AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74998

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74998.t1 MTR_1g079850 66.899 287 92 2 1 287 1 284 3.88e-132 376
MS.gene74998.t1 MTR_1g079180 66.551 287 71 6 1 284 1 265 3.88e-127 362
MS.gene74998.t1 MTR_1g100597 64.460 287 90 5 1 287 1 275 7.35e-122 350
MS.gene74998.t1 MTR_1g079200 62.587 286 83 4 1 284 1 264 2.64e-117 338
MS.gene74998.t1 MTR_1g079370 62.324 284 88 4 1 284 1 265 8.52e-117 336
MS.gene74998.t1 MTR_1g079380 62.676 284 87 3 1 284 1 265 7.05e-116 335
MS.gene74998.t1 MTR_1g079460 61.672 287 92 4 1 287 1 269 1.04e-114 331
MS.gene74998.t1 MTR_1g079250 62.887 291 94 7 1 287 1 281 2.12e-113 329
MS.gene74998.t1 MTR_1g079230 59.450 291 99 6 1 287 1 276 2.69e-111 323
MS.gene74998.t1 MTR_1g079260 59.028 288 104 6 1 287 1 275 1.89e-108 315
MS.gene74998.t1 MTR_1g026510 56.229 297 109 9 1 287 1 286 2.44e-104 306
MS.gene74998.t1 MTR_1g100613 65.587 247 77 5 20 266 5 243 5.13e-103 301
MS.gene74998.t1 MTR_3g006850 55.375 307 109 6 4 287 17 318 1.51e-100 297
MS.gene74998.t1 MTR_3g452600 56.140 285 100 5 4 287 10 270 4.70e-98 289
MS.gene74998.t1 MTR_2g079100 56.318 277 92 5 7 281 12 261 1.64e-92 275
MS.gene74998.t1 MTR_1g079350 53.425 292 111 8 1 284 1 275 2.76e-88 264
MS.gene74998.t1 MTR_3g450990 50.831 301 107 6 4 287 10 286 5.04e-87 261
MS.gene74998.t1 MTR_1g079410 48.443 289 124 6 2 285 6 274 6.81e-82 248
MS.gene74998.t1 MTR_1g079340 51.689 296 121 7 1 284 40 325 3.06e-80 246
MS.gene74998.t1 MTR_7g096300 52.788 269 95 6 1 264 1 242 6.28e-77 248
MS.gene74998.t1 MTR_1g079140 43.377 302 150 6 3 287 12 309 6.29e-71 221
MS.gene74998.t1 MTR_1g078470 59.204 201 54 6 89 284 7 184 3.60e-69 213
MS.gene74998.t1 MTR_7g112550 43.793 290 145 10 2 284 5 283 4.59e-65 205
MS.gene74998.t1 MTR_1g079400 41.901 284 140 5 7 284 15 279 4.61e-60 192
MS.gene74998.t1 MTR_1g083580 38.194 288 161 9 2 284 6 281 3.75e-56 182
MS.gene74998.t1 MTR_1g079240 54.315 197 58 6 91 284 12 179 4.99e-55 176
MS.gene74998.t1 MTR_2g042540 68.103 116 34 2 1 116 1 113 1.17e-45 150
MS.gene74998.t1 MTR_1g076870 56.618 136 53 2 133 264 2 135 1.68e-44 148
MS.gene74998.t1 MTR_7g112560 35.943 281 150 10 7 284 4 257 5.17e-44 150
MS.gene74998.t1 MTR_1g079350 50.588 170 72 4 1 164 1 164 5.98e-42 144
MS.gene74998.t1 MTR_1g079210 56.349 126 51 2 134 258 7 129 5.84e-38 131
MS.gene74998.t1 MTR_1g079130 42.487 193 94 5 105 284 1 189 3.09e-37 131
MS.gene74998.t1 MTR_4g023570 32.734 278 143 6 7 284 4 237 1.73e-36 130
MS.gene74998.t1 MTR_7g096310 47.561 164 65 5 38 187 3 159 2.63e-32 117
MS.gene74998.t1 MTR_3g058640 50.000 116 42 1 133 248 7 106 1.30e-29 108
