Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94933.t1 | XP_013459742.1 | 75.8 | 273 | 60 | 2 | 1 | 273 | 1 | 267 | 6.90E-109 | 403.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94933.t1 | Q9ZVQ8 | 36.6 | 279 | 162 | 9 | 3 | 272 | 29 | 301 | 9.3e-38 | 158.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94933.t1 | A0A072UXI4 | 75.8 | 273 | 60 | 2 | 1 | 273 | 1 | 267 | 5.0e-109 | 403.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94933.t1 | MTR_3g452600 | 75.824 | 273 | 60 | 2 | 1 | 273 | 1 | 267 | 4.36e-148 | 415 |
| MS.gene94933.t1 | MTR_3g450990 | 67.474 | 289 | 72 | 4 | 1 | 273 | 1 | 283 | 8.58e-131 | 372 |
| MS.gene94933.t1 | MTR_2g079100 | 65.441 | 272 | 76 | 5 | 4 | 270 | 3 | 261 | 5.47e-119 | 342 |
| MS.gene94933.t1 | MTR_1g079460 | 62.879 | 264 | 97 | 1 | 10 | 273 | 4 | 266 | 9.54e-114 | 328 |
| MS.gene94933.t1 | MTR_3g006850 | 55.663 | 309 | 97 | 6 | 3 | 273 | 9 | 315 | 1.17e-110 | 322 |
| MS.gene94933.t1 | MTR_1g079180 | 60.150 | 266 | 100 | 5 | 10 | 273 | 4 | 265 | 3.84e-108 | 314 |
| MS.gene94933.t1 | MTR_1g079370 | 59.925 | 267 | 99 | 5 | 10 | 273 | 4 | 265 | 4.41e-105 | 306 |
| MS.gene94933.t1 | MTR_1g100597 | 57.194 | 278 | 102 | 5 | 7 | 273 | 1 | 272 | 3.51e-104 | 304 |
| MS.gene94933.t1 | MTR_1g079230 | 57.455 | 275 | 101 | 6 | 10 | 273 | 4 | 273 | 3.50e-101 | 296 |
| MS.gene94933.t1 | MTR_1g079260 | 57.401 | 277 | 103 | 6 | 7 | 273 | 1 | 272 | 1.84e-100 | 295 |
| MS.gene94933.t1 | MTR_1g079200 | 57.143 | 266 | 107 | 3 | 10 | 273 | 4 | 264 | 1.27e-99 | 292 |
| MS.gene94933.t1 | MTR_1g079380 | 59.176 | 267 | 101 | 5 | 10 | 273 | 4 | 265 | 1.61e-97 | 288 |
| MS.gene94933.t1 | MTR_1g079850 | 54.286 | 280 | 112 | 3 | 9 | 273 | 3 | 281 | 1.78e-94 | 280 |
| MS.gene94933.t1 | MTR_1g079250 | 54.643 | 280 | 112 | 6 | 7 | 273 | 1 | 278 | 8.88e-92 | 273 |
| MS.gene94933.t1 | MTR_1g026510 | 51.930 | 285 | 117 | 7 | 7 | 273 | 1 | 283 | 7.85e-91 | 271 |
| MS.gene94933.t1 | MTR_1g100613 | 56.967 | 244 | 88 | 3 | 26 | 256 | 5 | 244 | 5.26e-87 | 259 |
| MS.gene94933.t1 | MTR_1g079350 | 51.273 | 275 | 126 | 5 | 7 | 273 | 1 | 275 | 6.16e-83 | 250 |
| MS.gene94933.t1 | MTR_7g096300 | 56.349 | 252 | 99 | 4 | 10 | 258 | 4 | 247 | 8.32e-80 | 255 |
| MS.gene94933.t1 | MTR_1g079410 | 47.778 | 270 | 129 | 6 | 11 | 273 | 9 | 273 | 1.18e-71 | 221 |
| MS.gene94933.t1 | MTR_1g079340 | 45.205 | 292 | 141 | 4 | 1 | 273 | 34 | 325 | 9.59e-70 | 218 |
| MS.gene94933.t1 | MTR_3g058640 | 88.679 | 106 | 11 | 1 | 133 | 237 | 1 | 106 | 3.16e-62 | 191 |
| MS.gene94933.t1 | MTR_1g079140 | 40.268 | 298 | 140 | 7 | 10 | 273 | 13 | 306 | 2.10e-58 | 189 |
| MS.gene94933.t1 | MTR_1g079400 | 39.860 | 286 | 130 | 6 | 11 | 273 | 13 | 279 | 4.23e-55 | 179 |
| MS.gene94933.t1 | MTR_1g078470 | 54.913 | 173 | 73 | 5 | 101 | 273 | 17 | 184 | 2.38e-53 | 171 |
| MS.gene94933.t1 | MTR_1g076870 | 62.222 | 135 | 33 | 1 | 138 | 254 | 2 | 136 | 3.61e-52 | 167 |
