AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74876


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74876.t1 MTR_1g079370 91.698 265 22 0 1 265 1 265 2.14e-180 496
MS.gene74876.t1 MTR_1g079380 83.774 265 43 0 1 265 1 265 8.43e-154 430
MS.gene74876.t1 MTR_1g079180 75.373 268 60 3 1 265 1 265 2.30e-145 408
MS.gene74876.t1 MTR_1g079260 69.118 272 77 2 1 265 1 272 2.66e-136 385
MS.gene74876.t1 MTR_1g100597 69.597 273 74 3 1 265 1 272 6.80e-132 374
MS.gene74876.t1 MTR_1g079460 69.030 268 78 2 1 265 1 266 7.04e-130 369
MS.gene74876.t1 MTR_1g079200 70.370 270 69 4 1 265 1 264 3.09e-129 367
MS.gene74876.t1 MTR_1g079230 63.538 277 85 3 1 265 1 273 5.67e-118 339
MS.gene74876.t1 MTR_1g079850 61.922 281 91 4 1 265 1 281 3.76e-112 324
MS.gene74876.t1 MTR_1g100613 66.939 245 69 2 15 248 1 244 5.41e-111 320
MS.gene74876.t1 MTR_3g452600 62.357 263 93 4 4 265 10 267 2.59e-110 319
MS.gene74876.t1 MTR_1g079250 62.230 278 92 5 1 265 1 278 3.61e-109 317
MS.gene74876.t1 MTR_1g026510 58.304 283 100 6 1 265 1 283 1.13e-107 313
MS.gene74876.t1 MTR_3g006850 56.856 299 92 5 4 265 17 315 6.74e-103 302
MS.gene74876.t1 MTR_2g079100 59.387 261 96 2 4 262 9 261 6.49e-99 290
MS.gene74876.t1 MTR_3g450990 56.989 279 98 6 4 265 10 283 1.43e-98 290
MS.gene74876.t1 MTR_1g079410 55.185 270 113 4 2 265 6 273 4.25e-96 283
MS.gene74876.t1 MTR_1g079350 56.522 276 108 6 1 265 1 275 2.58e-94 279
MS.gene74876.t1 MTR_1g079140 47.973 296 120 5 3 265 12 306 2.23e-88 265
MS.gene74876.t1 MTR_1g078470 72.254 173 43 3 93 265 17 184 5.63e-83 246
MS.gene74876.t1 MTR_1g079340 51.736 288 114 6 1 265 40 325 9.77e-82 248
MS.gene74876.t1 MTR_7g096300 56.574 251 94 5 1 245 1 242 5.32e-81 258
MS.gene74876.t1 MTR_1g079400 48.057 283 111 3 4 265 12 279 6.37e-79 240
MS.gene74876.t1 MTR_7g112550 44.681 282 135 9 2 265 5 283 1.62e-65 206
MS.gene74876.t1 MTR_1g083580 38.489 278 155 6 2 265 6 281 2.15e-60 192
MS.gene74876.t1 MTR_1g079240 59.777 179 61 4 87 265 12 179 3.65e-60 188
MS.gene74876.t1 MTR_7g112560 39.623 265 143 6 7 265 4 257 3.08e-57 184
MS.gene74876.t1 MTR_1g076870 61.194 134 36 1 128 245 2 135 1.06e-49 160
MS.gene74876.t1 MTR_4g023570 36.882 263 133 6 7 265 4 237 1.56e-49 163
MS.gene74876.t1 MTR_1g079130 44.444 189 81 3 101 265 1 189 3.69e-47 155
MS.gene74876.t1 MTR_1g079350 50.299 167 72 4 1 159 1 164 3.97e-43 146
MS.gene74876.t1 MTR_1g079210 56.098 123 42 1 129 239 7 129 3.17e-36 126
MS.gene74876.t1 MTR_7g096310 53.333 135 47 4 60 185 35 162 3.46e-34 121
MS.gene74876.t1 MTR_3g058640 58.824 102 40 1 128 229 7 106 3.08e-33 117
MS.gene74876.t1 MTR_1g078460 68.966 87 27 0 1 87 64 150 4.02e-33 118
MS.gene74876.t1 MTR_2g042540 60.000 105 40 2 1 103 1 105 1.30e-32 116
MS.gene74876.t1 MTR_1g079220 75.000 68 15 1 165 232 1 66 6.46e-26 97.4
MS.gene74876.t1 MTR_7g103380 26.087 276 178 6 4 264 19 283 1.75e-25 102
MS.gene74876.t1 MTR_4g083970 28.846 208 124 4 63 265 102 290 3.94e-22 93.2
MS.gene74876.t1 MTR_0113s0040 26.855 283 162 7 2 265 20 276 2.09e-19 85.9
MS.gene74876.t1 MTR_1g079390 78.000 50 9 2 211 260 8 55 4.47e-17 73.6
MS.gene74876.t1 MTR_1g101390 25.899 278 169 6 2 264 26 281 1.58e-16 77.8
MS.gene74876.t1 MTR_0002s0020 25.641 273 175 7 3 262 21 278 1.62e-15 75.1
MS.gene74876.t1 MTR_5g010800 23.759 282 170 8 2 264 15 270 5.20e-15 73.6