MS.gene74998.t1 MTR_1g078460 61.702 94 32 2 1 94 64 153 4.40e-27 103
MS.gene74998.t1 MTR_1g079220 59.259 81 17 1 170 250 1 65 2.62e-24 94.0
MS.gene74998.t1 MTR_7g103380 25.175 286 190 9 7 285 22 290 1.22e-20 89.7
MS.gene74998.t1 MTR_0113s0040 30.588 170 110 5 2 170 20 182 6.34e-19 84.7
MS.gene74998.t1 MTR_0002s0020 29.825 171 105 5 3 166 21 183 6.39e-17 79.3
MS.gene74998.t1 MTR_1g101390 31.373 153 97 4 2 152 26 172 7.31e-17 79.3
MS.gene74998.t1 MTR_5g010800 30.612 147 96 3 6 151 19 160 9.74e-17 78.6
MS.gene74998.t1 MTR_4g102770 30.000 150 96 4 6 152 21 164 2.52e-14 72.0
MS.gene74998.t1 MTR_1g079390 66.000 50 15 2 230 279 8 55 5.31e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74998.t1 AT2G02360 40.283 283 138 7 4 283 14 268 3.99e-61 195
MS.gene74998.t1 AT1G80110 41.429 280 137 8 5 283 2 255 4.53e-60 192
MS.gene74998.t1 AT2G02240 37.234 282 149 7 4 283 61 316 8.09e-55 180
MS.gene74998.t1 AT2G02340 35.254 295 153 9 1 283 33 301 6.73e-52 172
MS.gene74998.t1 AT1G09155 39.789 284 159 8 7 284 3 280 1.65e-51 171
MS.gene74998.t1 AT2G02250 35.816 282 154 8 4 283 47 303 2.32e-51 171
MS.gene74998.t1 AT2G02230 33.229 319 168 9 2 287 30 336 4.89e-51 171
MS.gene74998.t1 AT1G56250 39.236 288 155 8 7 284 4 281 5.28e-49 164
MS.gene74998.t1 AT1G56240 38.732 284 160 7 7 283 4 280 1.21e-48 163
MS.gene74998.t1 AT2G02350 33.684 285 162 6 2 283 22 282 2.61e-46 157
MS.gene74998.t1 AT2G02310 32.632 285 165 6 4 285 45 305 2.53e-43 150
MS.gene74998.t1 AT2G02300 35.374 294 133 12 4 285 34 282 5.16e-42 146
MS.gene74998.t1 AT2G02320 34.507 284 151 8 7 283 43 298 1.43e-41 145
MS.gene74998.t1 AT5G24560 41.722 151 80 3 4 154 3 145 8.08e-33 119
MS.gene74998.t1 AT2G02350 31.319 182 105 4 105 283 1 165 4.38e-21 88.6
MS.gene74998.t1 AT3G53000 32.653 147 92 4 7 152 24 164 8.46e-21 90.5
MS.gene74998.t1 AT1G12710 33.103 145 92 3 7 151 31 170 2.70e-16 77.8
MS.gene74998.t1 AT1G63090 32.121 165 103 5 7 170 29 185 3.68e-16 77.4
MS.gene74998.t1 AT3G61060 28.485 165 110 5 7 170 28 185 1.93e-15 75.1
MS.gene74998.t1 AT5G52120 28.205 156 106 3 1 152 18 171 6.14e-14 70.9
MS.gene74998.t1 AT3G61060 28.313 166 110 6 7 170 28 186 7.17e-14 70.9
MS.gene74998.t1 AT1G12710 31.579 133 86 3 7 139 31 158 3.80e-11 63.2

Find 78 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCATTCTTGATGATAAT+TGG 0.098885 1.4:-64983236 None:intergenic
ACCGAGCAATATTGATTTAA+TGG 0.199236 1.4:-64984167 None:intergenic
AAGTACTAAAACTGTCTTAT+TGG 0.208433 1.4:+64984117 MS.gene74998:CDS
TCTTGGCATTGCTTGGGATA+TGG 0.241695 1.4:+64983415 MS.gene74998:CDS
ATGGGAGAGTTCTTTAATTT+AGG 0.272165 1.4:+64984274 MS.gene74998:CDS
TAAGCCGCATACTGAGTATT+TGG 0.291931 1.4:-64984013 None:intergenic