| MS.gene94933.t1 | MTR_1g079350 | 47.872 | 188 | 91 | 4 | 7 | 189 | 1 | 186 | 7.83e-47 | 156 |
| MS.gene94933.t1 | MTR_1g079240 | 50.000 | 178 | 79 | 4 | 96 | 273 | 12 | 179 | 2.02e-45 | 151 |
| MS.gene94933.t1 | MTR_7g112550 | 37.050 | 278 | 154 | 8 | 13 | 273 | 10 | 283 | 1.12e-44 | 152 |
| MS.gene94933.t1 | MTR_7g112560 | 37.358 | 265 | 157 | 6 | 10 | 273 | 1 | 257 | 1.19e-44 | 152 |
| MS.gene94933.t1 | MTR_1g083580 | 34.783 | 276 | 164 | 6 | 11 | 273 | 9 | 281 | 5.55e-44 | 150 |
| MS.gene94933.t1 | MTR_4g023570 | 35.985 | 264 | 142 | 7 | 10 | 273 | 1 | 237 | 2.56e-40 | 140 |
| MS.gene94933.t1 | MTR_2g042540 | 59.048 | 105 | 40 | 2 | 9 | 112 | 3 | 105 | 2.51e-35 | 124 |
| MS.gene94933.t1 | MTR_1g078460 | 60.870 | 92 | 33 | 1 | 5 | 96 | 62 | 150 | 2.60e-31 | 114 |
| MS.gene94933.t1 | MTR_1g079210 | 49.593 | 123 | 48 | 1 | 139 | 247 | 7 | 129 | 2.32e-29 | 108 |
| MS.gene94933.t1 | MTR_7g096310 | 45.806 | 155 | 72 | 4 | 44 | 196 | 19 | 163 | 5.80e-28 | 105 |
| MS.gene94933.t1 | MTR_7g103380 | 24.460 | 278 | 178 | 9 | 12 | 272 | 21 | 283 | 2.89e-18 | 82.8 |
| MS.gene94933.t1 | MTR_1g079220 | 53.030 | 66 | 31 | 0 | 175 | 240 | 1 | 66 | 6.34e-16 | 71.2 |
| MS.gene94933.t1 | MTR_0113s0040 | 26.471 | 204 | 133 | 5 | 9 | 199 | 21 | 220 | 9.01e-15 | 72.8 |
| MS.gene94933.t1 | MTR_1g079390 | 62.500 | 56 | 19 | 2 | 213 | 268 | 2 | 55 | 3.73e-14 | 65.9 |
| MS.gene94933.t1 | MTR_1g101390 | 24.727 | 275 | 170 | 8 | 12 | 272 | 30 | 281 | 5.74e-14 | 70.9 |
| MS.gene94933.t1 | MTR_0002s0020 | 24.883 | 213 | 136 | 7 | 12 | 205 | 24 | 231 | 2.09e-13 | 68.9 |
| MS.gene94933.t1 | MTR_4g102770 | 30.556 | 144 | 96 | 3 | 12 | 154 | 21 | 161 | 1.60e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94933.t1 | AT1G80110 | 38.077 | 260 | 153 | 3 | 13 | 272 | 4 | 255 | 3.29e-48 | 161 |
| MS.gene94933.t1 | AT2G02360 | 34.767 | 279 | 164 | 7 | 1 | 272 | 1 | 268 | 6.92e-45 | 152 |
| MS.gene94933.t1 | AT2G02250 | 36.604 | 265 | 158 | 6 | 10 | 272 | 47 | 303 | 1.54e-44 | 153 |
| MS.gene94933.t1 | AT2G02340 | 37.011 | 281 | 158 | 10 | 3 | 272 | 29 | 301 | 1.42e-43 | 150 |
| MS.gene94933.t1 | AT2G02240 | 36.604 | 265 | 157 | 7 | 10 | 272 | 61 | 316 | 4.82e-43 | 149 |
| MS.gene94933.t1 | AT1G09155 | 36.525 | 282 | 154 | 9 | 13 | 273 | 3 | 280 | 6.72e-42 | 145 |
| MS.gene94933.t1 | AT2G02310 | 34.457 | 267 | 165 | 5 | 10 | 273 | 45 | 304 | 5.82e-39 | 138 |
| MS.gene94933.t1 | AT1G56240 | 35.461 | 282 | 155 | 9 | 13 | 272 | 4 | 280 | 1.24e-38 | 137 |
| MS.gene94933.t1 | AT1G56250 | 35.689 | 283 | 155 | 9 | 13 | 273 | 4 | 281 | 1.57e-38 | 136 |
| MS.gene94933.t1 | AT2G02230 | 30.892 | 314 | 163 | 10 | 6 | 273 | 28 | 333 | 8.63e-36 | 130 |
| MS.gene94933.t1 | AT2G02350 | 31.835 | 267 | 170 | 7 | 10 | 272 | 24 | 282 | 3.73e-35 | 128 |
| MS.gene94933.t1 | AT2G02320 | 32.959 | 267 | 163 | 7 | 12 | 272 | 42 | 298 | 8.58e-35 | 127 |
