AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51487

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51487.t1 MTR_3g006850 92.105 304 22 2 1 303 13 315 0.0 556
MS.gene51487.t1 MTR_1g100597 64.120 301 78 6 3 303 2 272 3.13e-124 357
MS.gene51487.t1 MTR_1g079370 60.000 300 81 7 5 303 4 265 8.16e-113 327
MS.gene51487.t1 MTR_1g079180 61.000 300 78 6 5 303 4 265 1.17e-112 327
MS.gene51487.t1 MTR_1g079230 59.333 300 91 5 5 303 4 273 9.71e-110 320
MS.gene51487.t1 MTR_1g079260 58.086 303 93 7 3 303 2 272 2.46e-108 316
MS.gene51487.t1 MTR_1g079460 58.278 302 88 5 5 305 4 268 5.72e-107 313
MS.gene51487.t1 MTR_1g079850 58.882 304 98 6 3 303 2 281 5.27e-106 311
MS.gene51487.t1 MTR_1g079200 59.272 302 79 7 5 303 4 264 3.09e-104 305
MS.gene51487.t1 MTR_3g452600 56.106 303 88 6 5 305 10 269 3.43e-103 303
MS.gene51487.t1 MTR_1g100613 61.597 263 74 6 21 282 5 241 1.04e-97 288
MS.gene51487.t1 MTR_1g079380 58.000 300 87 7 5 303 4 265 6.59e-96 285
MS.gene51487.t1 MTR_1g026510 54.426 305 112 6 3 303 2 283 4.68e-95 283
MS.gene51487.t1 MTR_1g079250 55.410 305 104 6 3 303 2 278 3.82e-94 281
MS.gene51487.t1 MTR_3g450990 51.097 319 95 8 5 305 10 285 1.02e-88 267
MS.gene51487.t1 MTR_2g079100 52.649 302 90 10 4 300 8 261 6.65e-86 259
MS.gene51487.t1 MTR_1g079350 48.553 311 113 8 3 303 2 275 4.65e-81 247
MS.gene51487.t1 MTR_1g079410 45.631 309 121 8 2 303 5 273 1.65e-74 230
MS.gene51487.t1 MTR_1g079340 46.474 312 129 7 3 303 41 325 3.98e-73 228
MS.gene51487.t1 MTR_7g096300 50.505 297 96 9 3 293 2 253 7.88e-72 236
MS.gene51487.t1 MTR_1g079140 44.373 311 144 12 5 303 13 306 9.74e-65 206
MS.gene51487.t1 MTR_1g079400 40.065 307 143 8 2 303 9 279 1.86e-58 189
MS.gene51487.t1 MTR_1g076870 66.000 150 31 5 143 285 2 138 4.39e-58 183
MS.gene51487.t1 MTR_1g078470 49.048 210 68 4 94 303 14 184 4.20e-52 169
MS.gene51487.t1 MTR_7g112550 40.066 302 147 8 8 303 10 283 2.46e-51 171
MS.gene51487.t1 MTR_1g079350 56.494 154 50 3 3 152 2 142 1.49e-45 154
MS.gene51487.t1 MTR_1g083580 35.082 305 161 8 5 303 8 281 8.62e-44 151
MS.gene51487.t1 MTR_7g112560 33.893 298 151 9 8 303 4 257 7.95e-42 145
MS.gene51487.t1 MTR_1g079240 42.152 223 81 5 84 303 2 179 5.78e-41 140
MS.gene51487.t1 MTR_4g023570 32.781 302 137 9 8 307 4 241 3.57e-36 130
MS.gene51487.t1 MTR_7g096310 53.846 143 47 3 61 201 38 163 5.26e-36 127
MS.gene51487.t1 MTR_2g042540 64.762 105 34 2 4 107 3 105 1.27e-35 125
MS.gene51487.t1 MTR_3g058640 51.200 125 36 1 143 267 7 106 1.57e-32 116
MS.gene51487.t1 MTR_1g078460 67.045 88 26 1 4 91 66 150 1.54e-31 115
MS.gene51487.t1 MTR_1g079210 48.507 134 57 3 144 276 7 129 9.21e-29 107
MS.gene51487.t1 MTR_1g079130 38.424 203 107 7 105 303 1 189 2.00e-27 106
MS.gene51487.t1 MTR_0113s0040 27.103 214 127 6 2 201 19 217 2.89e-16 77.8
MS.gene51487.t1 MTR_7g103380 22.973 222 146 5 1 210 15 223 1.43e-14 73.2
MS.gene51487.t1 MTR_1g079220 44.318 88 24 2 180 267 1 63 5.63e-14 66.6
MS.gene51487.t1 MTR_0002s0020 25.439 228 138 7 1 210 18 231 2.29e-13 69.7
MS.gene51487.t1 MTR_1g101390 30.968 155 90 5 7 159 30 169 6.60e-13 68.2
MS.gene51487.t1 MTR_4g102770 29.936 157 94 4 7 161 21 163 1.02e-12 67.8
MS.gene51487.t1 MTR_1g079390 62.000 50 17 2 249 298 8 55 1.26e-11 59.3