GGCGGCATAGCTTCCACATT+TGG 0.323609 1.4:-64984142 None:intergenic
CACCATTCTTGATGATAATT+GGG 0.341199 1.4:-64983235 None:intergenic
CTAGATCTCTTGGCATTGCT+TGG 0.349116 1.4:+64983408 MS.gene74998:CDS
TGCCAACACTCCAACCAAAA+AGG 0.355711 1.4:+64983187 MS.gene74998:CDS
GAAACAAGCTCAGCAACTTC+GGG 0.356958 1.4:-64983941 None:intergenic
TGCATAGAAAGAGTGGAAAA+AGG 0.371008 1.4:+64983369 MS.gene74998:CDS
GAGAACCTGCCGGCCACAAC+TGG 0.371880 1.4:-64983050 None:intergenic
GACGATGAAGTCGATGAATT+GGG 0.385801 1.4:-64983144 None:intergenic
GGATTGCTATGCCTGATTCC+AGG 0.390951 1.4:+64983459 MS.gene74998:CDS
TGGAGTCGTATGAGAGAGTA+TGG 0.393657 1.4:-64983030 None:intergenic
ATGGCGGCAACGCACTCTTC+TGG 0.394654 1.4:-64983011 None:intergenic
CCGCTGATTCCGACGCCGTA+TGG 0.412845 1.4:+64983099 MS.gene74998:CDS
AGACGATGAAGTCGATGAAT+TGG 0.414822 1.4:-64983145 None:intergenic
ATGCTTGCTGCTAGATCTCT+TGG 0.415529 1.4:+64983398 MS.gene74998:CDS
ACAATGCACAACAGAGTAGA+AGG 0.419604 1.4:+64984205 MS.gene74998:CDS
ATATGGATGATGATCGCTAT+TGG 0.445967 1.4:+64983432 MS.gene74998:CDS
TTGGGTGGTTACCTGGAATC+AGG 0.447521 1.4:-64983470 None:intergenic
AGAAACAAGCTCAGCAACTT+CGG 0.449217 1.4:-64983942 None:intergenic
TAGATCTCTTGGCATTGCTT+GGG 0.454015 1.4:+64983409 MS.gene74998:CDS
CAATATTGCTCGGTCATGCT+TGG 0.461553 1.4:+64984176 MS.gene74998:CDS
GTAAAACCTGGTCTGCTGTT+GGG 0.464946 1.4:+64984334 MS.gene74998:CDS
GAGGACAGTTCTGAAATCCT+TGG 0.468868 1.4:-64984060 None:intergenic
GTGTGGATGCTTGACATTAG+TGG 0.471464 1.4:+64983965 MS.gene74998:CDS
TATCATCAAGAATGGTGAAA+AGG 0.485783 1.4:+64983241 MS.gene74998:CDS
GTTGGAGTGTTGGCAATGGA+AGG 0.492413 1.4:-64983179 None:intergenic
AGGACAGTTCTGAAATCCTT+GGG 0.493582 1.4:-64984059 None:intergenic
CGACTCCAGTTGTGGCCGGC+AGG 0.494022 1.4:+64983045 MS.gene74998:CDS
AGCAATATTGATTTAATGGT+GGG 0.495478 1.4:-64984163 None:intergenic
CGCCCAATTATCATCAAGAA+TGG 0.495686 1.4:+64983233 MS.gene74998:CDS
AAATTTCCCAACAGCAGACC+AGG 0.503021 1.4:-64984340 None:intergenic
CACCCATCGCTTCTCAAACT+CGG 0.504886 1.4:-64984238 None:intergenic
AGCGGCAGAACGGAATGTCT+TGG 0.509093 1.4:-64983081 None:intergenic
GGTAAAACCTGGTCTGCTGT+TGG 0.521350 1.4:+64984333 MS.gene74998:CDS
TTTGAGAAGCGATGGGTGGT+TGG 0.523663 1.4:+64984243 MS.gene74998:CDS
CGTCCGAGTTTGAGAAGCGA+TGG 0.525014 1.4:+64984235 MS.gene74998:CDS
TGGGTGGTTGGAGATTGAGA+TGG 0.532103 1.4:+64984255 MS.gene74998:CDS
AGGAATAGAAGTTAGACCTA+AGG 0.534122 1.4:+64984372 MS.gene74998:CDS
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 1.4:+64984256 MS.gene74998:CDS
GAGTTATCAGTTGGTGTCAG+AGG 0.545530 1.4:+64984085 MS.gene74998:CDS
ATGATGATCGCTATTGGAAG+TGG 0.550020 1.4:+64983438 MS.gene74998:CDS