| MS.gene94933.t1 | AT2G02300 | 32.721 | 272 | 153 | 8 | 9 | 273 | 33 | 281 | 6.26e-32 | 119 |
| MS.gene94933.t1 | AT5G24560 | 33.333 | 198 | 111 | 7 | 10 | 202 | 3 | 184 | 2.82e-25 | 99.8 |
| MS.gene94933.t1 | AT3G53000 | 26.259 | 278 | 172 | 9 | 12 | 272 | 23 | 284 | 3.60e-19 | 85.5 |
| MS.gene94933.t1 | AT3G61060 | 28.472 | 144 | 98 | 4 | 12 | 154 | 27 | 166 | 6.37e-13 | 67.8 |
| MS.gene94933.t1 | AT1G12710 | 26.638 | 229 | 148 | 7 | 12 | 226 | 30 | 252 | 2.37e-12 | 66.2 |
| MS.gene94933.t1 | AT3G61060 | 28.276 | 145 | 98 | 5 | 12 | 154 | 27 | 167 | 1.35e-11 | 63.9 |
Find 61 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCCGCATACTGAGTATT+TGG | 0.215477 | 3.1:+44323811 | None:intergenic |
| CACTTCCAATACTCAATTCA+TGG | 0.291611 | 3.1:-44325501 | MS.gene94933:CDS |
| CATCGTCAACGATGGTAAAA+AGG | 0.292310 | 3.1:-44325396 | MS.gene94933:intron |
| TTACCATCGTTGACGATGAT+AGG | 0.311174 | 3.1:+44325401 | None:intergenic |
| AAGCATTATATCCGTTTGTT+TGG | 0.312045 | 3.1:-44323707 | MS.gene94933:CDS |
| AGACAAAGCTTAGCAACTTC+AGG | 0.318899 | 3.1:+44323883 | None:intergenic |
| TTCATTATATGCATGATTCT+AGG | 0.323670 | 3.1:-44324744 | MS.gene94933:intron |
| TTATTGAAGGAATAGAAATT+AGG | 0.325902 | 3.1:-44323507 | MS.gene94933:CDS |
| TACGGATTATGTTTCATGTT+TGG | 0.328678 | 3.1:+44323682 | None:intergenic |
| AAACGGATATAATGCTTCTA+TGG | 0.342861 | 3.1:+44323713 | None:intergenic |
| CCAGACAGTGTCGGAATTAG+AGG | 0.354176 | 3.1:+44325535 | None:intergenic |
| AAGCCGCATACTGAGTATTT+GGG | 0.368940 | 3.1:+44323812 | None:intergenic |
| CCTCTAATTCCGACACTGTC+TGG | 0.374563 | 3.1:-44325535 | MS.gene94933:CDS |
| TGACTCCGGTTGACGTTGTC+AGG | 0.383583 | 3.1:-44325589 | MS.gene94933:CDS |
| AGAGGAGTGGTTCGTGGTTG+AGG | 0.402814 | 3.1:-44323540 | MS.gene94933:CDS |
| GATGATAGGGCGATCAGATA+TGG | 0.411409 | 3.1:+44325415 | None:intergenic |
| AATTCTTCTTCTTTGTTGTA+CGG | 0.423726 | 3.1:+44323664 | None:intergenic |
| AGGGGAGATTTGTTTATTGA+AGG | 0.428143 | 3.1:-44323520 | MS.gene94933:CDS |
| TACGGACTTCTTCATCTTTG+AGG | 0.429778 | 3.1:+44323575 | None:intergenic |
| GAGGAGTGGTTCGTGGTTGA+GGG | 0.431657 | 3.1:-44323539 | MS.gene94933:CDS |
| CAGATAGGAAAGTCTTAGAT+AGG | 0.437798 | 3.1:+44325558 | None:intergenic |
| ATAATGAATCCACTCTTTCT+CGG | 0.443331 | 3.1:+44324759 | None:intergenic |
| ATTGTGGCGATGCAACCTTC+CGG | 0.457722 | 3.1:+44325623 | None:intergenic |
| TTGTTCTCGCATGAAATTCG+TGG | 0.468595 | 3.1:-44323859 | MS.gene94933:CDS |
| ATTGCTTAATTGTCTTACTT+AGG | 0.474152 | 3.1:+44323484 | None:intergenic |
| GAGAGCCTGACAACGTCAAC+CGG | 0.476682 | 3.1:+44325584 | None:intergenic |
| TCAACCACGAACCACTCCTC+TGG | 0.485635 | 3.1:+44323542 | None:intergenic |
| CGTCCTAGTGTGAGAAGCGA+TGG | 0.489108 | 3.1:-44323637 | MS.gene94933:CDS |
| GACAAAGCTTAGCAACTTCA+GGG | 0.499756 | 3.1:+44323884 | None:intergenic |
| TACCATCGTTGACGATGATA+GGG | 0.510282 | 3.1:+44325402 | None:intergenic |
