Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41430.t1 | XP_013469668.1 | 86.9 | 245 | 15 | 3 | 20 | 253 | 5 | 243 | 9.50E-114 | 420.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41430.t1 | Q9ZVQ6 | 39.9 | 281 | 129 | 8 | 4 | 270 | 14 | 268 | 2.9e-47 | 191.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41430.t1 | G8A225 | 86.9 | 245 | 15 | 3 | 20 | 253 | 5 | 243 | 6.8e-114 | 420.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41430.t1 | MTR_1g100613 | 86.585 | 246 | 16 | 3 | 20 | 254 | 5 | 244 | 2.61e-149 | 426 |
| MS.gene41430.t1 | MTR_1g100597 | 77.113 | 284 | 44 | 5 | 1 | 273 | 1 | 274 | 4.45e-146 | 418 |
| MS.gene41430.t1 | MTR_1g079180 | 66.901 | 284 | 62 | 4 | 1 | 271 | 1 | 265 | 5.20e-126 | 367 |
| MS.gene41430.t1 | MTR_1g079370 | 66.667 | 282 | 66 | 5 | 1 | 271 | 1 | 265 | 4.55e-123 | 360 |
| MS.gene41430.t1 | MTR_1g079460 | 64.912 | 285 | 67 | 4 | 1 | 271 | 1 | 266 | 5.19e-120 | 352 |
| MS.gene41430.t1 | MTR_1g079260 | 63.860 | 285 | 80 | 5 | 1 | 273 | 1 | 274 | 1.43e-118 | 348 |
| MS.gene41430.t1 | MTR_1g079230 | 63.860 | 285 | 81 | 5 | 1 | 273 | 1 | 275 | 1.52e-117 | 346 |
| MS.gene41430.t1 | MTR_1g079850 | 63.140 | 293 | 78 | 6 | 1 | 273 | 1 | 283 | 6.59e-114 | 337 |
| MS.gene41430.t1 | MTR_1g079200 | 62.718 | 287 | 68 | 6 | 1 | 271 | 1 | 264 | 1.15e-111 | 330 |
| MS.gene41430.t1 | MTR_1g079380 | 64.539 | 282 | 72 | 5 | 1 | 271 | 1 | 265 | 1.91e-110 | 328 |
| MS.gene41430.t1 | MTR_3g006850 | 57.792 | 308 | 87 | 7 | 3 | 273 | 16 | 317 | 6.46e-101 | 305 |
| MS.gene41430.t1 | MTR_1g079250 | 57.878 | 311 | 91 | 9 | 1 | 286 | 1 | 296 | 2.67e-96 | 293 |
| MS.gene41430.t1 | MTR_3g452600 | 57.762 | 277 | 89 | 4 | 4 | 271 | 10 | 267 | 2.46e-95 | 289 |
| MS.gene41430.t1 | MTR_1g026510 | 53.355 | 313 | 107 | 10 | 1 | 286 | 1 | 301 | 2.77e-92 | 282 |
| MS.gene41430.t1 | MTR_2g079100 | 56.458 | 271 | 96 | 5 | 3 | 268 | 8 | 261 | 1.76e-85 | 264 |
| MS.gene41430.t1 | MTR_1g079410 | 52.817 | 284 | 98 | 8 | 5 | 271 | 9 | 273 | 8.48e-83 | 257 |
| MS.gene41430.t1 | MTR_3g450990 | 51.186 | 295 | 96 | 6 | 4 | 271 | 10 | 283 | 4.27e-81 | 253 |
| MS.gene41430.t1 | MTR_1g079350 | 48.123 | 293 | 112 | 9 | 1 | 271 | 1 | 275 | 2.28e-71 | 228 |
| MS.gene41430.t1 | MTR_1g078470 | 61.421 | 197 | 57 | 5 | 76 | 271 | 6 | 184 | 1.08e-68 | 217 |
| MS.gene41430.t1 | MTR_1g079140 | 43.137 | 306 | 134 | 10 | 4 | 277 | 13 | 310 | 1.67e-66 | 216 |
| MS.gene41430.t1 | MTR_7g096300 | 52.256 | 266 | 88 | 9 | 1 | 251 | 1 | 242 | 4.77e-66 | 226 |
| MS.gene41430.t1 | MTR_1g079340 | 47.541 | 305 | 107 | 9 | 1 | 271 | 40 | 325 | 1.59e-65 | 214 |
| MS.gene41430.t1 | MTR_1g079400 | 42.617 | 298 | 113 | 8 | 4 | 272 | 12 | 280 | 6.57e-64 | 208 |
| MS.gene41430.t1 | MTR_1g079240 | 57.068 | 191 | 61 | 3 | 81 | 271 | 10 | 179 | 1.21e-58 | 191 |
| MS.gene41430.t1 | MTR_1g100607 | 91.837 | 98 | 8 | 0 | 375 | 472 | 112 | 209 | 5.85e-57 | 188 |
| MS.gene41430.t1 | MTR_1g100623 | 57.426 | 202 | 42 | 5 | 311 | 472 | 584 | 781 | 2.36e-55 | 197 |
| MS.gene41430.t1 | MTR_1g100623 | 57.426 | 202 | 42 | 5 | 311 | 472 | 632 | 829 | 4.19e-55 | 197 |
| MS.gene41430.t1 | MTR_7g112550 | 40.000 | 290 | 145 | 9 | 2 | 272 | 5 | 284 | 7.65e-55 | 185 |
| MS.gene41430.t1 | MTR_1g076870 | 67.164 | 134 | 38 | 3 | 124 | 251 | 2 | 135 | 3.66e-52 | 173 |
| MS.gene41430.t1 | MTR_1g083580 | 36.842 | 285 | 156 | 7 | 2 | 271 | 6 | 281 | 3.72e-52 | 177 |
| MS.gene41430.t1 | MTR_7g112560 | 35.395 | 291 | 133 | 11 | 4 | 272 | 1 | 258 | 8.82e-44 | 155 |
| MS.gene41430.t1 | MTR_1g079210 | 64.463 | 121 | 42 | 1 | 125 | 244 | 7 | 127 | 2.36e-42 | 147 |
| MS.gene41430.t1 | MTR_4g023570 | 33.452 | 281 | 132 | 7 | 4 | 272 | 1 | 238 | 1.03e-37 | 138 |
| MS.gene41430.t1 | MTR_1g079130 | 44.162 | 197 | 90 | 7 | 97 | 277 | 1 | 193 | 2.16e-37 | 135 |
| MS.gene41430.t1 | MTR_7g096310 | 54.887 | 133 | 40 | 4 | 57 | 182 | 44 | 163 | 7.05e-33 | 122 |
| MS.gene41430.t1 | MTR_3g058640 | 54.867 | 113 | 38 | 1 | 124 | 236 | 7 | 106 | 3.18e-30 | 113 |
| MS.gene41430.t1 | MTR_1g079350 | 48.921 | 139 | 50 | 3 | 1 | 124 | 1 | 133 | 7.86e-29 | 113 |
| MS.gene41430.t1 | MTR_1g100627 | 49.342 | 152 | 61 | 3 | 327 | 472 | 380 | 521 | 4.41e-26 | 111 |
| MS.gene41430.t1 | MTR_1g078460 | 62.069 | 87 | 23 | 1 | 1 | 77 | 64 | 150 | 1.05e-25 | 102 |
| MS.gene41430.t1 | MTR_2g042540 | 51.351 | 111 | 36 | 3 | 1 | 99 | 1 | 105 | 1.97e-23 | 95.9 |
| MS.gene41430.t1 | MTR_0113s0040 | 24.324 | 296 | 159 | 7 | 2 | 271 | 20 | 276 | 4.71e-19 | 87.8 |
| MS.gene41430.t1 | MTR_7g103380 | 23.630 | 292 | 167 | 9 | 6 | 270 | 21 | 283 | 1.61e-18 | 86.3 |
| MS.gene41430.t1 | MTR_1g079220 | 54.430 | 79 | 23 | 1 | 161 | 239 | 1 | 66 | 1.07e-17 | 77.8 |
| MS.gene41430.t1 | MTR_4g083970 | 27.895 | 190 | 104 | 4 | 85 | 271 | 131 | 290 | 9.06e-17 | 81.3 |
| MS.gene41430.t1 | MTR_1g101390 | 26.573 | 286 | 163 | 10 | 2 | 270 | 26 | 281 | 5.68e-15 | 75.9 |
| MS.gene41430.t1 | MTR_0002s0020 | 26.460 | 291 | 150 | 12 | 6 | 268 | 24 | 278 | 7.70e-14 | 72.4 |
| MS.gene41430.t1 | MTR_4g102770 | 24.653 | 288 | 159 | 9 | 6 | 270 | 21 | 273 | 2.64e-12 | 67.8 |
| MS.gene41430.t1 | MTR_1g079390 | 63.265 | 49 | 17 | 1 | 218 | 266 | 8 | 55 | 4.08e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41430.t1 | AT2G02360 | 39.858 | 281 | 129 | 8 | 4 | 270 | 14 | 268 | 5.05e-57 | 190 |
| MS.gene41430.t1 | AT2G02240 | 39.928 | 278 | 134 | 6 | 4 | 270 | 61 | 316 | 1.49e-51 | 177 |
| MS.gene41430.t1 | AT1G80110 | 40.511 | 274 | 133 | 10 | 6 | 270 | 3 | 255 | 3.69e-51 | 174 |
| MS.gene41430.t1 | AT2G02340 | 39.024 | 287 | 138 | 8 | 4 | 272 | 36 | 303 | 5.76e-49 | 170 |