MS.gene74876.t1 MTR_4g102770 31.973 147 94 3 4 146 19 163 7.54e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74876.t1 AT2G02360 48.659 261 122 5 7 264 17 268 1.28e-82 249
MS.gene74876.t1 AT2G02340 44.444 270 143 4 1 264 33 301 6.94e-73 225
MS.gene74876.t1 AT2G02240 45.000 260 134 5 7 264 64 316 8.40e-71 221
MS.gene74876.t1 AT2G02250 44.697 264 136 6 4 264 47 303 2.99e-69 216
MS.gene74876.t1 AT1G80110 46.565 262 132 5 4 264 1 255 4.27e-69 214
MS.gene74876.t1 AT2G02230 38.411 302 140 7 7 265 35 333 3.28e-64 204
MS.gene74876.t1 AT1G09155 41.935 279 141 7 7 265 3 280 7.60e-62 196
MS.gene74876.t1 AT2G02350 40.377 265 148 6 4 264 24 282 2.98e-59 190
MS.gene74876.t1 AT1G56250 42.294 279 140 7 7 265 4 281 9.77e-58 186
MS.gene74876.t1 AT1G56240 41.727 278 141 7 7 264 4 280 2.89e-57 184
MS.gene74876.t1 AT2G02320 40.602 266 142 7 6 264 42 298 4.76e-54 177
MS.gene74876.t1 AT2G02310 36.882 263 158 4 6 265 47 304 7.09e-54 177
MS.gene74876.t1 AT2G02300 37.778 270 138 8 4 265 34 281 1.95e-48 162
MS.gene74876.t1 AT5G24560 41.579 190 98 4 6 192 5 184 1.21e-41 142
MS.gene74876.t1 AT3G53000 27.698 278 170 8 4 264 21 284 3.38e-30 115
MS.gene74876.t1 AT2G02350 38.690 168 96 5 101 264 1 165 4.51e-30 111
MS.gene74876.t1 AT1G33920 31.844 179 90 6 96 265 9 164 7.45e-19 81.6
MS.gene74876.t1 AT3G61060 24.101 278 169 7 6 265 27 280 5.17e-18 82.0
MS.gene74876.t1 AT4G19850 32.967 182 90 8 94 265 59 218 7.90e-18 80.1
MS.gene74876.t1 AT4G19850 32.418 182 91 8 94 265 17 176 8.38e-18 79.0
MS.gene74876.t1 AT1G63090 29.557 203 121 6 4 189 26 223 3.76e-17 79.7
MS.gene74876.t1 AT3G61060 23.381 278 172 6 6 265 27 281 4.08e-17 79.7
MS.gene74876.t1 AT4G19840 31.176 170 96 5 99 265 94 245 6.13e-17 78.2
MS.gene74876.t1 AT1G12710 24.460 278 169 6 4 264 28 281 1.05e-16 78.6
MS.gene74876.t1 AT1G12710 30.000 160 106 3 4 160 28 184 2.55e-13 69.3
MS.gene74876.t1 AT5G52120 24.483 290 166 7 1 264 18 280 3.83e-13 68.2

Find 70 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCTGTATATTGAGTATT+TGG 0.131565 1.1:+58985537 None:intergenic
CTAGATCTCTTGCAATTGTT+TGG 0.246175 1.1:-58987108 MS.gene74876:CDS
AAAAGGAATGACAGAGATTC+AGG 0.277184 1.1:-58987538 None:intergenic
TAGATCTCTTGCAATTGTTT+GGG 0.285923 1.1:-58987107 MS.gene74876:CDS
TGGAGATAAAGGCTGGTAAT+TGG 0.287191 1.1:-58985263 MS.gene74876:CDS
AAGCTGTATATTGAGTATTT+GGG 0.314170 1.1:+58985538 None:intergenic
TTCTTGAAGGAATAGAAATT+AGG 0.317502 1.1:-58985227 MS.gene74876:CDS
CATCATCGATCATGATAATA+AGG 0.320160 1.1:-58987292 MS.gene74876:intron
GGATTCCTTTGCCTGATTCC+AGG 0.335609 1.1:-58987060 MS.gene74876:intron
TCAACAAGCTTATCAACTTC+AGG 0.340561 1.1:+58985609 None:intergenic
GATATTTCATCTATCATCTC+AGG 0.362347 1.1:-58987381 MS.gene74876:CDS
GATGAGTTTGTTGGAGATAA+AGG 0.363302 1.1:-58985274 MS.gene74876:CDS
ATACCTTCCACTTCCACATT+TGG 0.377228 1.1:+58985408 None:intergenic
TTTCAATTGGTTAGAAAGAG+TGG 0.401836 1.1:-58987154 MS.gene74876:CDS
CCTCCGATTCCGACGCTGTA+TGG 0.406897 1.1:-58987422 MS.gene74876:CDS
GCTGCTTAATTGTGTTACTT+AGG 0.411610 1.1:+58985204 None:intergenic
TAGTACTAAAATTGTCTGTT+TGG 0.420764 1.1:-58985433 MS.gene74876:CDS
GACAGAGATTCAGGATTTGC+CGG 0.423087 1.1:-58987529 MS.gene74876:CDS
AAGAGTGGTCTCTTTCTTGA+AGG 0.428845 1.1:-58985240 MS.gene74876:CDS
ATTCCATACAGCGTCGGAAT+CGG 0.440337 1.1:+58987419 None:intergenic
