AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07577

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07577.t1 MTR_1g079350 96.014 276 10 1 1 276 1 275 0.0 549
MS.gene07577.t1 MTR_1g079180 61.011 277 95 6 1 276 1 265 5.52e-104 303
MS.gene07577.t1 MTR_1g079460 60.145 276 100 5 1 276 1 266 2.35e-101 297
MS.gene07577.t1 MTR_1g079370 58.123 277 103 6 1 276 1 265 3.59e-100 294
MS.gene07577.t1 MTR_1g079340 58.362 293 98 8 1 276 40 325 8.10e-99 292
MS.gene07577.t1 MTR_1g079200 60.072 278 95 7 1 276 1 264 4.15e-98 288
MS.gene07577.t1 MTR_1g079260 54.286 280 116 5 1 276 1 272 4.60e-95 281
MS.gene07577.t1 MTR_1g100597 56.140 285 103 7 1 276 1 272 5.84e-93 276
MS.gene07577.t1 MTR_1g026510 53.472 288 117 8 1 276 1 283 3.59e-89 267
MS.gene07577.t1 MTR_1g079350 94.737 133 7 0 1 133 1 133 2.58e-88 262
MS.gene07577.t1 MTR_1g079380 54.874 277 112 6 1 276 1 265 6.48e-87 261
MS.gene07577.t1 MTR_3g452600 54.480 279 100 9 4 276 10 267 1.35e-85 257
MS.gene07577.t1 MTR_1g079250 53.710 283 119 8 1 276 1 278 1.23e-83 253
MS.gene07577.t1 MTR_3g006850 47.588 311 117 6 2 276 15 315 1.55e-81 248
MS.gene07577.t1 MTR_1g079850 51.536 293 113 9 1 276 1 281 1.07e-80 245
MS.gene07577.t1 MTR_1g079230 48.789 289 119 6 1 276 1 273 1.95e-75 231
MS.gene07577.t1 MTR_1g100613 54.065 246 90 6 20 253 5 239 7.25e-75 229
MS.gene07577.t1 MTR_3g450990 48.123 293 113 10 4 276 10 283 2.42e-73 226
MS.gene07577.t1 MTR_2g079100 49.455 275 114 8 3 273 8 261 1.69e-70 218
MS.gene07577.t1 MTR_7g096300 52.075 265 105 9 1 261 1 247 1.28e-64 215
MS.gene07577.t1 MTR_1g079410 44.086 279 141 5 2 276 6 273 1.90e-62 198
MS.gene07577.t1 MTR_1g079140 39.799 299 149 6 4 276 13 306 1.03e-58 189
MS.gene07577.t1 MTR_7g112550 41.197 284 143 12 7 276 10 283 1.60e-49 165
MS.gene07577.t1 MTR_1g079400 37.329 292 144 8 2 276 10 279 1.53e-48 162
MS.gene07577.t1 MTR_1g083580 37.102 283 157 8 5 276 9 281 2.81e-48 162
MS.gene07577.t1 MTR_7g112560 37.184 277 150 8 4 276 1 257 8.80e-48 160
MS.gene07577.t1 MTR_4g023570 35.145 276 137 8 4 276 1 237 6.67e-42 144
MS.gene07577.t1 MTR_1g078470 45.918 196 93 6 81 276 2 184 2.13e-41 141
MS.gene07577.t1 MTR_1g079240 47.059 187 80 5 90 276 12 179 8.22e-41 139
MS.gene07577.t1 MTR_2g042540 60.748 107 39 2 1 106 1 105 3.00e-33 118
MS.gene07577.t1 MTR_1g076870 47.826 138 49 3 133 253 2 133 1.74e-30 111
MS.gene07577.t1 MTR_1g078460 60.000 90 33 1 1 90 64 150 2.39e-25 98.6
MS.gene07577.t1 MTR_1g079130 37.056 197 92 8 104 276 1 189 5.21e-24 96.3
MS.gene07577.t1 MTR_7g096310 52.381 105 44 2 70 172 44 144 1.07e-23 94.7
MS.gene07577.t1 MTR_1g079210 44.000 125 59 2 134 249 7 129 3.18e-23 92.8
MS.gene07577.t1 MTR_3g058640 47.788 113 51 4 128 239 1 106 5.78e-21 85.5
MS.gene07577.t1 MTR_7g103380 24.314 255 162 6 3 245 18 253 1.63e-13 69.7
MS.gene07577.t1 MTR_0113s0040 25.500 200 133 4 2 189 20 215 3.78e-13 68.6
MS.gene07577.t1 MTR_4g102770 25.743 202 135 3 6 195 21 219 4.45e-13 68.2
