AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068736

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068736.t1 MTR_2g079100 81.852 270 36 2 2 269 3 261 1.16e-162 452
MS.gene068736.t1 MTR_3g452600 74.349 269 62 2 2 270 4 265 1.26e-138 391
MS.gene068736.t1 MTR_3g450990 64.808 287 74 4 2 270 4 281 1.63e-119 343
MS.gene068736.t1 MTR_1g079370 60.294 272 97 3 5 272 1 265 1.15e-109 318
MS.gene068736.t1 MTR_1g079460 62.593 270 89 4 8 272 4 266 1.35e-107 313
MS.gene068736.t1 MTR_1g079180 60.448 268 103 2 5 272 1 265 3.99e-106 309
MS.gene068736.t1 MTR_3g006850 56.209 306 99 4 2 272 10 315 1.63e-105 309
MS.gene068736.t1 MTR_1g100597 59.786 281 91 7 5 272 1 272 7.79e-105 306
MS.gene068736.t1 MTR_1g079200 57.664 274 100 5 5 272 1 264 1.26e-100 295
MS.gene068736.t1 MTR_1g079260 58.633 278 99 4 5 272 1 272 2.44e-99 292
MS.gene068736.t1 MTR_1g079380 60.741 270 95 3 5 270 1 263 7.02e-99 291
MS.gene068736.t1 MTR_1g079230 55.957 277 103 6 8 272 4 273 2.42e-97 287
MS.gene068736.t1 MTR_1g079850 56.184 283 103 4 7 272 3 281 1.04e-94 280
MS.gene068736.t1 MTR_1g079250 56.475 278 111 5 5 272 1 278 7.33e-93 276
MS.gene068736.t1 MTR_1g100613 60.656 244 82 4 24 256 5 245 1.64e-90 268
MS.gene068736.t1 MTR_1g026510 53.873 284 110 6 5 270 1 281 2.18e-89 268
MS.gene068736.t1 MTR_1g079350 51.971 279 119 7 5 272 1 275 1.17e-82 249
MS.gene068736.t1 MTR_1g079410 50.883 283 118 8 1 272 1 273 3.76e-82 248
MS.gene068736.t1 MTR_7g096300 56.225 249 95 6 9 253 5 243 5.06e-74 240
MS.gene068736.t1 MTR_1g079340 48.264 288 129 6 2 270 37 323 3.30e-72 224
MS.gene068736.t1 MTR_1g079400 42.509 287 126 4 8 273 12 280 1.73e-62 198
MS.gene068736.t1 MTR_1g079140 40.000 300 137 7 10 273 15 307 3.38e-60 193
MS.gene068736.t1 MTR_7g112550 38.214 280 153 6 7 270 6 281 3.42e-50 167
MS.gene068736.t1 MTR_1g078470 53.801 171 74 3 100 270 17 182 3.56e-50 163
MS.gene068736.t1 MTR_1g076870 60.000 135 38 1 135 253 2 136 2.64e-49 159
MS.gene068736.t1 MTR_1g079350 60.000 135 48 2 5 135 1 133 6.59e-47 156
MS.gene068736.t1 MTR_3g058640 73.394 109 24 3 130 236 1 106 1.02e-46 152
MS.gene068736.t1 MTR_1g083580 34.783 276 167 5 8 272 8 281 2.22e-46 157
MS.gene068736.t1 MTR_1g079240 50.847 177 76 4 94 270 12 177 5.08e-44 147
MS.gene068736.t1 MTR_7g112560 34.082 267 166 5 8 273 1 258 9.39e-41 142
MS.gene068736.t1 MTR_4g023570 35.055 271 138 8 8 273 1 238 3.57e-40 139
MS.gene068736.t1 MTR_2g042540 63.208 106 36 2 7 111 3 106 5.12e-36 125
MS.gene068736.t1 MTR_1g079210 54.472 123 44 2 136 246 7 129 4.62e-33 118
MS.gene068736.t1 MTR_7g096310 50.000 138 57 3 62 189 24 159 1.83e-30 112
MS.gene068736.t1 MTR_1g078460 63.043 92 31 1 3 94 62 150 1.21e-29 109
MS.gene068736.t1 MTR_1g079130 34.921 189 99 3 108 272 1 189 1.87e-25 100
MS.gene068736.t1 MTR_1g079220 53.623 69 28 2 172 239 1 66 7.92e-15 68.2
MS.gene068736.t1 MTR_7g103380 22.183 284 191 7 7 272 18 289 1.26e-14 72.8