ATACTAAGCACTATTGGAAC+TGG 0.440686 1.1:-58987081 MS.gene74876:CDS
TGGAGTTGTACGAGAGACTA+TGG 0.442874 1.1:+58987491 None:intergenic
GGGTGGTTGGAGATTGAGAT+GGG 0.458032 1.1:-58985336 MS.gene74876:CDS
GGGGTGATACTAAGCACTAT+TGG 0.458105 1.1:-58987087 MS.gene74876:CDS
GCGCTAACTAACCTGGAATC+AGG 0.472883 1.1:+58987049 None:intergenic
AGAAGTCCTGATGAGTTTGT+TGG 0.481141 1.1:-58985283 MS.gene74876:CDS
ATGGCGGCAATGCATCCTTC+CGG 0.482859 1.1:+58987510 None:intergenic
CGTCCTAGTGTGAGAAGCGA+TGG 0.485861 1.1:-58985357 MS.gene74876:CDS
TTATCTCCAACAAACTCATC+AGG 0.495784 1.1:+58985277 None:intergenic
TTATCATGATCGATGATGAC+AGG 0.505190 1.1:+58987297 None:intergenic
GTAGGAGCGTTGGCGAGTAA+AGG 0.512124 1.1:+58987354 None:intergenic
AGTTTGTTGGAGATAAAGGC+TGG 0.513728 1.1:-58985270 MS.gene74876:CDS
TGGGTGGTTGGAGATTGAGA+TGG 0.517146 1.1:-58985337 MS.gene74876:CDS
GAGTCTCTGCCGGCGTCGAG+TGG 0.524622 1.1:+58987471 None:intergenic
CAACAAGCTTATCAACTTCA+GGG 0.526604 1.1:+58985610 None:intergenic
ATGCAGCATAACAGAGCAGT+AGG 0.534871 1.1:-58985387 MS.gene74876:CDS
CGTCGGAATCGGAGGCTGAT+CGG 0.538969 1.1:+58987430 None:intergenic
CACCCATCGCTTCTCACACT+AGG 0.543006 1.1:+58985354 None:intergenic
CCATACAGCGTCGGAATCGG+AGG 0.547740 1.1:+58987422 None:intergenic
AGATCTCTTGCAATTGTTTG+GGG 0.552612 1.1:-58987106 MS.gene74876:CDS
GAGATTCAGGATTTGCCGGA+AGG 0.560627 1.1:-58987525 MS.gene74876:CDS
GTTCAAAATGATTGATGCGT+GGG 0.567046 1.1:-58985508 MS.gene74876:CDS
TTTGGATCCAAATGTGGAAG+TGG 0.569537 1.1:-58985415 MS.gene74876:CDS
ATGATAGATGAAATATCAGA+AGG 0.573253 1.1:+58987387 None:intergenic
TGTGAGAAGCGATGGGTGGT+TGG 0.576323 1.1:-58985349 MS.gene74876:CDS
ATATTTCATCTATCATCTCA+GGG 0.577226 1.1:-58987380 MS.gene74876:CDS
GATCCAAATGTGGAAGTGGA+AGG 0.579730 1.1:-58985411 MS.gene74876:CDS
CGTCCTGTGGAGTTATCAGT+TGG 0.583128 1.1:-58985474 MS.gene74876:CDS
GTATGTTTGCTAGAAATTCG+TGG 0.589897 1.1:-58985585 MS.gene74876:CDS
AAGGCTGGTAATTGGAAGAG+TGG 0.592463 1.1:-58985255 MS.gene74876:CDS
GTGGTTGGAGATTGAGATGG+GGG 0.596500 1.1:-58985334 MS.gene74876:CDS
TTATCAGTTGGTGTCGAAGG+TGG 0.605148 1.1:-58985462 MS.gene74876:CDS
ACACCAACTGATAACTCCAC+AGG 0.607721 1.1:+58985471 None:intergenic
AGCTGTATATTGAGTATTTG+GGG 0.611231 1.1:+58985539 None:intergenic
AGAAACGACAGAGTCTCTGC+CGG 0.615620 1.1:+58987461 None:intergenic
GGTGGTTGGAGATTGAGATG+GGG 0.619250 1.1:-58985335 MS.gene74876:CDS
GAGTTATCAGTTGGTGTCGA+AGG 0.620810 1.1:-58985465 MS.gene74876:CDS
TGTCTGTTTGGATCCAAATG+TGG 0.625217 1.1:-58985421 MS.gene74876:CDS
ACTAACCTGGAATCAGGCAA+AGG 0.635048 1.1:+58987055 None:intergenic
GGGATTTCAGAACCGTCCTG+TGG 0.635758 1.1:-58985487 MS.gene74876:CDS
GTCCTAGTGTGAGAAGCGAT+GGG 0.643186 1.1:-58985356 MS.gene74876:CDS
TGTTCAAAATGATTGATGCG+TGG 0.644329 1.1:-58985509 MS.gene74876:CDS
TATCATGATCGATGATGACA+GGG 0.656082 1.1:+58987298 None:intergenic
TTCAAAATGATTGATGCGTG+GGG 0.672657 1.1:-58985507 MS.gene74876:CDS
AAAACGATTCCATACAGCGT+CGG 0.672667 1.1:+58987413 None:intergenic
AGTATTTGGGGACAGAACAA+CGG 0.674978 1.1:+58985551 None:intergenic
CTAGTGTGAGAAGCGATGGG+TGG 0.709944 1.1:-58985353 MS.gene74876:CDS
CAACTGATAACTCCACAGGA+CGG 0.710853 1.1:+58985475 None:intergenic
CGTACAACTCCACTCGACGC+CGG 0.717247 1.1:-58987480 MS.gene74876:CDS