MS.gene51487.t1 MTR_1g050352 54.930 71 26 2 27 95 46 112 1.27e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51487.t1 AT2G02360 36.513 304 142 8 3 302 12 268 8.16e-51 169
MS.gene51487.t1 AT1G80110 37.540 309 126 10 6 302 2 255 1.18e-48 163
MS.gene51487.t1 AT1G56250 38.944 303 153 10 8 303 4 281 4.30e-46 157
MS.gene51487.t1 AT2G02230 32.919 322 173 10 5 303 32 333 3.90e-45 156
MS.gene51487.t1 AT1G09155 37.217 309 150 11 8 303 3 280 8.44e-43 149
MS.gene51487.t1 AT2G02240 34.437 302 152 8 3 302 59 316 1.05e-42 149
MS.gene51487.t1 AT2G02350 33.553 304 155 9 3 302 22 282 1.45e-42 149
MS.gene51487.t1 AT1G56240 37.417 302 157 10 8 302 4 280 3.36e-42 147
MS.gene51487.t1 AT2G02340 33.333 309 156 10 3 302 34 301 5.03e-42 147
MS.gene51487.t1 AT2G02250 32.000 300 159 9 5 302 47 303 1.12e-39 141
MS.gene51487.t1 AT2G02310 31.803 305 161 10 3 303 43 304 1.71e-38 138
MS.gene51487.t1 AT2G02320 32.154 311 161 11 4 309 39 304 6.11e-35 129
MS.gene51487.t1 AT5G24560 37.129 202 96 7 5 201 3 178 3.60e-31 116
MS.gene51487.t1 AT2G02300 30.645 310 146 10 3 303 32 281 4.04e-29 113
MS.gene51487.t1 AT2G02350 30.233 172 89 5 135 302 21 165 8.72e-16 74.3
MS.gene51487.t1 AT3G53000 22.956 318 183 11 1 304 17 286 9.79e-15 73.9
MS.gene51487.t1 AT3G61060 27.742 155 95 5 7 159 27 166 6.24e-14 71.2
MS.gene51487.t1 AT1G63090 26.222 225 132 9 1 209 22 228 3.69e-13 68.9
MS.gene51487.t1 AT3G61060 25.806 155 99 4 7 159 27 167 5.10e-13 68.6
MS.gene51487.t1 AT1G12710 24.554 224 137 8 1 209 24 230 2.89e-12 66.6
MS.gene51487.t1 AT5G52120 24.336 226 138 7 4 210 20 231 1.24e-11 64.7

Find 81 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTCAGAGCTTTAAAT+TGG 0.211874 3.4:+2480723 MS.gene51487:intron
TCTTTATTGCGTGACGCGTT+TGG 0.271431 3.4:-2482183 None:intergenic
CTGCTGATTCCGACGCTGTT+TGG 0.274846 3.4:+2480435 MS.gene51487:CDS
AGCCGCATACCGAGTATTTC+GGG 0.278643 3.4:-2482052 None:intergenic
AGGCCTAAAGGTGGAAAATT+AGG 0.306982 3.4:+2482453 MS.gene51487:CDS
AATGAGTGTTGTCGAGAAAT+TGG 0.309455 3.4:+2482383 MS.gene51487:CDS
TGCCAACGCTCCCACCAAAA+AGG 0.326568 3.4:+2480520 MS.gene51487:CDS
TTGGAACCACTTTCTCCCTT+TGG 0.330062 3.4:+2480454 MS.gene51487:CDS
AGGCCATACCCGAGTGTAAT+AGG 0.331870 3.4:+2482273 MS.gene51487:CDS
CACCCATCGCTTCTCATACT+AGG 0.340594 3.4:-2482306 None:intergenic
ATTTCTCGACAACACTCATT+TGG 0.340801 3.4:-2482380 None:intergenic
AAGCCGCATACCGAGTATTT+CGG 0.344265 3.4:-2482053 None:intergenic
GCAAACAGTACGACGTTTGT+AGG 0.364009 3.4:-2482229 None:intergenic
CGACCATGATCGATGATGAT+TGG 0.368659 3.4:-2480569 None:intergenic
ATGCAAAGCTTAGCGACTTC+AGG 0.370688 3.4:-2481982 None:intergenic
AAGGGAAATTTCTTTCTTGA+AGG 0.378106 3.4:+2482420 MS.gene51487:CDS
TTCAAGATGATTGATGACTA+TGG 0.395723 3.4:+2482084 MS.gene51487:CDS
TAGCACTAAATCCGTCTGTT+TGG 0.402920 3.4:+2482158 MS.gene51487:CDS
TTCTTGAAGGAATAGAAGTT+AGG 0.408541 3.4:+2482433 MS.gene51487:CDS
GTGTTCTCGCTTAAAATTCG+TGG 0.423796 3.4:+2482006 MS.gene51487:CDS
GACCATGATCGATGATGATT+GGG 0.433866 3.4:-2480568 None:intergenic
GAGAGTCTGCAAACATCAAC+AGG 0.436594 3.4:-2480386 None:intergenic
GGATTCATATGAATGATTCC+AGG 0.439610 3.4:+2480863 MS.gene51487:CDS
ATGGCTGAGATGCATCCTTC+CGG 0.445419 3.4:-2480347 None:intergenic