CTCTCATACGACTCCAGTTG+TGG 0.553995 1.4:+64983037 MS.gene74998:CDS
AGTCAAGATGAGTGTTACCC+AGG 0.555540 1.4:+64984312 MS.gene74998:CDS
ACCATTAAATCAATATTGCT+CGG 0.556459 1.4:+64984166 MS.gene74998:CDS
ACGATGAAGTCGATGAATTG+GGG 0.559295 1.4:-64983143 None:intergenic
AGGATTTCAGAACTGTCCTC+AGG 0.560242 1.4:+64984063 MS.gene74998:CDS
TTGCTGAGCTTGTTTCTGTG+TGG 0.563125 1.4:+64983948 MS.gene74998:CDS
TTTGGTTGGAGTGTTGGCAA+TGG 0.565580 1.4:-64983183 None:intergenic
TTCAAGATGTTTGATGCCCA+AGG 0.578861 1.4:+64984043 MS.gene74998:CDS
GGAGTGTTGGCAATGGAAGG+AGG 0.579339 1.4:-64983176 None:intergenic
GAGCAATATTGATTTAATGG+TGG 0.581098 1.4:-64984164 None:intergenic
ATTCAATTGCATAGAAAGAG+TGG 0.587159 1.4:+64983362 MS.gene74998:CDS
GGAAACCACGGAGAACCTGC+CGG 0.590975 1.4:-64983060 None:intergenic
CATACGACTCCAGTTGTGGC+CGG 0.600489 1.4:+64983041 MS.gene74998:CDS
GTCCGAGTTTGAGAAGCGAT+GGG 0.601232 1.4:+64984236 MS.gene74998:CDS
TGTCTTATTGGATCCAAATG+TGG 0.605426 1.4:+64984129 MS.gene74998:CDS
GAGTATTTGGAGACAAGACA+CGG 0.607854 1.4:-64984000 None:intergenic
CCATACGGCGTCGGAATCAG+CGG 0.608739 1.4:-64983099 None:intergenic
TGTCCTCAGGAGTTATCAGT+TGG 0.614418 1.4:+64984076 MS.gene74998:CDS
AGTGTTACCCAGGTAAAACC+TGG 0.617166 1.4:+64984322 MS.gene74998:CDS
CGTCGGAATCAGCGGCAGAA+CGG 0.619760 1.4:-64983091 None:intergenic
GTCTCCAAATACTCAGTATG+CGG 0.620795 1.4:+64984009 MS.gene74998:CDS
CGAGTTTGAGAAGCGATGGG+TGG 0.621386 1.4:+64984239 MS.gene74998:CDS
ACGGAGAAAGTGATTCCATA+CGG 0.626762 1.4:-64983114 None:intergenic
AATATTGATTTAATGGTGGG+CGG 0.632455 1.4:-64984160 None:intergenic
TGTGGCCGGCAGGTTCTCCG+TGG 0.648406 1.4:+64983055 MS.gene74998:CDS
AAACAAGCTCAGCAACTTCG+GGG 0.651309 1.4:-64983940 None:intergenic
AAAGTGATTCCATACGGCGT+CGG 0.655224 1.4:-64983108 None:intergenic
CGATGAAGTCGATGAATTGG+GGG 0.663283 1.4:-64983142 None:intergenic
ACGGAATGTCTTGGAAACCA+CGG 0.690249 1.4:-64983072 None:intergenic
AGTATTTGGAGACAAGACAC+GGG 0.691675 1.4:-64983999 None:intergenic
ACACCAACTGATAACTCCTG+AGG 0.713843 1.4:-64984079 None:intergenic
AGTCGTATGAGAGAGTATGG+CGG 0.764815 1.4:-64983027 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGTACTAAAACTGTCTTAT+TGG + chr1.4:64984117-64984136 MS.gene74998:CDS 25.0%
! AAGTCTAGTATTCGAAAAAT+TGG - chr1.4:64983285-64983304 None:intergenic 25.0%
! AATTAAGTCGTCAATTAATG+AGG - chr1.4:64983518-64983537 None:intergenic 25.0%
! ACCATTAAATCAATATTGCT+CGG + chr1.4:64984166-64984185 MS.gene74998:CDS 25.0%
! AGTTGCAAAGATAAGAATAA+AGG - chr1.4:64983903-64983922 None:intergenic 25.0%
! ATACATAGAATTATGAGACA+TGG - chr1.4:64983686-64983705 None:intergenic 25.0%
! CAAGTCATCAGATATATATT+GGG - chr1.4:64983491-64983510 None:intergenic 25.0%
