCACCA+TGG - chr1.3:56322049-56322068 MS.gene005020:intron 50.0%
CGCCCTATCATCATCGACAA+TGG - chr1.3:56320350-56320369 MS.gene005020:CDS 50.0%
CGCGGATACCTCAAAATCCA+CGG - chr1.3:56321851-56321870 MS.gene005020:intron 50.0%
CTCCATAATCCAAGCCATGG+TGG + chr1.3:56322066-56322085 None:intergenic 50.0%
GAGATGGGAGAGTTCTTCTC+AGG - chr1.3:56324612-56324631 MS.gene005020:CDS 50.0%
GAGTATTTGGGGACAAGGCA+AGG + chr1.3:56324365-56324384 None:intergenic 50.0%
GCCGTGCCAAGTGATTAACT+TGG - chr1.3:56323770-56323789 MS.gene005020:intron 50.0%
GCTGAATAGGCCACATGTGT+TGG - chr1.3:56323632-56323651 MS.gene005020:intron 50.0%
GGCAAAAAAATCCGCATCCG+TGG - chr1.3:56321282-56321301 MS.gene005020:intron 50.0%
GGCCTATTCAGCTTCTGCAT+AGG + chr1.3:56323624-56323643 None:intergenic 50.0%
GGGGTGACACTGACCAATAT+TGG - chr1.3:56320560-56320579 MS.gene005020:intron 50.0%
GGTGGCATCAGAAACTTCGT+TGG + chr1.3:56322048-56322067 None:intergenic 50.0%
GTCAGTGTCACCCCAAGTAA+TGG + chr1.3:56320554-56320573 None:intergenic 50.0%
TACCAGAAGGGGTGGCTATT+AGG + chr1.3:56321992-56322011 None:intergenic 50.0%
TATCACACTATCCGCATCCG+TGG - chr1.3:56321951-56321970 MS.gene005020:intron 50.0%
TATCCGCGCGGATATGGATA+GGG - chr1.3:56321891-56321910 MS.gene005020:intron 50.0%
TGACCAGCATATGTGGGACT+GGG + chr1.3:56322777-56322796 None:intergenic 50.0%
TGCAAGTGTGCCAACACATG+TGG + chr1.3:56323645-56323664 None:intergenic 50.0%
TGTTAGAAGCGATGGCTGGT+TGG - chr1.3:56324584-56324603 MS.gene005020:CDS 50.0%
TTTCTGATGCCACCATGGCT+TGG - chr1.3:56322054-56322073 MS.gene005020:intron 50.0%
TTTGCCATCCCTAGTGGCTA+TGG + chr1.3:56321268-56321287 None:intergenic 50.0%
! AGCAGGATGACTTGATGGCT+AGG + chr1.3:56320907-56320926 None:intergenic 50.0%
! AGTTCTGGCGATGGACAGAT+CGG + chr1.3:56320959-56320978 None:intergenic 50.0%
! CGGGTAATCCGTGGATTTTG+AGG + chr1.3:56321862-56321881 None:intergenic 50.0%
! GCACACAGGAATCTAGGGTT+GGG - chr1.3:56322535-56322554 MS.gene005020:intron 50.0%
! GCAGGATGACTTGATGGCTA+GGG + chr1.3:56320906-56320925 None:intergenic 50.0%
! GGCTGGTTGGAGATTGAGAT+GGG - chr1.3:56324597-56324616 MS.gene005020:CDS 50.0%
! TAGCGGGTATGAATATCCGC+GGG + chr1.3:56321436-56321455 None:intergenic 50.0%
! TCCACGGATTACCCGCTAAA+CGG - chr1.3:56321867-56321886 MS.gene005020:intron 50.0%