GCAAATGTCCCGGTCCTAGA+TGG 0.460524 3.4:+2482250 MS.gene51487:CDS
CACCTTCTACATCAATTGAT+AGG 0.470721 3.4:-2482128 None:intergenic
CTCGGGTATGGCCTCCATCT+AGG 0.471641 3.4:-2482264 None:intergenic
TATCAGATAGAGCGAGATAG+AGG 0.473412 3.4:-2480544 None:intergenic
CGCCCTAGTATGAGAAGCGA+TGG 0.476146 3.4:+2482303 MS.gene51487:CDS
ATTGGAGAGTGGCAATAAGA+AGG 0.476949 3.4:+2482401 MS.gene51487:CDS
GACCTATCAATTGATGTAGA+AGG 0.477578 3.4:+2482126 MS.gene51487:CDS
CGCTGCAATCCTATTACACT+CGG 0.477809 3.4:-2482282 None:intergenic
TTGGAGAGTGGCAATAAGAA+GGG 0.493842 3.4:+2482402 MS.gene51487:CDS
GATGATAGAGTTAATGAGAC+GGG 0.495408 3.4:-2480480 None:intergenic
CTCACCATTCATTGCGGTGA+TGG 0.500991 3.4:+2480790 MS.gene51487:CDS
GCCACCATCACCGCAATGAA+TGG 0.504191 3.4:-2480794 None:intergenic
ACCCATCGCTTCTCATACTA+GGG 0.511060 3.4:-2482305 None:intergenic
ATTATGACATTGATAAAGAG+TGG 0.514642 3.4:+2480842 MS.gene51487:CDS
GTATGGCCTCCATCTAGGAC+CGG 0.515958 3.4:-2482259 None:intergenic
GGAATAGAAGTTAGGCCTAA+AGG 0.521180 3.4:+2482441 MS.gene51487:CDS
ACATCAATTGATAGGTCCAT+AGG 0.521400 3.4:-2482120 None:intergenic
AGCCCAATCATCATCGATCA+TGG 0.522783 3.4:+2480566 MS.gene51487:CDS
GTGGGAGCGTTGGCAAGGGA+AGG 0.528441 3.4:-2480512 None:intergenic
TGGGTGGTTGGAGATTGAGA+TGG 0.532103 3.4:+2482323 MS.gene51487:CDS
GAGTTCAATTCAAGACTTGA+AGG 0.533035 3.4:+2482348 MS.gene51487:CDS
TGGATTTGAGAATGAACCTA+TGG 0.540096 3.4:+2482104 MS.gene51487:CDS
GGGTGGTTGGAGATTGAGAT+GGG 0.540728 3.4:+2482324 MS.gene51487:CDS
TATGAGAAGCGATGGGTGGT+TGG 0.542058 3.4:+2482311 MS.gene51487:CDS
AATCCTATTACACTCGGGTA+TGG 0.542614 3.4:-2482276 None:intergenic
ACCATTCATTGCGGTGATGG+TGG 0.550353 3.4:+2480793 MS.gene51487:CDS
TTCAGAGCTTTAAATTGGAT+AGG 0.554237 3.4:+2480728 MS.gene51487:intron
CGTCGGAATCAGCAGCAGAA+AGG 0.559078 3.4:-2480427 None:intergenic
GGGAATCCAAAGGGAGAAAG+TGG 0.566909 3.4:-2480460 None:intergenic
TTTAAATTGGATAGGAAAAG+CGG 0.567617 3.4:+2480736 MS.gene51487:CDS
TTTCCTTGTCCCGAAATACT+CGG 0.571284 3.4:+2482043 MS.gene51487:CDS
AGGAGTCGTACGAGACAGAA+TGG 0.572229 3.4:-2480366 None:intergenic
AAGGAAAGTCTTAGAAACAA+GGG 0.585673 3.4:-2480408 None:intergenic
AAAGGAAAGTCTTAGAAACA+AGG 0.587344 3.4:-2480409 None:intergenic
TAATGAGACGGGAATCCAAA+GGG 0.591503 3.4:-2480469 None:intergenic
TTTGGTGGGAGCGTTGGCAA+GGG 0.595797 3.4:-2480516 None:intergenic
CATCATCGATCATGGTCGAA+AGG 0.598086 3.4:+2480574 MS.gene51487:CDS
AGATGATAGAGTTAATGAGA+CGG 0.608457 3.4:-2480481 None:intergenic
CGCGTTTGGATCCAAACAGA+CGG 0.612046 3.4:-2482169 None:intergenic
ATAAAGAAAGAACGTGCTCG+AGG 0.617489 3.4:+2482199 MS.gene51487:CDS
CGTACTGTTTGCAAATGTCC+CGG 0.619734 3.4:+2482240 MS.gene51487:CDS
TATGGCCTCCATCTAGGACC+GGG 0.622013 3.4:-2482258 None:intergenic
AGACGGATTTAGTGCTACAA+TGG 0.632435 3.4:-2482152 None:intergenic
GTCCCGAAATACTCGGTATG+CGG 0.633122 3.4:+2482050 MS.gene51487:CDS
ATCAGATAGAGCGAGATAGA+GGG 0.636487 3.4:-2480543 None:intergenic
ATAGAAGTTAGGCCTAAAGG+TGG 0.643863 3.4:+2482444 MS.gene51487:CDS
ATACCGAGTATTTCGGGACA+AGG 0.650354 3.4:-2482046 None:intergenic
AATGTCCCGGTCCTAGATGG+AGG 0.653167 3.4:+2482253 MS.gene51487:CDS
CTATCAATTGATGTAGAAGG+TGG 0.658482 3.4:+2482129 MS.gene51487:CDS