AGTTGTACGAGAGACTATGG+CGG 0.789727 1.1:+58987494 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+AGG + chr1.1:58987027-58987008 None:intergenic 0.0%
!! ATTCAAAAAGAATAACAAAA+AGG - chr1.1:58985993-58986012 MS.gene74876:intron 15.0%
!! AATGGTATCTAGTATTAATT+AGG + chr1.1:58985767-58985786 None:intergenic 20.0%
!! ATTGAACATGCTTAAAATTT+GGG + chr1.1:58986162-58986181 None:intergenic 20.0%
!! GATGCATTCAAAAATATATA+GGG + chr1.1:58986414-58986433 None:intergenic 20.0%
!! TGATGCATTCAAAAATATAT+AGG + chr1.1:58986415-58986434 None:intergenic 20.0%
!! TTGTAAAGTAACAAACAAAT+TGG + chr1.1:58986463-58986482 None:intergenic 20.0%
!!! AAAACTCTGAAAATTTTTGA+AGG + chr1.1:58985578-58985597 None:intergenic 20.0%
!!! AAATTTTCAGAGTTTTCAAT+TGG - chr1.1:58985582-58985601 MS.gene74876:CDS 20.0%
!!! GTAAAATTTCTAAGAAAACA+TGG + chr1.1:58986652-58986671 None:intergenic 20.0%
!!! TAAGTTATATATGCCATTTT+AGG + chr1.1:58986881-58986900 None:intergenic 20.0%
!!! TGGTCAGATATTTTAAAATT+TGG + chr1.1:58986443-58986462 None:intergenic 20.0%
! AAGCTGTATATTGAGTATTT+GGG + chr1.1:58987214-58987233 None:intergenic 25.0%
! ATACCATATATCAAAATCCA+TGG - chr1.1:58986110-58986129 MS.gene74876:intron 25.0%
! ATATTTCATCTATCATCTCA+GGG - chr1.1:58985369-58985388 MS.gene74876:CDS 25.0%
! ATGATAGATGAAATATCAGA+AGG + chr1.1:58985365-58985384 None:intergenic 25.0%
! CATTCAAAAATATATAGGGT+CGG + chr1.1:58986410-58986429 None:intergenic 25.0%
! CTTAATATTCGAGAAATTGA+CGG + chr1.1:58985501-58985520 None:intergenic 25.0%
! GATTGAACATGCTTAAAATT+TGG + chr1.1:58986163-58986182 None:intergenic 25.0%
! TAAGCTGTATATTGAGTATT+TGG + chr1.1:58987215-58987234 None:intergenic 25.0%
! TAGTACTAAAATTGTCTGTT+TGG - chr1.1:58987316-58987335 MS.gene74876:CDS 25.0%
! TTCTTGAAGGAATAGAAATT+AGG - chr1.1:58987522-58987541 MS.gene74876:CDS 25.0%
!! CTTTGTTTGGTAAAAAATAG+TGG + chr1.1:58985897-58985916 None:intergenic 25.0%
!!! AAAAATAGTGGATAGTTGAT+AGG + chr1.1:58985885-58985904 None:intergenic 25.0%
!!! AAAGCCTTGTCATTTTTTAT+GGG - chr1.1:58985913-58985932 MS.gene74876:intron 25.0%
!!! ATGGATTTTGATATATGGTA+TGG + chr1.1:58986111-58986130 None:intergenic 25.0%
ACCTTATGCAAAAGATTGAA+TGG + chr1.1:58986708-58986727 None:intergenic 30.0%
AGCTGTATATTGAGTATTTG+GGG + chr1.1:58987213-58987232 None:intergenic 30.0%
AGTGATCAATTACTGATGAT+GGG - chr1.1:58985961-58985980 MS.gene74876:intron 30.0%
CATCATCGATCATGATAATA+AGG - chr1.1:58985457-58985476 MS.gene74876:CDS 30.0%
CGTCAATTTCTCGAATATTA+AGG - chr1.1:58985499-58985518 MS.gene74876:CDS 30.0%
GAATGTTGGATTTCCTAAAA+TGG - chr1.1:58986865-58986884 MS.gene74876:intron 30.0%
GATATTTCATCTATCATCTC+AGG - chr1.1:58985368-58985387 MS.gene74876:CDS 30.0%
GATCGTTAACTAAAAATTGC+AGG + chr1.1:58986965-58986984 None:intergenic 30.0%
GATTGTCACAAAATAAGAGT+TGG + chr1.1:58986747-58986766 None:intergenic 30.0%
TAGATCTCTTGCAATTGTTT+GGG - chr1.1:58985642-58985661 MS.gene74876:intron 30.0%
TAGTGATCAATTACTGATGA+TGG - chr1.1:58985960-58985979 MS.gene74876:intron 30.0%
TCAGTAATTGATCACTAACA+TGG + chr1.1:58985957-58985976 None:intergenic 30.0%
TTTCAATTGGTTAGAAAGAG+TGG - chr1.1:58985595-58985614 MS.gene74876:CDS 30.0%
! TCCTTTTAGGCTTTTAGTAT+GGG - chr1.1:58986835-58986854 MS.gene74876:intron 30.0%
!! AAAAATGACAAGGCTTTGTT+TGG + chr1.1:58985910-58985929 None:intergenic 30.0%
!! AGACAATTTTAGTACTACTC+TGG + chr1.1:58987313-58987332 None:intergenic 30.0%