! TGCACACAGGAATCTAGGGT+TGG - chr1.3:56322534-56322553 MS.gene005020:intron 50.0%
! TGCCACCATGGCTTGGATTA+TGG - chr1.3:56322061-56322080 MS.gene005020:intron 50.0%
! TGGCTGGTTGGAGATTGAGA+TGG - chr1.3:56324596-56324615 MS.gene005020:CDS 50.0%
!! AGAGTGTTGTTCGTGGTGAC+CGG - chr1.3:56322422-56322441 MS.gene005020:intron 50.0%
!!! CGTGGATTTTGAGGTATCCG+CGG + chr1.3:56321853-56321872 None:intergenic 50.0%
!!! GTGGATTTTGAGGTATCCGC+GGG + chr1.3:56321852-56321871 None:intergenic 50.0%
AACGGATATCCGCGCGGATA+TGG - chr1.3:56321885-56321904 MS.gene005020:intron 55.0%
AATCCGTCACGGGTACAGAG+CGG - chr1.3:56321319-56321338 MS.gene005020:intron 55.0%
AGTACAACTCCACTCGACGC+TGG - chr1.3:56320170-56320189 MS.gene005020:CDS 55.0%
ATCACTTGGCACGGCTGCAA+AGG + chr1.3:56323765-56323784 None:intergenic 55.0%
ATTGCCGCGATGCAACCTTC+CGG + chr1.3:56320143-56320162 None:intergenic 55.0%
CTGACCAGCATATGTGGGAC+TGG + chr1.3:56322778-56322797 None:intergenic 55.0%
CTGTCCATCGCCAGAACTAG+AGG - chr1.3:56320961-56320980 MS.gene005020:intron 55.0%
GCGCGGATATGGATAGGGTA+CGG - chr1.3:56321896-56321915 MS.gene005020:intron 55.0%
GGACTGCTATGCCTGAATCC+AGG - chr1.3:56320587-56320606 MS.gene005020:intron 55.0%
GGTATGAATATCCGCGGGTG+TGG + chr1.3:56321431-56321450 None:intergenic 55.0%
GGTCGTTGTAGTCCAGCTGA+TGG - chr1.3:56323973-56323992 MS.gene005020:intron 55.0%
GGTTACGAGCCTGGTATACC+CGG + chr1.3:56322444-56322463 None:intergenic 55.0%
GTACCCTATCCATATCCGCG+CGG + chr1.3:56321897-56321916 None:intergenic 55.0%
TATCCGCTCTGTACCCGTGA+CGG + chr1.3:56321325-56321344 None:intergenic 55.0%
TCCCTAATAGCCACCCCTTC+TGG - chr1.3:56321987-56322006 MS.gene005020:intron 55.0%
TCCGCATCCGTGGATATCCA+CGG - chr1.3:56321292-56321311 MS.gene005020:intron 55.0%
TCCGTGGATATCCACGGATG+CGG + chr1.3:56321296-56321315 None:intergenic 55.0%
TGGGACTGGGCACACAGTAT+GGG + chr1.3:56322764-56322783 None:intergenic 55.0%
! GAGTGTTGTTCGTGGTGACC+GGG - chr1.3:56322423-56322442 MS.gene005020:intron 55.0%
! GCAGGAATGTTGGCTAGGGA+AGG + chr1.3:56320299-56320318 None:intergenic 55.0%
! GCGCAACAGACCTCTAGTTC+TGG + chr1.3:56320974-56320993 None:intergenic 55.0%
! TCCGTTTAGCGGGTAATCCG+TGG + chr1.3:56321871-56321890 None:intergenic 55.0%