MS.gene068736.t1 MTR_1g079390 64.000 50 16 2 218 267 8 55 2.50e-13 63.5
MS.gene068736.t1 MTR_4g102770 28.378 148 101 3 8 153 19 163 1.58e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068736.t1 AT1G80110 41.264 269 137 9 8 270 1 254 1.86e-52 172
MS.gene068736.t1 AT2G02360 37.037 270 147 8 8 270 14 267 1.29e-50 167
MS.gene068736.t1 AT2G02340 36.803 269 160 5 8 270 36 300 2.65e-48 162
MS.gene068736.t1 AT1G09155 38.732 284 146 9 11 272 3 280 4.83e-48 161
MS.gene068736.t1 AT1G56240 37.143 280 152 8 11 270 4 279 2.01e-45 154
MS.gene068736.t1 AT2G02250 37.594 266 153 9 8 270 47 302 5.76e-45 154
MS.gene068736.t1 AT2G02350 34.082 267 163 7 8 270 24 281 1.47e-43 150
MS.gene068736.t1 AT1G56250 36.042 283 157 8 11 273 4 282 2.06e-43 149
MS.gene068736.t1 AT2G02230 32.484 314 155 9 4 270 28 331 5.85e-43 149
MS.gene068736.t1 AT2G02240 37.218 266 147 8 11 270 64 315 1.80e-42 148
MS.gene068736.t1 AT2G02320 33.948 271 160 8 7 270 39 297 1.01e-40 143
MS.gene068736.t1 AT2G02310 32.463 268 170 6 8 272 45 304 2.80e-39 139
MS.gene068736.t1 AT2G02300 32.727 275 150 9 7 272 33 281 8.76e-32 119
MS.gene068736.t1 AT5G24560 43.357 143 75 2 10 152 5 141 3.71e-30 112
MS.gene068736.t1 AT2G02350 31.973 147 94 3 127 270 21 164 3.54e-17 77.8
MS.gene068736.t1 AT3G53000 28.571 147 102 2 7 153 20 163 9.52e-16 75.9
MS.gene068736.t1 AT3G61060 21.250 240 167 6 2 225 20 253 1.65e-12 66.6
MS.gene068736.t1 AT3G61060 21.667 240 165 7 2 225 20 252 2.96e-12 65.9

Find 70 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCATTGTCGATGATGATA+TGG 0.272388 2.3:+18835494 None:intergenic
CATCATCGACAATGGTAAAA+AGG 0.276610 2.3:-18835488 MS.gene068736:intron
TAAACCGCGTACTGAGTATT+TGG 0.293036 2.3:+18833990 None:intergenic
AAGCATTAAATCTGTTTGTT+TGG 0.314597 2.3:-18833886 MS.gene068736:CDS
GGATTCCTATGCATGATTCT+AGG 0.328000 2.3:-18834758 MS.gene068736:intron
GTTCTCCAGAGGAGTGGTTA+TGG 0.363521 2.3:-18833720 MS.gene068736:CDS
TTCTCCAGAGGAGTGGTTAT+GGG 0.374782 2.3:-18833719 MS.gene068736:CDS
AGAGAAAGCTTAGCAACTTC+AGG 0.374941 2.3:+18834062 None:intergenic
TACGGACTTCTTCATCTTTG+AGG 0.382370 2.3:+18833748 None:intergenic
TGCCGCCAATACTCCAAGTT+TGG 0.397082 2.3:+18833861 None:intergenic
AACGGAGATTTGTTTATTGA+AGG 0.403743 2.3:-18833693 MS.gene068736:CDS
AGAAGTTAGGAATAGAAGTT+AGG 0.414787 2.3:-18833667 None:intergenic
TTATTGAAGGAATAGAAGTT+AGG 0.418249 2.3:-18833680 MS.gene068736:CDS
GAGAGCAATTGAGGAATTGC+CGG 0.421392 2.3:-18835734 MS.gene068736:CDS
TGGATCCAAACTTGGAGTAT+TGG 0.437987 2.3:-18833866 MS.gene068736:CDS
TAATAGTCCCACGAATTTCA+TGG 0.438485 2.3:+18834030 None:intergenic
ATCCCATACGGTGTCTGAAT+CGG 0.445136 2.3:+18835624 None:intergenic
AGGAGTGGTTATGGGATTAA+CGG 0.449676 2.3:-18833711 MS.gene068736:CDS
TGTTTGTTTGGATCCAAACT+TGG 0.453402 2.3:-18833874 MS.gene068736:CDS
CAAACGATTGAGAGCAATTG+AGG 0.473901 2.3:-18835743 MS.gene068736:CDS
ATTGCGGCGATGCATCCTTC+CGG 0.474633 2.3:+18835715 None:intergenic