!! TAGCCATGGATTTTGATATA+TGG + chr1.1:58986116-58986135 None:intergenic 30.0%
!! TTTGTGTACTACTTTTGAAC+AGG - chr1.1:58987114-58987133 MS.gene74876:CDS 30.0%
!!! AATTACTGATGATGGGTTTT+AGG - chr1.1:58985968-58985987 MS.gene74876:intron 30.0%
!!! AGATAGAGATCTTTTTTGGT+AGG + chr1.1:58985416-58985435 None:intergenic 30.0%
!!! AGCAAGATAGAGATCTTTTT+TGG + chr1.1:58985420-58985439 None:intergenic 30.0%
!!! ATTACTGATGATGGGTTTTA+GGG - chr1.1:58985969-58985988 MS.gene74876:intron 30.0%
!!! CAAAGCCTTGTCATTTTTTA+TGG - chr1.1:58985912-58985931 MS.gene74876:intron 30.0%
AACTTCATCCTTACACTATC+AGG - chr1.1:58986560-58986579 MS.gene74876:intron 35.0%
AATGGCCAAGGTAATTTGAT+GGG + chr1.1:58986690-58986709 None:intergenic 35.0%
AGATCTCTTGCAATTGTTTG+GGG - chr1.1:58985643-58985662 MS.gene74876:intron 35.0%
ATACTAAGCACTATTGGAAC+TGG - chr1.1:58985668-58985687 MS.gene74876:intron 35.0%
CAACAAGCTTATCAACTTCA+GGG + chr1.1:58987142-58987161 None:intergenic 35.0%
CAAGCCCATAAAAAATGACA+AGG + chr1.1:58985920-58985939 None:intergenic 35.0%
CACAAAATAAGAGTTGGAGT+TGG + chr1.1:58986741-58986760 None:intergenic 35.0%
CATCGATCATGATAATAAGG+TGG - chr1.1:58985460-58985479 MS.gene74876:CDS 35.0%
CCAACTATTCTTCACTAACT+TGG + chr1.1:58986076-58986095 None:intergenic 35.0%
CCAAGTTAGTGAAGAATAGT+TGG - chr1.1:58986073-58986092 MS.gene74876:intron 35.0%
CTAGATCTCTTGCAATTGTT+TGG - chr1.1:58985641-58985660 MS.gene74876:intron 35.0%
CTTACCAAAGAGACCTTAAT+CGG + chr1.1:58985815-58985834 None:intergenic 35.0%
GAAATCCCATCAAATTACCT+TGG - chr1.1:58986682-58986701 MS.gene74876:intron 35.0%
GATTAGAAGATGGCAAAAGT+CGG + chr1.1:58986054-58986073 None:intergenic 35.0%
GGTCGATAAATTAACAATGC+AGG + chr1.1:58986987-58987006 None:intergenic 35.0%
GTGCTTGCAAAAATTTCTGA+TGG - chr1.1:58986189-58986208 MS.gene74876:intron 35.0%
GTTCAAAATGATTGATGCGT+GGG - chr1.1:58987241-58987260 MS.gene74876:intron 35.0%
TACATGTAGCATCTTCAATG+TGG + chr1.1:58986628-58986647 None:intergenic 35.0%
TATCATGATCGATGATGACA+GGG + chr1.1:58985454-58985473 None:intergenic 35.0%
TATTCGAGAAATTGACGGTT+AGG + chr1.1:58985496-58985515 None:intergenic 35.0%
TCAACAAGCTTATCAACTTC+AGG + chr1.1:58987143-58987162 None:intergenic 35.0%
TCCAAATTCTCTAAGTCACA+AGG + chr1.1:58986215-58986234 None:intergenic 35.0%
TCCCATACTAAAAGCCTAAA+AGG + chr1.1:58986839-58986858 None:intergenic 35.0%
TGTTCAAAATGATTGATGCG+TGG - chr1.1:58987240-58987259 MS.gene74876:intron 35.0%
TTATCATGATCGATGATGAC+AGG + chr1.1:58985455-58985474 None:intergenic 35.0%
TTATCTCCAACAAACTCATC+AGG + chr1.1:58987475-58987494 None:intergenic 35.0%
TTCAAAATGATTGATGCGTG+GGG - chr1.1:58987242-58987261 MS.gene74876:intron 35.0%
! CACTAACTTGGATTAGAAGA+TGG + chr1.1:58986064-58986083 None:intergenic 35.0%
! GCCATTCAATCTTTTGCATA+AGG - chr1.1:58986704-58986723 MS.gene74876:intron 35.0%
! GTATGTTTGCTAGAAATTCG+TGG - chr1.1:58987164-58987183 MS.gene74876:intron 35.0%
! GTCCTTTTAGGCTTTTAGTA+TGG - chr1.1:58986834-58986853 MS.gene74876:intron 35.0%
! TTAGTGAAGAATAGTTGGTG+TGG - chr1.1:58986078-58986097 MS.gene74876:intron 35.0%
!! AATCAAACCAGTACCGATTA+AGG - chr1.1:58985799-58985818 MS.gene74876:intron 35.0%
!! GATGAGTTTGTTGGAGATAA+AGG - chr1.1:58987475-58987494 MS.gene74876:CDS 35.0%
!! TAATCGGTACTGGTTTGATT+CGG + chr1.1:58985799-58985818 None:intergenic 35.0%
