Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74876.t1 | XP_003590890.1 | 91.7 | 265 | 22 | 0 | 1 | 265 | 1 | 265 | 6.50E-136 | 493.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74876.t1 | Q9ZVQ6 | 48.8 | 260 | 121 | 5 | 8 | 264 | 18 | 268 | 8.7e-65 | 248.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74876.t1 | G7I5M0 | 91.7 | 265 | 22 | 0 | 1 | 265 | 1 | 265 | 4.7e-136 | 493.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74876.t1 | MTR_1g079370 | 91.698 | 265 | 22 | 0 | 1 | 265 | 1 | 265 | 2.14e-180 | 496 |
MS.gene74876.t1 | MTR_1g079380 | 83.774 | 265 | 43 | 0 | 1 | 265 | 1 | 265 | 8.43e-154 | 430 |
MS.gene74876.t1 | MTR_1g079180 | 75.373 | 268 | 60 | 3 | 1 | 265 | 1 | 265 | 2.30e-145 | 408 |
MS.gene74876.t1 | MTR_1g079260 | 69.118 | 272 | 77 | 2 | 1 | 265 | 1 | 272 | 2.66e-136 | 385 |
MS.gene74876.t1 | MTR_1g100597 | 69.597 | 273 | 74 | 3 | 1 | 265 | 1 | 272 | 6.80e-132 | 374 |
MS.gene74876.t1 | MTR_1g079460 | 69.030 | 268 | 78 | 2 | 1 | 265 | 1 | 266 | 7.04e-130 | 369 |
MS.gene74876.t1 | MTR_1g079200 | 70.370 | 270 | 69 | 4 | 1 | 265 | 1 | 264 | 3.09e-129 | 367 |
MS.gene74876.t1 | MTR_1g079230 | 63.538 | 277 | 85 | 3 | 1 | 265 | 1 | 273 | 5.67e-118 | 339 |
MS.gene74876.t1 | MTR_1g079850 | 61.922 | 281 | 91 | 4 | 1 | 265 | 1 | 281 | 3.76e-112 | 324 |
MS.gene74876.t1 | MTR_1g100613 | 66.939 | 245 | 69 | 2 | 15 | 248 | 1 | 244 | 5.41e-111 | 320 |
MS.gene74876.t1 | MTR_3g452600 | 62.357 | 263 | 93 | 4 | 4 | 265 | 10 | 267 | 2.59e-110 | 319 |
MS.gene74876.t1 | MTR_1g079250 | 62.230 | 278 | 92 | 5 | 1 | 265 | 1 | 278 | 3.61e-109 | 317 |
MS.gene74876.t1 | MTR_1g026510 | 58.304 | 283 | 100 | 6 | 1 | 265 | 1 | 283 | 1.13e-107 | 313 |
MS.gene74876.t1 | MTR_3g006850 | 56.856 | 299 | 92 | 5 | 4 | 265 | 17 | 315 | 6.74e-103 | 302 |
MS.gene74876.t1 | MTR_2g079100 | 59.387 | 261 | 96 | 2 | 4 | 262 | 9 | 261 | 6.49e-99 | 290 |
MS.gene74876.t1 | MTR_3g450990 | 56.989 | 279 | 98 | 6 | 4 | 265 | 10 | 283 | 1.43e-98 | 290 |
MS.gene74876.t1 | MTR_1g079410 | 55.185 | 270 | 113 | 4 | 2 | 265 | 6 | 273 | 4.25e-96 | 283 |
MS.gene74876.t1 | MTR_1g079350 | 56.522 | 276 | 108 | 6 | 1 | 265 | 1 | 275 | 2.58e-94 | 279 |
MS.gene74876.t1 | MTR_1g079140 | 47.973 | 296 | 120 | 5 | 3 | 265 | 12 | 306 | 2.23e-88 | 265 |
MS.gene74876.t1 | MTR_1g078470 | 72.254 | 173 | 43 | 3 | 93 | 265 | 17 | 184 | 5.63e-83 | 246 |
MS.gene74876.t1 | MTR_1g079340 | 51.736 | 288 | 114 | 6 | 1 | 265 | 40 | 325 | 9.77e-82 | 248 |
MS.gene74876.t1 | MTR_7g096300 | 56.574 | 251 | 94 | 5 | 1 | 245 | 1 | 242 | 5.32e-81 | 258 |
MS.gene74876.t1 | MTR_1g079400 | 48.057 | 283 | 111 | 3 | 4 | 265 | 12 | 279 | 6.37e-79 | 240 |
MS.gene74876.t1 | MTR_7g112550 | 44.681 | 282 | 135 | 9 | 2 | 265 | 5 | 283 | 1.62e-65 | 206 |
MS.gene74876.t1 | MTR_1g083580 | 38.489 | 278 | 155 | 6 | 2 | 265 | 6 | 281 | 2.15e-60 | 192 |
MS.gene74876.t1 | MTR_1g079240 | 59.777 | 179 | 61 | 4 | 87 | 265 | 12 | 179 | 3.65e-60 | 188 |
MS.gene74876.t1 | MTR_7g112560 | 39.623 | 265 | 143 | 6 | 7 | 265 | 4 | 257 | 3.08e-57 | 184 |
MS.gene74876.t1 | MTR_1g076870 | 61.194 | 134 | 36 | 1 | 128 | 245 | 2 | 135 | 1.06e-49 | 160 |
MS.gene74876.t1 | MTR_4g023570 | 36.882 | 263 | 133 | 6 | 7 | 265 | 4 | 237 | 1.56e-49 | 163 |
MS.gene74876.t1 | MTR_1g079130 | 44.444 | 189 | 81 | 3 | 101 | 265 | 1 | 189 | 3.69e-47 | 155 |
MS.gene74876.t1 | MTR_1g079350 | 50.299 | 167 | 72 | 4 | 1 | 159 | 1 | 164 | 3.97e-43 | 146 |
MS.gene74876.t1 | MTR_1g079210 | 56.098 | 123 | 42 | 1 | 129 | 239 | 7 | 129 | 3.17e-36 | 126 |