MS.gene07577.t1 MTR_5g010800 28.155 206 118 9 6 192 19 213 1.77e-12 66.6
MS.gene07577.t1 MTR_1g101390 30.667 150 96 4 2 149 26 169 3.84e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07577.t1 AT1G80110 38.662 269 148 4 7 275 4 255 6.95e-51 168
MS.gene07577.t1 AT2G02360 37.545 277 150 8 2 275 12 268 1.62e-49 165
MS.gene07577.t1 AT2G02250 38.129 278 145 9 4 275 47 303 5.60e-49 164
MS.gene07577.t1 AT2G02240 37.455 275 154 8 2 275 59 316 1.29e-45 156
MS.gene07577.t1 AT2G02340 37.770 278 161 7 1 275 33 301 1.32e-45 155
MS.gene07577.t1 AT1G56240 38.462 286 150 9 7 275 4 280 1.58e-45 155
MS.gene07577.t1 AT2G02230 32.911 316 155 11 4 276 32 333 4.79e-44 152
MS.gene07577.t1 AT1G56250 38.328 287 151 9 7 276 4 281 1.42e-43 150
MS.gene07577.t1 AT1G09155 35.315 286 161 9 7 276 3 280 1.35e-41 145
MS.gene07577.t1 AT2G02300 34.520 281 147 8 2 276 32 281 5.12e-39 138
MS.gene07577.t1 AT2G02350 32.852 277 167 7 2 275 22 282 1.70e-37 134
MS.gene07577.t1 AT2G02310 31.655 278 171 7 2 276 43 304 4.26e-37 134
MS.gene07577.t1 AT2G02320 33.942 274 160 8 6 275 42 298 7.23e-37 133
MS.gene07577.t1 AT5G24560 43.333 150 69 6 4 149 3 140 3.81e-29 109
MS.gene07577.t1 AT3G53000 25.524 286 179 8 3 275 20 284 1.30e-15 75.5
MS.gene07577.t1 AT1G63090 25.238 210 138 5 3 199 25 228 2.40e-14 72.0
MS.gene07577.t1 AT3G61060 24.479 192 130 3 6 185 27 215 6.86e-14 70.5
MS.gene07577.t1 AT1G12710 26.442 208 132 6 6 199 30 230 8.24e-14 70.5
MS.gene07577.t1 AT3G61060 25.521 192 127 4 6 185 27 214 2.79e-13 68.9
MS.gene07577.t1 AT2G02350 29.143 175 111 6 104 275 1 165 8.50e-13 65.9

Find 65 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCCAATTCCGACGAAGTA+TGG 0.211519 1.2:+62064217 MS.gene07577:CDS
TACGCCACATACTGAGTATT+TGG 0.214019 1.2:-62065834 None:intergenic
TTTGGATTTCTTCATATTCT+AGG 0.214179 1.2:-62066091 None:intergenic
CATTGGCAAGGGAAGGAAAT+TGG 0.240771 1.2:-62064287 None:intergenic
ATTCCATACTTCGTCGGAAT+TGG 0.295629 1.2:-62064220 None:intergenic
TTCAAGATGGCTGATGTCTT+TGG 0.297218 1.2:+62065864 MS.gene07577:CDS
ATTGGGGAGTTCTTCAATTT+AGG 0.298698 1.2:+62066068 MS.gene07577:CDS
TCTCGACATTAACATTCATT+TGG 0.342853 1.2:-62066109 None:intergenic
TGATTCCCATGCATCATTCC+AGG 0.367183 1.2:+62064564 MS.gene07577:CDS
GAATGTTAATGTCGAGATAA+AGG 0.367552 1.2:+62066115 MS.gene07577:CDS
GGCGGCAGAACGGAAGGTTT+TGG 0.368079 1.2:-62064199 None:intergenic
CAAAAGAATGGCGGCGTTTG+AGG 0.380046 1.2:+62064101 None:intergenic
ACGCCACATACTGAGTATTT+GGG 0.381358 1.2:-62065833 None:intergenic
TCATCAAGCTCAGCAACTTC+AGG 0.390519 1.2:-62065762 None:intergenic
AGATGACAGTGTCGATGAAT+TGG 0.394916 1.2:-62064263 None:intergenic
CTGAGCTTGATGATGTTTGT+GGG 0.398290 1.2:+62065772 MS.gene07577:CDS
TAGTTGATGGAATAGAAGTT+AGG 0.404080 1.2:+62066162 MS.gene07577:CDS
TGAAATGTAGAGCTTTCAAT+TGG 0.411607 1.2:+62064451 MS.gene07577:intron
GGTGGTTTGAGATTGAGATT+GGG 0.419831 1.2:+62066051 MS.gene07577:CDS