!! TTGATTCGGTGAACAAGAAA+TGG + chr1.1:58985785-58985804 None:intergenic 35.0%
!!! TTTTTTGATCCTGATTGCTG+CGG - chr1.1:58986381-58986400 MS.gene74876:intron 35.0%
AAAACGATTCCATACAGCGT+CGG + chr1.1:58985339-58985358 None:intergenic 40.0%
AAAGAGACCTTAATCGGTAC+TGG + chr1.1:58985809-58985828 None:intergenic 40.0%
AACTGCAGAGTTACAGAAGA+AGG + chr1.1:58986339-58986358 None:intergenic 40.0%
AAGAGTGGTCTCTTTCTTGA+AGG - chr1.1:58987509-58987528 MS.gene74876:CDS 40.0%
AAGTTAAGCGCTAACTAACC+TGG + chr1.1:58985710-58985729 None:intergenic 40.0%
ACCCTAGTAAGCTTCTACAT+AGG + chr1.1:58986540-58986559 None:intergenic 40.0%
ACTTAGCTGAAGTGATATGG+AGG + chr1.1:58986245-58986264 None:intergenic 40.0%
AGAAGTCCTGATGAGTTTGT+TGG - chr1.1:58987466-58987485 MS.gene74876:CDS 40.0%
AGTATTTGGGGACAGAACAA+CGG + chr1.1:58987201-58987220 None:intergenic 40.0%
ATACCTTCCACTTCCACATT+TGG + chr1.1:58987344-58987363 None:intergenic 40.0%
CGGTTAATTCTTAGCAGATG+AGG + chr1.1:58986034-58986053 None:intergenic 40.0%
GAATGGCCAAGGTAATTTGA+TGG + chr1.1:58986691-58986710 None:intergenic 40.0%
GACACTTAGCTGAAGTGATA+TGG + chr1.1:58986248-58986267 None:intergenic 40.0%
GAGTTACAGAAGAAGGATCT+TGG + chr1.1:58986332-58986351 None:intergenic 40.0%
GCCTATGTAGAAGCTTACTA+GGG - chr1.1:58986536-58986555 MS.gene74876:intron 40.0%
GCCTTGTGACTTAGAGAATT+TGG - chr1.1:58986211-58986230 MS.gene74876:intron 40.0%
GTATGGGAGAAGATGAATGT+TGG - chr1.1:58986851-58986870 MS.gene74876:intron 40.0%
TACATAGGCCAGATAGTGTA+AGG + chr1.1:58986525-58986544 None:intergenic 40.0%
TCCTTAGTCCTTACACTATC+TGG - chr1.1:58986514-58986533 MS.gene74876:intron 40.0%
TGCAAAAGATTGAATGGCCA+AGG + chr1.1:58986702-58986721 None:intergenic 40.0%
TGGAGATAAAGGCTGGTAAT+TGG - chr1.1:58987486-58987505 MS.gene74876:CDS 40.0%
TGTCTGTTTGGATCCAAATG+TGG - chr1.1:58987328-58987347 MS.gene74876:CDS 40.0%
TTTGGATCCAAATGTGGAAG+TGG - chr1.1:58987334-58987353 MS.gene74876:CDS 40.0%
! AAAATTTGGGTTTGAACCCG+AGG + chr1.1:58986149-58986168 None:intergenic 40.0%
! AGAATAGTTGGTGTGGTGTT+AGG - chr1.1:58986085-58986104 MS.gene74876:intron 40.0%
! AGCAATGTCGATGTCCTTTT+AGG - chr1.1:58986822-58986841 MS.gene74876:intron 40.0%
! TACATAGGCCTGATAGTGTA+AGG + chr1.1:58986571-58986590 None:intergenic 40.0%
! TTTTGCAACCAACTTCAGCT+TGG - chr1.1:58986302-58986321 MS.gene74876:intron 40.0%
!! AGTACCGATTAAGGTCTCTT+TGG - chr1.1:58985808-58985827 MS.gene74876:intron 40.0%
!! AGTTTGTTGGAGATAAAGGC+TGG - chr1.1:58987479-58987498 MS.gene74876:CDS 40.0%
!! GTTGATAGGCTAGCTTATAG+CGG + chr1.1:58985871-58985890 None:intergenic 40.0%
!!! ATCTTTTTTGGTAGGAGCGT+TGG + chr1.1:58985408-58985427 None:intergenic 40.0%
AAGGCTGGTAATTGGAAGAG+TGG - chr1.1:58987494-58987513 MS.gene74876:CDS 45.0%
ACACCAACTGATAACTCCAC+AGG + chr1.1:58987281-58987300 None:intergenic 45.0%
ACACTTATCACGAGAACCTG+AGG - chr1.1:58986794-58986813 MS.gene74876:intron 45.0%
ACTAACCTGGAATCAGGCAA+AGG + chr1.1:58985697-58985716 None:intergenic 45.0%
AGTTGTACGAGAGACTATGG+CGG + chr1.1:58985258-58985277 None:intergenic 45.0%
ATGCAGCATAACAGAGCAGT+AGG - chr1.1:58987362-58987381 MS.gene74876:CDS 45.0%
CAACTGATAACTCCACAGGA+CGG + chr1.1:58987277-58987296 None:intergenic 45.0%
GACAGAGATTCAGGATTTGC+CGG - chr1.1:58985220-58985239 MS.gene74876:CDS 45.0%
GATCCAAATGTGGAAGTGGA+AGG - chr1.1:58987338-58987357 MS.gene74876:CDS 45.0%