AAAGTGGTTCCAAACAGCGT+CGG 0.661385 3.4:-2480444 None:intergenic
TTAATGAGACGGGAATCCAA+AGG 0.670447 3.4:-2480470 None:intergenic
GCCCTAGTATGAGAAGCGAT+GGG 0.672039 3.4:+2482304 MS.gene51487:CDS
GTTGTCGAGAAATTGGAGAG+TGG 0.680092 3.4:+2482390 MS.gene51487:CDS
CTAGTATGAGAAGCGATGGG+TGG 0.686490 3.4:+2482307 MS.gene51487:CDS
GCTGCAATCCTATTACACTC+GGG 0.696916 3.4:-2482281 None:intergenic
AGATCTCTCACCATTCATTG+CGG 0.710070 3.4:+2480784 MS.gene51487:CDS
AGTGATGATAGTGATGATAG+CGG 0.780024 3.4:+2480817 MS.gene51487:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTAATCAATTGTTA+TGG + chr3.4:2480653-2480672 MS.gene51487:intron 10.0%
!! AAAAAAAAAAAAAACTAACC+TGG - chr3.4:2480884-2480903 None:intergenic 15.0%
!! CAAATATTGATATATTTAGA+GGG - chr3.4:2481062-2481081 None:intergenic 15.0%
!! TCAAATATTGATATATTTAG+AGG - chr3.4:2481063-2481082 None:intergenic 15.0%
!!! AAAACCTAAAAGAATATTTT+TGG - chr3.4:2481096-2481115 None:intergenic 15.0%
!!! AAAACCTAAGAAATATTTTA+GGG + chr3.4:2481209-2481228 MS.gene51487:intron 15.0%
!!! AAAATATTCTTTTAGGTTTT+TGG + chr3.4:2481096-2481115 MS.gene51487:intron 15.0%
!!! ATTTGTGAATCAATTTTTTA+TGG + chr3.4:2481291-2481310 MS.gene51487:intron 15.0%
!!! TTTGTGAATCAATTTTTTAT+GGG + chr3.4:2481292-2481311 MS.gene51487:intron 15.0%
!! AAATATTTATTTGCATAGTG+TGG + chr3.4:2481579-2481598 MS.gene51487:intron 20.0%
!! AACCTTTATGAATACTAAAT+TGG + chr3.4:2481018-2481037 MS.gene51487:intron 20.0%
!! ACCTTTATGAATACTAAATT+GGG + chr3.4:2481019-2481038 MS.gene51487:intron 20.0%
!! AGCTATCTATTAATGTTATA+TGG + chr3.4:2481537-2481556 MS.gene51487:intron 20.0%
!! ATAATAGTATCATTAACACA+AGG - chr3.4:2480909-2480928 None:intergenic 20.0%
!! ATCAAATGTTGGTATATTTA+AGG + chr3.4:2481240-2481259 MS.gene51487:intron 20.0%
!! CCTAATATTTAAGAAATTCA+CGG - chr3.4:2480615-2480634 None:intergenic 20.0%
!! TCAAATGTTGGTATATTTAA+GGG + chr3.4:2481241-2481260 MS.gene51487:intron 20.0%
!!! AAACCTAAGAAATATTTTAG+GGG + chr3.4:2481210-2481229 MS.gene51487:intron 20.0%
!!! AATTGATTCACAAATTTAGT+AGG - chr3.4:2481286-2481305 None:intergenic 20.0%
!!! ATTGATTCACAAATTTAGTA+GGG - chr3.4:2481285-2481304 None:intergenic 20.0%
!!! ATTTCATGGATGAAATTTTT+TGG - chr3.4:2481127-2481146 None:intergenic 20.0%
!!! CAAAACCTAAGAAATATTTT+AGG + chr3.4:2481208-2481227 MS.gene51487:intron 20.0%
! ACCCAATTTAGTATTCATAA+AGG - chr3.4:2481023-2481042 None:intergenic 25.0%
! ATTATGACATTGATAAAGAG+TGG + chr3.4:2480842-2480861 MS.gene51487:CDS 25.0%
! ATTCATGTGTAAGTTAACTT+TGG - chr3.4:2481717-2481736 None:intergenic 25.0%
! CAAATGTTGGTATATTTAAG+GGG + chr3.4:2481242-2481261 MS.gene51487:intron 25.0%
! CCGTGAATTTCTTAAATATT+AGG + chr3.4:2480612-2480631 MS.gene51487:intron 25.0%
! CTCTGAATTTCATATATTCA+AGG - chr3.4:2480715-2480734 None:intergenic 25.0%
! TAAAAGAGAATTATCAGAGA+GGG - chr3.4:2481766-2481785 None:intergenic 25.0%
! TAGAATTCTATTAGAAGACT+CGG - chr3.4:2481502-2481521 None:intergenic 25.0%
! TATGTTAATGAAGCCATATT+GGG - chr3.4:2480948-2480967 None:intergenic 25.0%
! TGTAGATACGATAATAATGT+AGG - chr3.4:2481871-2481890 None:intergenic 25.0%
! TTAAAAGAGAATTATCAGAG+AGG - chr3.4:2481767-2481786 None:intergenic 25.0%
! TTATGTTAATGAAGCCATAT+TGG - chr3.4:2480949-2480968 None:intergenic 25.0%