TCGTTCTCCCATGAAATTCG+TGG 0.477967 2.3:-18834038 MS.gene068736:CDS
TTCAAGATAATCTATGCCTA+TGG 0.482024 2.3:-18833960 MS.gene068736:CDS
CGTTCTCCCATGAAATTCGT+GGG 0.483373 2.3:-18834037 MS.gene068736:CDS
CAGCCGATTCAGACACCGTA+TGG 0.486804 2.3:-18835627 MS.gene068736:CDS
TGCTTAAATGTTGGTGTCGA+TGG 0.490783 2.3:-18833918 MS.gene068736:CDS
AAACAGATTTAATGCTTCTA+CGG 0.494107 2.3:+18833892 None:intergenic
ATTGAATGTCGGTGTGTGTA+TGG 0.498414 2.3:-18834792 MS.gene068736:CDS
ATACACACACCGACATTCAA+TGG 0.499460 2.3:+18834794 None:intergenic
CAACTCCCGTCGACGCTGGC+AGG 0.503986 2.3:-18835681 MS.gene068736:CDS
CGTCCTACTGTGAGAAGTGA+TGG 0.505305 2.3:-18833810 MS.gene068736:CDS
ACTTGGAGTATTGGCGGCAG+CGG 0.509726 2.3:-18833857 MS.gene068736:CDS
TAATCCCATAACCACTCCTC+TGG 0.511429 2.3:+18833715 None:intergenic
TAGAGTTTATACCTTGAGGA+TGG 0.513208 2.3:+18835587 None:intergenic
GAGAGCCTGCCAGCGTCGAC+GGG 0.516241 2.3:+18835676 None:intergenic
AGAGAGCCTGCCAGCGTCGA+CGG 0.518925 2.3:+18835675 None:intergenic
GGGTGGTTGGAGATCGAGAT+GGG 0.521226 2.3:-18833789 MS.gene068736:CDS
ATCCAAACTTGGAGTATTGG+CGG 0.523611 2.3:-18833863 MS.gene068736:CDS
AATAGTCCCACGAATTTCAT+GGG 0.525853 2.3:+18834031 None:intergenic
TTCTCGTAGGAGCATTTGCA+CGG 0.525879 2.3:+18835545 None:intergenic
GGGTTCGTTCTTGTATCCAT+AGG 0.539507 2.3:+18833944 None:intergenic
ATGATAGAGTTTATACCTTG+AGG 0.566862 2.3:+18835583 None:intergenic
AGAGTTTATACCTTGAGGAT+GGG 0.570269 2.3:+18835588 None:intergenic
GTGTGTATGGTTCGAAAGAG+TGG 0.572947 2.3:-18834779 MS.gene068736:CDS
CAGCGGCACTACAACAAAGA+AGG 0.573641 2.3:-18833840 MS.gene068736:CDS
TTTCTGACTTCCCATCCTCA+AGG 0.581042 2.3:-18835598 MS.gene068736:CDS
TGGGTGGTTGGAGATCGAGA+TGG 0.585691 2.3:-18833790 MS.gene068736:CDS
TCCTCTGGAGAACACTCATA+CGG 0.591098 2.3:+18833730 None:intergenic
TTTCAATTGCACAGAAAGAG+TGG 0.591235 2.3:-18834852 MS.gene068736:CDS
TGTGAGAAGTGATGGGTGGT+TGG 0.592083 2.3:-18833802 MS.gene068736:CDS
CATACAACTCCCGTCGACGC+TGG 0.593376 2.3:-18835685 MS.gene068736:CDS
AGTCAGAAAACGATCCCATA+CGG 0.602665 2.3:+18835612 None:intergenic
GACACCAACATTTAAGCACA+CGG 0.612053 2.3:+18833923 None:intergenic
TGCCATATCATCATCGACAA+TGG 0.620692 2.3:-18835496 MS.gene068736:CDS
AGCCGATTCAGACACCGTAT+GGG 0.632248 2.3:-18835626 MS.gene068736:CDS
ACTAACCTAGAATCATGCAT+AGG 0.637939 2.3:+18834753 None:intergenic
GTAGGAGCATTTGCACGGGA+AGG 0.639415 2.3:+18835550 None:intergenic
GATCTCTCACCATTGAATGT+CGG 0.645274 2.3:-18834803 MS.gene068736:CDS
GCAATTGAGGAATTGCCGGA+AGG 0.652012 2.3:-18835730 MS.gene068736:CDS
CACCCATCACTTCTCACAGT+AGG 0.653347 2.3:+18833807 None:intergenic
GTCTCCAAATACTCAGTACG+CGG 0.653862 2.3:-18833994 MS.gene068736:CDS
GTACTGAGTATTTGGAGACA+AGG 0.657611 2.3:+18833998 None:intergenic
ATGAGTGTTCTCCAGAGGAG+TGG 0.659164 2.3:-18833726 MS.gene068736:CDS
ACACCAACATTTAAGCACAC+GGG 0.659869 2.3:+18833924 None:intergenic
TCCGTATGAGTGTTCTCCAG+AGG 0.661519 2.3:-18833731 MS.gene068736:CDS
TCTCGTAGGAGCATTTGCAC+GGG 0.664381 2.3:+18835546 None:intergenic