GGGTGGTTTGAGATTGAGAT+TGG 0.426113 1.2:+62066050 MS.gene07577:CDS
CCATACTTCGTCGGAATTGG+CGG 0.433366 1.2:-62064217 None:intergenic
ATTGGCAAGGGAAGGAAATT+GGG 0.445945 1.2:-62064286 None:intergenic
AGATCTCTCACATTTGATGA+TGG 0.452005 1.2:+62064512 MS.gene07577:CDS
GCTGAGCTTGATGATGTTTG+TGG 0.455966 1.2:+62065771 MS.gene07577:CDS
GATGACAGTGTCGATGAATT+GGG 0.463732 1.2:-62064262 None:intergenic
TGTATCCAAATGTAGAAAGT+AGG 0.464992 1.2:+62065964 MS.gene07577:CDS
GTTGCTTAATTATCTTACTT+AGG 0.474152 1.2:-62066185 None:intergenic
GGCGGCGTTTGAGGAATTGC+CGG 0.482289 1.2:+62064110 MS.gene07577:CDS
GTATCCAAATGTAGAAAGTA+GGG 0.487141 1.2:+62065965 MS.gene07577:CDS
GTTTGTGGGATTGACATTTG+TGG 0.490073 1.2:+62065786 MS.gene07577:CDS
GTAGCATTATTATGATAATG+AGG 0.491702 1.2:-62065930 None:intergenic
ATAGCGGCAACACATTCTTC+CGG 0.493919 1.2:-62064129 None:intergenic
ATCAAAATATGTTTCCATTG+AGG 0.513426 1.2:-62064545 None:intergenic
GAGAGTCTGACGGCGTCAAA+CGG 0.520309 1.2:-62064168 None:intergenic
TTGTCTAGAGCGAGAAGCGA+TGG 0.524530 1.2:+62066029 MS.gene07577:CDS
GTTAATGTCGAGATAAAGGA+TGG 0.526633 1.2:+62066119 MS.gene07577:CDS
GACGATCTTCAGTGATGATA+CGG 0.526769 1.2:-62064350 None:intergenic
GGGCACAAGAACAGTGAAGT+AGG 0.547355 1.2:+62065987 MS.gene07577:CDS
GTGGAAGCATTGGCAAGGGA+AGG 0.550597 1.2:-62064294 None:intergenic
AGCAAACCTGGAATGATGCA+TGG 0.553504 1.2:-62064570 None:intergenic
AGTGTCGATGAATTGGGAAT+CGG 0.553699 1.2:-62064256 None:intergenic
GTGGTTTGAGATTGAGATTG+GGG 0.561075 1.2:+62066052 MS.gene07577:CDS
GTCCCCAAATACTCAGTATG+TGG 0.561633 1.2:+62065830 MS.gene07577:CDS
TTTCAATTGGATAGAAAGAG+TGG 0.567809 1.2:+62064464 MS.gene07577:CDS
GGAATTGGCGGCAGAACGGA+AGG 0.580414 1.2:-62064205 None:intergenic
ACACGAACTGTGAATTCCAC+AGG 0.583835 1.2:-62065900 None:intergenic
GCAAACCTGGAATGATGCAT+GGG 0.587407 1.2:-62064569 None:intergenic
TGGACTTAATAGAATTCCTG+TGG 0.589791 1.2:+62065884 MS.gene07577:CDS
AAATTGATTCCATACTTCGT+CGG 0.591438 1.2:-62064226 None:intergenic
AGTATTTGGGGACAAGGCAA+TGG 0.593174 1.2:-62065820 None:intergenic
CGTCGGAATTGGCGGCAGAA+CGG 0.600254 1.2:-62064209 None:intergenic
TGTGGAATTCACAGTTCGTG+TGG 0.604190 1.2:+62065902 MS.gene07577:CDS
CGATGAATTGGGAATCGGAA+GGG 0.622940 1.2:-62064251 None:intergenic
CGCCACATACTGAGTATTTG+GGG 0.628472 1.2:-62065832 None:intergenic
TGTCTAGAGCGAGAAGCGAT+GGG 0.636331 1.2:+62066030 MS.gene07577:CDS
TATCCAAATGTAGAAAGTAG+GGG 0.637003 1.2:+62065966 MS.gene07577:CDS
CATCACTGAAGATCGTCGAA+AGG 0.642352 1.2:+62064356 MS.gene07577:CDS
ATACTGAGTATTTGGGGACA+AGG 0.645914 1.2:-62065826 None:intergenic
ATCCAAATGTAGAAAGTAGG+GGG 0.657805 1.2:+62065967 MS.gene07577:CDS
GGCGTATCTTGTGTTCAAGA+TGG 0.658111 1.2:+62065851 MS.gene07577:CDS
TCGATGAATTGGGAATCGGA+AGG 0.660363 1.2:-62064252 None:intergenic
CTAGAGCGAGAAGCGATGGG+TGG 0.660567 1.2:+62066033 MS.gene07577:CDS
GGAAACGAGAGAGAGTCTGA+CGG 0.685849 1.2:-62064178 None:intergenic
TCTGACGGCGTCAAACGGAG+TGG 0.714597 1.2:-62064163 None:intergenic