| MS.gene41430.t1 | AT2G02250 | 38.489 | 278 | 139 | 8 | 4 | 270 | 47 | 303 | 9.10e-49 | 170 |
| MS.gene41430.t1 | AT2G02230 | 35.350 | 314 | 145 | 10 | 4 | 271 | 32 | 333 | 5.52e-46 | 163 |
| MS.gene41430.t1 | AT1G09155 | 38.276 | 290 | 142 | 10 | 7 | 271 | 3 | 280 | 9.01e-46 | 161 |
| MS.gene41430.t1 | AT1G56250 | 36.806 | 288 | 151 | 9 | 7 | 272 | 4 | 282 | 3.13e-40 | 146 |
| MS.gene41430.t1 | AT1G56240 | 36.364 | 286 | 151 | 9 | 7 | 270 | 4 | 280 | 1.84e-39 | 144 |
| MS.gene41430.t1 | AT2G02350 | 32.979 | 282 | 151 | 9 | 4 | 270 | 24 | 282 | 1.32e-37 | 139 |
| MS.gene41430.t1 | AT2G02320 | 34.276 | 283 | 142 | 9 | 6 | 270 | 42 | 298 | 1.85e-37 | 139 |
| MS.gene41430.t1 | AT2G02310 | 31.429 | 280 | 162 | 7 | 4 | 272 | 45 | 305 | 3.80e-35 | 133 |
| MS.gene41430.t1 | AT2G02300 | 32.982 | 285 | 139 | 10 | 4 | 272 | 34 | 282 | 2.65e-32 | 125 |
| MS.gene41430.t1 | AT5G24560 | 37.879 | 198 | 94 | 6 | 4 | 188 | 3 | 184 | 2.10e-30 | 117 |
| MS.gene41430.t1 | AT2G02350 | 31.844 | 179 | 103 | 6 | 97 | 270 | 1 | 165 | 7.43e-20 | 87.4 |
| MS.gene41430.t1 | AT3G53000 | 24.497 | 298 | 172 | 7 | 3 | 275 | 20 | 289 | 4.47e-19 | 88.2 |
| MS.gene41430.t1 | AT4G19850 | 29.843 | 191 | 96 | 5 | 90 | 272 | 59 | 219 | 9.46e-18 | 82.4 |
| MS.gene41430.t1 | AT4G19850 | 29.843 | 191 | 96 | 5 | 90 | 272 | 17 | 177 | 1.29e-17 | 80.9 |
| MS.gene41430.t1 | AT3G61060 | 24.648 | 284 | 167 | 10 | 6 | 271 | 27 | 281 | 8.45e-16 | 78.2 |
| MS.gene41430.t1 | AT3G61060 | 24.648 | 284 | 166 | 10 | 6 | 271 | 27 | 280 | 1.06e-15 | 77.8 |
| MS.gene41430.t1 | AT1G12710 | 24.232 | 293 | 163 | 6 | 3 | 272 | 27 | 283 | 4.29e-15 | 76.3 |
| MS.gene41430.t1 | AT4G19840 | 26.459 | 257 | 139 | 10 | 19 | 271 | 35 | 245 | 2.23e-13 | 70.5 |
| MS.gene41430.t1 | AT1G63090 | 27.442 | 215 | 115 | 7 | 3 | 188 | 25 | 227 | 3.67e-13 | 70.5 |
| MS.gene41430.t1 | AT5G52120 | 26.621 | 293 | 162 | 12 | 1 | 270 | 18 | 280 | 4.43e-13 | 70.1 |
| MS.gene41430.t1 | AT4G19850 | 36.000 | 100 | 58 | 2 | 90 | 183 | 59 | 158 | 5.20e-12 | 65.9 |
Find 112 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTGCATATTGAGTATT+TGG | 0.137691 | 1.4:+78357911 | None:intergenic |
| GACAGGGTTAAGAATTATTA+TGG | 0.214950 | 1.4:-78356008 | MS.gene41430:CDS |
| CTAGATCTCTTGCCATTACT+TGG | 0.259697 | 1.4:-78359277 | MS.gene41430:CDS |
| TAGCACTAAAATTGTTTGTT+TGG | 0.300698 | 1.4:-78357807 | MS.gene41430:CDS |
| CATTATCGACAATGGCAAAA+AGG | 0.318182 | 1.4:-78359458 | MS.gene41430:CDS |
| ATGGGAGAGTTCTTCAATTC+AGG | 0.321358 | 1.4:-78357659 | MS.gene41430:CDS |
| AAGCTGCATATTGAGTATTT+GGG | 0.339648 | 1.4:+78357912 | None:intergenic |
| ACTTCTAAGCTCAATAATAA+TGG | 0.341699 | 1.4:-78356295 | MS.gene41430:CDS |
| TTGCCATTGTCGATAATGAT+AGG | 0.347824 | 1.4:+78359463 | None:intergenic |
| TTAAGAATTATTATGGATCT+TGG | 0.355305 | 1.4:-78356001 | MS.gene41430:CDS |
| GATCAGATAGGGCAAGATAA+AGG | 0.356751 | 1.4:+78359488 | None:intergenic |
| GGATTGCTATGCCTGATTCC+AGG | 0.362529 | 1.4:-78359229 | MS.gene41430:intron |
| AGACGAAGTTTAGCAACTTC+GGG | 0.364842 | 1.4:+78357983 | None:intergenic |
| TGTAAATGCTCCTTCCAAAA+AGG | 0.366929 | 1.4:-78359512 | MS.gene41430:CDS |
| GACAAAAGAGGATGGAATAT+TGG | 0.368338 | 1.4:-78356102 | MS.gene41430:CDS |
| CCGCCTTTGCAAATTTATAG+TGG | 0.369310 | 1.4:+78356506 | None:intergenic |
| ATGACAACCGCTACTGGAAC+TGG | 0.371010 | 1.4:-78359250 | MS.gene41430:CDS |
| TATGAGTGTTATCGAGATAA+AGG | 0.385187 | 1.4:-78357618 | MS.gene41430:CDS |
| ATGTATACGAATTCCGCATT+TGG | 0.390839 | 1.4:+78357782 | None:intergenic |
| GAAAATGCAGAGCTTTCAAT+TGG | 0.391080 | 1.4:-78359336 | MS.gene41430:intron |
| TTCTCGAAGGAATAGAAGTT+AGG | 0.399223 | 1.4:-78357571 | MS.gene41430:CDS |
| TTCAAAATGATTGATTCCTA+TGG | 0.400444 | 1.4:-78357881 | MS.gene41430:CDS |
| TACATTCTCATCTCTGCTCT+TGG | 0.401251 | 1.4:-78356553 | MS.gene41430:CDS |
| TTAAGATCAAACCTGGAATC+AGG | 0.407191 | 1.4:+78359218 | None:intergenic |
| AGTATATTATGACGAGTTAG+TGG | 0.410054 | 1.4:-78356413 | MS.gene41430:CDS |
| TAATGATAGGTTGATCAGAT+AGG | 0.414184 | 1.4:+78359476 | None:intergenic |
| CAAGAAAAGGCATGGTTGAC+AGG | 0.416140 | 1.4:-78356025 | MS.gene41430:CDS |
| AGGTCAGATAACAGAGTAGT+AGG | 0.418025 | 1.4:-78357728 | MS.gene41430:CDS |
| GGGGTGATGACAACCGCTAC+TGG | 0.422453 | 1.4:-78359256 | MS.gene41430:CDS |
| ATACTTATAGGTGTAGGAAT+TGG | 0.428070 | 1.4:-78355861 | MS.gene41430:intron |
| CGGAGTCGTACGAGACAGTA+TGG | 0.434692 | 1.4:+78359627 | None:intergenic |
| TTATCTCGATAACACTCATA+TGG | 0.435546 | 1.4:+78357621 | None:intergenic |
| TAGATCTCTTGCCATTACTT+GGG | 0.440419 | 1.4:-78359276 | MS.gene41430:CDS |
| ATCAGATAGGGCAAGATAAA+GGG | 0.457911 | 1.4:+78359489 | None:intergenic |
| CTCTGACTTCTCATCCTCAC+TGG | 0.461543 | 1.4:+78356079 | None:intergenic |
| TGTGGTGATTGATTATCCTC+AGG | 0.467751 | 1.4:+78355969 | None:intergenic |
| AAGACGAAGTTTAGCAACTT+CGG | 0.467908 | 1.4:+78357982 | None:intergenic |
| GAGAATCTACCGGCGTCAAC+CGG | 0.472067 | 1.4:+78359607 | None:intergenic |
| TAGGATTGCCGCGGCCTAGT+TGG | 0.483978 | 1.4:-78357709 | MS.gene41430:CDS |
| TAAATTTGCAAAGGCGGTGC+GGG | 0.484515 | 1.4:-78356500 | MS.gene41430:CDS |
| CGCCTTTGCAAATTTATAGT+GGG | 0.488368 | 1.4:+78356507 | None:intergenic |
| CTGAGGCAGTATAGAATGAC+TGG | 0.497046 | 1.4:-78356585 | MS.gene41430:intron |
| GATAGAGTCGACGTCGGAAT+CGG | 0.497107 | 1.4:+78359555 | None:intergenic |
| TCAAAATGATTGATTCCTAT+GGG | 0.503514 | 1.4:-78357880 | MS.gene41430:CDS |
| GTTGGAGAAGTGGTAGGTGG+TGG | 0.510954 | 1.4:-78357691 | MS.gene41430:CDS |