! GTAATTCATAACATCACAAA+TGG - chr1.4:64983860-64983879 None:intergenic 25.0%
! TCAAGTCATCAGATATATAT+TGG - chr1.4:64983492-64983511 None:intergenic 25.0%
!!! AGACAGTTTTAGTACTTTTA+TGG - chr1.4:64984114-64984133 None:intergenic 25.0%
!!! AGCAATATTGATTTAATGGT+GGG - chr1.4:64984166-64984185 None:intergenic 25.0%
!!! TCTTGACTTCTTTATTTTTG+AGG - chr1.4:64984300-64984319 None:intergenic 25.0%
!!! TTGGGAAATTTTTTTCTTGA+AGG + chr1.4:64984352-64984371 MS.gene74998:CDS 25.0%
ATTCAATTGCATAGAAAGAG+TGG + chr1.4:64983362-64983381 MS.gene74998:CDS 30.0%
GATCAATCAATAGTAAGTGT+CGG - chr1.4:64983622-64983641 None:intergenic 30.0%
TATCATCAAGAATGGTGAAA+AGG + chr1.4:64983241-64983260 MS.gene74998:CDS 30.0%
TCTAGTATTCGAAAAATTGG+CGG - chr1.4:64983282-64983301 None:intergenic 30.0%
TGAAACAATTTAGTTACGCT+TGG + chr1.4:64983768-64983787 MS.gene74998:intron 30.0%
! ATGGGAGAGTTCTTTAATTT+AGG + chr1.4:64984274-64984293 MS.gene74998:CDS 30.0%
! CACAAATGGAGTATTTATAC+AGG - chr1.4:64983846-64983865 None:intergenic 30.0%
! CACCATTCTTGATGATAATT+GGG - chr1.4:64983238-64983257 None:intergenic 30.0%
! TCACCATTCTTGATGATAAT+TGG - chr1.4:64983239-64983258 None:intergenic 30.0%
!! AATATTGATTTAATGGTGGG+CGG - chr1.4:64984163-64984182 None:intergenic 30.0%
!! ACCGAGCAATATTGATTTAA+TGG - chr1.4:64984170-64984189 None:intergenic 30.0%
!! AGGTTCAGATTAGGTTTTAT+AGG - chr1.4:64983644-64983663 None:intergenic 30.0%
!! GAGCAATATTGATTTAATGG+TGG - chr1.4:64984167-64984186 None:intergenic 30.0%
!! TATGATGATGAAAAGTGTCT+CGG - chr1.4:64983736-64983755 None:intergenic 30.0%
AATCCCATAAAAACGTTGTG+TGG - chr1.4:64983566-64983585 None:intergenic 35.0%
ACTGCTATGAAGCACATATA+TGG + chr1.4:64983539-64983558 MS.gene74998:intron 35.0%
AGGAATAGAAGTTAGACCTA+AGG + chr1.4:64984372-64984391 MS.gene74998:CDS 35.0%
ATATATATTGGGTGGTTACC+TGG - chr1.4:64983480-64983499 None:intergenic 35.0%
ATATGGATGATGATCGCTAT+TGG + chr1.4:64983432-64983451 MS.gene74998:CDS 35.0%
CAGGCTCATCAACTAAAATT+TGG - chr1.4:64983804-64983823 None:intergenic 35.0%
CTGTTATTGAGGTTCAGATT+AGG - chr1.4:64983653-64983672 None:intergenic 35.0%
GTCATCAGATATATATTGGG+TGG - chr1.4:64983488-64983507 None:intergenic 35.0%
TCGGTAACTATCACTTACAT+AGG - chr1.4:64983603-64983622 None:intergenic 35.0%
TGCATAGAAAGAGTGGAAAA+AGG + chr1.4:64983369-64983388 MS.gene74998:CDS 35.0%
TGTAGATACACTAACAATGC+AGG - chr1.4:64983823-64983842 None:intergenic 35.0%
! TATCTTTGCAACTTTTGCGT+TGG + chr1.4:64983910-64983929 MS.gene74998:intron 35.0%
! TGTCTTATTGGATCCAAATG+TGG + chr1.4:64984129-64984148 MS.gene74998:CDS 35.0%
ACAATGCACAACAGAGTAGA+AGG + chr1.4:64984205-64984224 MS.gene74998:CDS 40.0%