AGTGGTACGAGAGAGTATAG+CGG 0.806673 1.2:-62064145 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGTTATATATGCTATTAT+AGG - chr1.2:62065532-62065551 None:intergenic 15.0%
!! TTGAATATAATTATATGTGT+CGG - chr1.2:62064720-62064739 None:intergenic 15.0%
!!! AATTTAATGATGTTTTCTTT+CGG + chr1.2:62065298-62065317 MS.gene07577:intron 15.0%
!! AATAGACTAATATATAGATG+AGG - chr1.2:62065156-62065175 None:intergenic 20.0%
!! ACTAGTAGAATACAATTATA+TGG + chr1.2:62065062-62065081 MS.gene07577:intron 20.0%
!! ATAATGAGAAAATGATAGTT+TGG - chr1.2:62064876-62064895 None:intergenic 20.0%
!! TAATGAGAAAATGATAGTTT+GGG - chr1.2:62064875-62064894 None:intergenic 20.0%
!! TCCTTGTAAAAAAAAAACAT+GGG - chr1.2:62064825-62064844 None:intergenic 20.0%
!! TTCCTTGTAAAAAAAAAACA+TGG - chr1.2:62064826-62064845 None:intergenic 20.0%
!!! TTATTTGAAACTAAACTATG+CGG - chr1.2:62064964-62064983 None:intergenic 20.0%
!!! TTTTAAGAAGTAAAACGTTT+TGG - chr1.2:62065030-62065049 None:intergenic 20.0%
! AAAGATTATAATGTAGGAAC+TGG - chr1.2:62065711-62065730 None:intergenic 25.0%
! AAGATTATAATGTAGGAACT+GGG - chr1.2:62065710-62065729 None:intergenic 25.0%
! AATTGAGGTATGTAGAAAAA+TGG + chr1.2:62065468-62065487 MS.gene07577:intron 25.0%
! AGATGCAAAGATTATAATGT+AGG - chr1.2:62065717-62065736 None:intergenic 25.0%
! AGTTCATTGTATACTAATAG+TGG + chr1.2:62064420-62064439 MS.gene07577:intron 25.0%
! ATAAAGTTTGACAATGTACT+CGG + chr1.2:62064980-62064999 MS.gene07577:intron 25.0%
! ATCAAAATATGTTTCCATTG+AGG - chr1.2:62064548-62064567 None:intergenic 25.0%
! CAGGTTCATTAACTAAAAAT+TGG - chr1.2:62065621-62065640 None:intergenic 25.0%
! GACAAATGAAGAATCTATAT+AGG - chr1.2:62065664-62065683 None:intergenic 25.0%
! GTAAGATAAATTAACAGTAC+AGG - chr1.2:62065640-62065659 None:intergenic 25.0%
! GTTCATTAACTAAAAATTGG+AGG - chr1.2:62065618-62065637 None:intergenic 25.0%
! TGAAATACTTCAGTTATTCT+TGG + chr1.2:62065586-62065605 MS.gene07577:intron 25.0%
! TTCCAATTTCTCCAATATTA+GGG + chr1.2:62064387-62064406 MS.gene07577:intron 25.0%
! TTTGGATTTCTTCATATTCT+AGG - chr1.2:62066094-62066113 None:intergenic 25.0%
!! GTAGCATTATTATGATAATG+AGG - chr1.2:62065933-62065952 None:intergenic 25.0%
!!! ACCCATGTTTTTTTTTTACA+AGG + chr1.2:62064821-62064840 MS.gene07577:intron 25.0%
AAATGGATGTCCTTTAAGTA+AGG + chr1.2:62065485-62065504 MS.gene07577:intron 30.0%
AACCCTAATATTGGAGAAAT+TGG - chr1.2:62064392-62064411 None:intergenic 30.0%
AATGGATGTCCTTTAAGTAA+GGG + chr1.2:62065486-62065505 MS.gene07577:intron 30.0%
ACACTTATCATGAGAAATTG+AGG + chr1.2:62065453-62065472 MS.gene07577:intron 30.0%
ACTTGAGTATAATGTGAACA+TGG - chr1.2:62064908-62064927 None:intergenic 30.0%
ATAATGTGAACATGGTAACA+TGG - chr1.2:62064900-62064919 None:intergenic 30.0%
ATGATAGTTTGGGTGAATAA+TGG - chr1.2:62064865-62064884 None:intergenic 30.0%
CTTCCAATTTCTCCAATATT+AGG + chr1.2:62064386-62064405 MS.gene07577:intron 30.0%
GAATGTTAATGTCGAGATAA+AGG + chr1.2:62066115-62066134 MS.gene07577:CDS 30.0%