MS.gene74876.t1 | MTR_7g096310 | 53.333 | 135 | 47 | 4 | 60 | 185 | 35 | 162 | 3.46e-34 | 121 |
MS.gene74876.t1 | MTR_3g058640 | 58.824 | 102 | 40 | 1 | 128 | 229 | 7 | 106 | 3.08e-33 | 117 |
MS.gene74876.t1 | MTR_1g078460 | 68.966 | 87 | 27 | 0 | 1 | 87 | 64 | 150 | 4.02e-33 | 118 |
MS.gene74876.t1 | MTR_2g042540 | 60.000 | 105 | 40 | 2 | 1 | 103 | 1 | 105 | 1.30e-32 | 116 |
MS.gene74876.t1 | MTR_1g079220 | 75.000 | 68 | 15 | 1 | 165 | 232 | 1 | 66 | 6.46e-26 | 97.4 |
MS.gene74876.t1 | MTR_7g103380 | 26.087 | 276 | 178 | 6 | 4 | 264 | 19 | 283 | 1.75e-25 | 102 |
MS.gene74876.t1 | MTR_4g083970 | 28.846 | 208 | 124 | 4 | 63 | 265 | 102 | 290 | 3.94e-22 | 93.2 |
MS.gene74876.t1 | MTR_0113s0040 | 26.855 | 283 | 162 | 7 | 2 | 265 | 20 | 276 | 2.09e-19 | 85.9 |
MS.gene74876.t1 | MTR_1g079390 | 78.000 | 50 | 9 | 2 | 211 | 260 | 8 | 55 | 4.47e-17 | 73.6 |
MS.gene74876.t1 | MTR_1g101390 | 25.899 | 278 | 169 | 6 | 2 | 264 | 26 | 281 | 1.58e-16 | 77.8 |
MS.gene74876.t1 | MTR_0002s0020 | 25.641 | 273 | 175 | 7 | 3 | 262 | 21 | 278 | 1.62e-15 | 75.1 |
MS.gene74876.t1 | MTR_5g010800 | 23.759 | 282 | 170 | 8 | 2 | 264 | 15 | 270 | 5.20e-15 | 73.6 |
MS.gene74876.t1 | MTR_4g102770 | 31.973 | 147 | 94 | 3 | 4 | 146 | 19 | 163 | 7.54e-14 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74876.t1 | AT2G02360 | 48.659 | 261 | 122 | 5 | 7 | 264 | 17 | 268 | 1.28e-82 | 249 |
MS.gene74876.t1 | AT2G02340 | 44.444 | 270 | 143 | 4 | 1 | 264 | 33 | 301 | 6.94e-73 | 225 |
MS.gene74876.t1 | AT2G02240 | 45.000 | 260 | 134 | 5 | 7 | 264 | 64 | 316 | 8.40e-71 | 221 |
MS.gene74876.t1 | AT2G02250 | 44.697 | 264 | 136 | 6 | 4 | 264 | 47 | 303 | 2.99e-69 | 216 |
MS.gene74876.t1 | AT1G80110 | 46.565 | 262 | 132 | 5 | 4 | 264 | 1 | 255 | 4.27e-69 | 214 |
MS.gene74876.t1 | AT2G02230 | 38.411 | 302 | 140 | 7 | 7 | 265 | 35 | 333 | 3.28e-64 | 204 |
MS.gene74876.t1 | AT1G09155 | 41.935 | 279 | 141 | 7 | 7 | 265 | 3 | 280 | 7.60e-62 | 196 |
MS.gene74876.t1 | AT2G02350 | 40.377 | 265 | 148 | 6 | 4 | 264 | 24 | 282 | 2.98e-59 | 190 |
MS.gene74876.t1 | AT1G56250 | 42.294 | 279 | 140 | 7 | 7 | 265 | 4 | 281 | 9.77e-58 | 186 |
MS.gene74876.t1 | AT1G56240 | 41.727 | 278 | 141 | 7 | 7 | 264 | 4 | 280 | 2.89e-57 | 184 |
MS.gene74876.t1 | AT2G02320 | 40.602 | 266 | 142 | 7 | 6 | 264 | 42 | 298 | 4.76e-54 | 177 |
MS.gene74876.t1 | AT2G02310 | 36.882 | 263 | 158 | 4 | 6 | 265 | 47 | 304 | 7.09e-54 | 177 |
MS.gene74876.t1 | AT2G02300 | 37.778 | 270 | 138 | 8 | 4 | 265 | 34 | 281 | 1.95e-48 | 162 |
MS.gene74876.t1 | AT5G24560 | 41.579 | 190 | 98 | 4 | 6 | 192 | 5 | 184 | 1.21e-41 | 142 |
MS.gene74876.t1 | AT3G53000 | 27.698 | 278 | 170 | 8 | 4 | 264 | 21 | 284 | 3.38e-30 | 115 |
MS.gene74876.t1 | AT2G02350 | 38.690 | 168 | 96 | 5 | 101 | 264 | 1 | 165 | 4.51e-30 | 111 |
MS.gene74876.t1 | AT1G33920 | 31.844 | 179 | 90 | 6 | 96 | 265 | 9 | 164 | 7.45e-19 | 81.6 |
MS.gene74876.t1 | AT3G61060 | 24.101 | 278 | 169 | 7 | 6 | 265 | 27 | 280 | 5.17e-18 | 82.0 |
MS.gene74876.t1 | AT4G19850 | 32.967 | 182 | 90 | 8 | 94 | 265 | 59 | 218 | 7.90e-18 | 80.1 |
MS.gene74876.t1 | AT4G19850 | 32.418 | 182 | 91 | 8 | 94 | 265 | 17 | 176 | 8.38e-18 | 79.0 |
MS.gene74876.t1 | AT1G63090 | 29.557 | 203 | 121 | 6 | 4 | 189 | 26 | 223 | 3.76e-17 | 79.7 |
MS.gene74876.t1 | AT3G61060 | 23.381 | 278 | 172 | 6 | 6 | 265 | 27 | 281 | 4.08e-17 | 79.7 |
MS.gene74876.t1 | AT4G19840 | 31.176 | 170 | 96 | 5 | 99 | 265 | 94 | 245 | 6.13e-17 | 78.2 |
MS.gene74876.t1 | AT1G12710 | 24.460 | 278 | 169 | 6 | 4 | 264 | 28 | 281 | 1.05e-16 | 78.6 |