| GACAGGGTTTGAAGATTTAG+CGG | 0.514285 | 1.4:-78359665 | MS.gene41430:CDS |
| GGCGGCAGAAAGGAAAGTCT+TGG | 0.517109 | 1.4:+78359576 | None:intergenic |
| TAAAGACTCTGTTGCAGATG+TGG | 0.521531 | 1.4:-78355820 | MS.gene41430:CDS |
| AGGAATAGAAGTTAGGCCTA+AGG | 0.524720 | 1.4:-78357564 | MS.gene41430:intron |
| AAACACAAAAGTTACAAAGA+TGG | 0.524910 | 1.4:-78356379 | MS.gene41430:CDS |
| TAGGTGGTGGGAGATTGAGA+TGG | 0.526412 | 1.4:-78357678 | MS.gene41430:CDS |
| GATTTATCTGTCGGTGTCGA+AGG | 0.528126 | 1.4:-78357839 | MS.gene41430:CDS |
| AGGTGGTGGGAGATTGAGAT+GGG | 0.529389 | 1.4:-78357677 | MS.gene41430:CDS |
| AATGATAGGTTGATCAGATA+GGG | 0.535784 | 1.4:+78359477 | None:intergenic |
| AGATCTCTTGCCATTACTTG+GGG | 0.535874 | 1.4:-78359275 | MS.gene41430:CDS |
| TTGGAGAAGTGGTAGGTGGT+GGG | 0.536804 | 1.4:-78357690 | MS.gene41430:CDS |
| GGGTTTGAAGATTTAGCGGA+AGG | 0.539826 | 1.4:-78359661 | MS.gene41430:CDS |
| CGTCGGAATCGGCGGCAGAA+AGG | 0.543849 | 1.4:+78359566 | None:intergenic |
| AGACGAGCCATTGACAAAAG+AGG | 0.544494 | 1.4:-78356114 | MS.gene41430:CDS |
| GTGTGGTGGCTCGAAATTCG+TGG | 0.547967 | 1.4:-78357959 | MS.gene41430:CDS |
| CTTCCTGTAGATTTATCTGT+CGG | 0.550684 | 1.4:-78357848 | MS.gene41430:CDS |
| AATGCGACTAGTCCAAGAAA+AGG | 0.553247 | 1.4:-78356038 | MS.gene41430:CDS |
| AAGGGCAATTTCTTTCTCGA+AGG | 0.553494 | 1.4:-78357584 | MS.gene41430:CDS |
| CACCTACCACTTCTCCAACT+AGG | 0.555718 | 1.4:+78357695 | None:intergenic |
| GTTGTCATCACCCCAAGTAA+TGG | 0.556839 | 1.4:+78359265 | None:intergenic |
| ACACCGACAGATAAATCTAC+AGG | 0.556842 | 1.4:+78357845 | None:intergenic |
| GCTAGCATGGGTGTGGATGA+AGG | 0.557052 | 1.4:-78355786 | MS.gene41430:CDS |
| GATAAAGGCTGGCGAGACAA+AGG | 0.558520 | 1.4:-78357603 | MS.gene41430:CDS |
| AAGTTTCATAATTGTCAAGA+GGG | 0.559133 | 1.4:+78356314 | None:intergenic |
| ATAAAGGCTGGCGAGACAAA+GGG | 0.561504 | 1.4:-78357602 | MS.gene41430:CDS |
| CTAAACTTCGTCTTGTGTGG+TGG | 0.562220 | 1.4:-78357973 | MS.gene41430:CDS |
| TTGCTAAACTTCGTCTTGTG+TGG | 0.565369 | 1.4:-78357976 | MS.gene41430:CDS |
| AGAGTCGACGTCGGAATCGG+CGG | 0.567587 | 1.4:+78359558 | None:intergenic |
| AGCTGAAGCTAGCATGGGTG+TGG | 0.569464 | 1.4:-78355793 | MS.gene41430:CDS |
| CATACTGTCTCGTACGACTC+CGG | 0.570766 | 1.4:-78359626 | MS.gene41430:CDS |
| AGTGTTATCGAGATAAAGGC+TGG | 0.573301 | 1.4:-78357614 | MS.gene41430:CDS |
| CAAATTTATAGTGGGATACA+CGG | 0.575656 | 1.4:+78356515 | None:intergenic |
| GGAACAAGCTGAAGCTAGCA+TGG | 0.579149 | 1.4:-78355799 | MS.gene41430:CDS |
| GAAGTTTCATAATTGTCAAG+AGG | 0.584235 | 1.4:+78356313 | None:intergenic |
| TTGATTGACATACTCTTGCA+AGG | 0.588571 | 1.4:+78356474 | None:intergenic |
| CCGCGGCCTAGTTGGAGAAG+TGG | 0.590220 | 1.4:-78357701 | MS.gene41430:CDS |
| CAACCTATCATTATCGACAA+TGG | 0.600808 | 1.4:-78359466 | MS.gene41430:CDS |
| AGCTGCATATTGAGTATTTG+GGG | 0.601395 | 1.4:+78357913 | None:intergenic |
| ATAAATTTGCAAAGGCGGTG+CGG | 0.602104 | 1.4:-78356501 | MS.gene41430:CDS |
| AGGAAGGTTCTCAAACCCAT+AGG | 0.604433 | 1.4:+78357865 | None:intergenic |
| CCACTATAAATTTGCAAAGG+CGG | 0.606056 | 1.4:-78356506 | MS.gene41430:CDS |
| ATATTGAGTATTTGGGGACA+AGG | 0.608473 | 1.4:+78357919 | None:intergenic |
| TGTTTGTTTGGATCCAAATG+CGG | 0.611023 | 1.4:-78357795 | MS.gene41430:CDS |
| GAGCCATTGACAAAAGAGGA+TGG | 0.611093 | 1.4:-78356110 | MS.gene41430:CDS |
| AAGAAAAGGCATGGTTGACA+GGG | 0.613899 | 1.4:-78356024 | MS.gene41430:CDS |
| TGTGGTGGCTCGAAATTCGT+GGG | 0.618223 | 1.4:-78357958 | MS.gene41430:CDS |
| TTATCTGTCGGTGTCGAAGG+TGG | 0.618376 | 1.4:-78357836 | MS.gene41430:CDS |
| GCATGGGTGTGGATGAAGGA+AGG | 0.618650 | 1.4:-78355782 | MS.gene41430:CDS |
| GACTAGTCCAAGAAAAGGCA+TGG | 0.619096 | 1.4:-78356033 | MS.gene41430:CDS |
| ATCTTGGTTTGCTAAACCTG+AGG | 0.626786 | 1.4:-78355985 | MS.gene41430:CDS |
| GGCAGTATAGAATGACTGGA+AGG | 0.631356 | 1.4:-78356581 | MS.gene41430:intron |
| ATCCCACTATAAATTTGCAA+AGG | 0.645777 | 1.4:-78356509 | MS.gene41430:CDS |
| TAGCAATCCAGTTCCAGTAG+CGG | 0.650859 | 1.4:+78359243 | None:intergenic |
| CTAGTTGGAGAAGTGGTAGG+TGG | 0.655061 | 1.4:-78357694 | MS.gene41430:CDS |
| TTCGTATACATCAGAGACAG+AGG | 0.658529 | 1.4:-78357770 | MS.gene41430:CDS |
| GGATGGAATATTGGCCAGTG+AGG | 0.660164 | 1.4:-78356093 | MS.gene41430:CDS |
| CGTACGACTCCGGTTGACGC+CGG | 0.662520 | 1.4:-78359616 | MS.gene41430:CDS |
| GGCCTAGTTGGAGAAGTGGT+AGG | 0.668040 | 1.4:-78357697 | MS.gene41430:CDS |
| GACGAAGTTTAGCAACTTCG+GGG | 0.672634 | 1.4:+78357984 | None:intergenic |
| GGAAACGACAGAGAATCTAC+CGG | 0.672922 | 1.4:+78359597 | None:intergenic |
| ACAGAGTAGTAGGATTGCCG+CGG | 0.680550 | 1.4:-78357718 | MS.gene41430:CDS |
| GAACAAGCTGAAGCTAGCAT+GGG | 0.683465 | 1.4:-78355798 | MS.gene41430:CDS |
| CGACAGATAAATCTACAGGA+AGG | 0.687255 | 1.4:+78357849 | None:intergenic |
| CCACTTCTCCAACTAGGCCG+CGG | 0.703895 | 1.4:+78357701 | None:intergenic |
| GAGGATAATCAATCACCACA+AGG | 0.728787 | 1.4:-78355966 | MS.gene41430:intron |
| TGAGACGATAGAGTCGACGT+CGG | 0.756214 | 1.4:+78359549 | None:intergenic |
| AGTCGTACGAGACAGTATGG+TGG | 0.758050 | 1.4:+78359630 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATCAATTTATCATATA+TGG | + | chr1.4:78357205-78357224 | None:intergenic | 15.0% |
| !! | TATTATATGATTGTTTATCA+TGG | + | chr1.4:78356471-78356490 | None:intergenic | 15.0% |
| !! | AAAATGAAGGGAAAAAAAAT+TGG | + | chr1.4:78356654-78356673 | None:intergenic | 20.0% |
| !! | AAACAAAAAATGGAGATAAA+GGG | - | chr1.4:78359205-78359224 | MS.gene41430:intron | 20.0% |
| !! | AATAAAAGTGAGAAAATGAA+GGG | + | chr1.4:78356666-78356685 | None:intergenic | 20.0% |