GTATCCAAATGTAGAAAGTA+GGG + chr1.2:62065965-62065984 MS.gene07577:CDS 30.0%
GTTATGCTGTTAACAAAATG+AGG + chr1.2:62065106-62065125 MS.gene07577:intron 30.0%
TATCCAAATGTAGAAAGTAG+GGG + chr1.2:62065966-62065985 MS.gene07577:CDS 30.0%
TCAACGATAAACCCTAATAT+TGG - chr1.2:62064401-62064420 None:intergenic 30.0%
TCAATTTCTCATGATAAGTG+TGG - chr1.2:62065454-62065473 None:intergenic 30.0%
TCTCGACATTAACATTCATT+TGG - chr1.2:62066112-62066131 None:intergenic 30.0%
TGAAATGTAGAGCTTTCAAT+TGG + chr1.2:62064451-62064470 MS.gene07577:intron 30.0%
TGTATCCAAATGTAGAAAGT+AGG + chr1.2:62065964-62065983 MS.gene07577:CDS 30.0%
TTGTGACAAAATAATAGCCT+AGG - chr1.2:62065405-62065424 None:intergenic 30.0%
TTTCAATTGGATAGAAAGAG+TGG + chr1.2:62064464-62064483 MS.gene07577:CDS 30.0%
! AAATTGATTCCATACTTCGT+CGG - chr1.2:62064229-62064248 None:intergenic 30.0%
! CATTTTGTTAACAGCATAAC+TGG - chr1.2:62065106-62065125 None:intergenic 30.0%
!! AACACATGTCTTTTAGTTGA+TGG + chr1.2:62066149-62066168 MS.gene07577:CDS 30.0%
!! TAGTTGATGGAATAGAAGTT+AGG + chr1.2:62066162-62066181 MS.gene07577:CDS 30.0%
!! TTTTCGTACTACTTTTGGAT+AGG + chr1.2:62065736-62065755 MS.gene07577:intron 30.0%
!!! ATGGTTTTTTATTGCCTCAA+TGG + chr1.2:62064531-62064550 MS.gene07577:CDS 30.0%
!!! TTCGGATTTTATTTTTGCCA+TGG + chr1.2:62065316-62065335 MS.gene07577:intron 30.0%
ACATGATACCAATCAAACAC+CGG - chr1.2:62064691-62064710 None:intergenic 35.0%
AGAAAAGTTAAGAGCAAACC+TGG - chr1.2:62064585-62064604 None:intergenic 35.0%
AGATCTCTCACATTTGATGA+TGG + chr1.2:62064512-62064531 MS.gene07577:CDS 35.0%
ATCCAAATGTAGAAAGTAGG+GGG + chr1.2:62065967-62065986 MS.gene07577:CDS 35.0%
ATTGGGGAGTTCTTCAATTT+AGG + chr1.2:62066068-62066087 MS.gene07577:CDS 35.0%
GTGCTTCATAGCTACTTATT+GGG - chr1.2:62064642-62064661 None:intergenic 35.0%
GTTAATGTCGAGATAAAGGA+TGG + chr1.2:62066119-62066138 MS.gene07577:CDS 35.0%
TAACCTTCTCCCTTACTTAA+AGG - chr1.2:62065498-62065517 None:intergenic 35.0%
TAATAGCCTAGGTAATTCAC+TGG - chr1.2:62065394-62065413 None:intergenic 35.0%
TGGACTTAATAGAATTCCTG+TGG + chr1.2:62065884-62065903 MS.gene07577:CDS 35.0%
TTGAAACTAAACTATGCGGA+AGG - chr1.2:62064960-62064979 None:intergenic 35.0%
! ACGTCTGACAGTAGAATTTT+TGG - chr1.2:62065346-62065365 None:intergenic 35.0%
! GCATCTTTTCGTACTACTTT+TGG + chr1.2:62065731-62065750 MS.gene07577:intron 35.0%
!!! ATCCTTTTTTGTGGAAGCAT+TGG - chr1.2:62064307-62064326 None:intergenic 35.0%
!!! GAGATAGAGATCCTTTTTTG+TGG - chr1.2:62064316-62064335 None:intergenic 35.0%
!!! GTAGAATTTTTGGCATTCCA+TGG - chr1.2:62065336-62065355 None:intergenic 35.0%
AAGCACCTATACTCGGATTA+GGG + chr1.2:62064656-62064675 MS.gene07577:intron 40.0%
ACGCCACATACTGAGTATTT+GGG - chr1.2:62065836-62065855 None:intergenic 40.0%
AGCTAACTAGGTTACATGTG+TGG + chr1.2:62065247-62065266 MS.gene07577:intron 40.0%
ATACTGAGTATTTGGGGACA+AGG - chr1.2:62065829-62065848 None:intergenic 40.0%
ATTCCATACTTCGTCGGAAT+TGG - chr1.2:62064223-62064242 None:intergenic 40.0%