| TGGGTGGTTGGAGATTGTGA+TGG | 0.510778 | 3.1:-44323617 | MS.gene94933:CDS |
| CATGTTTGGATCCAAACAAA+CGG | 0.516113 | 3.1:+44323696 | None:intergenic |
| TGTCGGAATTAGAGGCAGAT+AGG | 0.523490 | 3.1:+44325543 | None:intergenic |
| TGTTCTCGCATGAAATTCGT+GGG | 0.525486 | 3.1:-44323858 | MS.gene94933:CDS |
| GTAGGACTGTTTGCAATGGA+AGG | 0.526711 | 3.1:+44325458 | None:intergenic |
| ACAATCAATAGTGAGAGATC+TGG | 0.536402 | 3.1:+44324795 | None:intergenic |
| AGAGTCCATGAATTGAGTAT+TGG | 0.538122 | 3.1:+44325496 | None:intergenic |
| CACCCATCGCTTCTCACACT+AGG | 0.543006 | 3.1:+44323634 | None:intergenic |
| TGAGAGATCTGGCAGCAAGC+AGG | 0.545139 | 3.1:+44324806 | None:intergenic |
| GGGTGGTTGGAGATTGTGAT+GGG | 0.565105 | 3.1:-44323616 | MS.gene94933:CDS |
| TTTAAGATAATTTATGCCCG+TGG | 0.565342 | 3.1:-44323781 | MS.gene94933:CDS |
| TCCTCTGGATAACACACATA+CGG | 0.566781 | 3.1:+44323557 | None:intergenic |
| ATGTGAAGGCCGAGAAAGAG+TGG | 0.568335 | 3.1:-44324768 | MS.gene94933:CDS |
| CGCCCTATCATCGTCAACGA+TGG | 0.574037 | 3.1:-44325404 | MS.gene94933:CDS |
| TGTGAGAAGCGATGGGTGGT+TGG | 0.576323 | 3.1:-44323629 | MS.gene94933:CDS |
| TTATCCAGAGGAGTGGTTCG+TGG | 0.586146 | 3.1:-44323546 | MS.gene94933:CDS |
| AGGTTCGTTCACATATCCAC+GGG | 0.599651 | 3.1:+44323765 | None:intergenic |
| TTTAGTAGGACTGTTTGCAA+TGG | 0.611519 | 3.1:+44325454 | None:intergenic |
| TATTGATTGTCGTAATGTGA+AGG | 0.614326 | 3.1:-44324782 | MS.gene94933:CDS |
| CAGGTTCGTTCACATATCCA+CGG | 0.617363 | 3.1:+44323764 | None:intergenic |
| AGGAGTGGTTCGTGGTTGAG+GGG | 0.622243 | 3.1:-44323538 | MS.gene94933:CDS |
| AGCCGCATACTGAGTATTTG+GGG | 0.630234 | 3.1:+44323813 | None:intergenic |
| AATACTCTCTCGTATGACTC+CGG | 0.632315 | 3.1:-44325603 | MS.gene94933:CDS |
| TCCGTATGTGTGTTATCCAG+AGG | 0.633374 | 3.1:-44323558 | MS.gene94933:CDS |
| GTCCTAGTGTGAGAAGCGAT+GGG | 0.641166 | 3.1:-44323636 | MS.gene94933:CDS |
| ATGTGTGTTATCCAGAGGAG+TGG | 0.642237 | 3.1:-44323553 | MS.gene94933:CDS |
| GTCCCCAAATACTCAGTATG+CGG | 0.642695 | 3.1:-44323815 | MS.gene94933:CDS |
| AAAACTATTCCAGACAGTGT+CGG | 0.650825 | 3.1:+44325526 | None:intergenic |
| ACACCAACAGAAAAGCTCAC+AGG | 0.661014 | 3.1:+44323745 | None:intergenic |
| CTAGTGTGAGAAGCGATGGG+TGG | 0.709944 | 3.1:-44323633 | MS.gene94933:CDS |
| AGTCATACGAGAGAGTATTG+TGG | 0.723681 | 3.1:+44325607 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATAGTTAACTTAAATT+TGG | + | chr3.1:44324972-44324991 | None:intergenic | 15.0% |
| !! | ACAAAAATACTAAAATTAAG+TGG | - | chr3.1:44324241-44324260 | MS.gene94933:intron | 15.0% |
| !! | AGTATAGTTAACTTAAATTT+GGG | + | chr3.1:44324971-44324990 | None:intergenic | 15.0% |
| !! | TTCATTTCAAAGAAAAAATA+AGG | + | chr3.1:44324928-44324947 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTGTTTTTGAAA+AGG | + | chr3.1:44324222-44324241 | None:intergenic | 15.0% |
| !! | ATACAGTTTCTATTAACATA+TGG | + | chr3.1:44324282-44324301 | None:intergenic | 20.0% |