! TTCATGTGTAAGTTAACTTT+GGG - chr3.4:2481716-2481735 None:intergenic 25.0%
! TTGTCTTTGCAATTATTTAC+AGG + chr3.4:2481956-2481975 MS.gene51487:intron 25.0%
! TTTAAATTGGATAGGAAAAG+CGG + chr3.4:2480736-2480755 MS.gene51487:CDS 25.0%
!! AATTGGGTTAGATATGTAAT+TGG + chr3.4:2481035-2481054 MS.gene51487:intron 25.0%
!! CATAGATGAAATTTTCTGAA+GGG + chr3.4:2481183-2481202 MS.gene51487:intron 25.0%
!! TCATAGATGAAATTTTCTGA+AGG + chr3.4:2481182-2481201 MS.gene51487:intron 25.0%
!! TGCTCCAAAAATATTCTTTT+AGG + chr3.4:2481089-2481108 MS.gene51487:intron 25.0%
!! TTTTTCACATATATGTCTGT+TGG + chr3.4:2481327-2481346 MS.gene51487:intron 25.0%
!!! AACCTAAGAAATATTTTAGG+GGG + chr3.4:2481211-2481230 MS.gene51487:intron 25.0%
!!! ATTTTGAGAGAAGCTATATA+TGG - chr3.4:2481406-2481425 None:intergenic 25.0%
!!! GATTTTGAGACATTAATCTA+TGG - chr3.4:2481384-2481403 None:intergenic 25.0%
!!! TGAAATTCAGAGCTTTAAAT+TGG + chr3.4:2480723-2480742 MS.gene51487:intron 25.0%
AAAAGAGAATTATCAGAGAG+GGG - chr3.4:2481765-2481784 None:intergenic 30.0%
AAAGGAAAGTCTTAGAAACA+AGG - chr3.4:2480412-2480431 None:intergenic 30.0%
AAGGAAAGTCTTAGAAACAA+GGG - chr3.4:2480411-2480430 None:intergenic 30.0%
AAGGGAAATTTCTTTCTTGA+AGG + chr3.4:2482420-2482439 MS.gene51487:CDS 30.0%
AGAAATTCACGGTTATGAAA+AGG - chr3.4:2480604-2480623 None:intergenic 30.0%
AGATGATAGAGTTAATGAGA+CGG - chr3.4:2480484-2480503 None:intergenic 30.0%
ATATGGTTTGAGTGATAACA+TGG + chr3.4:2481437-2481456 MS.gene51487:intron 30.0%
GTATTATACTCCATATGTGA+TGG + chr3.4:2481894-2481913 MS.gene51487:intron 30.0%
TATGGTTTGAGTGATAACAT+GGG + chr3.4:2481438-2481457 MS.gene51487:intron 30.0%
TGAAGCTCAATATTAGTGAT+GGG + chr3.4:2481738-2481757 MS.gene51487:intron 30.0%
TTCTTGAAGGAATAGAAGTT+AGG + chr3.4:2482433-2482452 MS.gene51487:CDS 30.0%
! TTCAAGATGATTGATGACTA+TGG + chr3.4:2482084-2482103 MS.gene51487:CDS 30.0%
!! TTCAGAGCTTTAAATTGGAT+AGG + chr3.4:2480728-2480747 MS.gene51487:intron 30.0%
!!! CATATTGGGTTTTAAGTGAT+GGG - chr3.4:2480934-2480953 None:intergenic 30.0%
!!! TCATGGATGAAATTTTTTGG+AGG - chr3.4:2481124-2481143 None:intergenic 30.0%
ACATCAATTGATAGGTCCAT+AGG - chr3.4:2482123-2482142 None:intergenic 35.0%
ATTTCTCGACAACACTCATT+TGG - chr3.4:2482383-2482402 None:intergenic 35.0%
CAAAATGAGAAGGCTACATA+TGG + chr3.4:2481420-2481439 MS.gene51487:intron 35.0%
CACCTTCTACATCAATTGAT+AGG - chr3.4:2482131-2482150 None:intergenic 35.0%
CCATCACTTAAAACCCAATA+TGG + chr3.4:2480932-2480951 MS.gene51487:intron 35.0%
CTATCAATTGATGTAGAAGG+TGG + chr3.4:2482129-2482148 MS.gene51487:CDS 35.0%
CTGAAGCTCAATATTAGTGA+TGG + chr3.4:2481737-2481756 MS.gene51487:intron 35.0%
GACCTATCAATTGATGTAGA+AGG + chr3.4:2482126-2482145 MS.gene51487:CDS 35.0%
GAGTTCAATTCAAGACTTGA+AGG + chr3.4:2482348-2482367 MS.gene51487:CDS 35.0%
GATGATAGAGTTAATGAGAC+GGG - chr3.4:2480483-2480502 None:intergenic 35.0%
GGATTCATATGAATGATTCC+AGG + chr3.4:2480863-2480882 MS.gene51487:CDS 35.0%
GTCCCCCTAAAATATTTCTT+AGG - chr3.4:2481216-2481235 None:intergenic 35.0%
GTGATTCATACCATCACATA+TGG - chr3.4:2481907-2481926 None:intergenic 35.0%
TAGCTTCTCTCAAAATGAGA+AGG + chr3.4:2481410-2481429 MS.gene51487:intron 35.0%
TAGGCTCATCAACTAAAGTT+TGG - chr3.4:2481852-2481871 None:intergenic 35.0%
TGGATTTGAGAATGAACCTA+TGG + chr3.4:2482104-2482123 MS.gene51487:CDS 35.0%
! AATGAGTGTTGTCGAGAAAT+TGG + chr3.4:2482383-2482402 MS.gene51487:CDS 35.0%
! AGTGATGATAGTGATGATAG+CGG + chr3.4:2480817-2480836 MS.gene51487:CDS 35.0%
! GAAAGTTAGAAGCATGACAA+TGG - chr3.4:2481647-2481666 None:intergenic 35.0%
! TTGCCTAATTTTCCACCTTT+AGG - chr3.4:2482459-2482478 None:intergenic 35.0%
!!! CCATATTGGGTTTTAAGTGA+TGG - chr3.4:2480935-2480954 None:intergenic 35.0%
AATCCTATTACACTCGGGTA+TGG - chr3.4:2482279-2482298 None:intergenic 40.0%
ACTGCTCTACATTGAGAACA+GGG - chr3.4:2481154-2481173 None:intergenic 40.0%
AGATCTCTCACCATTCATTG+CGG + chr3.4:2480784-2480803 MS.gene51487:CDS 40.0%
AGGCCTAAAGGTGGAAAATT+AGG + chr3.4:2482453-2482472 MS.gene51487:CDS 40.0%
ATAAAGAAAGAACGTGCTCG+AGG + chr3.4:2482199-2482218 MS.gene51487:CDS 40.0%
ATAGAAGTTAGGCCTAAAGG+TGG + chr3.4:2482444-2482463 MS.gene51487:CDS 40.0%
ATCAGATAGAGCGAGATAGA+GGG - chr3.4:2480546-2480565 None:intergenic 40.0%
ATTGGAGAGTGGCAATAAGA+AGG + chr3.4:2482401-2482420 MS.gene51487:CDS 40.0%
CACATATATGTCTGTTGGCA+AGG + chr3.4:2481332-2481351 MS.gene51487:intron 40.0%
GACCATGATCGATGATGATT+GGG - chr3.4:2480571-2480590 None:intergenic 40.0%
GAGAACAGGGACTAATTTCA+TGG - chr3.4:2481141-2481160 None:intergenic 40.0%
GGAATAGAAGTTAGGCCTAA+AGG + chr3.4:2482441-2482460 MS.gene51487:CDS 40.0%
GGGGGACTAAAATCAAATGT+TGG + chr3.4:2481229-2481248 MS.gene51487:intron 40.0%
GTGTTCTCGCTTAAAATTCG+TGG + chr3.4:2482006-2482025 MS.gene51487:CDS 40.0%
TAATGAGACGGGAATCCAAA+GGG - chr3.4:2480472-2480491 None:intergenic 40.0%
TAGCACTAAATCCGTCTGTT+TGG + chr3.4:2482158-2482177 MS.gene51487:CDS 40.0%
TATCAGATAGAGCGAGATAG+AGG - chr3.4:2480547-2480566 None:intergenic 40.0%
TTAATGAGACGGGAATCCAA+AGG - chr3.4:2480473-2480492 None:intergenic 40.0%
TTCTATTAGAAGACTCGGCA+TGG - chr3.4:2481497-2481516 None:intergenic 40.0%
TTGGAGAGTGGCAATAAGAA+GGG + chr3.4:2482402-2482421 MS.gene51487:CDS 40.0%
TTTCCTTGTCCCGAAATACT+CGG + chr3.4:2482043-2482062 MS.gene51487:CDS 40.0%
! AGACGGATTTAGTGCTACAA+TGG - chr3.4:2482155-2482174 None:intergenic 40.0%
! GCTTTTGATGAATTTCCGGA+AGG + chr3.4:2480332-2480351 MS.gene51487:CDS 40.0%
! GGCAGAGCTACTCATATTTT+GGG + chr3.4:2481459-2481478 MS.gene51487:intron 40.0%
! GGCAGCTTTTGATGAATTTC+CGG + chr3.4:2480328-2480347 MS.gene51487:CDS 40.0%
!! AGAGCTACTCATATTTTGGG+AGG + chr3.4:2481462-2481481 MS.gene51487:intron 40.0%
!! AGCTACTCATATTTTGGGAG+GGG + chr3.4:2481464-2481483 MS.gene51487:intron 40.0%
!! GAGCTACTCATATTTTGGGA+GGG + chr3.4:2481463-2481482 MS.gene51487:intron 40.0%
AAAGTGGTTCCAAACAGCGT+CGG - chr3.4:2480447-2480466 None:intergenic 45.0%
AAGCCGCATACCGAGTATTT+CGG - chr3.4:2482056-2482075 None:intergenic 45.0%
ACCCATCGCTTCTCATACTA+GGG - chr3.4:2482308-2482327 None:intergenic 45.0%
AGCCCAATCATCATCGATCA+TGG + chr3.4:2480566-2480585 MS.gene51487:CDS 45.0%
ATACCGAGTATTTCGGGACA+AGG - chr3.4:2482049-2482068 None:intergenic 45.0%
ATGCAAAGCTTAGCGACTTC+AGG - chr3.4:2481985-2482004 None:intergenic 45.0%
CACTGCTCTACATTGAGAAC+AGG - chr3.4:2481155-2481174 None:intergenic 45.0%
CATCATCGATCATGGTCGAA+AGG + chr3.4:2480574-2480593 MS.gene51487:CDS 45.0%
CGACCATGATCGATGATGAT+TGG - chr3.4:2480572-2480591 None:intergenic 45.0%