ATTGGCAAGGGAAGGAAATT+GGG - chr1.2:62064289-62064308 None:intergenic 40.0%
CGGAAGGAATGTTTGACTAT+GGG - chr1.2:62064944-62064963 None:intergenic 40.0%
CTTCATAGCTACTTATTGGG+TGG - chr1.2:62064639-62064658 None:intergenic 40.0%
GAAGGAATGTTTGACTATGG+GGG - chr1.2:62064942-62064961 None:intergenic 40.0%
GACGATCTTCAGTGATGATA+CGG - chr1.2:62064353-62064372 None:intergenic 40.0%
GGAAGGAATGTTTGACTATG+GGG - chr1.2:62064943-62064962 None:intergenic 40.0%
GGTGCTTCATAGCTACTTAT+TGG - chr1.2:62064643-62064662 None:intergenic 40.0%
GTTAACAGCATAACTGGTGT+AGG - chr1.2:62065100-62065119 None:intergenic 40.0%
GTTTGTGGGATTGACATTTG+TGG + chr1.2:62065786-62065805 MS.gene07577:CDS 40.0%
TACGCCACATACTGAGTATT+TGG - chr1.2:62065837-62065856 None:intergenic 40.0%
TGCCAATGCTTCCACAAAAA+AGG + chr1.2:62064302-62064321 MS.gene07577:CDS 40.0%
TGTCCTTTAAGTAAGGGAGA+AGG + chr1.2:62065492-62065511 MS.gene07577:intron 40.0%
TGTTGACACGTCTGTATTTG+AGG + chr1.2:62064769-62064788 MS.gene07577:intron 40.0%
TTCAAGATGGCTGATGTCTT+TGG + chr1.2:62065864-62065883 MS.gene07577:CDS 40.0%
! AACCTAGTTAGCTTCTACAC+AGG - chr1.2:62065240-62065259 None:intergenic 40.0%
! AGATATTTGAAATGCACCCC+CGG + chr1.2:62065184-62065203 MS.gene07577:intron 40.0%
! AGCTATGAAGCACCTATACT+CGG + chr1.2:62064649-62064668 MS.gene07577:intron 40.0%
! GGTGGTTTGAGATTGAGATT+GGG + chr1.2:62066051-62066070 MS.gene07577:CDS 40.0%
! GTGGTTTGAGATTGAGATTG+GGG + chr1.2:62066052-62066071 MS.gene07577:CDS 40.0%
!! AGATGACAGTGTCGATGAAT+TGG - chr1.2:62064266-62064285 None:intergenic 40.0%
!! AGTGTCGATGAATTGGGAAT+CGG - chr1.2:62064259-62064278 None:intergenic 40.0%
!! CTGAGCTTGATGATGTTTGT+GGG + chr1.2:62065772-62065791 MS.gene07577:CDS 40.0%
!! GATGACAGTGTCGATGAATT+GGG - chr1.2:62064265-62064284 None:intergenic 40.0%
!!! TTTTGTGGAAGCATTGGCAA+GGG - chr1.2:62064301-62064320 None:intergenic 40.0%
!!! TTTTTGTGGAAGCATTGGCA+AGG - chr1.2:62064302-62064321 None:intergenic 40.0%
AAAGATGAAGTCACCCTAGC+CGG - chr1.2:62065206-62065225 None:intergenic 45.0%
ACACGAACTGTGAATTCCAC+AGG - chr1.2:62065903-62065922 None:intergenic 45.0%
AGCAAACCTGGAATGATGCA+TGG - chr1.2:62064573-62064592 None:intergenic 45.0%
AGTATTTGGGGACAAGGCAA+TGG - chr1.2:62065823-62065842 None:intergenic 45.0%
ATAGCGGCAACACATTCTTC+CGG - chr1.2:62064132-62064151 None:intergenic 45.0%
CATCACTGAAGATCGTCGAA+AGG + chr1.2:62064356-62064375 MS.gene07577:CDS 45.0%
CATTGGCAAGGGAAGGAAAT+TGG - chr1.2:62064290-62064309 None:intergenic 45.0%
CGATGAATTGGGAATCGGAA+GGG - chr1.2:62064254-62064273 None:intergenic 45.0%
CGCCACATACTGAGTATTTG+GGG - chr1.2:62065835-62065854 None:intergenic 45.0%
GCAAACCTGGAATGATGCAT+GGG - chr1.2:62064572-62064591 None:intergenic 45.0%
GCGGAAGGAATGTTTGACTA+TGG - chr1.2:62064945-62064964 None:intergenic 45.0%
GGCGTATCTTGTGTTCAAGA+TGG + chr1.2:62065851-62065870 MS.gene07577:CDS 45.0%
GTCCCCAAATACTCAGTATG+TGG + chr1.2:62065830-62065849 MS.gene07577:CDS 45.0%