!! CAGACCTCTAGTTCTGGCGA+TGG + chr1.3:56320968-56320987 None:intergenic 55.0%
!!! CCCGTGACGGATTTTATCCG+TGG + chr1.3:56321312-56321331 None:intergenic 55.0%
CCGCGCGGATATCCGTTTAG+CGG + chr1.3:56321882-56321901 None:intergenic 60.0%
CCGCTAAACGGATATCCGCG+CGG - chr1.3:56321879-56321898 MS.gene005020:intron 60.0%
CGCGCGGATATCCGTTTAGC+GGG + chr1.3:56321881-56321900 None:intergenic 60.0%
CGGATCCAAACGCGAGACGT+AGG - chr1.3:56324502-56324521 MS.gene005020:CDS 60.0%
GTGCCCAGTCCCACATATGC+TGG - chr1.3:56322771-56322790 MS.gene005020:intron 60.0%
GTGGGACTGGGCACACAGTA+TGG + chr1.3:56322765-56322784 None:intergenic 60.0%
TCGTGGTGACCGGGTATACC+AGG - chr1.3:56322432-56322451 MS.gene005020:intron 60.0%
CGGTGCCTACGTCTCGCGTT+TGG + chr1.3:56324510-56324529 None:intergenic 65.0%
CTGGCGATGGACAGATCGGC+TGG + chr1.3:56320955-56320974 None:intergenic 65.0%
! CGGCCGATTCCGACGCTGTT+TGG - chr1.3:56320228-56320247 MS.gene005020:CDS 65.0%
! GAGAGTCTGCCAGCGTCGAG+TGG + chr1.3:56320182-56320201 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 56320119 56324743 56320119 ID=MS.gene005020
chr1.3 mRNA 56320119 56324743 56320119 ID=MS.gene005020.t1;Parent=MS.gene005020
chr1.3 exon 56324483 56324743 56324483 ID=MS.gene005020.t1.exon1;Parent=MS.gene005020.t1
chr1.3 CDS 56324483 56324743 56324483 ID=cds.MS.gene005020.t1;Parent=MS.gene005020.t1
chr1.3 exon 56324254 56324372 56324254 ID=MS.gene005020.t1.exon2;Parent=MS.gene005020.t1
chr1.3 CDS 56324254 56324372 56324254 ID=cds.MS.gene005020.t1;Parent=MS.gene005020.t1
chr1.3 exon 56320119 56320563 56320119 ID=MS.gene005020.t1.exon3;Parent=MS.gene005020.t1
chr1.3 CDS 56320119 56320563 56320119 ID=cds.MS.gene005020.t1;Parent=MS.gene005020.t1
Gene Sequence

>MS.gene005020

ATGACAGCCTTTGAAGAATTACCGGAAGGTTGCATCGCGGCAATTCTCTCTAGTACAACTCCACTCGACGCTGGCAGACTCTCCCTCGTTTCTAAGAATTTTCTTTCTGCGGCCGATTCCGACGCTGTTTGGAATCGCTTTCTCCCTTCTGATATCTCATCTATCATCTCACACTTTCCTTCCCTAGCCAACATTCCTGCCAAAAAGGATCTCTATCTTGCTCTATCTGATCGCCCTATCATCATCGACAATGGTAAAAAGGTATTTTTCTTCCCAACTACTGATTTCTCGAATATTATTGAATTGGTCAGTTTTGGAGTTTCAAATGTTTAGTTAAGAATGCTAATTAGCGTTGGATTTATGAAATGTAGAGTTTTCAATTGGAGAGAAAGAGTGGAAAGAAGTGTTATATGCTTTCTGCTAGATCTCTTGCCATTACTTGGGGTGACACTGACCAATATTGGAACTGGACTGCTATGCCTGAATCCAGGTTTGCTCTTAAATTTTCTACTTGCTTAACTTAACTTAATAAATTTTCTAGTTAGTATCAGAGTCTATTCATTCAGACCACAACCAAAATTTTCACGCTCATGAGTGGTGTATTGGGAAAAATGCATGTCTCATGTTGAAAAGAAATAAGGCATGAAAATAGTTTACAAAAGAGAGGAACCCCTCACTTACTAAGCTTGTTGTTTAAGAATGTGCTAGATCCAAGCTCATATCCAGTGGGCATGATTTAAAAAAAAAAAAAAAAAACTCAAGTCAGAAAGTCCCGAATTTAAAACCCTAGCCATCAAGTCATCCTGCTGACTATTTCCACACATAAAGTTGAACCAGCCGATCTGTCCATCGCCAGAACTAGAGGTCTGTTGCGCGGTCATGAACCTAAGCAATTTTAGGCTCTCTTGTTTTTTCATGTGCCGAAATAAAGCCATTAATGGGCTTGAATGATTCTATTTCCTATGTTAGTGGTCAGTTTGTGTTGATTGATCCTATTGTACTGAGAATCAACTGGCTTTTCCTGCCATATTTTCAACTTTTGGTGGTGAAAATTCCAATCAGCAGTTAGTAAAGAAGGTTTGCCTAGGTTAGCACTCAATGTGTTGCTCTACTTCTAGACCATGCCATAGATAAGTGTTTCAAAATCCATAGCCACTAGGGATGGCAAAAAAATCCGCATCCGTGGATATCCACGGATAAAATCCGTCACGGGTACAGAGCGGATATGTTAATAGATATCCATGGATAAAATAAACGGATTTTTTAACTACCCGCTAATTAATGGATACGGATGCGGATTTAATGGTATCCACACCCGCGGATATTCATACCCGCTATTAAACCGAGTAAATTACATAAATAACCTCAATATCATTCAACTTCCTAAGAAAGCACCCTAGGTATTGTGAGTGTTATCAGTTATTACCCTCCTTTAAAAGGAAGTGAAAGTGGTTGGGATTGTTGATGCTTTGTTTTTGTTGAATATGATGAGCTTTACTTATGTTTTTGTTAAATCAAAGAACTTTATTTTTATTAAATGTAAGGGACTTTATTTATGATTTTGTTGAGTCAATGATCTTTGTTGTTATTGTAATGTATGAATACTATGTTTTGCTAAAAAGAAAAGAAAATGCATGTGAAGAACCTTTGTTTCTAAATTTTAGCTAATAAAAAGTAAACAAATTTTTTATTTTATTTTTATAAATGTTATCCATGGATATCTGTATAAACCCGCGGATACCTCAAAATCCACGGATTACCCGCTAAACGGATATCCGCGCGGATATGGATAGGGTACGGATTTCATATTTATCTAACGGAGTGGACACGGATATCACACTATCCGCATCCGTGGATATCCATTTACATCCCTAATAGCCACCCCTTCTGGTAAAAATACCCAAATCTCAAGCACATGAAGTCAGGCCAACGAAGTTTCTGATGCCACCATGGCTTGGATTATGGAGTTTATTCCTTCACTTCGCTTCAGCTAAGTTTCTGAAGCAAACATTCATCTATTCACTCATTTACCTCTTGCATCGAAAATACAACTTGGAATGGAGCACCTAGATCTTTTATCATGTAGTCCTTCATCTGTACAGTTTCTTTTCTTGATCCAAATCATTAGATTTTGGATTCAACGACAGCCAATCCTATTTTTTTTCAATGCTTAATTAAATTTGCATGACTTTTTTCTTTACTTTTCAGTTCCTTCAATCAAGTTCAAACTGATTTCTTCGAATTTCATTGCTATAAACTTATACCTATTCCATTATTTTTACTATGGGGTCTTTAGATTAGGAAGAGTGTTGTTCGTGGTGACCGGGTATACCAGGCTCGTAACCCTTAAGTTGTACTGAATTCCCCATTTTGTGATGATGTTTCTGTAATTAAGTTTCAAATAAAGTATCATAATGCACACAGGAATCTAGGGTTGGGCATTTGTCTTCAAAACGTTATTGATTCTTAAAAAAAAAAAGTAACAGTATAACACCAACTTTCTTTTTTCTGATTTTAATTGTGGTCCTAATTATATATGTCCATTAGCCAAAGTGCCAAACAACATAGAATTTCATTTTATTTAAATACTAAGTTACTTGCTCTTTCTTTTAATAATATATCATAAATTGTGATGTTTGGGGCCCATACTGTGTGCCCAGTCCCACATATGCTGGTCAGTTGTATGTCTTCTCATTCTGACTTTGAGATGTTGCAATGCCAATATCTCTTGAATCGGCTTTAACTGATTTCCTTCCAACTAAGGGAATTTCACATCAATTTTCAAGCGTAAGACTACAATACAAGCATGTTGAGAATAGACACCAACATCTCTTGCATTTGACAGATCTTTGCTGTTTCAGTTTTTGCACTTAGGTACCAGTTTTGTTTTTCTACTCTCCTTATCAACACAGTTCCATCTCCCATTTAAGAACTGCCAAATTAGCTTCTGTATCCTAAGTCTCCCAACCCATCTATAACTATGAGTTTTTTAGCTTCTTATGTTGTGCCTATGCTTTTTCATAATTGTTAGATACGTTCTCGGAAAGCGACATTCCTGCATTATTATTGGCTAGCAAAAAAGGGTAGAAAGGCTGTGTATTGAATGCTATAAGTGAAAGACCATTTTAAATTTCAAGGGATGTAAAGTTGAATGAAACTATTTTCCATTTTCAGCTTCTCTCACTACTTTCACTTTCTCCTCATATTTCCTTCTAAGTGAATACTTGTTAAATTATTCAATCCTAAAGTTTACTGTACACCCGAATCTGAACCTCAATAACAGTGTTGGTGATCTACTGTCTCATAATTCTCTATATAGATAGTTAATAAGTAGAATACTATTATACTTGATAAATTCTAGACCTGACAATAGTTATGTTGCCCAAAAAATAAGTCTGTATGTATATGAGCATTGCAGTCCCCTTTTTGATATTTGAAAGGCACACCTGACTAGGTTCTCATATCTTCTGAAACTTCTTTCTTACATTAACCACTTGCAAAGCCTATGCAGAAGCTGAATAGGCCACATGTGTTGGCACACTTGCAGATCCGCTACATGTTACCATTTTTTCTTTGTGATTTTACTTTGTCATGGAAACCAATAAATCTACTGTCAGTGGATCATTTGTGAAGACTGAGTATACCTTTGCAGCCGTGCCAAGTGATTAACTTGGCTATCATATCTTGTTTATAATTTTGTCTTTTCTCCAACTTCAACCCTTATATTGGGACAACCAAGTAGTTGTCTATATTGCTTCTATCCACAATTATCATGAGGCAATGAGGAATGTAGAAAACTGGATTTCCTTTTTGTGAGGGAGAAGATGAATGTTGCAGTTCTCAAGCTGGTTTTCGGTCGTTGTAGTCCAGCTGATGGCTTACTTATCTACAAATGCTCTTTCTACAACTCACTTTCGTGAAATTTTGTCCAATATGGAAATCCACTCTTTCATACTCCTGAAAGTCCCAATAGTTTTAGATATTTTAGACAAGATCCACCACTGGATAGTGGGCAGGGTATTATTTACAACAACCAATATAACTTAGAAGTTTATCATAATCAGTTACAGCTTTAAACAATTTAGTCATACTTGGTTTACAGTTTCCAAATTTTAGTTGATGAGCCTACATTGTTCCTGTATTCTTATCTTTGCAACTTTTGTGCACATATTTTGGACAGGTTTCCTGAAGTTGCTGAACTTCTTCATGTGTGTTGGCTTGAAATTCGTGGGAAGATAAACACCCTTGCCTTGTCCCCAAATACTCTGTACGTAACTTATCTTGTGTTCAAGATGATCAATGCCTATGGATTTGAGTACTATCCTGTGGAGTTATCAGTTGATATCAAAGGTGGCCAAAGTAGCACTAAAATTGTCTGTTTAGCGGATCCAAACGCGAGACGTAGGCACCGTAGCAGAATTATAGTTACGGAGCCCAACAGAGTATTAAGATTGCAACGTCCTAATGTTAGAAGCGATGGCTGGTTGGAGATTGAGATGGGAGAGTTCTTCTCAGGCCTAGAAGATGAAGAAGTCCAAATGAGTGTTATTGATATAAAGGGTGGTCATTGGAAGAGAGGTTTCTTTGTTGAAGGAATAGAAGTTAGGCCTAAGGAAGACCATTAA
Protein sequence

>MS.gene005020.t1

MTAFEELPEGCIAAILSSTTPLDAGRLSLVSKNFLSAADSDAVWNRFLPSDISSIISHFPSLANIPAKKDLYLALSDRPIIIDNGKKSFQLERKSGKKCYMLSARSLAITWGDTDQYWNWTAMPESRFPEVAELLHVCWLEIRGKINTLALSPNTLYVTYLVFKMINAYGFEYYPVELSVDIKGGQSSTKIVCLADPNARRRHRSRIIVTEPNRVLRLQRPNVRSDGWLEIEMGEFFSGLEDEEVQMSVIDIKGGHWKRGFFVEGIEVRPKEDH