CGCTGCAATCCTATTACACT+CGG - chr3.4:2482285-2482304 None:intergenic 45.0%
CGTACTGTTTGCAAATGTCC+CGG + chr3.4:2482240-2482259 MS.gene51487:CDS 45.0%
GAGAGTCTGCAAACATCAAC+AGG - chr3.4:2480389-2480408 None:intergenic 45.0%
GCAAACAGTACGACGTTTGT+AGG - chr3.4:2482232-2482251 None:intergenic 45.0%
GCTGCAATCCTATTACACTC+GGG - chr3.4:2482284-2482303 None:intergenic 45.0%
GTTGTCGAGAAATTGGAGAG+TGG + chr3.4:2482390-2482409 MS.gene51487:CDS 45.0%
TCTTTATTGCGTGACGCGTT+TGG - chr3.4:2482186-2482205 None:intergenic 45.0%
TTGGAACCACTTTCTCCCTT+TGG + chr3.4:2480454-2480473 MS.gene51487:CDS 45.0%
! GGGCAGAGCTACTCATATTT+TGG + chr3.4:2481458-2481477 MS.gene51487:intron 45.0%
!! AGATAGAGGGCCTTTTTGGT+GGG - chr3.4:2480533-2480552 None:intergenic 45.0%
!!! TATTTACTTATAATTTTTTT+TGG - chr3.4:2481672-2481691 None:intergenic 5.0%
AGCCGCATACCGAGTATTTC+GGG - chr3.4:2482055-2482074 None:intergenic 50.0%
AGGAGTCGTACGAGACAGAA+TGG - chr3.4:2480369-2480388 None:intergenic 50.0%
AGGCCATACCCGAGTGTAAT+AGG + chr3.4:2482273-2482292 MS.gene51487:CDS 50.0%
ATGGCTGAGATGCATCCTTC+CGG - chr3.4:2480350-2480369 None:intergenic 50.0%
CACCCATCGCTTCTCATACT+AGG - chr3.4:2482309-2482328 None:intergenic 50.0%
CGCGTTTGGATCCAAACAGA+CGG - chr3.4:2482172-2482191 None:intergenic 50.0%
CTAGTATGAGAAGCGATGGG+TGG + chr3.4:2482307-2482326 MS.gene51487:CDS 50.0%
CTCACCATTCATTGCGGTGA+TGG + chr3.4:2480790-2480809 MS.gene51487:CDS 50.0%
GCCCTAGTATGAGAAGCGAT+GGG + chr3.4:2482304-2482323 MS.gene51487:CDS 50.0%
GGGAATCCAAAGGGAGAAAG+TGG - chr3.4:2480463-2480482 None:intergenic 50.0%
GGGTGGTTGGAGATTGAGAT+GGG + chr3.4:2482324-2482343 MS.gene51487:CDS 50.0%
GTCCCGAAATACTCGGTATG+CGG + chr3.4:2482050-2482069 MS.gene51487:CDS 50.0%
TATGAGAAGCGATGGGTGGT+TGG + chr3.4:2482311-2482330 MS.gene51487:CDS 50.0%
TGGGTGGTTGGAGATTGAGA+TGG + chr3.4:2482323-2482342 MS.gene51487:CDS 50.0%
TTAGAAGACTCGGCATGGAC+AGG - chr3.4:2481492-2481511 None:intergenic 50.0%
! ACCATTCATTGCGGTGATGG+TGG + chr3.4:2480793-2480812 MS.gene51487:CDS 50.0%
! AGCGAGATAGAGGGCCTTTT+TGG - chr3.4:2480537-2480556 None:intergenic 50.0%
! GAGATAGAGGGCCTTTTTGG+TGG - chr3.4:2480534-2480553 None:intergenic 50.0%
AATGTCCCGGTCCTAGATGG+AGG + chr3.4:2482253-2482272 MS.gene51487:CDS 55.0%
CGCCCTAGTATGAGAAGCGA+TGG + chr3.4:2482303-2482322 MS.gene51487:CDS 55.0%
CGTCGGAATCAGCAGCAGAA+AGG - chr3.4:2480430-2480449 None:intergenic 55.0%
GCAAATGTCCCGGTCCTAGA+TGG + chr3.4:2482250-2482269 MS.gene51487:CDS 55.0%
GCCACCATCACCGCAATGAA+TGG - chr3.4:2480797-2480816 None:intergenic 55.0%
TGCCAACGCTCCCACCAAAA+AGG + chr3.4:2480520-2480539 MS.gene51487:CDS 55.0%
! GTATGGCCTCCATCTAGGAC+CGG - chr3.4:2482262-2482281 None:intergenic 55.0%
! TATGGCCTCCATCTAGGACC+GGG - chr3.4:2482261-2482280 None:intergenic 55.0%
!! CTGCTGATTCCGACGCTGTT+TGG + chr3.4:2480435-2480454 MS.gene51487:CDS 55.0%
!! TTTGGTGGGAGCGTTGGCAA+GGG - chr3.4:2480519-2480538 None:intergenic 55.0%
!!! TTTTGGTGGGAGCGTTGGCA+AGG - chr3.4:2480520-2480539 None:intergenic 55.0%
CTCGGGTATGGCCTCCATCT+AGG - chr3.4:2482267-2482286 None:intergenic 60.0%
!! GGCCTTTTTGGTGGGAGCGT+TGG - chr3.4:2480525-2480544 None:intergenic 60.0%
!! GTGGGAGCGTTGGCAAGGGA+AGG - chr3.4:2480515-2480534 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 2480323 2482488 2480323 ID=MS.gene51487