| !! | ATGACAATTTCTTGAATATT+AGG | - | chr3.1:44323802-44323821 | MS.gene94933:CDS | 20.0% |
| !! | TAAAACAACTATCTAAAAAC+TGG | + | chr3.1:44323900-44323919 | None:intergenic | 20.0% |
| !! | TTATTGAAGGAATAGAAATT+AGG | - | chr3.1:44325653-44325672 | MS.gene94933:CDS | 20.0% |
| !!! | AATTTTCAAACTTTACTTAC+TGG | - | chr3.1:44325122-44325141 | MS.gene94933:intron | 20.0% |
| !!! | ATGATAATTCTTTTTGTTGA+CGG | - | chr3.1:44325034-44325053 | MS.gene94933:intron | 20.0% |
| !!! | CTTTTTGAACAATTTTTTAC+AGG | - | chr3.1:44325251-44325270 | MS.gene94933:intron | 20.0% |
| ! | AAATTTAGAGAAGCTGAAAA+TGG | + | chr3.1:44324903-44324922 | None:intergenic | 25.0% |
| ! | AGTTGCAAAGATAAGAATAT+AGG | + | chr3.1:44325233-44325252 | None:intergenic | 25.0% |
| ! | GACGATTATACAAAAGAAAA+AGG | + | chr3.1:44324173-44324192 | None:intergenic | 25.0% |
| ! | GTATAAATACTCAATATGTG+AGG | - | chr3.1:44325176-44325195 | MS.gene94933:intron | 25.0% |
| ! | TAAACAGTACAATCAAAACA+CGG | - | chr3.1:44324196-44324215 | MS.gene94933:intron | 25.0% |
| ! | TAAGTTAATCAAGACACATT+GGG | + | chr3.1:44324513-44324532 | None:intergenic | 25.0% |
| ! | TACTAAAAAAGCTCTCTATA+TGG | - | chr3.1:44323722-44323741 | MS.gene94933:CDS | 25.0% |
| ! | TTAAGTTAATCAAGACACAT+TGG | + | chr3.1:44324514-44324533 | None:intergenic | 25.0% |
| ! | TTATACAAGTGTTTATACAC+TGG | + | chr3.1:44325162-44325181 | None:intergenic | 25.0% |
| ! | TTCATTATATGCATGATTCT+AGG | - | chr3.1:44324416-44324435 | MS.gene94933:intron | 25.0% |
| ! | TTTAAGAATGTAGTTCGATT+TGG | - | chr3.1:44325094-44325113 | MS.gene94933:intron | 25.0% |
| ! | TTTCAATTTCGTAGAAAAAG+TGG | - | chr3.1:44324319-44324338 | MS.gene94933:intron | 25.0% |
| !! | AATTCTTCTTCTTTGTTGTA+CGG | + | chr3.1:44325499-44325518 | None:intergenic | 25.0% |
| !! | CAAAAGAATAAAAGCTTTTG+AGG | - | chr3.1:44323509-44323528 | MS.gene94933:CDS | 25.0% |
| !!! | ATATAGAGAGCTTTTTTAGT+AGG | + | chr3.1:44323723-44323742 | None:intergenic | 25.0% |
| !!! | ATCACACTCAACATTTTTTA+TGG | - | chr3.1:44324590-44324609 | MS.gene94933:intron | 25.0% |
| !!! | TCACACTCAACATTTTTTAT+GGG | - | chr3.1:44324591-44324610 | MS.gene94933:intron | 25.0% |
| !!! | TCTTTGAAATGAATACTTGT+TGG | - | chr3.1:44324935-44324954 | MS.gene94933:intron | 25.0% |
| AAACGGATATAATGCTTCTA+TGG | + | chr3.1:44325450-44325469 | None:intergenic | 30.0% | |
| AAGCATTATATCCGTTTGTT+TGG | - | chr3.1:44325453-44325472 | MS.gene94933:CDS | 30.0% | |
| AATACTCAATATGTGAGGAT+CGG | - | chr3.1:44325181-44325200 | MS.gene94933:intron | 30.0% | |
| ATAATGAATCCACTCTTTCT+CGG | + | chr3.1:44324404-44324423 | None:intergenic | 30.0% | |
| GTCTAATGAGTAGAATTTAC+TGG | - | chr3.1:44324450-44324469 | MS.gene94933:intron | 30.0% | |
| TTATCAGTTACTACTGTTCA+GGG | - | chr3.1:44323830-44323849 | MS.gene94933:CDS | 30.0% | |
| TTGTTTATAGTTGAGACAAG+TGG | + | chr3.1:44324757-44324776 | None:intergenic | 30.0% | |