MS.gene74876.t1 | AT1G12710 | 30.000 | 160 | 106 | 3 | 4 | 160 | 28 | 184 | 2.55e-13 | 69.3 |
MS.gene74876.t1 | AT5G52120 | 24.483 | 290 | 166 | 7 | 1 | 264 | 18 | 280 | 3.83e-13 | 68.2 |
Find 70 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAGCTGTATATTGAGTATT+TGG | 0.131565 | 1.1:+58985537 | None:intergenic |
CTAGATCTCTTGCAATTGTT+TGG | 0.246175 | 1.1:-58987108 | MS.gene74876:CDS |
AAAAGGAATGACAGAGATTC+AGG | 0.277184 | 1.1:-58987538 | None:intergenic |
TAGATCTCTTGCAATTGTTT+GGG | 0.285923 | 1.1:-58987107 | MS.gene74876:CDS |
TGGAGATAAAGGCTGGTAAT+TGG | 0.287191 | 1.1:-58985263 | MS.gene74876:CDS |
AAGCTGTATATTGAGTATTT+GGG | 0.314170 | 1.1:+58985538 | None:intergenic |
TTCTTGAAGGAATAGAAATT+AGG | 0.317502 | 1.1:-58985227 | MS.gene74876:CDS |
CATCATCGATCATGATAATA+AGG | 0.320160 | 1.1:-58987292 | MS.gene74876:intron |
GGATTCCTTTGCCTGATTCC+AGG | 0.335609 | 1.1:-58987060 | MS.gene74876:intron |
TCAACAAGCTTATCAACTTC+AGG | 0.340561 | 1.1:+58985609 | None:intergenic |
GATATTTCATCTATCATCTC+AGG | 0.362347 | 1.1:-58987381 | MS.gene74876:CDS |
GATGAGTTTGTTGGAGATAA+AGG | 0.363302 | 1.1:-58985274 | MS.gene74876:CDS |
ATACCTTCCACTTCCACATT+TGG | 0.377228 | 1.1:+58985408 | None:intergenic |
TTTCAATTGGTTAGAAAGAG+TGG | 0.401836 | 1.1:-58987154 | MS.gene74876:CDS |
CCTCCGATTCCGACGCTGTA+TGG | 0.406897 | 1.1:-58987422 | MS.gene74876:CDS |
GCTGCTTAATTGTGTTACTT+AGG | 0.411610 | 1.1:+58985204 | None:intergenic |
TAGTACTAAAATTGTCTGTT+TGG | 0.420764 | 1.1:-58985433 | MS.gene74876:CDS |
GACAGAGATTCAGGATTTGC+CGG | 0.423087 | 1.1:-58987529 | MS.gene74876:CDS |
AAGAGTGGTCTCTTTCTTGA+AGG | 0.428845 | 1.1:-58985240 | MS.gene74876:CDS |
ATTCCATACAGCGTCGGAAT+CGG | 0.440337 | 1.1:+58987419 | None:intergenic |
ATACTAAGCACTATTGGAAC+TGG | 0.440686 | 1.1:-58987081 | MS.gene74876:CDS |
TGGAGTTGTACGAGAGACTA+TGG | 0.442874 | 1.1:+58987491 | None:intergenic |
GGGTGGTTGGAGATTGAGAT+GGG | 0.458032 | 1.1:-58985336 | MS.gene74876:CDS |
GGGGTGATACTAAGCACTAT+TGG | 0.458105 | 1.1:-58987087 | MS.gene74876:CDS |
GCGCTAACTAACCTGGAATC+AGG | 0.472883 | 1.1:+58987049 | None:intergenic |
AGAAGTCCTGATGAGTTTGT+TGG | 0.481141 | 1.1:-58985283 | MS.gene74876:CDS |
ATGGCGGCAATGCATCCTTC+CGG | 0.482859 | 1.1:+58987510 | None:intergenic |
CGTCCTAGTGTGAGAAGCGA+TGG | 0.485861 | 1.1:-58985357 | MS.gene74876:CDS |
TTATCTCCAACAAACTCATC+AGG | 0.495784 | 1.1:+58985277 | None:intergenic |
TTATCATGATCGATGATGAC+AGG | 0.505190 | 1.1:+58987297 | None:intergenic |
GTAGGAGCGTTGGCGAGTAA+AGG | 0.512124 | 1.1:+58987354 | None:intergenic |
AGTTTGTTGGAGATAAAGGC+TGG | 0.513728 | 1.1:-58985270 | MS.gene74876:CDS |
TGGGTGGTTGGAGATTGAGA+TGG | 0.517146 | 1.1:-58985337 | MS.gene74876:CDS |
GAGTCTCTGCCGGCGTCGAG+TGG | 0.524622 | 1.1:+58987471 | None:intergenic |
CAACAAGCTTATCAACTTCA+GGG | 0.526604 | 1.1:+58985610 | None:intergenic |
ATGCAGCATAACAGAGCAGT+AGG | 0.534871 | 1.1:-58985387 | MS.gene74876:CDS |
CGTCGGAATCGGAGGCTGAT+CGG | 0.538969 | 1.1:+58987430 | None:intergenic |
CACCCATCGCTTCTCACACT+AGG | 0.543006 | 1.1:+58985354 | None:intergenic |
CCATACAGCGTCGGAATCGG+AGG | 0.547740 | 1.1:+58987422 | None:intergenic |
AGATCTCTTGCAATTGTTTG+GGG | 0.552612 | 1.1:-58987106 | MS.gene74876:CDS |
GAGATTCAGGATTTGCCGGA+AGG | 0.560627 | 1.1:-58987525 | MS.gene74876:CDS |
GTTCAAAATGATTGATGCGT+GGG | 0.567046 | 1.1:-58985508 | MS.gene74876:CDS |
TTTGGATCCAAATGTGGAAG+TGG | 0.569537 | 1.1:-58985415 | MS.gene74876:CDS |
ATGATAGATGAAATATCAGA+AGG | 0.573253 | 1.1:+58987387 | None:intergenic |
TGTGAGAAGCGATGGGTGGT+TGG | 0.576323 | 1.1:-58985349 | MS.gene74876:CDS |