| !! | ATATCGTATGGTTTATTATA+TGG | - | chr1.4:78358731-78358750 | MS.gene41430:intron | 20.0% |
| !! | ATATGAAACATTCAATGAAA+TGG | + | chr1.4:78356757-78356776 | None:intergenic | 20.0% |
| !! | ATTCATAAACAATATCCTTA+AGG | + | chr1.4:78358134-78358153 | None:intergenic | 20.0% |
| !! | TGAATAACATAATGTTACAT+TGG | - | chr1.4:78358078-78358097 | MS.gene41430:intron | 20.0% |
| !! | TTAAGAATTATTATGGATCT+TGG | - | chr1.4:78359436-78359455 | MS.gene41430:intron | 20.0% |
| !!! | ATAAAAGACCCATTTTTTTA+CGG | + | chr1.4:78358769-78358788 | None:intergenic | 20.0% |
| ! | AAACACAAAAGTTACAAAGA+TGG | - | chr1.4:78359058-78359077 | MS.gene41430:intron | 25.0% |
| ! | AACAAAAAATGGAGATAAAG+GGG | - | chr1.4:78359206-78359225 | MS.gene41430:intron | 25.0% |
| ! | AAGTTTCATAATTGTCAAGA+GGG | + | chr1.4:78359126-78359145 | None:intergenic | 25.0% |
| ! | ACTTCTAAGCTCAATAATAA+TGG | - | chr1.4:78359142-78359161 | MS.gene41430:intron | 25.0% |
| ! | AGAAGAAAAAAAAGTTGAGA+AGG | + | chr1.4:78357388-78357407 | None:intergenic | 25.0% |
| ! | AGGATTCATAACATCAAAAA+TGG | + | chr1.4:78357368-78357387 | None:intergenic | 25.0% |
| ! | ATAAAATAAACCTCAAAGTG+TGG | - | chr1.4:78358252-78358271 | MS.gene41430:intron | 25.0% |
| ! | ATTGTTTATGAATCATGATC+CGG | - | chr1.4:78358141-78358160 | MS.gene41430:intron | 25.0% |
| ! | CAATAAAAGTGAGAAAATGA+AGG | + | chr1.4:78356667-78356686 | None:intergenic | 25.0% |
| ! | CAATTCTTGTATTCTTATCT+CGG | - | chr1.4:78357408-78357427 | MS.gene41430:intron | 25.0% |
| ! | CTAGAGCTTAAAAAAATCAA+AGG | + | chr1.4:78356626-78356645 | None:intergenic | 25.0% |
| ! | GAAACAAAAAATGGAGATAA+AGG | - | chr1.4:78359204-78359223 | MS.gene41430:intron | 25.0% |
| ! | TAGCACTAAAATTGTTTGTT+TGG | - | chr1.4:78357630-78357649 | MS.gene41430:CDS | 25.0% |
| ! | TATGCAAGATGAAAAACAAT+GGG | - | chr1.4:78356830-78356849 | MS.gene41430:intron | 25.0% |
| ! | TGGTTTATTATATGGAAGTT+TGG | - | chr1.4:78358739-78358758 | MS.gene41430:intron | 25.0% |
| !! | ATTCATTGTTTTCTCATGTT+AGG | - | chr1.4:78356012-78356031 | MS.gene41430:CDS | 25.0% |
| !! | GATGTTGTTGTTATACTTAT+AGG | - | chr1.4:78359564-78359583 | MS.gene41430:CDS | 25.0% |
| !! | TCAAAATGATTGATTCCTAT+GGG | - | chr1.4:78357557-78357576 | MS.gene41430:intron | 25.0% |
| !! | TTATCATAATCGATTTCACT+TGG | - | chr1.4:78357156-78357175 | MS.gene41430:intron | 25.0% |
| !! | TTCAAAATGATTGATTCCTA+TGG | - | chr1.4:78357556-78357575 | MS.gene41430:intron | 25.0% |
| !!! | AAACAATTTTAGTGCTACTA+TGG | + | chr1.4:78357627-78357646 | None:intergenic | 25.0% |
| !!! | ATTTTAGAAGCTTTACATGA+AGG | - | chr1.4:78359297-78359316 | MS.gene41430:CDS | 25.0% |
| !!! | CACTTTGAGGTTTATTTTAT+TGG | + | chr1.4:78358252-78358271 | None:intergenic | 25.0% |
| !!! | CTTCATTTTCTCACTTTTAT+TGG | - | chr1.4:78356665-78356684 | MS.gene41430:intron | 25.0% |
| !!! | CTTTGATTTTTTTAAGCTCT+AGG | - | chr1.4:78356624-78356643 | MS.gene41430:intron | 25.0% |
| !!! | GAGTTGTTTCAAAGTTTTTT+TGG | - | chr1.4:78357234-78357253 | MS.gene41430:intron | 25.0% |
| !!! | TTTTAGAAGCTTTACATGAA+GGG | - | chr1.4:78359298-78359317 | MS.gene41430:CDS | 25.0% |
| AAAAAATGAGGAGAAAGTGA+GGG | + | chr1.4:78356988-78357007 | None:intergenic | 30.0% | |
| AAGCTGCATATTGAGTATTT+GGG | + | chr1.4:78357528-78357547 | None:intergenic | 30.0% | |
| AATCATAGTTGTGAAATCCA+CGG | - | chr1.4:78358197-78358216 | MS.gene41430:intron | 30.0% | |
| ACCTTTGACCTTGAAATATA+AGG | - | chr1.4:78358510-78358529 | MS.gene41430:intron | 30.0% | |
| AGAAAAGTTAAGATCAAACC+TGG | + | chr1.4:78356229-78356248 | None:intergenic | 30.0% | |
| AGAGAAAAAGAATTACCTTG+TGG | + | chr1.4:78359489-78359508 | None:intergenic | 30.0% | |
| AGTATATTATGACGAGTTAG+TGG | - | chr1.4:78359024-78359043 | MS.gene41430:intron | 30.0% | |
| ATACTTATAGGTGTAGGAAT+TGG | - | chr1.4:78359576-78359595 | MS.gene41430:CDS | 30.0% | |
| ATCATATATGGTACCAATGA+TGG | + | chr1.4:78357193-78357212 | None:intergenic | 30.0% | |
| ATCCCACTATAAATTTGCAA+AGG | - | chr1.4:78358928-78358947 | MS.gene41430:intron | 30.0% | |
| ATGCTAGATGTGTAAATTGA+CGG | - | chr1.4:78356319-78356338 | MS.gene41430:CDS | 30.0% | |
| CATTATCCTCTGATTTATCT+AGG | + | chr1.4:78358819-78358838 | None:intergenic | 30.0% | |
| CCTTTGACCTTGAAATATAA+GGG | - | chr1.4:78358511-78358530 | MS.gene41430:intron | 30.0% | |
| CTATGCAAGATGAAAAACAA+TGG | - | chr1.4:78356829-78356848 | MS.gene41430:intron | 30.0% | |
| CTGGTGAGAATTATATGTAT+TGG | - | chr1.4:78358691-78358710 | MS.gene41430:intron | 30.0% | |
| CTTTGACCTTGAAATATAAG+GGG | - | chr1.4:78358512-78358531 | MS.gene41430:intron | 30.0% | |
| GAAGTTTCATAATTGTCAAG+AGG | + | chr1.4:78359127-78359146 | None:intergenic | 30.0% | |
| GACAGGGTTAAGAATTATTA+TGG | - | chr1.4:78359429-78359448 | MS.gene41430:intron | 30.0% | |
| GATCTACACTTTGACAAAAT+AGG | + | chr1.4:78358325-78358344 | None:intergenic | 30.0% | |
| GGAAATAATTTAGCCATCAT+TGG | - | chr1.4:78357177-78357196 | MS.gene41430:intron | 30.0% | |
| GTTGTTATACTTATAGGTGT+AGG | - | chr1.4:78359570-78359589 | MS.gene41430:CDS | 30.0% | |
| TAAAAAGAGTTATCTGACAG+TGG | + | chr1.4:78357096-78357115 | None:intergenic | 30.0% | |
| TAAGCTGCATATTGAGTATT+TGG | + | chr1.4:78357529-78357548 | None:intergenic | 30.0% | |
| TATGAGTGTTATCGAGATAA+AGG | - | chr1.4:78357819-78357838 | MS.gene41430:CDS | 30.0% | |
| TGAGAAGTTGAATATGCATA+AGG | - | chr1.4:78356930-78356949 | MS.gene41430:intron | 30.0% | |
| TTATCTCGATAACACTCATA+TGG | + | chr1.4:78357819-78357838 | None:intergenic | 30.0% | |
| TTATGAGAGTTCATATCGTA+TGG | - | chr1.4:78358719-78358738 | MS.gene41430:intron | 30.0% | |