GCCAGATAGTGTAAGGACTA+AGG + chr1.1:58986518-58986537 None:intergenic 45.0%
GGCCTAGTAAGCTTCTACAT+AGG + chr1.1:58986586-58986605 None:intergenic 45.0%
GGCCTATGTAGAAGCTTACT+AGG - chr1.1:58986535-58986554 MS.gene74876:intron 45.0%
GGGGTGATACTAAGCACTAT+TGG - chr1.1:58985662-58985681 MS.gene74876:intron 45.0%
TCAGGTTCTCGTGATAAGTG+TGG + chr1.1:58986795-58986814 None:intergenic 45.0%
TGGAGTTGTACGAGAGACTA+TGG + chr1.1:58985261-58985280 None:intergenic 45.0%
! ATTCCATACAGCGTCGGAAT+CGG + chr1.1:58985333-58985352 None:intergenic 45.0%
!! GAGTTATCAGTTGGTGTCGA+AGG - chr1.1:58987284-58987303 MS.gene74876:intron 45.0%
!! TTATCAGTTGGTGTCGAAGG+TGG - chr1.1:58987287-58987306 MS.gene74876:intron 45.0%
AGAAACGACAGAGTCTCTGC+CGG + chr1.1:58985291-58985310 None:intergenic 50.0%
AGCTTACTAGGCCACATGTG+TGG - chr1.1:58986593-58986612 MS.gene74876:intron 50.0%
ATGGGGGAGTTCTTCAGTTC+AGG - chr1.1:58987431-58987450 MS.gene74876:CDS 50.0%
CGTCCTGTGGAGTTATCAGT+TGG - chr1.1:58987275-58987294 MS.gene74876:intron 50.0%
GAGATTCAGGATTTGCCGGA+AGG - chr1.1:58985224-58985243 MS.gene74876:CDS 50.0%
GCGCTAACTAACCTGGAATC+AGG + chr1.1:58985703-58985722 None:intergenic 50.0%
GGATTCCTTTGCCTGATTCC+AGG - chr1.1:58985689-58985708 MS.gene74876:intron 50.0%
GGGTGGTTGGAGATTGAGAT+GGG - chr1.1:58987413-58987432 MS.gene74876:CDS 50.0%
GGTGGTTGGAGATTGAGATG+GGG - chr1.1:58987414-58987433 MS.gene74876:CDS 50.0%
GTCCTAGTGTGAGAAGCGAT+GGG - chr1.1:58987393-58987412 MS.gene74876:CDS 50.0%
GTGGTTGGAGATTGAGATGG+GGG - chr1.1:58987415-58987434 MS.gene74876:CDS 50.0%
TCGACATTGCTATGTGCCTC+AGG + chr1.1:58986813-58986832 None:intergenic 50.0%
TGGGTGGTTGGAGATTGAGA+TGG - chr1.1:58987412-58987431 MS.gene74876:CDS 50.0%
! ATTTGGGTTTGAACCCGAGG+TGG + chr1.1:58986146-58986165 None:intergenic 50.0%
ATGGCGGCAATGCATCCTTC+CGG + chr1.1:58985242-58985261 None:intergenic 55.0%
ATGGCTAGCAGCTACCACCT+CGG - chr1.1:58986129-58986148 MS.gene74876:intron 55.0%
CACCCATCGCTTCTCACACT+AGG + chr1.1:58987398-58987417 None:intergenic 55.0%
CGTCCTAGTGTGAGAAGCGA+TGG - chr1.1:58987392-58987411 MS.gene74876:CDS 55.0%
CTAGTGTGAGAAGCGATGGG+TGG - chr1.1:58987396-58987415 MS.gene74876:CDS 55.0%
GGATCCAGTGTCCACACATG+TGG + chr1.1:58986607-58986626 None:intergenic 55.0%
GGGATTTCAGAACCGTCCTG+TGG - chr1.1:58987262-58987281 MS.gene74876:intron 55.0%
TAGGCCACATGTGTGGACAC+TGG - chr1.1:58986600-58986619 MS.gene74876:intron 55.0%
TGTGAGAAGCGATGGGTGGT+TGG - chr1.1:58987400-58987419 MS.gene74876:CDS 55.0%
TTGGCGCTCCAAGCTGAAGT+TGG + chr1.1:58986313-58986332 None:intergenic 55.0%
!! GTAGGAGCGTTGGCGAGTAA+AGG + chr1.1:58985398-58985417 None:intergenic 55.0%
CCTCCGATTCCGACGCTGTA+TGG - chr1.1:58985327-58985346 MS.gene74876:CDS 60.0%
CGTACAACTCCACTCGACGC+CGG - chr1.1:58985269-58985288 MS.gene74876:CDS 60.0%
CGTCGGAATCGGAGGCTGAT+CGG + chr1.1:58985322-58985341 None:intergenic 60.0%
GAGGTGGTAGCTGCTAGCCA+TGG + chr1.1:58986130-58986149 None:intergenic 60.0%
TGGCTAGCAGCTACCACCTC+GGG - chr1.1:58986130-58986149 MS.gene74876:intron 60.0%
! CCATACAGCGTCGGAATCGG+AGG + chr1.1:58985330-58985349 None:intergenic 60.0%
! GGTCGGTTTCCGCAGCAATC+AGG + chr1.1:58986393-58986412 None:intergenic 60.0%
! GAGTCTCTGCCGGCGTCGAG+TGG + chr1.1:58985281-58985300 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 58985218 58987553 58985218 ID=MS.gene74876