chr3.4 mRNA 2480323 2482488 2480323 ID=MS.gene51487.t1;Parent=MS.gene51487
chr3.4 exon 2480323 2480595 2480323 ID=MS.gene51487.t1.exon1;Parent=MS.gene51487.t1
chr3.4 CDS 2480323 2480595 2480323 ID=cds.MS.gene51487.t1;Parent=MS.gene51487.t1
chr3.4 exon 2480733 2480884 2480733 ID=MS.gene51487.t1.exon2;Parent=MS.gene51487.t1
chr3.4 CDS 2480733 2480884 2480733 ID=cds.MS.gene51487.t1;Parent=MS.gene51487.t1
chr3.4 exon 2481978 2482488 2481978 ID=MS.gene51487.t1.exon3;Parent=MS.gene51487.t1
chr3.4 CDS 2481978 2482488 2481978 ID=cds.MS.gene51487.t1;Parent=MS.gene51487.t1
Gene Sequence

>MS.gene51487

ATGGAGGCAGCTTTTGATGAATTTCCGGAAGGATGCATCTCAGCCATTCTGTCTCGTACGACTCCTGTTGATGTTTGCAGACTCTCCCTTGTTTCTAAGACTTTCCTTTCTGCTGCTGATTCCGACGCTGTTTGGAACCACTTTCTCCCTTTGGATTCCCGTCTCATTAACTCTATCATCTCACATTCTCCTTCCCTTGCCAACGCTCCCACCAAAAAGGCCCTCTATCTCGCTCTATCTGATAGCCCAATCATCATCGATCATGGTCGAAAGGTATTCCTTTTCATAACCGTGAATTTCTTAAATATTAGGCTTTATTTTAGAAAAAATTAATTTTTAATCAATTGTTATGGCTTATTGATTGAAGATGTTTTCGAAATGCTAATAAGCCTTGAATATATGAAATTCAGAGCTTTAAATTGGATAGGAAAAGCGGAAAAATATGTTACATGCTTGCTGCTAGATCTCTCACCATTCATTGCGGTGATGGTGGCAGTGATGATAGTGATGATAGCGGTGATTATGACATTGATAAAGAGTGGATTCATATGAATGATTCCAGGTTAGTTTTTTTTTTTTTTTTCCTTGTGTTAATGATACTATTATTTCCCATCACTTAAAACCCAATATGGCTTCATTAACATAATCAACAGTTCTTGTCAAAAAAAAAAAAAAAAACATAATCAACAGTTCTAAACCTTTATGAATACTAAATTGGGTTAGATATGTAATTGGTCCCTCTAAATATATCAATATTTGATTTTAGTGCTCCAAAAATATTCTTTTAGGTTTTTGGTTCCTCCAAAAAATTTCATCCATGAAATTAGTCCCTGTTCTCAATGTAGAGCAGTGACTAATTTCATAGATGAAATTTTCTGAAGGGAACAAAACCTAAGAAATATTTTAGGGGGACTAAAATCAAATGTTGGTATATTTAAGGGGACTATTTACTTATTTAACCCTACTAAATTTGTGAATCAATTTTTTATGGGCTTGAATTATTCTTTTTCACATATATGTCTGTTGGCAAGGAAATTTTCTGCAACTTTTAAATCATGCCATAGATTAATGTCTCAAAATCCATATATAGCTTCTCTCAAAATGAGAAGGCTACATATGGTTTGAGTGATAACATGGGCAGAGCTACTCATATTTTGGGAGGGGCTCCTGTCCATGCCGAGTCTTCTAATAGAATTCTAGTATATAATATATAGAGCTATCTATTAATGTTATATGGACAATTATGATAGTCTAATAAATATTTATTTGCATAGTGTGGAGTATTAATGATACATATATTGTATTTTTGTTAAAATATTTTCCATTGTCATGCTTCTAACTTTCTTCCAAAAAAAATTATAAGTAAATACTTCTCGCTAGACTATTCAAACCCAAAGTTAACTTACACATGAATCTGAAGCTCAATATTAGTGATGGGTCCCCTCTCTGATAATTCTCTTTTAATAGATAATAAACAATATAACTTATTAATTGAGAAGTTTCTCAATATGCTTCGTTTACAACTTCCAAACTTTAGTTGATGAGCCTACATTATTATCGTATCTACACTTGTATTATACTCCATATGTGATGGTATGAATCACTTTCATCTTTTTTCAAAATTCTTGTATTCTTGTCTTTGCAATTATTTACAGGTTTCCTGAAGTCGCTAAGCTTTGCATTGTGTTCTCGCTTAAAATTCGTGGAGTGATCAACACTTTTTCCTTGTCCCGAAATACTCGGTATGCGGCTTATCTTGTGTTCAAGATGATTGATGACTATGGATTTGAGAATGAACCTATGGACCTATCAATTGATGTAGAAGGTGGCCATTGTAGCACTAAATCCGTCTGTTTGGATCCAAACGCGTCACGCAATAAAGAAAGAACGTGCTCGAGGAATCACTCCTACAAACGTCGTACTGTTTGCAAATGTCCCGGTCCTAGATGGAGGCCATACCCGAGTGTAATAGGATTGCAGCGCCCTAGTATGAGAAGCGATGGGTGGTTGGAGATTGAGATGGGAGAGTTCAATTCAAGACTTGAAGGAGAAAAAGTCCAAATGAGTGTTGTCGAGAAATTGGAGAGTGGCAATAAGAAGGGAAATTTCTTTCTTGAAGGAATAGAAGTTAGGCCTAAAGGTGGAAAATTAGGCAATATTCATTGA
Protein sequence

>MS.gene51487.t1

MEAAFDEFPEGCISAILSRTTPVDVCRLSLVSKTFLSAADSDAVWNHFLPLDSRLINSIISHSPSLANAPTKKALYLALSDSPIIIDHGRKSFKLDRKSGKICYMLAARSLTIHCGDGGSDDSDDSGDYDIDKEWIHMNDSRFPEVAKLCIVFSLKIRGVINTFSLSRNTRYAAYLVFKMIDDYGFENEPMDLSIDVEGGHCSTKSVCLDPNASRNKERTCSRNHSYKRRTVCKCPGPRWRPYPSVIGLQRPSMRSDGWLEIEMGEFNSRLEGEKVQMSVVEKLESGNKKGNFFLEGIEVRPKGGKLGNIH