TCATCAAGCTCAGCAACTTC+AGG - chr1.2:62065765-62065784 None:intergenic 45.0%
TCGATGAATTGGGAATCGGA+AGG - chr1.2:62064255-62064274 None:intergenic 45.0%
TGATTCCCATGCATCATTCC+AGG + chr1.2:62064564-62064583 MS.gene07577:CDS 45.0%
TGCCCCCTACTTTCTACATT+TGG - chr1.2:62065972-62065991 None:intergenic 45.0%
TGCCTGTGTAGAAGCTAACT+AGG + chr1.2:62065235-62065254 MS.gene07577:intron 45.0%
TGTGGAATTCACAGTTCGTG+TGG + chr1.2:62065902-62065921 MS.gene07577:CDS 45.0%
! AGTGGTACGAGAGAGTATAG+CGG - chr1.2:62064148-62064167 None:intergenic 45.0%
! GAAGCACCTATACTCGGATT+AGG + chr1.2:62064655-62064674 MS.gene07577:intron 45.0%
! GGGTGGTTTGAGATTGAGAT+TGG + chr1.2:62066050-62066069 MS.gene07577:CDS 45.0%
!! GCTGAGCTTGATGATGTTTG+TGG + chr1.2:62065771-62065790 MS.gene07577:CDS 45.0%
AAGATGAAGTCACCCTAGCC+GGG - chr1.2:62065205-62065224 None:intergenic 50.0%
ATTTGTCAAAGCAGCAGCCG+TGG + chr1.2:62065368-62065387 MS.gene07577:intron 50.0%
CCATACTTCGTCGGAATTGG+CGG - chr1.2:62064220-62064239 None:intergenic 50.0%
CCTAGGTAATTCACTGGCCA+CGG - chr1.2:62065388-62065407 None:intergenic 50.0%
GGAAACGAGAGAGAGTCTGA+CGG - chr1.2:62064181-62064200 None:intergenic 50.0%
GGGCACAAGAACAGTGAAGT+AGG + chr1.2:62065987-62066006 MS.gene07577:CDS 50.0%
! TGTCTAGAGCGAGAAGCGAT+GGG + chr1.2:62066030-62066049 MS.gene07577:CDS 50.0%
! TTGTCTAGAGCGAGAAGCGA+TGG + chr1.2:62066029-62066048 MS.gene07577:CDS 50.0%
ACGCGCCCTAATCCGAGTAT+AGG - chr1.2:62064664-62064683 None:intergenic 55.0%
AGATGAAGTCACCCTAGCCG+GGG - chr1.2:62065204-62065223 None:intergenic 55.0%
CCGCCAATTCCGACGAAGTA+TGG + chr1.2:62064217-62064236 MS.gene07577:CDS 55.0%
CCGTGGCCAGTGAATTACCT+AGG + chr1.2:62065385-62065404 MS.gene07577:intron 55.0%
GAGAGTCTGACGGCGTCAAA+CGG - chr1.2:62064171-62064190 None:intergenic 55.0%
GCGTGTCTCCGGTGTTTGAT+TGG + chr1.2:62064680-62064699 MS.gene07577:intron 55.0%
TTGAAATGCACCCCCGGCTA+GGG + chr1.2:62065190-62065209 MS.gene07577:intron 55.0%
! TTTGAAATGCACCCCCGGCT+AGG + chr1.2:62065189-62065208 MS.gene07577:intron 55.0%
!! GTGGAAGCATTGGCAAGGGA+AGG - chr1.2:62064297-62064316 None:intergenic 55.0%
CGTCGGAATTGGCGGCAGAA+CGG - chr1.2:62064212-62064231 None:intergenic 60.0%
CTAGAGCGAGAAGCGATGGG+TGG + chr1.2:62066033-62066052 MS.gene07577:CDS 60.0%
GATGAAGTCACCCTAGCCGG+GGG - chr1.2:62065203-62065222 None:intergenic 60.0%
GGAATTGGCGGCAGAACGGA+AGG - chr1.2:62064208-62064227 None:intergenic 60.0%
GGCGGCGTTTGAGGAATTGC+CGG + chr1.2:62064110-62064129 MS.gene07577:CDS 60.0%
TCTGACGGCGTCAAACGGAG+TGG - chr1.2:62064166-62064185 None:intergenic 60.0%
! GGCGGCAGAACGGAAGGTTT+TGG - chr1.2:62064202-62064221 None:intergenic 60.0%
! CGGATTAGGGCGCGTGTCTC+CGG + chr1.2:62064669-62064688 MS.gene07577:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 62064108 62066193 62064108 ID=MS.gene07577
chr1.2 mRNA 62064108 62066193 62064108 ID=MS.gene07577.t1;Parent=MS.gene07577
chr1.2 exon 62064108 62064377 62064108 ID=MS.gene07577.t1.exon1;Parent=MS.gene07577.t1