GTCCTACTGTGAGAAGTGAT+GGG 0.673838 2.3:-18833809 MS.gene068736:CDS
GAACCCGTGTGCTTAAATGT+TGG 0.701348 2.3:-18833927 MS.gene068736:CDS
CTACTGTGAGAAGTGATGGG+TGG 0.716180 2.3:-18833806 MS.gene068736:CDS
AGTTGTATGAGAGAGTATTG+CGG 0.764694 2.3:+18835699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTATAGTTAATTTTAATTT+GGG + chr2.3:18835126-18835145 None:intergenic 10.0%
!!! ATTCATTTTTTACTAAAAAA+TGG - chr2.3:18834078-18834097 MS.gene068736:intron 10.0%
!! AGAGTTAATTAAGTTAATTA+AGG + chr2.3:18834880-18834899 None:intergenic 15.0%
!! TAATATTAATCTAAACTGTT+AGG - chr2.3:18834904-18834923 MS.gene068736:intron 15.0%
!!! GAGTATAGTTAATTTTAATT+TGG + chr2.3:18835127-18835146 None:intergenic 15.0%
!! AATTAAGTTAATTAAGGCAT+TGG + chr2.3:18834874-18834893 None:intergenic 20.0%
!! TAATACTTCATTAATTCAGT+TGG + chr2.3:18834832-18834851 None:intergenic 20.0%
!! TACCAATTTCTTGAATATTA+GGG - chr2.3:18833965-18833984 MS.gene068736:CDS 20.0%
!! TGAATCATACAATAATAAAC+TGG + chr2.3:18834063-18834082 None:intergenic 20.0%
!! TGTTAAAAATTTCCAGTTTA+TGG - chr2.3:18834742-18834761 MS.gene068736:intron 20.0%
!!! GATTTTGAGACATTTATATA+TGG + chr2.3:18835079-18835098 None:intergenic 20.0%
!!! TTTATTTCCTATCTTTTGAT+TGG - chr2.3:18834985-18835004 MS.gene068736:intron 20.0%
!!! TTTTGCACAATTTTTTTTAC+AGG - chr2.3:18835328-18835347 MS.gene068736:intron 20.0%
! AAACAGATTTAATGCTTCTA+CGG + chr2.3:18835527-18835546 None:intergenic 25.0%
! AAGCATTAAATCTGTTTGTT+TGG - chr2.3:18835530-18835549 MS.gene068736:CDS 25.0%
! AGTTCATCATATAATCAGTT+AGG - chr2.3:18835238-18835257 MS.gene068736:intron 25.0%
! CTACCAATTTCTTGAATATT+AGG - chr2.3:18833964-18833983 MS.gene068736:CDS 25.0%
! TATAAAGAATTATCAGACAG+TGG + chr2.3:18835185-18835204 None:intergenic 25.0%
! TGAATAGTCTAACAAGTATT+TGG + chr2.3:18835101-18835120 None:intergenic 25.0%
! TTAAACCAATTAAGTGTGAT+CGG + chr2.3:18834250-18834269 None:intergenic 25.0%
! TTATTGAAGGAATAGAAGTT+AGG - chr2.3:18835736-18835755 MS.gene068736:CDS 25.0%
!!! AGAACGAAAAGTTTTAGAAA+TGG + chr2.3:18833768-18833787 None:intergenic 25.0%
AACAAGACCAATCAAAAGAT+AGG + chr2.3:18834995-18835014 None:intergenic 30.0%
AGCCCTAATATTCAAGAAAT+TGG + chr2.3:18833970-18833989 None:intergenic 30.0%
ATGATAGAGTTTATACCTTG+AGG + chr2.3:18833836-18833855 None:intergenic 30.0%
ATGGTGAATACTGAATACAT+AGG - chr2.3:18834761-18834780 MS.gene068736:CDS 30.0%
ATTCAGTATTCACCATAAAC+TGG + chr2.3:18834757-18834776 None:intergenic 30.0%
TGAGACATTTATATATGGCA+TGG + chr2.3:18835074-18835093 None:intergenic 30.0%
TGGGTAAATTTCCTTAATGA+GGG + chr2.3:18835019-18835038 None:intergenic 30.0%
TGGTGAATACTGAATACATA+GGG - chr2.3:18834762-18834781 MS.gene068736:CDS 30.0%
TTCAAGATAATCTATGCCTA+TGG - chr2.3:18835456-18835475 MS.gene068736:intron 30.0%
! AACGGAGATTTGTTTATTGA+AGG - chr2.3:18835723-18835742 MS.gene068736:CDS 30.0%
! AACTTGTTTATAGCGTGTTT+GGG - chr2.3:18834133-18834152 MS.gene068736:intron 30.0%