ATATTTCATCTATCATCTCA+GGG | 0.577226 | 1.1:-58987380 | MS.gene74876:CDS |
GATCCAAATGTGGAAGTGGA+AGG | 0.579730 | 1.1:-58985411 | MS.gene74876:CDS |
CGTCCTGTGGAGTTATCAGT+TGG | 0.583128 | 1.1:-58985474 | MS.gene74876:CDS |
GTATGTTTGCTAGAAATTCG+TGG | 0.589897 | 1.1:-58985585 | MS.gene74876:CDS |
AAGGCTGGTAATTGGAAGAG+TGG | 0.592463 | 1.1:-58985255 | MS.gene74876:CDS |
GTGGTTGGAGATTGAGATGG+GGG | 0.596500 | 1.1:-58985334 | MS.gene74876:CDS |
TTATCAGTTGGTGTCGAAGG+TGG | 0.605148 | 1.1:-58985462 | MS.gene74876:CDS |
ACACCAACTGATAACTCCAC+AGG | 0.607721 | 1.1:+58985471 | None:intergenic |
AGCTGTATATTGAGTATTTG+GGG | 0.611231 | 1.1:+58985539 | None:intergenic |
AGAAACGACAGAGTCTCTGC+CGG | 0.615620 | 1.1:+58987461 | None:intergenic |
GGTGGTTGGAGATTGAGATG+GGG | 0.619250 | 1.1:-58985335 | MS.gene74876:CDS |
GAGTTATCAGTTGGTGTCGA+AGG | 0.620810 | 1.1:-58985465 | MS.gene74876:CDS |
TGTCTGTTTGGATCCAAATG+TGG | 0.625217 | 1.1:-58985421 | MS.gene74876:CDS |
ACTAACCTGGAATCAGGCAA+AGG | 0.635048 | 1.1:+58987055 | None:intergenic |
GGGATTTCAGAACCGTCCTG+TGG | 0.635758 | 1.1:-58985487 | MS.gene74876:CDS |
GTCCTAGTGTGAGAAGCGAT+GGG | 0.643186 | 1.1:-58985356 | MS.gene74876:CDS |
TGTTCAAAATGATTGATGCG+TGG | 0.644329 | 1.1:-58985509 | MS.gene74876:CDS |
TATCATGATCGATGATGACA+GGG | 0.656082 | 1.1:+58987298 | None:intergenic |
TTCAAAATGATTGATGCGTG+GGG | 0.672657 | 1.1:-58985507 | MS.gene74876:CDS |
AAAACGATTCCATACAGCGT+CGG | 0.672667 | 1.1:+58987413 | None:intergenic |
AGTATTTGGGGACAGAACAA+CGG | 0.674978 | 1.1:+58985551 | None:intergenic |
CTAGTGTGAGAAGCGATGGG+TGG | 0.709944 | 1.1:-58985353 | MS.gene74876:CDS |
CAACTGATAACTCCACAGGA+CGG | 0.710853 | 1.1:+58985475 | None:intergenic |
CGTACAACTCCACTCGACGC+CGG | 0.717247 | 1.1:-58987480 | MS.gene74876:CDS |
AGTTGTACGAGAGACTATGG+CGG | 0.789727 | 1.1:+58987494 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATATATATA+AGG | + | chr1.1:58987027-58987008 | None:intergenic | 0.0% |
!! | ATTCAAAAAGAATAACAAAA+AGG | - | chr1.1:58985993-58986012 | MS.gene74876:intron | 15.0% |
!! | AATGGTATCTAGTATTAATT+AGG | + | chr1.1:58985767-58985786 | None:intergenic | 20.0% |
!! | ATTGAACATGCTTAAAATTT+GGG | + | chr1.1:58986162-58986181 | None:intergenic | 20.0% |
!! | GATGCATTCAAAAATATATA+GGG | + | chr1.1:58986414-58986433 | None:intergenic | 20.0% |
!! | TGATGCATTCAAAAATATAT+AGG | + | chr1.1:58986415-58986434 | None:intergenic | 20.0% |
!! | TTGTAAAGTAACAAACAAAT+TGG | + | chr1.1:58986463-58986482 | None:intergenic | 20.0% |
!!! | AAAACTCTGAAAATTTTTGA+AGG | + | chr1.1:58985578-58985597 | None:intergenic | 20.0% |
!!! | AAATTTTCAGAGTTTTCAAT+TGG | - | chr1.1:58985582-58985601 | MS.gene74876:CDS | 20.0% |
!!! | GTAAAATTTCTAAGAAAACA+TGG | + | chr1.1:58986652-58986671 | None:intergenic | 20.0% |
!!! | TAAGTTATATATGCCATTTT+AGG | + | chr1.1:58986881-58986900 | None:intergenic | 20.0% |
!!! | TGGTCAGATATTTTAAAATT+TGG | + | chr1.1:58986443-58986462 | None:intergenic | 20.0% |
! | AAGCTGTATATTGAGTATTT+GGG | + | chr1.1:58987214-58987233 | None:intergenic | 25.0% |
! | ATACCATATATCAAAATCCA+TGG | - | chr1.1:58986110-58986129 | MS.gene74876:intron | 25.0% |
! | ATATTTCATCTATCATCTCA+GGG | - | chr1.1:58985369-58985388 | MS.gene74876:CDS | 25.0% |
! | ATGATAGATGAAATATCAGA+AGG | + | chr1.1:58985365-58985384 | None:intergenic | 25.0% |
! | CATTCAAAAATATATAGGGT+CGG | + | chr1.1:58986410-58986429 | None:intergenic | 25.0% |
! | CTTAATATTCGAGAAATTGA+CGG | + | chr1.1:58985501-58985520 | None:intergenic | 25.0% |
! | GATTGAACATGCTTAAAATT+TGG | + | chr1.1:58986163-58986182 | None:intergenic | 25.0% |