| TTTGAATTGAGGGATTAAGA+AGG | + | chr3.1:44324080-44324099 | None:intergenic | 30.0% | |
| ! | GGAGAATATTTTCACTCATA+CGG | + | chr3.1:44324882-44324901 | None:intergenic | 30.0% |
| ! | TACGGATTATGTTTCATGTT+TGG | + | chr3.1:44325481-44325500 | None:intergenic | 30.0% |
| ! | TACTGGTTAATGTGAATAAG+TGG | - | chr3.1:44324467-44324486 | MS.gene94933:intron | 30.0% |
| ! | TATTGATTGTCGTAATGTGA+AGG | - | chr3.1:44324378-44324397 | MS.gene94933:intron | 30.0% |
| ! | TATTTCCTGCATCTTTTGAT+TGG | - | chr3.1:44324626-44324645 | MS.gene94933:intron | 30.0% |
| ! | TGTTTATACACTGGTAATGT+AGG | + | chr3.1:44325153-44325172 | None:intergenic | 30.0% |
| ! | TTTAAGATAATTTATGCCCG+TGG | - | chr3.1:44325379-44325398 | MS.gene94933:intron | 30.0% |
| !! | TCTAATTTTGAGAGAAGCTA+TGG | + | chr3.1:44324725-44324744 | None:intergenic | 30.0% |
| AAAACTATTCCAGACAGTGT+CGG | + | chr3.1:44323637-44323656 | None:intergenic | 35.0% | |
| AATTGAGGGATTAAGAAGGA+AGG | + | chr3.1:44324076-44324095 | None:intergenic | 35.0% | |
| ACAATCAATAGTGAGAGATC+TGG | + | chr3.1:44324368-44324387 | None:intergenic | 35.0% | |
| AGAGTCCATGAATTGAGTAT+TGG | + | chr3.1:44323667-44323686 | None:intergenic | 35.0% | |
| CACTTCCAATACTCAATTCA+TGG | - | chr3.1:44323659-44323678 | MS.gene94933:CDS | 35.0% | |
| CAGATAGGAAAGTCTTAGAT+AGG | + | chr3.1:44323605-44323624 | None:intergenic | 35.0% | |
| CATGTTTGGATCCAAACAAA+CGG | + | chr3.1:44325467-44325486 | None:intergenic | 35.0% | |
| GTTATCAGTTACTACTGTTC+AGG | - | chr3.1:44323829-44323848 | MS.gene94933:CDS | 35.0% | |
| TCAAACCTCAATATCAGTGA+TGG | - | chr3.1:44324997-44325016 | MS.gene94933:intron | 35.0% | |
| TTACTTGTAGTTGAGACCAA+GGG | - | chr3.1:44324848-44324867 | MS.gene94933:intron | 35.0% | |
| TTTACTTGTAGTTGAGACCA+AGG | - | chr3.1:44324847-44324866 | MS.gene94933:CDS | 35.0% | |
| TTTAGTAGGACTGTTTGCAA+TGG | + | chr3.1:44323709-44323728 | None:intergenic | 35.0% | |
| ! | AGGGGAGATTTGTTTATTGA+AGG | - | chr3.1:44325640-44325659 | MS.gene94933:CDS | 35.0% |
| !! | AAAAGCTTTTGAGGAATTGC+CGG | - | chr3.1:44323518-44323537 | MS.gene94933:CDS | 35.0% |
| AACCTCAATATCAGTGATGG+TGG | - | chr3.1:44325000-44325019 | MS.gene94933:intron | 40.0% | |
| AAGCCGCATACTGAGTATTT+GGG | + | chr3.1:44325351-44325370 | None:intergenic | 40.0% | |
| AATACTCTCTCGTATGACTC+CGG | - | chr3.1:44323557-44323576 | MS.gene94933:CDS | 40.0% | |
| ACCGGAAAATTTCCTTAAGG+AGG | + | chr3.1:44324661-44324680 | None:intergenic | 40.0% | |
| AGACAAAGCTTAGCAACTTC+AGG | + | chr3.1:44325280-44325299 | None:intergenic | 40.0% | |
| CAAGACCAATCAAAAGATGC+AGG | + | chr3.1:44324634-44324653 | None:intergenic | 40.0% | |
| CATCGTCAACGATGGTAAAA+AGG | - | chr3.1:44323764-44323783 | MS.gene94933:CDS | 40.0% | |
| CCGGAAAATTTCCTTAAGGA+GGG | + | chr3.1:44324660-44324679 | None:intergenic | 40.0% | |
| CCTCAATTCAAACACACCTT+CGG | - | chr3.1:44324088-44324107 | MS.gene94933:intron | 40.0% | |