ACGATGAAGTCGATGAATTG+GGG - chr1.4:64983146-64983165 None:intergenic 40.0%
ACGGAGAAAGTGATTCCATA+CGG - chr1.4:64983117-64983136 None:intergenic 40.0%
AGAAACAAGCTCAGCAACTT+CGG - chr1.4:64983945-64983964 None:intergenic 40.0%
AGACGATGAAGTCGATGAAT+TGG - chr1.4:64983148-64983167 None:intergenic 40.0%
AGTATTTGGAGACAAGACAC+GGG - chr1.4:64984002-64984021 None:intergenic 40.0%
ATGATGATCGCTATTGGAAG+TGG + chr1.4:64983438-64983457 MS.gene74998:CDS 40.0%
CGCCCAATTATCATCAAGAA+TGG + chr1.4:64983233-64983252 MS.gene74998:CDS 40.0%
CTGAACCTCAATAACAGTGA+TGG + chr1.4:64983656-64983675 MS.gene74998:intron 40.0%
GACGATGAAGTCGATGAATT+GGG - chr1.4:64983147-64983166 None:intergenic 40.0%
GACTACCATCACTGTTATTG+AGG - chr1.4:64983664-64983683 None:intergenic 40.0%
GAGTATTTGGAGACAAGACA+CGG - chr1.4:64984003-64984022 None:intergenic 40.0%
GTCTCCAAATACTCAGTATG+CGG + chr1.4:64984009-64984028 MS.gene74998:CDS 40.0%
TAAGCCGCATACTGAGTATT+TGG - chr1.4:64984016-64984035 None:intergenic 40.0%
TAGATCTCTTGGCATTGCTT+GGG + chr1.4:64983409-64983428 MS.gene74998:CDS 40.0%
TTCAAGATGTTTGATGCCCA+AGG + chr1.4:64984043-64984062 MS.gene74998:CDS 40.0%
! GGACCACACAACGTTTTTAT+GGG + chr1.4:64983560-64983579 MS.gene74998:intron 40.0%
! TGGACCACACAACGTTTTTA+TGG + chr1.4:64983559-64983578 MS.gene74998:intron 40.0%
!! AGATACAGAGCCTTTTTGGT+TGG - chr1.4:64983200-64983219 None:intergenic 40.0%
!! AGGACAGTTCTGAAATCCTT+GGG - chr1.4:64984062-64984081 None:intergenic 40.0%
AAACAAGCTCAGCAACTTCG+GGG - chr1.4:64983943-64983962 None:intergenic 45.0%
AAAGTGATTCCATACGGCGT+CGG - chr1.4:64983111-64983130 None:intergenic 45.0%
AAATTTCCCAACAGCAGACC+AGG - chr1.4:64984343-64984362 None:intergenic 45.0%
ACACCAACTGATAACTCCTG+AGG - chr1.4:64984082-64984101 None:intergenic 45.0%
ACGGAATGTCTTGGAAACCA+CGG - chr1.4:64983075-64983094 None:intergenic 45.0%
AGGATTTCAGAACTGTCCTC+AGG + chr1.4:64984063-64984082 MS.gene74998:CDS 45.0%
AGTCAAGATGAGTGTTACCC+AGG + chr1.4:64984312-64984331 MS.gene74998:CDS 45.0%
AGTGTTACCCAGGTAAAACC+TGG + chr1.4:64984322-64984341 MS.gene74998:CDS 45.0%
CAATATTGCTCGGTCATGCT+TGG + chr1.4:64984176-64984195 MS.gene74998:CDS 45.0%
CGATGAAGTCGATGAATTGG+GGG - chr1.4:64983145-64983164 None:intergenic 45.0%
CTAGATCTCTTGGCATTGCT+TGG + chr1.4:64983408-64983427 MS.gene74998:CDS 45.0%
GAAACAAGCTCAGCAACTTC+GGG - chr1.4:64983944-64983963 None:intergenic 45.0%
GTAAAACCTGGTCTGCTGTT+GGG + chr1.4:64984334-64984353 MS.gene74998:CDS 45.0%
GTGTGGATGCTTGACATTAG+TGG + chr1.4:64983965-64983984 MS.gene74998:CDS 45.0%
TCTTGGCATTGCTTGGGATA+TGG + chr1.4:64983415-64983434 MS.gene74998:CDS 45.0%
TGCCAACACTCCAACCAAAA+AGG + chr1.4:64983187-64983206 MS.gene74998:CDS 45.0%