chr1.1 mRNA 58985218 58987553 58985218 ID=MS.gene74876.t1;Parent=MS.gene74876
chr1.1 exon 58987293 58987553 58987293 ID=MS.gene74876.t1.exon1;Parent=MS.gene74876.t1
chr1.1 CDS 58987293 58987553 58987293 ID=cds.MS.gene74876.t1;Parent=MS.gene74876.t1
chr1.1 exon 58987061 58987179 58987061 ID=MS.gene74876.t1.exon2;Parent=MS.gene74876.t1
chr1.1 CDS 58987061 58987179 58987061 ID=cds.MS.gene74876.t1;Parent=MS.gene74876.t1
chr1.1 exon 58985218 58985635 58985218 ID=MS.gene74876.t1.exon3;Parent=MS.gene74876.t1
chr1.1 CDS 58985218 58985635 58985218 ID=cds.MS.gene74876.t1;Parent=MS.gene74876.t1
Gene Sequence

>MS.gene74876

ATGACAGAGATTCAGGATTTGCCGGAAGGATGCATTGCCGCCATAGTCTCTCGTACAACTCCACTCGACGCCGGCAGAGACTCTGTCGTTTCTAAGACTTTCCGATCAGCCTCCGATTCCGACGCTGTATGGAATCGTTTTCTACCTTCTGATATTTCATCTATCATCTCAGGGTCTCCTTTACTCGCCAACGCTCCTACCAAAAAAGATCTCTATCTTGCTCTATCTGATCGCCCTGTCATCATCGATCATGATAATAAGGTGGTATTCTTCTTCCTAACCGTCAATTTCTCGAATATTAAGGCTCATAATTGAATTGATTTTTTTAAGATGTTTAGTTCAGAATACGTTAACAAGCCTTCAAAAATTTTCAGAGTTTTCAATTGGTTAGAAAGAGTGGAAAAAAGTGTTACATGCTTTCTGCTAGATCTCTTGCAATTGTTTGGGGTGATACTAAGCACTATTGGAACTGGATTCCTTTGCCTGATTCCAGGTTAGTTAGCGCTTAACTTTTCTATATTTTTTCTTAATATATCTTGATTAACTCCTAATTAATACTAGATACCATTTCTTGTTCACCGAATCAAACCAGTACCGATTAAGGTCTCTTTGGTAAGATGCATATTTGAGTTTATAGCATAATAAGTCATCCGCTATAAGCTAGCCTATCAACTATCCACTATTTTTTACCAAACAAAGCCTTGTCATTTTTTATGGGCTTGAATGATTCTATTTGCCATGTTAGTGATCAATTACTGATGATGGGTTTTAGGGCATTCAAAAAGAATAACAAAAAGGTTGAATATGCTCTTTCCTCATCTGCTAAGAATTAACCGACTTTTGCCATCTTCTAATCCAAGTTAGTGAAGAATAGTTGGTGTGGTGTTAGGCCATACCATATATCAAAATCCATGGCTAGCAGCTACCACCTCGGGTTCAAACCCAAATTTTAAGCATGTTCAATCAAACAAGTGCTTGCAAAAATTTCTGATGGCCTTGTGACTTAGAGAATTTGGAGTCTGTTCCTCCATATCACTTCAGCTAAGTGTCAGCAACATGTATGCGTGCTCTTCATTCAACTATCTTTTGCAACCAACTTCAGCTTGGAGCGCCAAGATCCTTCTTCTGTAACTCTGCAGTTTTTGCTTCATCTGCAGACTTTCTTTTTTGATCCTGATTGCTGCGGAAACCGACCCTATATATTTTTGAATGCATCATTTTACCAAATTTTAAAATATCTGACCAATTTGTTTGTTACTTTACAACTAAAGACGTAGTTCTTATTTTAAGACTTCATCCTTAGTCCTTACACTATCTGGCCTATGTAGAAGCTTACTAGGGTAACTTCATCCTTACACTATCAGGCCTATGTAGAAGCTTACTAGGCCACATGTGTGGACACTGGATCCACATTGAAGATGCTACATGTAGCCATGTTTTCTTAGAAATTTTACTTTTTATCAAGAAATCCCATCAAATTACCTTGGCCATTCAATCTTTTGCATAAGGTTGTCATTTGTCCAACTCCAACTCTTATTTTGTGACAATCATGCAGTTGTCTATATTGCTTATATCCACACTTATCACGAGAACCTGAGGCACATAGCAATGTCGATGTCCTTTTAGGCTTTTAGTATGGGAGAAGATGAATGTTGGATTTCCTAAAATGGCATATATAACTTATTCACTAAGAAGTCTGTCATTTAGTTTCAGCTTGAAATACTTCAGTTATGCTTCGTAAAAGCCTGCAATTTTTAGTTAACGATCCTGCATTGTTAATTTATCGACCTTATATATATATATATATATATATATATATATATATATATATATATATATATATGTAATAAAACACTTTCAACTTTTCTCAGTTATTATGTTCTAATTTTTGCGTCTTTTGTGTACTACTTTTGAACAGGTTCCCTGAAGTTGATAAGCTTGTTGACGTATGTTTGCTAGAAATTCGTGGTGTGATAAACACCGTTGTTCTGTCCCCAAATACTCAATATACAGCTTATGTTGTGTTCAAAATGATTGATGCGTGGGGATTTCAGAACCGTCCTGTGGAGTTATCAGTTGGTGTCGAAGGTGGCCAGAGTAGTACTAAAATTGTCTGTTTGGATCCAAATGTGGAAGTGGAAGGTATGCAGCATAACAGAGCAGTAGGATTGCAACGTCCTAGTGTGAGAAGCGATGGGTGGTTGGAGATTGAGATGGGGGAGTTCTTCAGTTCAGGCATAGAAAATGAAGAAGTCCTGATGAGTTTGTTGGAGATAAAGGCTGGTAATTGGAAGAGTGGTCTCTTTCTTGAAGGAATAGAAATTAGGCCTAAGTAA

Protein sequence

>MS.gene74876.t1

MTEIQDLPEGCIAAIVSRTTPLDAGRDSVVSKTFRSASDSDAVWNRFLPSDISSIISGSPLLANAPTKKDLYLALSDRPVIIDHDNKSFQLVRKSGKKCYMLSARSLAIVWGDTKHYWNWIPLPDSRFPEVDKLVDVCLLEIRGVINTVVLSPNTQYTAYVVFKMIDAWGFQNRPVELSVGVEGGQSSTKIVCLDPNVEVEGMQHNRAVGLQRPSVRSDGWLEIEMGEFFSSGIENEEVLMSLLEIKAGNWKSGLFLEGIEIRPK