chr1.2 CDS 62064108 62064377 62064108 ID=cds.MS.gene07577.t1;Parent=MS.gene07577.t1
chr1.2 exon 62064461 62064585 62064461 ID=MS.gene07577.t1.exon2;Parent=MS.gene07577.t1
chr1.2 CDS 62064461 62064585 62064461 ID=cds.MS.gene07577.t1;Parent=MS.gene07577.t1
chr1.2 exon 62065758 62066193 62065758 ID=MS.gene07577.t1.exon3;Parent=MS.gene07577.t1
chr1.2 CDS 62065758 62066193 62065758 ID=cds.MS.gene07577.t1;Parent=MS.gene07577.t1
Gene Sequence

>MS.gene07577

ATGGCGGCGTTTGAGGAATTGCCGGAAGAATGTGTTGCCGCTATACTCTCTCGTACCACTCCGTTTGACGCCGTCAGACTCTCTCTCGTTTCCAAAACCTTCCGTTCTGCCGCCAATTCCGACGAAGTATGGAATCAATTTCTCCCTTCCGATTCCCAATTCATCGACACTGTCATCTCCCAATTTCCTTCCCTTGCCAATGCTTCCACAAAAAAGGATCTCTATCTCGCTCTTTCTGATTGCCGTATCATCACTGAAGATCGTCGAAAGGTATTCTTCTTCCAATTTCTCCAATATTAGGGTTTATCGTTGAGTTCATTGTATACTAATAGTGGATACATGTTGAAATGTAGAGCTTTCAATTGGATAGAAAGAGTGGAAAAAATTGTTACATGATTGCTGCTAGATCTCTCACATTTGATGATGGTTTTTTATTGCCTCAATGGAAACATATTTTGATTCCCATGCATCATTCCAGGTTTGCTCTTAACTTTTCTATCTGTTTTGTTTTATTATTTTCTTATATTACCACCCAATAAGTAGCTATGAAGCACCTATACTCGGATTAGGGCGCGTGTCTCCGGTGTTTGATTGGTATCATGTCTGACACCGACACATATAATTATATTCAATTATATCATTTTTCTTAAATTATTATTAATGTTGACACGTCTGTATTTGAGGTTTTGCTTCATAGATAAGTACTTACTAGTACCCATGTTTTTTTTTTACAAGGAAATTGAATTTCATGTTACCATTATTCACCCAAACTATCATTTTCTCATTATTCCATGTTACCATGTTCACATTATACTCAAGTTGTATTGAATTCCCCCATAGTCAAACATTCCTTCCGCATAGTTTAGTTTCAAATAAAGTTTGACAATGTACTCGGTAAACTCGAGTTGACTACTTGTTTCCAAAACGTTTTACTTCTTAAAAAAAAATTGTGTGACTAGTAGAATACAATTATATGGAATATTTCTAGACCTACACCAGTTATGCTGTTAACAAAATGAGGCAGCATTTGTCTTTGCATTGAACTCCTCATCTATATATTAGTCTATTATCTGCTCAGATATTTGAAATGCACCCCCGGCTAGGGTGACTTCATCTTTACATTTGCATGCCTGTGTAGAAGCTAACTAGGTTACATGTGTGGAAACTGTACACACATTGAAGATGCACTAAATTTAATGATGTTTTCTTTCGGATTTTATTTTTGCCATGGAATGCCAAAAATTCTACTGTCAGACGTTCATTTGTCAAAGCAGCAGCCGTGGCCAGTGAATTACCTAGGCTATTATTTTGTCACAATCAGCACTTGTCTATGTTGCTTATATCCACACTTATCATGAGAAATTGAGGTATGTAGAAAAATGGATGTCCTTTAAGTAAGGGAGAAGGTTAATGCTAGATTTCCTATAATAGCATATATAACTTACTAACTGAGATGTCTGTCATAATCAGTTTCAACTTGAAATACTTCAGTTATTCTTGGCAACAGCCTCCAATTTTTAGTTAATGAACCTGTACTGTTAATTTATCTTACACCTATATAGATTCTTCATTTGTCAGTGAACTACTTTCAACTTTTCTCCCAGTTCCTACATTATAATCTTTGCATCTTTTCGTACTACTTTTGGATAGGTTTCCTGAAGTTGCTGAGCTTGATGATGTTTGTGGGATTGACATTTGTGGTATGATAAACACCATTGCCTTGTCCCCAAATACTCAGTATGTGGCGTATCTTGTGTTCAAGATGGCTGATGTCTTTGGACTTAATAGAATTCCTGTGGAATTCACAGTTCGTGTGGAAAATCCTCATTATCATAATAATGCTACAATTGTCTGTTTGTATCCAAATGTAGAAAGTAGGGGGCACAAGAACAGTGAAGTAGGATTGCAACTAGTAGAAGTGTTGTCTAGAGCGAGAAGCGATGGGTGGTTTGAGATTGAGATTGGGGAGTTCTTCAATTTAGGCCTAGAATATGAAGAAATCCAAATGAATGTTAATGTCGAGATAAAGGATGGTTTTCTGAACACATGTCTTTTAGTTGATGGAATAGAAGTTAGGCCTAAGTAA
Protein sequence

>MS.gene07577.t1

MAAFEELPEECVAAILSRTTPFDAVRLSLVSKTFRSAANSDEVWNQFLPSDSQFIDTVISQFPSLANASTKKDLYLALSDCRIITEDRRKSFQLDRKSGKNCYMIAARSLTFDDGFLLPQWKHILIPMHHSRFPEVAELDDVCGIDICGMINTIALSPNTQYVAYLVFKMADVFGLNRIPVEFTVRVENPHYHNNATIVCLYPNVESRGHKNSEVGLQLVEVLSRARSDGWFEIEIGEFFNLGLEYEEIQMNVNVEIKDGFLNTCLLVDGIEVRPK