! | TAAGCTGTATATTGAGTATT+TGG | + | chr1.1:58987215-58987234 | None:intergenic | 25.0% |
! | TAGTACTAAAATTGTCTGTT+TGG | - | chr1.1:58987316-58987335 | MS.gene74876:CDS | 25.0% |
! | TTCTTGAAGGAATAGAAATT+AGG | - | chr1.1:58987522-58987541 | MS.gene74876:CDS | 25.0% |
!! | CTTTGTTTGGTAAAAAATAG+TGG | + | chr1.1:58985897-58985916 | None:intergenic | 25.0% |
!!! | AAAAATAGTGGATAGTTGAT+AGG | + | chr1.1:58985885-58985904 | None:intergenic | 25.0% |
!!! | AAAGCCTTGTCATTTTTTAT+GGG | - | chr1.1:58985913-58985932 | MS.gene74876:intron | 25.0% |
!!! | ATGGATTTTGATATATGGTA+TGG | + | chr1.1:58986111-58986130 | None:intergenic | 25.0% |
ACCTTATGCAAAAGATTGAA+TGG | + | chr1.1:58986708-58986727 | None:intergenic | 30.0% | |
AGCTGTATATTGAGTATTTG+GGG | + | chr1.1:58987213-58987232 | None:intergenic | 30.0% | |
AGTGATCAATTACTGATGAT+GGG | - | chr1.1:58985961-58985980 | MS.gene74876:intron | 30.0% | |
CATCATCGATCATGATAATA+AGG | - | chr1.1:58985457-58985476 | MS.gene74876:CDS | 30.0% | |
CGTCAATTTCTCGAATATTA+AGG | - | chr1.1:58985499-58985518 | MS.gene74876:CDS | 30.0% | |
GAATGTTGGATTTCCTAAAA+TGG | - | chr1.1:58986865-58986884 | MS.gene74876:intron | 30.0% | |
GATATTTCATCTATCATCTC+AGG | - | chr1.1:58985368-58985387 | MS.gene74876:CDS | 30.0% | |
GATCGTTAACTAAAAATTGC+AGG | + | chr1.1:58986965-58986984 | None:intergenic | 30.0% | |
GATTGTCACAAAATAAGAGT+TGG | + | chr1.1:58986747-58986766 | None:intergenic | 30.0% | |
TAGATCTCTTGCAATTGTTT+GGG | - | chr1.1:58985642-58985661 | MS.gene74876:intron | 30.0% | |
TAGTGATCAATTACTGATGA+TGG | - | chr1.1:58985960-58985979 | MS.gene74876:intron | 30.0% | |
TCAGTAATTGATCACTAACA+TGG | + | chr1.1:58985957-58985976 | None:intergenic | 30.0% | |
TTTCAATTGGTTAGAAAGAG+TGG | - | chr1.1:58985595-58985614 | MS.gene74876:CDS | 30.0% | |
! | TCCTTTTAGGCTTTTAGTAT+GGG | - | chr1.1:58986835-58986854 | MS.gene74876:intron | 30.0% |
!! | AAAAATGACAAGGCTTTGTT+TGG | + | chr1.1:58985910-58985929 | None:intergenic | 30.0% |
!! | AGACAATTTTAGTACTACTC+TGG | + | chr1.1:58987313-58987332 | None:intergenic | 30.0% |
!! | TAGCCATGGATTTTGATATA+TGG | + | chr1.1:58986116-58986135 | None:intergenic | 30.0% |
!! | TTTGTGTACTACTTTTGAAC+AGG | - | chr1.1:58987114-58987133 | MS.gene74876:CDS | 30.0% |
!!! | AATTACTGATGATGGGTTTT+AGG | - | chr1.1:58985968-58985987 | MS.gene74876:intron | 30.0% |
!!! | AGATAGAGATCTTTTTTGGT+AGG | + | chr1.1:58985416-58985435 | None:intergenic | 30.0% |
!!! | AGCAAGATAGAGATCTTTTT+TGG | + | chr1.1:58985420-58985439 | None:intergenic | 30.0% |
!!! | ATTACTGATGATGGGTTTTA+GGG | - | chr1.1:58985969-58985988 | MS.gene74876:intron | 30.0% |
!!! | CAAAGCCTTGTCATTTTTTA+TGG | - | chr1.1:58985912-58985931 | MS.gene74876:intron | 30.0% |
AACTTCATCCTTACACTATC+AGG | - | chr1.1:58986560-58986579 | MS.gene74876:intron | 35.0% | |
AATGGCCAAGGTAATTTGAT+GGG | + | chr1.1:58986690-58986709 | None:intergenic | 35.0% | |
AGATCTCTTGCAATTGTTTG+GGG | - | chr1.1:58985643-58985662 | MS.gene74876:intron | 35.0% | |
ATACTAAGCACTATTGGAAC+TGG | - | chr1.1:58985668-58985687 | MS.gene74876:intron | 35.0% | |
CAACAAGCTTATCAACTTCA+GGG | + | chr1.1:58987142-58987161 | None:intergenic | 35.0% | |
CAAGCCCATAAAAAATGACA+AGG | + | chr1.1:58985920-58985939 | None:intergenic | 35.0% | |
CACAAAATAAGAGTTGGAGT+TGG | + | chr1.1:58986741-58986760 | None:intergenic | 35.0% | |
CATCGATCATGATAATAAGG+TGG | - | chr1.1:58985460-58985479 | MS.gene74876:CDS | 35.0% | |
CCAACTATTCTTCACTAACT+TGG | + | chr1.1:58986076-58986095 | None:intergenic | 35.0% | |