| CGGAAAATTTCCTTAAGGAG+GGG | + | chr3.1:44324659-44324678 | None:intergenic | 40.0% | |
| GACAAAGCTTAGCAACTTCA+GGG | + | chr3.1:44325279-44325298 | None:intergenic | 40.0% | |
| GCAACCGGAAAATTTCCTTA+AGG | + | chr3.1:44324664-44324683 | None:intergenic | 40.0% | |
| TAAGCCGCATACTGAGTATT+TGG | + | chr3.1:44325352-44325371 | None:intergenic | 40.0% | |
| TACCATCGTTGACGATGATA+GGG | + | chr3.1:44323761-44323780 | None:intergenic | 40.0% | |
| TACGGACTTCTTCATCTTTG+AGG | + | chr3.1:44325588-44325607 | None:intergenic | 40.0% | |
| TCCTCTGGATAACACACATA+CGG | + | chr3.1:44325606-44325625 | None:intergenic | 40.0% | |
| TGTTCTCGCATGAAATTCGT+GGG | - | chr3.1:44325302-44325321 | MS.gene94933:intron | 40.0% | |
| TTACCATCGTTGACGATGAT+AGG | + | chr3.1:44323762-44323781 | None:intergenic | 40.0% | |
| TTGTTCTCGCATGAAATTCG+TGG | - | chr3.1:44325301-44325320 | MS.gene94933:intron | 40.0% | |
| ! | CCCTCCTTAAGGAAATTTTC+CGG | - | chr3.1:44324657-44324676 | MS.gene94933:intron | 40.0% |
| ! | CGAAGGTGTGTTTGAATTGA+GGG | + | chr3.1:44324090-44324109 | None:intergenic | 40.0% |
| !! | AGTCATACGAGAGAGTATTG+TGG | + | chr3.1:44323556-44323575 | None:intergenic | 40.0% |
| ACACCAACAGAAAAGCTCAC+AGG | + | chr3.1:44325418-44325437 | None:intergenic | 45.0% | |
| AGCCGCATACTGAGTATTTG+GGG | + | chr3.1:44325350-44325369 | None:intergenic | 45.0% | |
| AGGTTCGTTCACATATCCAC+GGG | + | chr3.1:44325398-44325417 | None:intergenic | 45.0% | |
| ATGTGTGTTATCCAGAGGAG+TGG | - | chr3.1:44325607-44325626 | MS.gene94933:CDS | 45.0% | |
| CAAACACACCTTCGGAGTAT+TGG | - | chr3.1:44324096-44324115 | MS.gene94933:intron | 45.0% | |
| CAGGTTCGTTCACATATCCA+CGG | + | chr3.1:44325399-44325418 | None:intergenic | 45.0% | |
| GAAACACACCAATACTCCGA+AGG | + | chr3.1:44324107-44324126 | None:intergenic | 45.0% | |
| GACCACCATCACTGATATTG+AGG | + | chr3.1:44325005-44325024 | None:intergenic | 45.0% | |
| GATGATAGGGCGATCAGATA+TGG | + | chr3.1:44323748-44323767 | None:intergenic | 45.0% | |
| GTAGGACTGTTTGCAATGGA+AGG | + | chr3.1:44323705-44323724 | None:intergenic | 45.0% | |
| GTCCCCAAATACTCAGTATG+CGG | - | chr3.1:44325345-44325364 | MS.gene94933:intron | 45.0% | |
| TCATACGGTATGAACTCCCT+TGG | + | chr3.1:44324867-44324886 | None:intergenic | 45.0% | |
| TCCGTATGTGTGTTATCCAG+AGG | - | chr3.1:44325602-44325621 | MS.gene94933:CDS | 45.0% | |
| TGTCGGAATTAGAGGCAGAT+AGG | + | chr3.1:44323620-44323639 | None:intergenic | 45.0% | |
| TTTCCGGTTGCTGCTAAATG+CGG | - | chr3.1:44324673-44324692 | MS.gene94933:intron | 45.0% | |
| ! | CCGAAGGTGTGTTTGAATTG+AGG | + | chr3.1:44324091-44324110 | None:intergenic | 45.0% |
| ! | GAACCTGTGAGCTTTTCTGT+TGG | - | chr3.1:44325412-44325431 | MS.gene94933:CDS | 45.0% |
| !!! | AGCTTTTCTGTTGGTGTCGA+TGG | - | chr3.1:44325421-44325440 | MS.gene94933:CDS | 45.0% |
| !!! | TTTTCTGTTGGTGTCGATGG+TGG | - | chr3.1:44325424-44325443 | MS.gene94933:CDS | 45.0% |