| TTGGCAATCCGTAAAAAAAT+GGG | - | chr1.4:78358758-78358777 | MS.gene41430:intron | 30.0% | |
| TTGGGATTGAATAGTCTAAA+AGG | + | chr1.4:78357027-78357046 | None:intergenic | 30.0% | |
| TTTAGACTATTCAATCCCAA+AGG | - | chr1.4:78357027-78357046 | MS.gene41430:intron | 30.0% | |
| TTTGACCTTGAAATATAAGG+GGG | - | chr1.4:78358513-78358532 | MS.gene41430:intron | 30.0% | |
| TTTGGCAATCCGTAAAAAAA+TGG | - | chr1.4:78358757-78358776 | MS.gene41430:intron | 30.0% | |
| ! | AAAGTATGGATTGTATCTAG+AGG | + | chr1.4:78358556-78358575 | None:intergenic | 30.0% |
| ! | CAAATTTATAGTGGGATACA+CGG | + | chr1.4:78358925-78358944 | None:intergenic | 30.0% |
| ! | GATTTTGCAATCGTTTGATA+AGG | - | chr1.4:78357689-78357708 | MS.gene41430:CDS | 30.0% |
| ! | GCATTTTCAATATACCCAAA+GGG | + | chr1.4:78356089-78356108 | None:intergenic | 30.0% |
| ! | TCATATGGACTTCATTTTCA+AGG | + | chr1.4:78357804-78357823 | None:intergenic | 30.0% |
| ! | TGCATTTTCAATATACCCAA+AGG | + | chr1.4:78356090-78356109 | None:intergenic | 30.0% |
| ! | TTACAATTCTCCTCATTTTC+TGG | - | chr1.4:78356598-78356617 | MS.gene41430:intron | 30.0% |
| ! | TTGTTTTCTCATGTTAGGTA+AGG | - | chr1.4:78356017-78356036 | MS.gene41430:CDS | 30.0% |
| !! | AAATACTAAAGAGTGCCTTA+AGG | - | chr1.4:78358116-78358135 | MS.gene41430:intron | 30.0% |
| !! | AATGATAGGTTGATCAGATA+GGG | + | chr1.4:78355963-78355982 | None:intergenic | 30.0% |
| !! | GTTAGTACTCTTTTGAAAGT+TGG | - | chr1.4:78357272-78357291 | MS.gene41430:intron | 30.0% |
| !! | TAATGATAGGTTGATCAGAT+AGG | + | chr1.4:78355964-78355983 | None:intergenic | 30.0% |
| !!! | CAAACATTTTTAGGTGTGTT+TGG | - | chr1.4:78356350-78356369 | MS.gene41430:CDS | 30.0% |
| !!! | GATTTTTTTAAGCTCTAGGT+TGG | - | chr1.4:78356628-78356647 | MS.gene41430:intron | 30.0% |
| !!! | TTTCTCCTCATTTTTTCTTC+TGG | - | chr1.4:78356992-78357011 | MS.gene41430:intron | 30.0% |
| AAGACGAAGTTTAGCAACTT+CGG | + | chr1.4:78357458-78357477 | None:intergenic | 35.0% | |
| AATGAACAATTCGCCAAGAA+AGG | + | chr1.4:78356734-78356753 | None:intergenic | 35.0% | |
| ACACCTCAAAAGCTAAAGTA+TGG | - | chr1.4:78358623-78358642 | MS.gene41430:intron | 35.0% | |
| ACAGAACAGACATTTGTGTT+TGG | + | chr1.4:78356571-78356590 | None:intergenic | 35.0% | |
| ACATTCGTTGAACTATACCA+TGG | - | chr1.4:78357910-78357929 | MS.gene41430:CDS | 35.0% | |
| AGACATTTGTGTTTGGATTG+AGG | + | chr1.4:78356564-78356583 | None:intergenic | 35.0% | |
| AGATACCCCCTTATATTTCA+AGG | + | chr1.4:78358521-78358540 | None:intergenic | 35.0% | |
| AGATGAAAGTTTCCTTGATG+AGG | + | chr1.4:78356811-78356830 | None:intergenic | 35.0% | |
| AGCTGCATATTGAGTATTTG+GGG | + | chr1.4:78357527-78357546 | None:intergenic | 35.0% | |
| ATATTGAGTATTTGGGGACA+AGG | + | chr1.4:78357521-78357540 | None:intergenic | 35.0% | |
| ATCAAAGGAACCAGAAAATG+AGG | + | chr1.4:78356611-78356630 | None:intergenic | 35.0% | |
| ATCAGATAGGGCAAGATAAA+GGG | + | chr1.4:78355951-78355970 | None:intergenic | 35.0% | |
| ATGAAAGTTTCCTTGATGAG+GGG | + | chr1.4:78356809-78356828 | None:intergenic | 35.0% | |
| ATGGTGAATTCGAATTCGAA+TGG | - | chr1.4:78358642-78358661 | MS.gene41430:intron | 35.0% | |
| ATGTATACGAATTCCGCATT+TGG | + | chr1.4:78357658-78357677 | None:intergenic | 35.0% | |
| ATTGTTGACGTCAAAACTAG+AGG | + | chr1.4:78358301-78358320 | None:intergenic | 35.0% | |
| CAACCTATCATTATCGACAA+TGG | - | chr1.4:78355971-78355990 | MS.gene41430:CDS | 35.0% | |
| CATTATCGACAATGGCAAAA+AGG | - | chr1.4:78355979-78355998 | MS.gene41430:CDS | 35.0% | |
| CATTCGTTGAACTATACCAT+GGG | - | chr1.4:78357911-78357930 | MS.gene41430:CDS | 35.0% | |
| CATTGTTCTTTCTCCTTTCT+TGG | - | chr1.4:78356718-78356737 | MS.gene41430:intron | 35.0% | |
| CCACTATAAATTTGCAAAGG+CGG | - | chr1.4:78358931-78358950 | MS.gene41430:intron | 35.0% | |
| CCCTTATATTTCAAGGTCAA+AGG | + | chr1.4:78358514-78358533 | None:intergenic | 35.0% | |
| CGCCTTTGCAAATTTATAGT+GGG | + | chr1.4:78358933-78358952 | None:intergenic | 35.0% | |
| CTGCTAATAATAAGCCCTTT+GGG | - | chr1.4:78356072-78356091 | MS.gene41430:CDS | 35.0% | |
| CTTCCTGTAGATTTATCTGT+CGG | - | chr1.4:78357589-78357608 | MS.gene41430:CDS | 35.0% | |
| GAAAAAATGAGGAGAAAGTG+AGG | + | chr1.4:78356989-78357008 | None:intergenic | 35.0% | |
| GAAAATGCAGAGCTTTCAAT+TGG | - | chr1.4:78356101-78356120 | MS.gene41430:CDS | 35.0% | |
| GACAAAAGAGGATGGAATAT+TGG | - | chr1.4:78359335-78359354 | MS.gene41430:intron | 35.0% | |
| GACATTTGTGTTTGGATTGA+GGG | + | chr1.4:78356563-78356582 | None:intergenic | 35.0% | |
| GAGGGAACTGAAACAAAAAA+TGG | - | chr1.4:78359195-78359214 | MS.gene41430:intron | 35.0% | |
| GATGAAAGTTTCCTTGATGA+GGG | + | chr1.4:78356810-78356829 | None:intergenic | 35.0% | |
| GATTGACCTAGATAAATCAG+AGG | - | chr1.4:78358810-78358829 | MS.gene41430:intron | 35.0% | |
| GCTATCCAGAAGAAAAAATG+AGG | + | chr1.4:78357000-78357019 | None:intergenic | 35.0% | |
| GTCAAAGTGTAGATCAAGTA+AGG | - | chr1.4:78358330-78358349 | MS.gene41430:intron | 35.0% | |
| GTTAAAACATGCAAGAGAGA+AGG | + | chr1.4:78356699-78356718 | None:intergenic | 35.0% | |
| GTTGCTTAATTGTCTACCTT+AGG | + | chr1.4:78357892-78357911 | None:intergenic | 35.0% | |
| TACACATCTAGCATTCATAG+AGG | + | chr1.4:78356313-78356332 | None:intergenic | 35.0% | |
| TAGATCTCTTGCCATTACTT+GGG | - | chr1.4:78356161-78356180 | MS.gene41430:intron | 35.0% | |
| TGACTTACGCATGATATTAC+CGG | + | chr1.4:78358163-78358182 | None:intergenic | 35.0% | |
| TGCTAGATGTGTAAATTGAC+GGG | - | chr1.4:78356320-78356339 | MS.gene41430:CDS | 35.0% | |
| TGGTGAATTCGAATTCGAAT+GGG | - | chr1.4:78358643-78358662 | MS.gene41430:intron | 35.0% | |
| TGTAAATGCTCCTTCCAAAA+AGG | - | chr1.4:78355925-78355944 | MS.gene41430:intron | 35.0% | |