!! AAGTTAATTAAGGCATTGGA+TGG + chr2.3:18834870-18834889 None:intergenic 30.0%
!! GTATTGATGTGTTTTTGTCT+AGG - chr2.3:18834349-18834368 MS.gene068736:intron 30.0%
!!! ATCGCACTCAACATTTTTTA+TGG - chr2.3:18834951-18834970 MS.gene068736:intron 30.0%
!!! TCGCACTCAACATTTTTTAT+GGG - chr2.3:18834952-18834971 MS.gene068736:intron 30.0%
AAGATGTGTGTTTGGATTGA+AGG + chr2.3:18834325-18834344 None:intergenic 35.0%
AATAGTCCCACGAATTTCAT+GGG + chr2.3:18835388-18835407 None:intergenic 35.0%
ACTAACCTAGAATCATGCAT+AGG + chr2.3:18834666-18834685 None:intergenic 35.0%
AGAGTTTATACCTTGAGGAT+GGG + chr2.3:18833831-18833850 None:intergenic 35.0%
ATACACCAAAGATGTGTGTT+TGG + chr2.3:18834333-18834352 None:intergenic 35.0%
ATACCTCAATATCAGCTTGA+TGG - chr2.3:18835155-18835174 MS.gene068736:intron 35.0%
ATAGTCCGATCACACTTAAT+TGG - chr2.3:18834242-18834261 MS.gene068736:intron 35.0%
ATCAAGCTGATATTGAGGTA+TGG + chr2.3:18835156-18835175 None:intergenic 35.0%
CATCATCGACAATGGTAAAA+AGG - chr2.3:18833928-18833947 MS.gene068736:CDS 35.0%
CTGGGTAAATTTCCTTAATG+AGG + chr2.3:18835020-18835039 None:intergenic 35.0%
GGGTAAATTTCCTTAATGAG+GGG + chr2.3:18835018-18835037 None:intergenic 35.0%
TAATAGTCCCACGAATTTCA+TGG + chr2.3:18835389-18835408 None:intergenic 35.0%
TACCATTGTCGATGATGATA+TGG + chr2.3:18833925-18833944 None:intergenic 35.0%
TAGAGTTTATACCTTGAGGA+TGG + chr2.3:18833832-18833851 None:intergenic 35.0%
TCAATCCAAACACACATCTT+TGG - chr2.3:18834325-18834344 MS.gene068736:intron 35.0%
TGATATTGAGGTATGGATTC+AGG + chr2.3:18835149-18835168 None:intergenic 35.0%
TGTTTGTTTGGATCCAAACT+TGG - chr2.3:18835542-18835561 MS.gene068736:CDS 35.0%
TTTCAATTGCACAGAAAGAG+TGG - chr2.3:18834564-18834583 MS.gene068736:intron 35.0%
! CAACTTGTTTATAGCGTGTT+TGG - chr2.3:18834132-18834151 MS.gene068736:intron 35.0%
!! AGTTGTATGAGAGAGTATTG+CGG + chr2.3:18833720-18833739 None:intergenic 35.0%
!! TTAAGGCATTGGATGGTAAT+AGG + chr2.3:18834863-18834882 None:intergenic 35.0%
ACACCAACATTTAAGCACAC+GGG + chr2.3:18835495-18835514 None:intergenic 40.0%
AGAGAAAGCTTAGCAACTTC+AGG + chr2.3:18835357-18835376 None:intergenic 40.0%
AGGAGTGGTTATGGGATTAA+CGG - chr2.3:18835705-18835724 MS.gene068736:CDS 40.0%
AGTACAAGACATACCGAGAA+AGG + chr2.3:18834414-18834433 None:intergenic 40.0%
AGTCAGAAAACGATCCCATA+CGG + chr2.3:18833807-18833826 None:intergenic 40.0%
ATACACACACCGACATTCAA+TGG + chr2.3:18834625-18834644 None:intergenic 40.0%
ATTGAATGTCGGTGTGTGTA+TGG - chr2.3:18834624-18834643 MS.gene068736:intron 40.0%
CAAACGATTGAGAGCAATTG+AGG - chr2.3:18833673-18833692 MS.gene068736:CDS 40.0%
GACACCAACATTTAAGCACA+CGG + chr2.3:18835496-18835515 None:intergenic 40.0%
GATCTCTCACCATTGAATGT+CGG - chr2.3:18834613-18834632 MS.gene068736:intron 40.0%
GGATTCCTATGCATGATTCT+AGG - chr2.3:18834658-18834677 MS.gene068736:intron 40.0%
GTACAAGACATACCGAGAAA+GGG + chr2.3:18834413-18834432 None:intergenic 40.0%
GTACTGAGTATTTGGAGACA+AGG + chr2.3:18835421-18835440 None:intergenic 40.0%