CCAAGTTAGTGAAGAATAGT+TGG | - | chr1.1:58986073-58986092 | MS.gene74876:intron | 35.0% | |
CTAGATCTCTTGCAATTGTT+TGG | - | chr1.1:58985641-58985660 | MS.gene74876:intron | 35.0% | |
CTTACCAAAGAGACCTTAAT+CGG | + | chr1.1:58985815-58985834 | None:intergenic | 35.0% | |
GAAATCCCATCAAATTACCT+TGG | - | chr1.1:58986682-58986701 | MS.gene74876:intron | 35.0% | |
GATTAGAAGATGGCAAAAGT+CGG | + | chr1.1:58986054-58986073 | None:intergenic | 35.0% | |
GGTCGATAAATTAACAATGC+AGG | + | chr1.1:58986987-58987006 | None:intergenic | 35.0% | |
GTGCTTGCAAAAATTTCTGA+TGG | - | chr1.1:58986189-58986208 | MS.gene74876:intron | 35.0% | |
GTTCAAAATGATTGATGCGT+GGG | - | chr1.1:58987241-58987260 | MS.gene74876:intron | 35.0% | |
TACATGTAGCATCTTCAATG+TGG | + | chr1.1:58986628-58986647 | None:intergenic | 35.0% | |
TATCATGATCGATGATGACA+GGG | + | chr1.1:58985454-58985473 | None:intergenic | 35.0% | |
TATTCGAGAAATTGACGGTT+AGG | + | chr1.1:58985496-58985515 | None:intergenic | 35.0% | |
TCAACAAGCTTATCAACTTC+AGG | + | chr1.1:58987143-58987162 | None:intergenic | 35.0% | |
TCCAAATTCTCTAAGTCACA+AGG | + | chr1.1:58986215-58986234 | None:intergenic | 35.0% | |
TCCCATACTAAAAGCCTAAA+AGG | + | chr1.1:58986839-58986858 | None:intergenic | 35.0% | |
TGTTCAAAATGATTGATGCG+TGG | - | chr1.1:58987240-58987259 | MS.gene74876:intron | 35.0% | |
TTATCATGATCGATGATGAC+AGG | + | chr1.1:58985455-58985474 | None:intergenic | 35.0% | |
TTATCTCCAACAAACTCATC+AGG | + | chr1.1:58987475-58987494 | None:intergenic | 35.0% | |
TTCAAAATGATTGATGCGTG+GGG | - | chr1.1:58987242-58987261 | MS.gene74876:intron | 35.0% | |
! | CACTAACTTGGATTAGAAGA+TGG | + | chr1.1:58986064-58986083 | None:intergenic | 35.0% |
! | GCCATTCAATCTTTTGCATA+AGG | - | chr1.1:58986704-58986723 | MS.gene74876:intron | 35.0% |
! | GTATGTTTGCTAGAAATTCG+TGG | - | chr1.1:58987164-58987183 | MS.gene74876:intron | 35.0% |
! | GTCCTTTTAGGCTTTTAGTA+TGG | - | chr1.1:58986834-58986853 | MS.gene74876:intron | 35.0% |
! | TTAGTGAAGAATAGTTGGTG+TGG | - | chr1.1:58986078-58986097 | MS.gene74876:intron | 35.0% |
!! | AATCAAACCAGTACCGATTA+AGG | - | chr1.1:58985799-58985818 | MS.gene74876:intron | 35.0% |
!! | GATGAGTTTGTTGGAGATAA+AGG | - | chr1.1:58987475-58987494 | MS.gene74876:CDS | 35.0% |
!! | TAATCGGTACTGGTTTGATT+CGG | + | chr1.1:58985799-58985818 | None:intergenic | 35.0% |
!! | TTGATTCGGTGAACAAGAAA+TGG | + | chr1.1:58985785-58985804 | None:intergenic | 35.0% |
!!! | TTTTTTGATCCTGATTGCTG+CGG | - | chr1.1:58986381-58986400 | MS.gene74876:intron | 35.0% |
AAAACGATTCCATACAGCGT+CGG | + | chr1.1:58985339-58985358 | None:intergenic | 40.0% | |
AAAGAGACCTTAATCGGTAC+TGG | + | chr1.1:58985809-58985828 | None:intergenic | 40.0% | |
AACTGCAGAGTTACAGAAGA+AGG | + | chr1.1:58986339-58986358 | None:intergenic | 40.0% | |
AAGAGTGGTCTCTTTCTTGA+AGG | - | chr1.1:58987509-58987528 | MS.gene74876:CDS | 40.0% | |
AAGTTAAGCGCTAACTAACC+TGG | + | chr1.1:58985710-58985729 | None:intergenic | 40.0% | |
ACCCTAGTAAGCTTCTACAT+AGG | + | chr1.1:58986540-58986559 | None:intergenic | 40.0% | |
ACTTAGCTGAAGTGATATGG+AGG | + | chr1.1:58986245-58986264 | None:intergenic | 40.0% | |
AGAAGTCCTGATGAGTTTGT+TGG | - | chr1.1:58987466-58987485 | MS.gene74876:CDS | 40.0% | |
AGTATTTGGGGACAGAACAA+CGG | + | chr1.1:58987201-58987220 | None:intergenic | 40.0% | |
ATACCTTCCACTTCCACATT+TGG | + | chr1.1:58987344-58987363 | None:intergenic | 40.0% | |
CGGTTAATTCTTAGCAGATG+AGG | + | chr1.1:58986034-58986053 | None:intergenic | 40.0% | |
GAATGGCCAAGGTAATTTGA+TGG | + | chr1.1:58986691-58986710 | None:intergenic | 40.0% | |