| TGTTTGTTTGGATCCAAATG+CGG | - | chr1.4:78357642-78357661 | MS.gene41430:CDS | 35.0% | |
| TTAAGATCAAACCTGGAATC+AGG | + | chr1.4:78356222-78356241 | None:intergenic | 35.0% | |
| TTCTCGAAGGAATAGAAGTT+AGG | - | chr1.4:78357866-78357885 | MS.gene41430:CDS | 35.0% | |
| TTGATTGACATACTCTTGCA+AGG | + | chr1.4:78358966-78358985 | None:intergenic | 35.0% | |
| TTGCCATTGTCGATAATGAT+AGG | + | chr1.4:78355977-78355996 | None:intergenic | 35.0% | |
| TTGTTGACGTCAAAACTAGA+GGG | + | chr1.4:78358300-78358319 | None:intergenic | 35.0% | |
| ! | AGAAGATAAGGCACTTTCTT+AGG | - | chr1.4:78359272-78359291 | MS.gene41430:CDS | 35.0% |
| ! | ATGGATTGTATCTAGAGGTA+GGG | + | chr1.4:78358551-78358570 | None:intergenic | 35.0% |
| ! | ATGTCACTTGTTGGAAAGTA+TGG | + | chr1.4:78358570-78358589 | None:intergenic | 35.0% |
| ! | ATTCCATCCTCTTTTGTCAA+TGG | + | chr1.4:78359333-78359352 | None:intergenic | 35.0% |
| ! | GGTCACACTCAAACATTTTT+AGG | - | chr1.4:78356341-78356360 | MS.gene41430:CDS | 35.0% |
| ! | TATGGATTGTATCTAGAGGT+AGG | + | chr1.4:78358552-78358571 | None:intergenic | 35.0% |
| ! | TTTGAGGTGTTTAAAGCTCT+TGG | + | chr1.4:78358613-78358632 | None:intergenic | 35.0% |
| !!! | AATAGAACTCTAGTTTTCGC+TGG | - | chr1.4:78358672-78358691 | MS.gene41430:intron | 35.0% |
| !!! | CATTTTTAGGTGTGTTTGGA+TGG | - | chr1.4:78356354-78356373 | MS.gene41430:CDS | 35.0% |
| !!! | TCACCATACTTTAGCTTTTG+AGG | + | chr1.4:78358629-78358648 | None:intergenic | 35.0% |
| AAGGCCTAGTGAAGAAGATA+AGG | - | chr1.4:78359260-78359279 | MS.gene41430:CDS | 40.0% | |
| AAGGGCAATTTCTTTCTCGA+AGG | - | chr1.4:78357853-78357872 | MS.gene41430:CDS | 40.0% | |
| ACAAGTGACATAAGATCACC+TGG | - | chr1.4:78358579-78358598 | MS.gene41430:intron | 40.0% | |
| ACACCGACAGATAAATCTAC+AGG | + | chr1.4:78357595-78357614 | None:intergenic | 40.0% | |
| ACTATTTGGCTGAGAAGCTA+AGG | - | chr1.4:78359241-78359260 | MS.gene41430:CDS | 40.0% | |
| AGACGAAGTTTAGCAACTTC+GGG | + | chr1.4:78357457-78357476 | None:intergenic | 40.0% | |
| AGATCTCTTGCCATTACTTG+GGG | - | chr1.4:78356162-78356181 | MS.gene41430:intron | 40.0% | |
| AGGAATAGAAGTTAGGCCTA+AGG | - | chr1.4:78357873-78357892 | MS.gene41430:CDS | 40.0% | |
| AGGTCAGATAACAGAGTAGT+AGG | - | chr1.4:78357709-78357728 | MS.gene41430:CDS | 40.0% | |
| AGTGCCTTATCTTCTTCACT+AGG | + | chr1.4:78359267-78359286 | None:intergenic | 40.0% | |
| AGTGTTATCGAGATAAAGGC+TGG | - | chr1.4:78357823-78357842 | MS.gene41430:CDS | 40.0% | |
| ATAAATTTGCAAAGGCGGTG+CGG | - | chr1.4:78358936-78358955 | MS.gene41430:intron | 40.0% | |
| ATCTGAGTTCACACTGTTGA+TGG | - | chr1.4:78356775-78356794 | MS.gene41430:intron | 40.0% | |
| ATGGGAGAGTTCTTCAATTC+AGG | - | chr1.4:78357778-78357797 | MS.gene41430:CDS | 40.0% | |
| ATTCCCGGTACAAGAGATAA+GGG | + | chr1.4:78356875-78356894 | None:intergenic | 40.0% | |
| CAGTAATGAGCTAGCAATGA+GGG | - | chr1.4:78359177-78359196 | MS.gene41430:intron | 40.0% | |
| CCAAGTTAACCAGAGATCTT+GGG | + | chr1.4:78358366-78358385 | None:intergenic | 40.0% | |
| CCGCCTTTGCAAATTTATAG+TGG | + | chr1.4:78358934-78358953 | None:intergenic | 40.0% | |
| CGACAGATAAATCTACAGGA+AGG | + | chr1.4:78357591-78357610 | None:intergenic | 40.0% | |
| CTAGATCTCTTGCCATTACT+TGG | - | chr1.4:78356160-78356179 | MS.gene41430:intron | 40.0% | |
| CTGTTACAGAGGTTCAGATT+CGG | + | chr1.4:78357064-78357083 | None:intergenic | 40.0% | |
| GACAGGGTTTGAAGATTTAG+CGG | - | chr1.4:78355772-78355791 | MS.gene41430:CDS | 40.0% | |
| GAGGATAATCAATCACCACA+AGG | - | chr1.4:78359471-78359490 | MS.gene41430:CDS | 40.0% | |
| GAGGATAATGACAGATGTTG+AGG | - | chr1.4:78358829-78358848 | MS.gene41430:intron | 40.0% | |
| GATCAGATAGGGCAAGATAA+AGG | + | chr1.4:78355952-78355971 | None:intergenic | 40.0% | |
| GCAAGATGAAAAACAATGGG+AGG | - | chr1.4:78356833-78356852 | MS.gene41430:intron | 40.0% | |
| GCTGCTAATAATAAGCCCTT+TGG | - | chr1.4:78356071-78356090 | MS.gene41430:CDS | 40.0% | |
| GGCTACTGTGAAAGACTATT+TGG | - | chr1.4:78359227-78359246 | MS.gene41430:intron | 40.0% | |
| GGTGAATTCGAATTCGAATG+GGG | - | chr1.4:78358644-78358663 | MS.gene41430:intron | 40.0% | |
| GTACAAGAGATAAGGGCTAA+CGG | + | chr1.4:78356868-78356887 | None:intergenic | 40.0% | |
| GTGAATTCGAATTCGAATGG+GGG | - | chr1.4:78358645-78358664 | MS.gene41430:intron | 40.0% | |
| TAAAGACTCTGTTGCAGATG+TGG | - | chr1.4:78359617-78359636 | MS.gene41430:CDS | 40.0% | |
| TACATTCTCATCTCTGCTCT+TGG | - | chr1.4:78358884-78358903 | MS.gene41430:intron | 40.0% | |
| TCAGTAATGAGCTAGCAATG+AGG | - | chr1.4:78359176-78359195 | MS.gene41430:intron | 40.0% | |
| TCCAAGTTAACCAGAGATCT+TGG | + | chr1.4:78358367-78358386 | None:intergenic | 40.0% | |
| TCGGGTGTATAGTTTCCTTT+GGG | + | chr1.4:78357045-78357064 | None:intergenic | 40.0% | |
| TGATTTGAACCCAAGATCTC+TGG | - | chr1.4:78358354-78358373 | MS.gene41430:intron | 40.0% | |
| TGGATTGTATCTAGAGGTAG+GGG | + | chr1.4:78358550-78358569 | None:intergenic | 40.0% | |
| TGTGGTGATTGATTATCCTC+AGG | + | chr1.4:78359471-78359490 | None:intergenic | 40.0% | |
| TGTTACAGAGGTTCAGATTC+GGG | + | chr1.4:78357063-78357082 | None:intergenic | 40.0% | |
| TGTTGACGTCAAAACTAGAG+GGG | + | chr1.4:78358299-78358318 | None:intergenic | 40.0% | |
| TTAGCCCTTATCTCTTGTAC+CGG | - | chr1.4:78356868-78356887 | MS.gene41430:intron | 40.0% | |
| TTCGGGTGTATAGTTTCCTT+TGG | + | chr1.4:78357046-78357065 | None:intergenic | 40.0% | |
| TTCGTATACATCAGAGACAG+AGG | - | chr1.4:78357667-78357686 | MS.gene41430:CDS | 40.0% | |
| TTGCTAAACTTCGTCTTGTG+TGG | - | chr1.4:78357461-78357480 | MS.gene41430:intron | 40.0% | |