TAAACCGCGTACTGAGTATT+TGG + chr2.3:18835429-18835448 None:intergenic 40.0%
TACGGACTTCTTCATCTTTG+AGG + chr2.3:18835671-18835690 None:intergenic 40.0%
TGCCATATCATCATCGACAA+TGG - chr2.3:18833920-18833939 MS.gene068736:CDS 40.0%
TGGATCCAAACTTGGAGTAT+TGG - chr2.3:18835550-18835569 MS.gene068736:CDS 40.0%
TGTGTTTGGATTGAAGGCTT+AGG + chr2.3:18834319-18834338 None:intergenic 40.0%
TTCTCGGTATGTCTTGTACT+TGG - chr2.3:18834414-18834433 MS.gene068736:intron 40.0%
! AGATAGAGAGCTTTTCTCGT+AGG + chr2.3:18833887-18833906 None:intergenic 40.0%
! TTTCTTTTCCCTCCCTTTCT+CGG - chr2.3:18834398-18834417 MS.gene068736:intron 40.0%
!! ATCCAAACTTGGAGTATTGG+CGG - chr2.3:18835553-18835572 MS.gene068736:CDS 40.0%
!! TGCTTAAATGTTGGTGTCGA+TGG - chr2.3:18835498-18835517 MS.gene068736:CDS 40.0%
AAGACATACCGAGAAAGGGA+GGG + chr2.3:18834409-18834428 None:intergenic 45.0%
ACACCACATTTAGCAGCAAC+TGG + chr2.3:18835039-18835058 None:intergenic 45.0%
ATCCCATACGGTGTCTGAAT+CGG + chr2.3:18833795-18833814 None:intergenic 45.0%
CAAAAACGACACAAGACTGC+AGG + chr2.3:18834031-18834050 None:intergenic 45.0%
CACCACATTTAGCAGCAACT+GGG + chr2.3:18835038-18835057 None:intergenic 45.0%
CCACCATCAAGCTGATATTG+AGG + chr2.3:18835161-18835180 None:intergenic 45.0%
CCCCACACACTAAAATGTCA+CGG - chr2.3:18834806-18834825 MS.gene068736:CDS 45.0%
CCTCAATATCAGCTTGATGG+TGG - chr2.3:18835158-18835177 MS.gene068736:intron 45.0%
CGTTCTCCCATGAAATTCGT+GGG - chr2.3:18835379-18835398 MS.gene068736:intron 45.0%
CTGAATACATAGGGAATCCG+AGG - chr2.3:18834771-18834790 MS.gene068736:CDS 45.0%
GAACCCGTGTGCTTAAATGT+TGG - chr2.3:18835489-18835508 MS.gene068736:CDS 45.0%
GAGAGCAATTGAGGAATTGC+CGG - chr2.3:18833682-18833701 MS.gene068736:CDS 45.0%
GGGTTCGTTCTTGTATCCAT+AGG + chr2.3:18835475-18835494 None:intergenic 45.0%
GTCCTACTGTGAGAAGTGAT+GGG - chr2.3:18835607-18835626 MS.gene068736:CDS 45.0%
GTCTCCAAATACTCAGTACG+CGG - chr2.3:18835422-18835441 MS.gene068736:intron 45.0%
GTGTGTATGGTTCGAAAGAG+TGG - chr2.3:18834637-18834656 MS.gene068736:intron 45.0%
TAATCCCATAACCACTCCTC+TGG + chr2.3:18835704-18835723 None:intergenic 45.0%
TACCCAGTTGCTGCTAAATG+TGG - chr2.3:18835033-18835052 MS.gene068736:intron 45.0%
TCGTTCTCCCATGAAATTCG+TGG - chr2.3:18835378-18835397 MS.gene068736:intron 45.0%
TTCTCCAGAGGAGTGGTTAT+GGG - chr2.3:18835697-18835716 MS.gene068736:CDS 45.0%
TTTCTGACTTCCCATCCTCA+AGG - chr2.3:18833818-18833837 MS.gene068736:CDS 45.0%
! TCCTCTGGAGAACACTCATA+CGG + chr2.3:18835689-18835708 None:intergenic 45.0%
!! ACATTTTAGTGTGTGGGGTC+GGG + chr2.3:18834804-18834823 None:intergenic 45.0%
!! CCGTGACATTTTAGTGTGTG+GGG + chr2.3:18834809-18834828 None:intergenic 45.0%
!! GACATTTTAGTGTGTGGGGT+CGG + chr2.3:18834805-18834824 None:intergenic 45.0%
!! GCCGTGACATTTTAGTGTGT+GGG + chr2.3:18834810-18834829 None:intergenic 45.0%
!! TGGTCTTGTTCCCCTCATTA+AGG - chr2.3:18835005-18835024 MS.gene068736:intron 45.0%