TGGAGTCGTATGAGAGAGTA+TGG - chr1.4:64983033-64983052 None:intergenic 45.0%
TGTCCTCAGGAGTTATCAGT+TGG + chr1.4:64984076-64984095 MS.gene74998:CDS 45.0%
! AGCGAGATACAGAGCCTTTT+TGG - chr1.4:64983204-64983223 None:intergenic 45.0%
! AGTCGTATGAGAGAGTATGG+CGG - chr1.4:64983030-64983049 None:intergenic 45.0%
! ATGCTTGCTGCTAGATCTCT+TGG + chr1.4:64983398-64983417 MS.gene74998:CDS 45.0%
!! GAGGACAGTTCTGAAATCCT+TGG - chr1.4:64984063-64984082 None:intergenic 45.0%
!! GAGTTATCAGTTGGTGTCAG+AGG + chr1.4:64984085-64984104 MS.gene74998:CDS 45.0%
!! TTGCTGAGCTTGTTTCTGTG+TGG + chr1.4:64983948-64983967 MS.gene74998:CDS 45.0%
!! TTTGGTTGGAGTGTTGGCAA+TGG - chr1.4:64983186-64983205 None:intergenic 45.0%
!!! AGCCTTTTTGGTTGGAGTGT+TGG - chr1.4:64983192-64983211 None:intergenic 45.0%
CACCCATCGCTTCTCAAACT+CGG - chr1.4:64984241-64984260 None:intergenic 50.0%
CGATGAATTGGGGGTCAGAA+CGG - chr1.4:64983136-64983155 None:intergenic 50.0%
CTCTCATACGACTCCAGTTG+TGG + chr1.4:64983037-64983056 MS.gene74998:CDS 50.0%
GGATTGCTATGCCTGATTCC+AGG + chr1.4:64983459-64983478 MS.gene74998:CDS 50.0%
GGGTGGTTGGAGATTGAGAT+GGG + chr1.4:64984256-64984275 MS.gene74998:CDS 50.0%
GGTAAAACCTGGTCTGCTGT+TGG + chr1.4:64984333-64984352 MS.gene74998:CDS 50.0%
GTCCGAGTTTGAGAAGCGAT+GGG + chr1.4:64984236-64984255 MS.gene74998:CDS 50.0%
TGGGTGGTTGGAGATTGAGA+TGG + chr1.4:64984255-64984274 MS.gene74998:CDS 50.0%
TTGGGTGGTTACCTGGAATC+AGG - chr1.4:64983473-64983492 None:intergenic 50.0%
TTTGAGAAGCGATGGGTGGT+TGG + chr1.4:64984243-64984262 MS.gene74998:CDS 50.0%
! ACAGCAGACCAGGTTTTACC+TGG - chr1.4:64984333-64984352 None:intergenic 50.0%
! CAGCAGACCAGGTTTTACCT+GGG - chr1.4:64984332-64984351 None:intergenic 50.0%
!! GTTGGAGTGTTGGCAATGGA+AGG - chr1.4:64983182-64983201 None:intergenic 50.0%
AGCGGCAGAACGGAATGTCT+TGG - chr1.4:64983084-64983103 None:intergenic 55.0%
CATACGACTCCAGTTGTGGC+CGG + chr1.4:64983041-64983060 MS.gene74998:CDS 55.0%
CGAGTTTGAGAAGCGATGGG+TGG + chr1.4:64984239-64984258 MS.gene74998:CDS 55.0%
CGTCCGAGTTTGAGAAGCGA+TGG + chr1.4:64984235-64984254 MS.gene74998:CDS 55.0%
GGCGGCATAGCTTCCACATT+TGG - chr1.4:64984145-64984164 None:intergenic 55.0%
!! GGAGTGTTGGCAATGGAAGG+AGG - chr1.4:64983179-64983198 None:intergenic 55.0%
ATGGCGGCAACGCACTCTTC+TGG - chr1.4:64983014-64983033 None:intergenic 60.0%
CGTCGGAATCAGCGGCAGAA+CGG - chr1.4:64983094-64983113 None:intergenic 60.0%
GGAAACCACGGAGAACCTGC+CGG - chr1.4:64983063-64983082 None:intergenic 60.0%
! CCATACGGCGTCGGAATCAG+CGG - chr1.4:64983102-64983121 None:intergenic 60.0%
GAGAACCTGCCGGCCACAAC+TGG - chr1.4:64983053-64983072 None:intergenic 65.0%
!! CCGCTGATTCCGACGCCGTA+TGG + chr1.4:64983099-64983118 MS.gene74998:CDS 65.0%