| TTTAGGTGTGTTTGGATGGA+GGG | - | chr1.4:78356358-78356377 | MS.gene41430:CDS | 40.0% | |
| ! | AAGAAAAGCCAGTTGATTCC+CGG | + | chr1.4:78356890-78356909 | None:intergenic | 40.0% |
| ! | AAGAAAAGGCATGGTTGACA+GGG | - | chr1.4:78359413-78359432 | MS.gene41430:intron | 40.0% |
| ! | AATGCGACTAGTCCAAGAAA+AGG | - | chr1.4:78359399-78359418 | MS.gene41430:intron | 40.0% |
| ! | AGATAAAGGGCCTTTTTGGA+AGG | + | chr1.4:78355938-78355957 | None:intergenic | 40.0% |
| ! | GGTGATCTTATGTCACTTGT+TGG | + | chr1.4:78358579-78358598 | None:intergenic | 40.0% |
| ! | TATCTCGGCAACTTTTGTGT+TGG | - | chr1.4:78357423-78357442 | MS.gene41430:intron | 40.0% |
| ! | TGCTGATTGTGGAAAATGAG+AGG | - | chr1.4:78358788-78358807 | MS.gene41430:intron | 40.0% |
| !! | ATCTTGGTTTGCTAAACCTG+AGG | - | chr1.4:78359452-78359471 | MS.gene41430:CDS | 40.0% |
| !! | TGGGTCTTTTATGCTGATTG+TGG | - | chr1.4:78358777-78358796 | MS.gene41430:intron | 40.0% |
| !! | TTTTAGGTGTGTTTGGATGG+AGG | - | chr1.4:78356357-78356376 | MS.gene41430:CDS | 40.0% |
| AAAGAGCCCTAGAGATGGTA+AGG | + | chr1.4:78358413-78358432 | None:intergenic | 45.0% | |
| AAATGAGGAGAAAGTGAGGG+AGG | + | chr1.4:78356985-78357004 | None:intergenic | 45.0% | |
| AAGAGCCCTAGAGATGGTAA+GGG | + | chr1.4:78358412-78358431 | None:intergenic | 45.0% | |
| AAGCTCTTGGTCAAAAGACC+AGG | + | chr1.4:78358600-78358619 | None:intergenic | 45.0% | |
| AATGACAGATGTTGAGGCTG+AGG | - | chr1.4:78358835-78358854 | MS.gene41430:intron | 45.0% | |
| AGACGAGCCATTGACAAAAG+AGG | - | chr1.4:78359323-78359342 | MS.gene41430:CDS | 45.0% | |
| AGGAAGGTTCTCAAACCCAT+AGG | + | chr1.4:78357575-78357594 | None:intergenic | 45.0% | |
| ATAAAGGCTGGCGAGACAAA+GGG | - | chr1.4:78357835-78357854 | MS.gene41430:CDS | 45.0% | |
| CCCAAGATCTCTGGTTAACT+TGG | - | chr1.4:78358363-78358382 | MS.gene41430:intron | 45.0% | |
| CTAAACTTCGTCTTGTGTGG+TGG | - | chr1.4:78357464-78357483 | MS.gene41430:intron | 45.0% | |
| CTGAGGCAGTATAGAATGAC+TGG | - | chr1.4:78358852-78358871 | MS.gene41430:intron | 45.0% | |
| GAACAAGCTGAAGCTAGCAT+GGG | - | chr1.4:78359639-78359658 | MS.gene41430:CDS | 45.0% | |
| GAACCTCTGTAACAGTGATG+TGG | - | chr1.4:78357069-78357088 | MS.gene41430:intron | 45.0% | |
| GACGAAGTTTAGCAACTTCG+GGG | + | chr1.4:78357456-78357475 | None:intergenic | 45.0% | |
| GAGCCATTGACAAAAGAGGA+TGG | - | chr1.4:78359327-78359346 | MS.gene41430:CDS | 45.0% | |
| GATTCCCGGTACAAGAGATA+AGG | + | chr1.4:78356876-78356895 | None:intergenic | 45.0% | |
| GGAAACGACAGAGAATCTAC+CGG | + | chr1.4:78355843-78355862 | None:intergenic | 45.0% | |
| GGATTGTATCTAGAGGTAGG+GGG | + | chr1.4:78358549-78358568 | None:intergenic | 45.0% | |
| GGCAGTATAGAATGACTGGA+AGG | - | chr1.4:78358856-78358875 | MS.gene41430:intron | 45.0% | |
| GGGTTTGAAGATTTAGCGGA+AGG | - | chr1.4:78355776-78355795 | MS.gene41430:CDS | 45.0% | |
| GTAAGGGGTAGAGATGGTAA+GGG | + | chr1.4:78358396-78358415 | None:intergenic | 45.0% | |
| GTGAAATCCACGGAATCAAG+TGG | - | chr1.4:78358207-78358226 | MS.gene41430:intron | 45.0% | |
| GTTGTCATCACCCCAAGTAA+TGG | + | chr1.4:78356175-78356194 | None:intergenic | 45.0% | |
| GTTTCCTTGATGAGGGGAAT+AGG | + | chr1.4:78356803-78356822 | None:intergenic | 45.0% | |
| TAAATTTGCAAAGGCGGTGC+GGG | - | chr1.4:78358937-78358956 | MS.gene41430:intron | 45.0% | |
| TAAGGGGTAGAGATGGTAAG+GGG | + | chr1.4:78358395-78358414 | None:intergenic | 45.0% | |
| TAGCAATCCAGTTCCAGTAG+CGG | + | chr1.4:78356197-78356216 | None:intergenic | 45.0% | |
| TAGCCCTTATCTCTTGTACC+GGG | - | chr1.4:78356869-78356888 | MS.gene41430:intron | 45.0% | |
| TCTACCCCTTACCATCTCTA+GGG | - | chr1.4:78358404-78358423 | MS.gene41430:intron | 45.0% | |
| TGTGTTTGGATGGAGGGTTT+AGG | - | chr1.4:78356364-78356383 | MS.gene41430:CDS | 45.0% | |
| TTATGAGCCACTTGATTCCG+TGG | + | chr1.4:78358217-78358236 | None:intergenic | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+GGG | - | chr1.4:78356368-78356387 | MS.gene41430:CDS | 45.0% | |
| ! | ATACCATGGGTCTTGTCTCT+TGG | - | chr1.4:78357924-78357943 | MS.gene41430:CDS | 45.0% |
| ! | CAAGAAAAGGCATGGTTGAC+AGG | - | chr1.4:78359412-78359431 | MS.gene41430:intron | 45.0% |
| ! | CTGTCAACCATGCCTTTTCT+TGG | + | chr1.4:78359414-78359433 | None:intergenic | 45.0% |
| ! | GACTAGTCCAAGAAAAGGCA+TGG | - | chr1.4:78359404-78359423 | MS.gene41430:intron | 45.0% |
| ! | GGCAAGATAAAGGGCCTTTT+TGG | + | chr1.4:78355942-78355961 | None:intergenic | 45.0% |
| !! | GATTTATCTGTCGGTGTCGA+AGG | - | chr1.4:78357598-78357617 | MS.gene41430:CDS | 45.0% |
| !! | TACCATCTCTAGGGCTCTTT+GGG | - | chr1.4:78358413-78358432 | MS.gene41430:intron | 45.0% |
| !! | TTACCATCTCTAGGGCTCTT+TGG | - | chr1.4:78358412-78358431 | MS.gene41430:intron | 45.0% |
| ACAGAGTAGTAGGATTGCCG+CGG | - | chr1.4:78357719-78357738 | MS.gene41430:CDS | 50.0% | |
| AGAGCCCTAGAGATGGTAAG+GGG | + | chr1.4:78358411-78358430 | None:intergenic | 50.0% | |
| AGTCGTACGAGACAGTATGG+TGG | + | chr1.4:78355810-78355829 | None:intergenic | 50.0% | |
| ATGACAACCGCTACTGGAAC+TGG | - | chr1.4:78356187-78356206 | MS.gene41430:intron | 50.0% | |
| ATTGCACGTGCCACACTTTG+AGG | + | chr1.4:78358265-78358284 | None:intergenic | 50.0% | |
| CACCTACCACTTCTCCAACT+AGG | + | chr1.4:78357745-78357764 | None:intergenic | 50.0% | |
| CATACTGTCTCGTACGACTC+CGG | - | chr1.4:78355811-78355830 | MS.gene41430:CDS | 50.0% | |
| CATCCAAGAGACAAGACCCA+TGG | + | chr1.4:78357930-78357949 | None:intergenic | 50.0% | |
| CTAGTTGGAGAAGTGGTAGG+TGG | - | chr1.4:78357743-78357762 | MS.gene41430:CDS | 50.0% | |
| CTCTACCCCTTACCATCTCT+AGG | - | chr1.4:78358403-78358422 | MS.gene41430:intron | 50.0% | |