!! TTCTCGTAGGAGCATTTGCA+CGG + chr2.3:18833874-18833893 None:intergenic 45.0%
!!! TTTTAAAAAATATCAAAATA+TGG + chr2.3:18834181-18834200 None:intergenic 5.0%
ATGAGTGTTCTCCAGAGGAG+TGG - chr2.3:18835690-18835709 MS.gene068736:CDS 50.0%
CAAGACATACCGAGAAAGGG+AGG + chr2.3:18834410-18834429 None:intergenic 50.0%
CACCCATCACTTCTCACAGT+AGG + chr2.3:18835612-18835631 None:intergenic 50.0%
CAGCGGCACTACAACAAAGA+AGG - chr2.3:18835576-18835595 MS.gene068736:CDS 50.0%
CGTCCTACTGTGAGAAGTGA+TGG - chr2.3:18835606-18835625 MS.gene068736:CDS 50.0%
GCAATTGAGGAATTGCCGGA+AGG - chr2.3:18833686-18833705 MS.gene068736:CDS 50.0%
GTTCTCCAGAGGAGTGGTTA+TGG - chr2.3:18835696-18835715 MS.gene068736:CDS 50.0%
TCCGTATGAGTGTTCTCCAG+AGG - chr2.3:18835685-18835704 MS.gene068736:CDS 50.0%
TGCCGCCAATACTCCAAGTT+TGG + chr2.3:18835558-18835577 None:intergenic 50.0%
! AGCCGATTCAGACACCGTAT+GGG - chr2.3:18833790-18833809 MS.gene068736:CDS 50.0%
! CTACTGTGAGAAGTGATGGG+TGG - chr2.3:18835610-18835629 MS.gene068736:CDS 50.0%
!! CATTTTAGTGTGTGGGGTCG+GGG + chr2.3:18834803-18834822 None:intergenic 50.0%
!! GGCCGTGACATTTTAGTGTG+TGG + chr2.3:18834811-18834830 None:intergenic 50.0%
!! TCTCGTAGGAGCATTTGCAC+GGG + chr2.3:18833873-18833892 None:intergenic 50.0%
!! TGTGAGAAGTGATGGGTGGT+TGG - chr2.3:18835614-18835633 MS.gene068736:CDS 50.0%
AACGACACAAGACTGCAGGC+CGG + chr2.3:18834027-18834046 None:intergenic 55.0%
ATTGCGGCGATGCATCCTTC+CGG + chr2.3:18833704-18833723 None:intergenic 55.0%
GGGTGGTTGGAGATCGAGAT+GGG - chr2.3:18835627-18835646 MS.gene068736:CDS 55.0%
TGGGTGGTTGGAGATCGAGA+TGG - chr2.3:18835626-18835645 MS.gene068736:CDS 55.0%
! CAGCCGATTCAGACACCGTA+TGG - chr2.3:18833789-18833808 MS.gene068736:CDS 55.0%
!! ACTTGGAGTATTGGCGGCAG+CGG - chr2.3:18835559-18835578 MS.gene068736:CDS 55.0%
!! GTAGGAGCATTTGCACGGGA+AGG + chr2.3:18833869-18833888 None:intergenic 55.0%
CATACAACTCCCGTCGACGC+TGG - chr2.3:18833731-18833750 MS.gene068736:CDS 60.0%
TTTCCTGTGATCCCCCGCTC+CGG - chr2.3:18834005-18834024 MS.gene068736:CDS 60.0%
ACAAGACTGCAGGCCGGAGC+GGG + chr2.3:18834021-18834040 None:intergenic 65.0%
CACAAGACTGCAGGCCGGAG+CGG + chr2.3:18834022-18834041 None:intergenic 65.0%
TGGGGTCGGGGTTCGAACCT+CGG + chr2.3:18834791-18834810 None:intergenic 65.0%
! AGAGAGCCTGCCAGCGTCGA+CGG + chr2.3:18833744-18833763 None:intergenic 65.0%
AAGACTGCAGGCCGGAGCGG+GGG + chr2.3:18834019-18834038 None:intergenic 70.0%
CAACTCCCGTCGACGCTGGC+AGG - chr2.3:18833735-18833754 MS.gene068736:CDS 70.0%
CAAGACTGCAGGCCGGAGCG+GGG + chr2.3:18834020-18834039 None:intergenic 70.0%
!! GAGAGCCTGCCAGCGTCGAC+GGG + chr2.3:18833743-18833762 None:intergenic 70.0%
AGGCCGGAGCGGGGGATCAC+AGG + chr2.3:18834011-18834030 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 18833668 18835770 18833668 ID=MS.gene068736
chr2.3 mRNA 18833668 18835770 18833668 ID=MS.gene068736.t1;Parent=MS.gene068736
chr2.3 exon 18835489 18835770 18835489 ID=MS.gene068736.t1.exon1;Parent=MS.gene068736.t1