GACACTTAGCTGAAGTGATA+TGG | + | chr1.1:58986248-58986267 | None:intergenic | 40.0% | |
GAGTTACAGAAGAAGGATCT+TGG | + | chr1.1:58986332-58986351 | None:intergenic | 40.0% | |
GCCTATGTAGAAGCTTACTA+GGG | - | chr1.1:58986536-58986555 | MS.gene74876:intron | 40.0% | |
GCCTTGTGACTTAGAGAATT+TGG | - | chr1.1:58986211-58986230 | MS.gene74876:intron | 40.0% | |
GTATGGGAGAAGATGAATGT+TGG | - | chr1.1:58986851-58986870 | MS.gene74876:intron | 40.0% | |
TACATAGGCCAGATAGTGTA+AGG | + | chr1.1:58986525-58986544 | None:intergenic | 40.0% | |
TCCTTAGTCCTTACACTATC+TGG | - | chr1.1:58986514-58986533 | MS.gene74876:intron | 40.0% | |
TGCAAAAGATTGAATGGCCA+AGG | + | chr1.1:58986702-58986721 | None:intergenic | 40.0% | |
TGGAGATAAAGGCTGGTAAT+TGG | - | chr1.1:58987486-58987505 | MS.gene74876:CDS | 40.0% | |
TGTCTGTTTGGATCCAAATG+TGG | - | chr1.1:58987328-58987347 | MS.gene74876:CDS | 40.0% | |
TTTGGATCCAAATGTGGAAG+TGG | - | chr1.1:58987334-58987353 | MS.gene74876:CDS | 40.0% | |
! | AAAATTTGGGTTTGAACCCG+AGG | + | chr1.1:58986149-58986168 | None:intergenic | 40.0% |
! | AGAATAGTTGGTGTGGTGTT+AGG | - | chr1.1:58986085-58986104 | MS.gene74876:intron | 40.0% |
! | AGCAATGTCGATGTCCTTTT+AGG | - | chr1.1:58986822-58986841 | MS.gene74876:intron | 40.0% |
! | TACATAGGCCTGATAGTGTA+AGG | + | chr1.1:58986571-58986590 | None:intergenic | 40.0% |
! | TTTTGCAACCAACTTCAGCT+TGG | - | chr1.1:58986302-58986321 | MS.gene74876:intron | 40.0% |
!! | AGTACCGATTAAGGTCTCTT+TGG | - | chr1.1:58985808-58985827 | MS.gene74876:intron | 40.0% |
!! | AGTTTGTTGGAGATAAAGGC+TGG | - | chr1.1:58987479-58987498 | MS.gene74876:CDS | 40.0% |
!! | GTTGATAGGCTAGCTTATAG+CGG | + | chr1.1:58985871-58985890 | None:intergenic | 40.0% |
!!! | ATCTTTTTTGGTAGGAGCGT+TGG | + | chr1.1:58985408-58985427 | None:intergenic | 40.0% |
AAGGCTGGTAATTGGAAGAG+TGG | - | chr1.1:58987494-58987513 | MS.gene74876:CDS | 45.0% | |
ACACCAACTGATAACTCCAC+AGG | + | chr1.1:58987281-58987300 | None:intergenic | 45.0% | |
ACACTTATCACGAGAACCTG+AGG | - | chr1.1:58986794-58986813 | MS.gene74876:intron | 45.0% | |
ACTAACCTGGAATCAGGCAA+AGG | + | chr1.1:58985697-58985716 | None:intergenic | 45.0% | |
AGTTGTACGAGAGACTATGG+CGG | + | chr1.1:58985258-58985277 | None:intergenic | 45.0% | |
ATGCAGCATAACAGAGCAGT+AGG | - | chr1.1:58987362-58987381 | MS.gene74876:CDS | 45.0% | |
CAACTGATAACTCCACAGGA+CGG | + | chr1.1:58987277-58987296 | None:intergenic | 45.0% | |
GACAGAGATTCAGGATTTGC+CGG | - | chr1.1:58985220-58985239 | MS.gene74876:CDS | 45.0% | |
GATCCAAATGTGGAAGTGGA+AGG | - | chr1.1:58987338-58987357 | MS.gene74876:CDS | 45.0% | |
GCCAGATAGTGTAAGGACTA+AGG | + | chr1.1:58986518-58986537 | None:intergenic | 45.0% | |
GGCCTAGTAAGCTTCTACAT+AGG | + | chr1.1:58986586-58986605 | None:intergenic | 45.0% | |
GGCCTATGTAGAAGCTTACT+AGG | - | chr1.1:58986535-58986554 | MS.gene74876:intron | 45.0% | |
GGGGTGATACTAAGCACTAT+TGG | - | chr1.1:58985662-58985681 | MS.gene74876:intron | 45.0% | |
TCAGGTTCTCGTGATAAGTG+TGG | + | chr1.1:58986795-58986814 | None:intergenic | 45.0% | |
TGGAGTTGTACGAGAGACTA+TGG | + | chr1.1:58985261-58985280 | None:intergenic | 45.0% | |
! | ATTCCATACAGCGTCGGAAT+CGG | + | chr1.1:58985333-58985352 | None:intergenic | 45.0% |
!! | GAGTTATCAGTTGGTGTCGA+AGG | - | chr1.1:58987284-58987303 | MS.gene74876:intron | 45.0% |
!! | TTATCAGTTGGTGTCGAAGG+TGG | - | chr1.1:58987287-58987306 | MS.gene74876:intron | 45.0% |
AGAAACGACAGAGTCTCTGC+CGG | + | chr1.1:58985291-58985310 | None:intergenic | 50.0% | |
AGCTTACTAGGCCACATGTG+TGG | - | chr1.1:58986593-58986612 | MS.gene74876:intron | 50.0% | |