| ATGTGAAGGCCGAGAAAGAG+TGG | - | chr3.1:44324392-44324411 | MS.gene94933:intron | 50.0% | |
| ATTGTGGCGATGCAACCTTC+CGG | + | chr3.1:44323540-44323559 | None:intergenic | 50.0% | |
| CCTCTAATTCCGACACTGTC+TGG | - | chr3.1:44323625-44323644 | MS.gene94933:CDS | 50.0% | |
| GGGTGGTTGGAGATTGTGAT+GGG | - | chr3.1:44325544-44325563 | MS.gene94933:CDS | 50.0% | |
| GTCCTAGTGTGAGAAGCGAT+GGG | - | chr3.1:44325524-44325543 | MS.gene94933:CDS | 50.0% | |
| TGGGTGGTTGGAGATTGTGA+TGG | - | chr3.1:44325543-44325562 | MS.gene94933:CDS | 50.0% | |
| TTATCCAGAGGAGTGGTTCG+TGG | - | chr3.1:44325614-44325633 | MS.gene94933:CDS | 50.0% | |
| ! | CCAGACAGTGTCGGAATTAG+AGG | + | chr3.1:44323628-44323647 | None:intergenic | 50.0% |
| !! | GCTTTTGAGGAATTGCCGGA+AGG | - | chr3.1:44323522-44323541 | MS.gene94933:CDS | 50.0% |
| !! | TGGTCTTGTTCCCCTCCTTA+AGG | - | chr3.1:44324646-44324665 | MS.gene94933:intron | 50.0% |
| AGAGGAGTGGTTCGTGGTTG+AGG | - | chr3.1:44325620-44325639 | MS.gene94933:CDS | 55.0% | |
| AGGAGTGGTTCGTGGTTGAG+GGG | - | chr3.1:44325622-44325641 | MS.gene94933:CDS | 55.0% | |
| CACCCATCGCTTCTCACACT+AGG | + | chr3.1:44325529-44325548 | None:intergenic | 55.0% | |
| CGCCCTATCATCGTCAACGA+TGG | - | chr3.1:44323756-44323775 | MS.gene94933:CDS | 55.0% | |
| CGTCCTAGTGTGAGAAGCGA+TGG | - | chr3.1:44325523-44325542 | MS.gene94933:CDS | 55.0% | |
| CTAGTGTGAGAAGCGATGGG+TGG | - | chr3.1:44325527-44325546 | MS.gene94933:CDS | 55.0% | |
| GAGAGCCTGACAACGTCAAC+CGG | + | chr3.1:44323579-44323598 | None:intergenic | 55.0% | |
| GAGGAGTGGTTCGTGGTTGA+GGG | - | chr3.1:44325621-44325640 | MS.gene94933:CDS | 55.0% | |
| GCACCGCATTTAGCAGCAAC+CGG | + | chr3.1:44324679-44324698 | None:intergenic | 55.0% | |
| TCAACCACGAACCACTCCTC+TGG | + | chr3.1:44325621-44325640 | None:intergenic | 55.0% | |
| TGACTCCGGTTGACGTTGTC+AGG | - | chr3.1:44323571-44323590 | MS.gene94933:CDS | 55.0% | |
| TGAGAGATCTGGCAGCAAGC+AGG | + | chr3.1:44324357-44324376 | None:intergenic | 55.0% | |
| TGTGAGAAGCGATGGGTGGT+TGG | - | chr3.1:44325531-44325550 | MS.gene94933:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 44323498 | 44325684 | 44323498 | ID=MS.gene94933 |
| chr3.1 | mRNA | 44323498 | 44325684 | 44323498 | ID=MS.gene94933.t1;Parent=MS.gene94933 |
| chr3.1 | exon | 44325397 | 44325684 | 44325397 | ID=MS.gene94933.t1.exon1;Parent=MS.gene94933.t1 |
| chr3.1 | CDS | 44325397 | 44325684 | 44325397 | ID=cds.MS.gene94933.t1;Parent=MS.gene94933.t1 |
| chr3.1 | exon | 44324745 | 44324866 | 44324745 | ID=MS.gene94933.t1.exon2;Parent=MS.gene94933.t1 |
| chr3.1 | CDS | 44324745 | 44324866 | 44324745 | ID=cds.MS.gene94933.t1;Parent=MS.gene94933.t1 |
| chr3.1 | exon | 44323498 | 44323909 | 44323498 | ID=MS.gene94933.t1.exon3;Parent=MS.gene94933.t1 |
| chr3.1 | CDS | 44323498 | 44323909 | 44323498 | ID=cds.MS.gene94933.t1;Parent=MS.gene94933.t1 |
| Gene Sequence |
| Protein sequence |