chr2.3 CDS 18835489 18835770 18835489 ID=cds.MS.gene068736.t1;Parent=MS.gene068736.t1
chr2.3 exon 18834759 18834877 18834759 ID=MS.gene068736.t1.exon2;Parent=MS.gene068736.t1
chr2.3 CDS 18834759 18834877 18834759 ID=cds.MS.gene068736.t1;Parent=MS.gene068736.t1
chr2.3 exon 18833668 18834088 18833668 ID=MS.gene068736.t1.exon3;Parent=MS.gene068736.t1
chr2.3 CDS 18833668 18834088 18833668 ID=cds.MS.gene068736.t1;Parent=MS.gene068736.t1
Gene Sequence

>MS.gene068736

ATGAGCAAACGATTGAGAGCAATTGAGGAATTGCCGGAAGGATGCATCGCCGCAATACTCTCTCATACAACTCCCGTCGACGCTGGCAGGCTCTCTGCCATTTCTAAAACTTTTCGTTCTGCAGCCGATTCAGACACCGTATGGGATCGTTTTCTGACTTCCCATCCTCAAGGTATAAACTCTATCATCTCAGATTCTCCTTCCCGTGCAAATGCTCCTACGAGAAAAGCTCTCTATCTTGCTCTATCTGATTGCCATATCATCATCGACAATGGTAAAAAGGTATTCTTCATTATCTACCAATTTCTTGAATATTAGGGCTTGTTGTTTAGCATTGTTTCCTGTGATCCCCCGCTCCGGCCTGCAGTCTTGTGTCGTTTTTGTCTGCTATACCAGTTTATTATTGTATGATTCATTTTTTACTAAAAAATGGTAAATATTATGTGAGAGATTCATATTAGACGCAACTTGTTTATAGCGTGTTTGGGTTGAAGCGTTTACGAGAGAAGTCCATATTTTGATATTTTTTAAAAAAAAAAACAACTAAAAGAACATCATGAATAATAATCATATAATAGTCCGATCACACTTAATTGGTTTAAAGTTTTTTCTAGAATCAGTAATTTAAAGAAAAATAAATTTCATGCTCCTAAGCCTTCAATCCAAACACACATCTTTGGTGTATTGATGTGTTTTTGTCTAGGTTATCTGCTAGTGTAGTGCTTTCGTATTTCTTTTCCCTCCCTTTCTCGGTATGTCTTGTACTTGGAAGCGAATGTTATTTATATTATTGTTTGTTAAACAAAATAATCAAAACACAAGAAGTGCAAACATTAAAAGAATAAAATGCTTAGTTCTAAATGCTAATAGCAATTGTATATGTTGAAATGCAGAGCTTTCAATTGCACAGAAAGAGTGGACAAAAATGCTACATGCTTGCTGTTAGATCTCTCACCATTGAATGTCGGTGTGTGTATGGTTCGAAAGAGTGGATTCCTATGCATGATTCTAGGTTAGTTCTTTAGTTTTCTATTTGTATTTTTTTCGTGTTTTGTTTTTGTCAAATAGTTTAATTGTTAAAAATTTCCAGTTTATGGTGAATACTGAATACATAGGGAATCCGAGGTTCGAACCCCGACCCCACACACTAAAATGTCACGGCCAACTGAATTAATGAAGTATTACATTATTTCCTATTACCATCCAATGCCTTAATTAACTTAATTAACTCTTAATTAATATTAATCTAAACTGTTAGGAATACTAAATATGTGAATCAATGCATCGCACTCAACATTTTTTATGGGCTTGAATGATTTTATTTCCTATCTTTTGATTGGTCTTGTTCCCCTCATTAAGGAAATTTACCCAGTTGCTGCTAAATGTGGTGTTCTACATCTAGACCATGCCATATATAAATGTCTCAAAATCCAAATACTTGTTAGACTATTCAATCCCAAATTAAAATTAACTATACTCCTGAATCCATACCTCAATATCAGCTTGATGGTGGTCCACTGTCTGATAATTCTTTATATTGATAGCAAACAATATAATCATAATACTGAGAAGTTCATCATATAATCAGTTAGGCTTGAAATAATTTAGTTATACATTTTCAACTTTTTTTCTCTGTTCTTGTATTCTTATCTTTGCAACTTTTTGCACAATTTTTTTTACAGGTTTCCTGAAGTTGCTAAGCTTTCTCTTTCGTTCTCCCATGAAATTCGTGGGACTATTAACACTCTTTCCTTGTCTCCAAATACTCAGTACGCGGTTTATCTCGTGTTCAAGATAATCTATGCCTATGGATACAAGAACGAACCCGTGTGCTTAAATGTTGGTGTCGATGGTGACCGTAGAAGCATTAAATCTGTTTGTTTGGATCCAAACTTGGAGTATTGGCGGCAGCGGCACTACAACAAAGAAGGATTGCAGCGTCCTACTGTGAGAAGTGATGGGTGGTTGGAGATCGAGATGGGAAAATTCTTCAATTCAAACCTCAAAGATGAAGAAGTCCGTATGAGTGTTCTCCAGAGGAGTGGTTATGGGATTAACGGAGATTTGTTTATTGAAGGAATAGAAGTTAGGAATAGAAGTTAG
Protein sequence

>MS.gene068736.t1

MSKRLRAIEELPEGCIAAILSHTTPVDAGRLSAISKTFRSAADSDTVWDRFLTSHPQGINSIISDSPSRANAPTRKALYLALSDCHIIIDNGKKSFQLHRKSGQKCYMLAVRSLTIECRCVYGSKEWIPMHDSRFPEVAKLSLSFSHEIRGTINTLSLSPNTQYAVYLVFKIIYAYGYKNEPVCLNVGVDGDRRSIKSVCLDPNLEYWRQRHYNKEGLQRPTVRSDGWLEIEMGKFFNSNLKDEEVRMSVLQRSGYGINGDLFIEGIEVRNRS