ATGGGGGAGTTCTTCAGTTC+AGG | - | chr1.1:58987431-58987450 | MS.gene74876:CDS | 50.0% | |
CGTCCTGTGGAGTTATCAGT+TGG | - | chr1.1:58987275-58987294 | MS.gene74876:intron | 50.0% | |
GAGATTCAGGATTTGCCGGA+AGG | - | chr1.1:58985224-58985243 | MS.gene74876:CDS | 50.0% | |
GCGCTAACTAACCTGGAATC+AGG | + | chr1.1:58985703-58985722 | None:intergenic | 50.0% | |
GGATTCCTTTGCCTGATTCC+AGG | - | chr1.1:58985689-58985708 | MS.gene74876:intron | 50.0% | |
GGGTGGTTGGAGATTGAGAT+GGG | - | chr1.1:58987413-58987432 | MS.gene74876:CDS | 50.0% | |
GGTGGTTGGAGATTGAGATG+GGG | - | chr1.1:58987414-58987433 | MS.gene74876:CDS | 50.0% | |
GTCCTAGTGTGAGAAGCGAT+GGG | - | chr1.1:58987393-58987412 | MS.gene74876:CDS | 50.0% | |
GTGGTTGGAGATTGAGATGG+GGG | - | chr1.1:58987415-58987434 | MS.gene74876:CDS | 50.0% | |
TCGACATTGCTATGTGCCTC+AGG | + | chr1.1:58986813-58986832 | None:intergenic | 50.0% | |
TGGGTGGTTGGAGATTGAGA+TGG | - | chr1.1:58987412-58987431 | MS.gene74876:CDS | 50.0% | |
! | ATTTGGGTTTGAACCCGAGG+TGG | + | chr1.1:58986146-58986165 | None:intergenic | 50.0% |
ATGGCGGCAATGCATCCTTC+CGG | + | chr1.1:58985242-58985261 | None:intergenic | 55.0% | |
ATGGCTAGCAGCTACCACCT+CGG | - | chr1.1:58986129-58986148 | MS.gene74876:intron | 55.0% | |
CACCCATCGCTTCTCACACT+AGG | + | chr1.1:58987398-58987417 | None:intergenic | 55.0% | |
CGTCCTAGTGTGAGAAGCGA+TGG | - | chr1.1:58987392-58987411 | MS.gene74876:CDS | 55.0% | |
CTAGTGTGAGAAGCGATGGG+TGG | - | chr1.1:58987396-58987415 | MS.gene74876:CDS | 55.0% | |
GGATCCAGTGTCCACACATG+TGG | + | chr1.1:58986607-58986626 | None:intergenic | 55.0% | |
GGGATTTCAGAACCGTCCTG+TGG | - | chr1.1:58987262-58987281 | MS.gene74876:intron | 55.0% | |
TAGGCCACATGTGTGGACAC+TGG | - | chr1.1:58986600-58986619 | MS.gene74876:intron | 55.0% | |
TGTGAGAAGCGATGGGTGGT+TGG | - | chr1.1:58987400-58987419 | MS.gene74876:CDS | 55.0% | |
TTGGCGCTCCAAGCTGAAGT+TGG | + | chr1.1:58986313-58986332 | None:intergenic | 55.0% | |
!! | GTAGGAGCGTTGGCGAGTAA+AGG | + | chr1.1:58985398-58985417 | None:intergenic | 55.0% |
CCTCCGATTCCGACGCTGTA+TGG | - | chr1.1:58985327-58985346 | MS.gene74876:CDS | 60.0% | |
CGTACAACTCCACTCGACGC+CGG | - | chr1.1:58985269-58985288 | MS.gene74876:CDS | 60.0% | |
CGTCGGAATCGGAGGCTGAT+CGG | + | chr1.1:58985322-58985341 | None:intergenic | 60.0% | |
GAGGTGGTAGCTGCTAGCCA+TGG | + | chr1.1:58986130-58986149 | None:intergenic | 60.0% | |
TGGCTAGCAGCTACCACCTC+GGG | - | chr1.1:58986130-58986149 | MS.gene74876:intron | 60.0% | |
! | CCATACAGCGTCGGAATCGG+AGG | + | chr1.1:58985330-58985349 | None:intergenic | 60.0% |
! | GGTCGGTTTCCGCAGCAATC+AGG | + | chr1.1:58986393-58986412 | None:intergenic | 60.0% |
! | GAGTCTCTGCCGGCGTCGAG+TGG | + | chr1.1:58985281-58985300 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 58985218 | 58987553 | 58985218 | ID=MS.gene74876 |
chr1.1 | mRNA | 58985218 | 58987553 | 58985218 | ID=MS.gene74876.t1;Parent=MS.gene74876 |
chr1.1 | exon | 58987293 | 58987553 | 58987293 | ID=MS.gene74876.t1.exon1;Parent=MS.gene74876.t1 |
chr1.1 | CDS | 58987293 | 58987553 | 58987293 | ID=cds.MS.gene74876.t1;Parent=MS.gene74876.t1 |
chr1.1 | exon | 58987061 | 58987179 | 58987061 | ID=MS.gene74876.t1.exon2;Parent=MS.gene74876.t1 |
chr1.1 | CDS | 58987061 | 58987179 | 58987061 | ID=cds.MS.gene74876.t1;Parent=MS.gene74876.t1 |
chr1.1 | exon | 58985218 | 58985635 | 58985218 | ID=MS.gene74876.t1.exon3;Parent=MS.gene74876.t1 |
chr1.1 | CDS | 58985218 | 58985635 | 58985218 | ID=cds.MS.gene74876.t1;Parent=MS.gene74876.t1 |
Gene Sequence |
Protein sequence |