CGACTCCAGTTGTGGCCGGC+AGG + chr1.4:64983045-64983064 MS.gene74998:CDS 70.0%
TGTGGCCGGCAGGTTCTCCG+TGG + chr1.4:64983055-64983074 MS.gene74998:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 64982990 64984405 64982990 ID=MS.gene74998
chr1.4 mRNA 64982990 64984405 64982990 ID=MS.gene74998.t1;Parent=MS.gene74998
chr1.4 exon 64982990 64983262 64982990 ID=MS.gene74998.t1.exon1;Parent=MS.gene74998.t1
chr1.4 CDS 64982990 64983262 64982990 ID=cds.MS.gene74998.t1;Parent=MS.gene74998.t1
chr1.4 exon 64983359 64983480 64983359 ID=MS.gene74998.t1.exon2;Parent=MS.gene74998.t1
chr1.4 CDS 64983359 64983480 64983359 ID=cds.MS.gene74998.t1;Parent=MS.gene74998.t1
chr1.4 exon 64983937 64984405 64983937 ID=MS.gene74998.t1.exon3;Parent=MS.gene74998.t1
chr1.4 CDS 64983937 64984405 64983937 ID=cds.MS.gene74998.t1;Parent=MS.gene74998.t1
Gene Sequence

>MS.gene74998

ATGACAAAGTTCGATAAATTGCCAGAAGAGTGCGTTGCCGCCATACTCTCTCATACGACTCCAGTTGTGGCCGGCAGGTTCTCCGTGGTTTCCAAGACATTCCGTTCTGCCGCTGATTCCGACGCCGTATGGAATCACTTTCTCCGTTCTGACCCCCAATTCATCGACTTCATCGTCTCACACTCTCCTCCTTCCATTGCCAACACTCCAACCAAAAAGGCTCTGTATCTCGCTCTCTCTGATCGCCCAATTATCATCAAGAATGGTGAAAAGGTATTATTCTTTGTAACCGCCAATTTTTCGAATACTAGACTTATCATTGACTGTATAGAATGCTGATAAATAAGTTTTGTATGTGTTGAAATTCAGAGCATTCAATTGCATAGAAAGAGTGGAAAAAGGTGTGTCATGCTTGCTGCTAGATCTCTTGGCATTGCTTGGGATATGGATGATGATCGCTATTGGAAGTGGATTGCTATGCCTGATTCCAGGTAACCACCCAATATATATCTGATGACTTGATTACCTCATTAATTGACGACTTAATTGACTGCTATGAAGCACATATATGGACCACACAACGTTTTTATGGGATTGAATGATTTTATTTCCTATGTAAGTGATAGTTACCGACACTTACTATTGATTGATCCTATAAAACCTAATCTGAACCTCAATAACAGTGATGGTAGTCCATGTCTCATAATTCTATGTATGCATAAACAATCAAAACAACTTATTAACCGAGACACTTTTCATCATCATAATCAGTTACACTTGAAACAATTTAGTTACGCTTGGTTTACAGCTTCCAAATTTTAGTTGATGAGCCTGCATTGTTAGTGTATCTACACCTGTATAAATACTCCATTTGTGATGTTATGAATTACTTTCAACTTTTCTCTCAGCTCCTTTATTCTTATCTTTGCAACTTTTGCGTTGGATAGATTCCCCGAAGTTGCTGAGCTTGTTTCTGTGTGGATGCTTGACATTAGTGGCGAGATAAAAACCCGTGTCTTGTCTCCAAATACTCAGTATGCGGCTTATCTTGTGTTCAAGATGTTTGATGCCCAAGGATTTCAGAACTGTCCTCAGGAGTTATCAGTTGGTGTCAGAGGTAGCCATAAAAGTACTAAAACTGTCTTATTGGATCCAAATGTGGAAGCTATGCCGCCCACCATTAAATCAATATTGCTCGGTCATGCTTGGACTAGAACAATGCACAACAGAGTAGAAGGACTGCAACGTCCGAGTTTGAGAAGCGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCTTTAATTTAGGCCTCAAAAATAAAGAAGTCAAGATGAGTGTTACCCAGGTAAAACCTGGTCTGCTGTTGGGAAATTTTTTTCTTGAAGGAATAGAAGTTAGACCTAAGGAAGAAAATTAA
Protein sequence

>MS.gene74998.t1

MTKFDKLPEECVAAILSHTTPVVAGRFSVVSKTFRSAADSDAVWNHFLRSDPQFIDFIVSHSPPSIANTPTKKALYLALSDRPIIIKNGEKSIQLHRKSGKRCVMLAARSLGIAWDMDDDRYWKWIAMPDSRFPEVAELVSVWMLDISGEIKTRVLSPNTQYAAYLVFKMFDAQGFQNCPQELSVGVRGSHKSTKTVLLDPNVEAMPPTIKSILLGHAWTRTMHNRVEGLQRPSLRSDGWLEIEMGEFFNLGLKNKEVKMSVTQVKPGLLLGNFFLEGIEVRPKEEN