| CTCTGACTTCTCATCCTCAC+TGG | + | chr1.4:78359361-78359380 | None:intergenic | 50.0% | |
| CTCTTGTACCGGGAATCAAC+TGG | - | chr1.4:78356879-78356898 | MS.gene41430:intron | 50.0% | |
| GAAAGTGAGGGAGGCTGAAA+TGG | + | chr1.4:78356976-78356995 | None:intergenic | 50.0% | |
| GAGATGGTAAGGGGTAGAGA+TGG | + | chr1.4:78358402-78358421 | None:intergenic | 50.0% | |
| GATAAAGGCTGGCGAGACAA+AGG | - | chr1.4:78357834-78357853 | MS.gene41430:CDS | 50.0% | |
| GATAGAGTCGACGTCGGAAT+CGG | + | chr1.4:78355885-78355904 | None:intergenic | 50.0% | |
| GGAACAAGCTGAAGCTAGCA+TGG | - | chr1.4:78359638-78359657 | MS.gene41430:CDS | 50.0% | |
| GGACCACATCACTGTTACAG+AGG | + | chr1.4:78357075-78357094 | None:intergenic | 50.0% | |
| GGATCCTATTCCCCTCATCA+AGG | - | chr1.4:78356796-78356815 | MS.gene41430:intron | 50.0% | |
| GGATGGAATATTGGCCAGTG+AGG | - | chr1.4:78359344-78359363 | MS.gene41430:intron | 50.0% | |
| GGATTGCTATGCCTGATTCC+AGG | - | chr1.4:78356208-78356227 | MS.gene41430:intron | 50.0% | |
| GGTAAGGGGTAGAGATGGTA+AGG | + | chr1.4:78358397-78358416 | None:intergenic | 50.0% | |
| GTTTGGATGGAGGGTTTAGG+AGG | - | chr1.4:78356367-78356386 | MS.gene41430:CDS | 50.0% | |
| TGAGACGATAGAGTCGACGT+CGG | + | chr1.4:78355891-78355910 | None:intergenic | 50.0% | |
| TGTGGTGGCTCGAAATTCGT+GGG | - | chr1.4:78357479-78357498 | MS.gene41430:intron | 50.0% | |
| TTGGAGAAGTGGTAGGTGGT+GGG | - | chr1.4:78357747-78357766 | MS.gene41430:CDS | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+GGG | - | chr1.4:78356369-78356388 | MS.gene41430:CDS | 50.0% | |
| ! | CATGGGTCTTGTCTCTTGGA+TGG | - | chr1.4:78357928-78357947 | MS.gene41430:CDS | 50.0% |
| ! | CGGCAACTTTTGTGTTGGAC+AGG | - | chr1.4:78357428-78357447 | MS.gene41430:intron | 50.0% |
| !! | AGGTGGTGGGAGATTGAGAT+GGG | - | chr1.4:78357760-78357779 | MS.gene41430:CDS | 50.0% |
| !! | TAGGTGGTGGGAGATTGAGA+TGG | - | chr1.4:78357759-78357778 | MS.gene41430:CDS | 50.0% |
| !! | TTATCTGTCGGTGTCGAAGG+TGG | - | chr1.4:78357601-78357620 | MS.gene41430:CDS | 50.0% |
| AGCTGAAGCTAGCATGGGTG+TGG | - | chr1.4:78359644-78359663 | MS.gene41430:CDS | 55.0% | |
| CACCCAAAGAGCCCTAGAGA+TGG | + | chr1.4:78358418-78358437 | None:intergenic | 55.0% | |
| CGGAGTCGTACGAGACAGTA+TGG | + | chr1.4:78355813-78355832 | None:intergenic | 55.0% | |
| GAGAATCTACCGGCGTCAAC+CGG | + | chr1.4:78355833-78355852 | None:intergenic | 55.0% | |
| GCATGGGTGTGGATGAAGGA+AGG | - | chr1.4:78359655-78359674 | MS.gene41430:CDS | 55.0% | |
| GCTAGCATGGGTGTGGATGA+AGG | - | chr1.4:78359651-78359670 | MS.gene41430:CDS | 55.0% | |
| GGCCTAGTTGGAGAAGTGGT+AGG | - | chr1.4:78357740-78357759 | MS.gene41430:CDS | 55.0% | |
| GGCGGCAGAAAGGAAAGTCT+TGG | + | chr1.4:78355864-78355883 | None:intergenic | 55.0% | |
| GTGTGGTGGCTCGAAATTCG+TGG | - | chr1.4:78357478-78357497 | MS.gene41430:intron | 55.0% | |
| GTTGGAGAAGTGGTAGGTGG+TGG | - | chr1.4:78357746-78357765 | MS.gene41430:CDS | 55.0% | |
| TGGATGGAGGGTTTAGGAGG+GGG | - | chr1.4:78356370-78356389 | MS.gene41430:CDS | 55.0% | |
| AGAGTCGACGTCGGAATCGG+CGG | + | chr1.4:78355882-78355901 | None:intergenic | 60.0% | |
| CCACTTCTCCAACTAGGCCG+CGG | + | chr1.4:78357739-78357758 | None:intergenic | 60.0% | |
| GGGGTGATGACAACCGCTAC+TGG | - | chr1.4:78356181-78356200 | MS.gene41430:intron | 60.0% | |
| TAGGATTGCCGCGGCCTAGT+TGG | - | chr1.4:78357728-78357747 | MS.gene41430:CDS | 60.0% | |
| TGGAGGGTTTAGGAGGGGGA+CGG | - | chr1.4:78356374-78356393 | MS.gene41430:CDS | 60.0% | |
| CCGCGGCCTAGTTGGAGAAG+TGG | - | chr1.4:78357736-78357755 | MS.gene41430:CDS | 65.0% | |
| CGTACGACTCCGGTTGACGC+CGG | - | chr1.4:78355821-78355840 | MS.gene41430:CDS | 65.0% | |
| CGTCGGAATCGGCGGCAGAA+AGG | + | chr1.4:78355874-78355893 | None:intergenic | 65.0% | |
| GGAGGGTTTAGGAGGGGGAC+GGG | - | chr1.4:78356375-78356394 | MS.gene41430:CDS | 65.0% | |
| GGTTTAGGAGGGGGACGGGA+GGG | - | chr1.4:78356379-78356398 | MS.gene41430:CDS | 65.0% | |
| GTTTAGGAGGGGGACGGGAG+GGG | - | chr1.4:78356380-78356399 | MS.gene41430:CDS | 65.0% | |
| GGGTTTAGGAGGGGGACGGG+AGG | - | chr1.4:78356378-78356397 | MS.gene41430:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 78355770 | 78359689 | 78355770 | ID=MS.gene41430 |
| chr1.4 | mRNA | 78355770 | 78359689 | 78355770 | ID=MS.gene41430.t1;Parent=MS.gene41430 |
| chr1.4 | exon | 78359441 | 78359689 | 78359441 | ID=MS.gene41430.t1.exon1;Parent=MS.gene41430.t1 |
| chr1.4 | CDS | 78359441 | 78359689 | 78359441 | ID=cds.MS.gene41430.t1;Parent=MS.gene41430.t1 |
| chr1.4 | exon | 78359230 | 78359348 | 78359230 | ID=MS.gene41430.t1.exon2;Parent=MS.gene41430.t1 |
| chr1.4 | CDS | 78359230 | 78359348 | 78359230 | ID=cds.MS.gene41430.t1;Parent=MS.gene41430.t1 |
| chr1.4 | exon | 78357565 | 78358009 | 78357565 | ID=MS.gene41430.t1.exon3;Parent=MS.gene41430.t1 |
| chr1.4 | CDS | 78357565 | 78358009 | 78357565 | ID=cds.MS.gene41430.t1;Parent=MS.gene41430.t1 |
| chr1.4 | exon | 78356281 | 78356593 | 78356281 | ID=MS.gene41430.t1.exon4;Parent=MS.gene41430.t1 |
| chr1.4 | CDS | 78356281 | 78356593 | 78356281 | ID=cds.MS.gene41430.t1;Parent=MS.gene41430.t1 |
| chr1.4 | exon | 78355967 | 78356155 | 78355967 | ID=MS.gene41430.t1.exon5;Parent=MS.gene41430.t1 |
| chr1.4 | CDS | 78355967 | 78356155 | 78355967 | ID=cds.MS.gene41430.t1;Parent=MS.gene41430.t1 |
| chr1.4 | exon | 78355770 | 78355873 | 78355770 | ID=MS.gene41430.t1.exon6;Parent=MS.gene41430.t1 |
| chr1.4 | CDS | 78355770 | 78355873 | 78355770 | ID=cds.MS.gene41430.t1;Parent=MS.gene41430.t1 |
| Gene Sequence |
| Protein sequence |
